Multiple sequence alignment - TraesCS5A01G384900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G384900 chr5A 100.000 2498 0 0 1 2498 582651995 582654492 0.000000e+00 4614
1 TraesCS5A01G384900 chr5A 85.779 1104 96 27 302 1376 582886569 582887640 0.000000e+00 1112
2 TraesCS5A01G384900 chr5D 92.169 1443 62 24 1 1421 462745443 462746856 0.000000e+00 1991
3 TraesCS5A01G384900 chr5D 91.854 1154 50 20 98 1231 462668875 462670004 0.000000e+00 1570
4 TraesCS5A01G384900 chr5D 81.325 1087 107 57 311 1376 462895053 462896064 0.000000e+00 795
5 TraesCS5A01G384900 chr5D 97.619 126 3 0 2256 2381 312371288 312371413 1.500000e-52 217
6 TraesCS5A01G384900 chr5D 86.792 159 5 9 1335 1478 462670011 462670168 1.990000e-36 163
7 TraesCS5A01G384900 chr5D 91.089 101 7 1 1 99 462598754 462598854 4.330000e-28 135
8 TraesCS5A01G384900 chr5B 85.627 1308 94 43 83 1338 569223575 569224840 0.000000e+00 1288
9 TraesCS5A01G384900 chr5B 84.281 1266 99 46 126 1338 569102983 569104201 0.000000e+00 1144
10 TraesCS5A01G384900 chr6A 96.530 778 22 2 1482 2259 600358677 600359449 0.000000e+00 1282
11 TraesCS5A01G384900 chrUn 84.052 1392 117 49 3 1338 343569800 343571142 0.000000e+00 1243
12 TraesCS5A01G384900 chrUn 83.980 1392 117 48 3 1338 343623713 343625054 0.000000e+00 1238
13 TraesCS5A01G384900 chrUn 84.281 1266 99 47 126 1338 199466822 199465604 0.000000e+00 1144
14 TraesCS5A01G384900 chrUn 93.379 725 29 9 714 1421 67088228 67087506 0.000000e+00 1055
15 TraesCS5A01G384900 chrUn 93.379 725 29 9 714 1421 307431406 307432128 0.000000e+00 1055
16 TraesCS5A01G384900 chrUn 90.196 612 33 13 83 684 67088820 67088226 0.000000e+00 773
17 TraesCS5A01G384900 chrUn 90.196 612 33 13 83 684 307430814 307431408 0.000000e+00 773
18 TraesCS5A01G384900 chrUn 89.670 455 38 6 1489 1939 91658298 91657849 2.790000e-159 571
19 TraesCS5A01G384900 chr1A 88.953 869 49 25 649 1478 559942194 559941334 0.000000e+00 1029
20 TraesCS5A01G384900 chr1A 86.474 865 54 32 645 1478 559979609 559978777 0.000000e+00 891
21 TraesCS5A01G384900 chr1A 89.226 659 42 22 839 1478 559887030 559886382 0.000000e+00 797
22 TraesCS5A01G384900 chr1A 84.958 472 35 14 25 494 559954392 559953955 1.760000e-121 446
23 TraesCS5A01G384900 chr1A 89.286 196 15 4 649 840 559887483 559887290 8.930000e-60 241
24 TraesCS5A01G384900 chr1A 96.850 127 4 0 2258 2384 56914599 56914473 1.950000e-51 213
25 TraesCS5A01G384900 chr1A 88.506 87 8 2 1482 1567 45587528 45587443 1.220000e-18 104
26 TraesCS5A01G384900 chr7D 89.670 455 38 6 1489 1939 107740013 107739564 2.790000e-159 571
27 TraesCS5A01G384900 chr2A 83.065 248 36 5 1482 1727 766336460 766336217 1.160000e-53 220
28 TraesCS5A01G384900 chr2A 79.724 217 32 9 2049 2255 766333644 766333430 2.000000e-31 147
29 TraesCS5A01G384900 chr7A 98.374 123 2 0 2259 2381 717823098 717822976 1.500000e-52 217
30 TraesCS5A01G384900 chr7A 97.600 125 3 0 2259 2383 620199735 620199859 5.410000e-52 215
31 TraesCS5A01G384900 chr3B 98.374 123 2 0 2259 2381 654654335 654654213 1.500000e-52 217
32 TraesCS5A01G384900 chr2B 98.374 123 2 0 2259 2381 103257519 103257397 1.500000e-52 217
33 TraesCS5A01G384900 chr2B 98.374 123 2 0 2259 2381 437818999 437818877 1.500000e-52 217
34 TraesCS5A01G384900 chr1B 98.374 123 2 0 2259 2381 299981706 299981584 1.500000e-52 217
35 TraesCS5A01G384900 chr4B 97.581 124 3 0 2258 2381 368108509 368108386 1.950000e-51 213
36 TraesCS5A01G384900 chr2D 81.553 206 31 5 1483 1686 212069689 212069489 1.990000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G384900 chr5A 582651995 582654492 2497 False 4614.0 4614 100.0000 1 2498 1 chr5A.!!$F1 2497
1 TraesCS5A01G384900 chr5A 582886569 582887640 1071 False 1112.0 1112 85.7790 302 1376 1 chr5A.!!$F2 1074
2 TraesCS5A01G384900 chr5D 462745443 462746856 1413 False 1991.0 1991 92.1690 1 1421 1 chr5D.!!$F3 1420
3 TraesCS5A01G384900 chr5D 462668875 462670168 1293 False 866.5 1570 89.3230 98 1478 2 chr5D.!!$F5 1380
4 TraesCS5A01G384900 chr5D 462895053 462896064 1011 False 795.0 795 81.3250 311 1376 1 chr5D.!!$F4 1065
5 TraesCS5A01G384900 chr5B 569223575 569224840 1265 False 1288.0 1288 85.6270 83 1338 1 chr5B.!!$F2 1255
6 TraesCS5A01G384900 chr5B 569102983 569104201 1218 False 1144.0 1144 84.2810 126 1338 1 chr5B.!!$F1 1212
7 TraesCS5A01G384900 chr6A 600358677 600359449 772 False 1282.0 1282 96.5300 1482 2259 1 chr6A.!!$F1 777
8 TraesCS5A01G384900 chrUn 343569800 343571142 1342 False 1243.0 1243 84.0520 3 1338 1 chrUn.!!$F1 1335
9 TraesCS5A01G384900 chrUn 343623713 343625054 1341 False 1238.0 1238 83.9800 3 1338 1 chrUn.!!$F2 1335
10 TraesCS5A01G384900 chrUn 199465604 199466822 1218 True 1144.0 1144 84.2810 126 1338 1 chrUn.!!$R2 1212
11 TraesCS5A01G384900 chrUn 67087506 67088820 1314 True 914.0 1055 91.7875 83 1421 2 chrUn.!!$R3 1338
12 TraesCS5A01G384900 chrUn 307430814 307432128 1314 False 914.0 1055 91.7875 83 1421 2 chrUn.!!$F3 1338
13 TraesCS5A01G384900 chr1A 559941334 559942194 860 True 1029.0 1029 88.9530 649 1478 1 chr1A.!!$R3 829
14 TraesCS5A01G384900 chr1A 559978777 559979609 832 True 891.0 891 86.4740 645 1478 1 chr1A.!!$R5 833
15 TraesCS5A01G384900 chr1A 559886382 559887483 1101 True 519.0 797 89.2560 649 1478 2 chr1A.!!$R6 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 604 0.036306 TTCTTCTGTTCCCTTCCCGC 59.964 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2357 2740 0.099082 GAAGCTCCTCTGACGTACGG 59.901 60.0 21.06 1.5 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 99 2.836154 TTGGTCTCGGCCAAGCTT 59.164 55.556 2.24 0.00 42.98 3.74
113 117 1.135915 CTTCTCCTCATCTCCACCACG 59.864 57.143 0.00 0.00 0.00 4.94
216 220 6.702723 TGACTATAAGTAACAGCAAAACGTGT 59.297 34.615 0.00 0.00 0.00 4.49
240 244 9.062524 TGTTTATCCATATGTGCCATTAGTTAC 57.937 33.333 1.24 0.00 0.00 2.50
241 245 9.284968 GTTTATCCATATGTGCCATTAGTTACT 57.715 33.333 1.24 0.00 0.00 2.24
242 246 9.860650 TTTATCCATATGTGCCATTAGTTACTT 57.139 29.630 1.24 0.00 0.00 2.24
245 249 8.029782 TCCATATGTGCCATTAGTTACTTAGT 57.970 34.615 1.24 0.00 0.00 2.24
246 250 8.491134 TCCATATGTGCCATTAGTTACTTAGTT 58.509 33.333 1.24 0.00 0.00 2.24
247 251 9.772973 CCATATGTGCCATTAGTTACTTAGTTA 57.227 33.333 1.24 0.00 0.00 2.24
249 253 7.787725 ATGTGCCATTAGTTACTTAGTTAGC 57.212 36.000 0.00 0.00 0.00 3.09
252 256 7.881232 TGTGCCATTAGTTACTTAGTTAGCTTT 59.119 33.333 0.00 0.00 0.00 3.51
282 286 3.243975 ACATTGGCAGAAGCAAGGAAAAG 60.244 43.478 0.00 0.00 44.61 2.27
300 305 3.379865 GAACGGCCGGCATAGTGGA 62.380 63.158 31.76 0.00 0.00 4.02
360 365 2.521103 GCCTGTGATCTAGGGCAGA 58.479 57.895 15.48 0.00 43.59 4.26
361 366 0.392336 GCCTGTGATCTAGGGCAGAG 59.608 60.000 15.48 2.58 43.59 3.35
362 367 2.031624 GCCTGTGATCTAGGGCAGAGA 61.032 57.143 15.48 0.00 43.59 3.10
363 368 2.607499 CCTGTGATCTAGGGCAGAGAT 58.393 52.381 10.18 0.40 36.48 2.75
381 391 2.702478 AGATGAGATGAATTCCTCCGCA 59.298 45.455 2.27 4.87 0.00 5.69
471 490 9.798994 GAAGTCATGAAATAGCAATCAAAGATT 57.201 29.630 0.00 0.00 0.00 2.40
515 535 3.330267 GCGGAGATTTGATCATAGTCCC 58.670 50.000 0.00 0.00 0.00 4.46
516 536 3.579709 CGGAGATTTGATCATAGTCCCG 58.420 50.000 0.00 4.15 0.00 5.14
580 604 0.036306 TTCTTCTGTTCCCTTCCCGC 59.964 55.000 0.00 0.00 0.00 6.13
897 1217 1.865248 GCACAGCACGAAAAGCACAAT 60.865 47.619 0.00 0.00 0.00 2.71
962 1297 2.508586 AAGAAGAAGAGCCCGCCGTC 62.509 60.000 0.00 0.00 0.00 4.79
1026 1374 2.046892 GTGGTGGTGAGCTGCGAT 60.047 61.111 0.00 0.00 0.00 4.58
1387 1749 2.456119 CGTCCGCCTGAGTTGATGC 61.456 63.158 0.00 0.00 0.00 3.91
1434 1814 2.293677 TCGGCACAATCTAGCTAGCTAC 59.706 50.000 20.67 8.87 0.00 3.58
1435 1815 2.294791 CGGCACAATCTAGCTAGCTACT 59.705 50.000 20.67 8.22 0.00 2.57
1436 1816 3.648009 GGCACAATCTAGCTAGCTACTG 58.352 50.000 20.67 18.27 0.00 2.74
1527 1910 3.139565 GGGACACCCGGCTATCTC 58.860 66.667 0.00 0.00 32.13 2.75
1537 1920 3.290776 GGCTATCTCGCCGTTCATT 57.709 52.632 0.00 0.00 40.79 2.57
1561 1944 0.534412 CTGTCCTGACTTGGCGATCT 59.466 55.000 0.00 0.00 0.00 2.75
1565 1948 1.364626 CCTGACTTGGCGATCTGTGC 61.365 60.000 0.00 0.00 0.00 4.57
1585 1968 0.532862 CCCGCGCTGTAATGGAGAAT 60.533 55.000 5.56 0.00 0.00 2.40
1712 2095 1.001746 CCTGTCACACAGCTCAGTCAT 59.998 52.381 0.00 0.00 44.63 3.06
1751 2134 0.449388 GATTTGCAGAGTCTTGCCGG 59.551 55.000 0.00 0.00 43.43 6.13
1795 2178 8.854614 ATCAAGTAAAGAGCTACATCAACTTT 57.145 30.769 0.00 0.00 35.47 2.66
1840 2223 6.382869 AATAATTGTGCCTCACTAAGATGC 57.617 37.500 0.00 0.00 38.25 3.91
1982 2365 6.183360 ACAGTTTCGCCATCGAGTAAAATAAG 60.183 38.462 0.00 0.00 46.34 1.73
1994 2377 3.897505 AGTAAAATAAGGATGGCCCATGC 59.102 43.478 7.21 7.21 37.41 4.06
1995 2378 2.475339 AAATAAGGATGGCCCATGCA 57.525 45.000 18.13 0.00 40.13 3.96
1996 2379 2.708037 AATAAGGATGGCCCATGCAT 57.292 45.000 18.13 8.19 40.13 3.96
1997 2380 1.933021 ATAAGGATGGCCCATGCATG 58.067 50.000 20.19 20.19 40.13 4.06
2138 2521 8.074613 ACTAGTCCATAGTAGCAACACAATTA 57.925 34.615 0.00 0.00 43.17 1.40
2162 2545 3.073274 AGGTCAAATGGACTGGTAAGC 57.927 47.619 0.00 0.00 46.16 3.09
2170 2553 1.339055 TGGACTGGTAAGCATGCAGAC 60.339 52.381 21.98 16.46 0.00 3.51
2235 2618 1.133575 ACGAGGTCGGATGGATAGGAA 60.134 52.381 4.13 0.00 44.95 3.36
2275 2658 3.551407 GGACGAGGATCCCCTGCC 61.551 72.222 8.55 1.52 44.53 4.85
2276 2659 3.917760 GACGAGGATCCCCTGCCG 61.918 72.222 8.55 7.30 44.53 5.69
2277 2660 4.779733 ACGAGGATCCCCTGCCGT 62.780 66.667 8.55 7.95 44.53 5.68
2278 2661 4.227134 CGAGGATCCCCTGCCGTG 62.227 72.222 8.55 0.00 44.53 4.94
2279 2662 4.554036 GAGGATCCCCTGCCGTGC 62.554 72.222 8.55 0.00 44.53 5.34
2305 2688 4.719369 GCCGTTCCGTCGCTGACT 62.719 66.667 7.03 0.00 0.00 3.41
2306 2689 2.504244 CCGTTCCGTCGCTGACTC 60.504 66.667 7.03 0.00 0.00 3.36
2307 2690 2.254350 CGTTCCGTCGCTGACTCA 59.746 61.111 7.03 0.00 0.00 3.41
2308 2691 1.154016 CGTTCCGTCGCTGACTCAT 60.154 57.895 7.03 0.00 0.00 2.90
2309 2692 1.406219 CGTTCCGTCGCTGACTCATG 61.406 60.000 7.03 0.00 0.00 3.07
2310 2693 1.078759 GTTCCGTCGCTGACTCATGG 61.079 60.000 0.00 2.01 0.00 3.66
2311 2694 2.202797 CCGTCGCTGACTCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
2312 2695 2.573869 CGTCGCTGACTCATGGGT 59.426 61.111 0.00 0.00 0.00 4.51
2313 2696 1.517257 CGTCGCTGACTCATGGGTC 60.517 63.158 19.33 19.33 36.81 4.46
2314 2697 1.153549 GTCGCTGACTCATGGGTCC 60.154 63.158 22.96 7.57 35.54 4.46
2315 2698 2.202797 CGCTGACTCATGGGTCCG 60.203 66.667 22.96 17.63 35.54 4.79
2316 2699 2.710902 CGCTGACTCATGGGTCCGA 61.711 63.158 22.96 4.35 35.54 4.55
2317 2700 1.153549 GCTGACTCATGGGTCCGAC 60.154 63.158 22.96 8.52 35.54 4.79
2318 2701 1.608717 GCTGACTCATGGGTCCGACT 61.609 60.000 22.96 0.00 35.54 4.18
2319 2702 0.174389 CTGACTCATGGGTCCGACTG 59.826 60.000 22.96 4.56 35.54 3.51
2320 2703 0.251608 TGACTCATGGGTCCGACTGA 60.252 55.000 22.96 0.00 35.54 3.41
2321 2704 0.895530 GACTCATGGGTCCGACTGAA 59.104 55.000 15.31 0.00 0.00 3.02
2322 2705 1.275291 GACTCATGGGTCCGACTGAAA 59.725 52.381 15.31 0.00 0.00 2.69
2323 2706 1.002087 ACTCATGGGTCCGACTGAAAC 59.998 52.381 0.00 0.00 0.00 2.78
2324 2707 1.276421 CTCATGGGTCCGACTGAAACT 59.724 52.381 0.00 0.00 0.00 2.66
2325 2708 1.697432 TCATGGGTCCGACTGAAACTT 59.303 47.619 0.00 0.00 0.00 2.66
2326 2709 1.806542 CATGGGTCCGACTGAAACTTG 59.193 52.381 0.00 0.00 0.00 3.16
2327 2710 1.124780 TGGGTCCGACTGAAACTTGA 58.875 50.000 0.00 0.00 0.00 3.02
2328 2711 1.202604 TGGGTCCGACTGAAACTTGAC 60.203 52.381 0.00 0.00 0.00 3.18
2329 2712 1.509703 GGTCCGACTGAAACTTGACC 58.490 55.000 0.00 0.00 35.91 4.02
2330 2713 1.509703 GTCCGACTGAAACTTGACCC 58.490 55.000 0.00 0.00 0.00 4.46
2331 2714 1.124780 TCCGACTGAAACTTGACCCA 58.875 50.000 0.00 0.00 0.00 4.51
2332 2715 1.202604 TCCGACTGAAACTTGACCCAC 60.203 52.381 0.00 0.00 0.00 4.61
2333 2716 1.226746 CGACTGAAACTTGACCCACC 58.773 55.000 0.00 0.00 0.00 4.61
2334 2717 1.202651 CGACTGAAACTTGACCCACCT 60.203 52.381 0.00 0.00 0.00 4.00
2335 2718 2.222027 GACTGAAACTTGACCCACCTG 58.778 52.381 0.00 0.00 0.00 4.00
2336 2719 1.564348 ACTGAAACTTGACCCACCTGT 59.436 47.619 0.00 0.00 0.00 4.00
2337 2720 2.222027 CTGAAACTTGACCCACCTGTC 58.778 52.381 0.00 0.00 35.77 3.51
2338 2721 1.562008 TGAAACTTGACCCACCTGTCA 59.438 47.619 0.00 0.00 43.26 3.58
2339 2722 2.222027 GAAACTTGACCCACCTGTCAG 58.778 52.381 0.00 0.00 45.37 3.51
2340 2723 1.213296 AACTTGACCCACCTGTCAGT 58.787 50.000 0.00 0.00 45.37 3.41
2341 2724 0.469917 ACTTGACCCACCTGTCAGTG 59.530 55.000 0.00 0.00 45.37 3.66
2348 2731 3.233355 CACCTGTCAGTGGCCTAAC 57.767 57.895 3.32 0.00 33.95 2.34
2349 2732 0.670546 CACCTGTCAGTGGCCTAACG 60.671 60.000 3.32 0.00 33.95 3.18
2350 2733 1.079127 CCTGTCAGTGGCCTAACGG 60.079 63.158 3.32 1.71 0.00 4.44
2372 2755 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
2373 2756 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
2374 2757 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
2375 2758 1.935327 GCCGTACGTCAGAGGAGCTT 61.935 60.000 15.21 0.00 0.00 3.74
2376 2759 0.099082 CCGTACGTCAGAGGAGCTTC 59.901 60.000 15.21 0.00 0.00 3.86
2377 2760 0.099082 CGTACGTCAGAGGAGCTTCC 59.901 60.000 7.22 0.00 36.58 3.46
2387 2770 3.839432 GAGCTTCCTCCGACCCCG 61.839 72.222 0.00 0.00 31.68 5.73
2398 2781 3.468140 GACCCCGGGAGCTACCAC 61.468 72.222 26.32 0.00 41.20 4.16
2399 2782 4.326227 ACCCCGGGAGCTACCACA 62.326 66.667 26.32 0.00 41.20 4.17
2400 2783 2.768344 CCCCGGGAGCTACCACAT 60.768 66.667 26.32 0.00 41.20 3.21
2401 2784 2.808206 CCCCGGGAGCTACCACATC 61.808 68.421 26.32 0.00 41.20 3.06
2402 2785 1.762460 CCCGGGAGCTACCACATCT 60.762 63.158 18.48 0.00 41.20 2.90
2403 2786 1.338136 CCCGGGAGCTACCACATCTT 61.338 60.000 18.48 0.00 41.20 2.40
2404 2787 0.541863 CCGGGAGCTACCACATCTTT 59.458 55.000 17.35 0.00 41.20 2.52
2405 2788 1.065418 CCGGGAGCTACCACATCTTTT 60.065 52.381 17.35 0.00 41.20 2.27
2406 2789 2.280628 CGGGAGCTACCACATCTTTTC 58.719 52.381 17.35 0.00 41.20 2.29
2407 2790 2.280628 GGGAGCTACCACATCTTTTCG 58.719 52.381 11.24 0.00 41.20 3.46
2408 2791 2.093658 GGGAGCTACCACATCTTTTCGA 60.094 50.000 11.24 0.00 41.20 3.71
2409 2792 3.432326 GGGAGCTACCACATCTTTTCGAT 60.432 47.826 11.24 0.00 41.20 3.59
2410 2793 4.192317 GGAGCTACCACATCTTTTCGATT 58.808 43.478 0.00 0.00 38.79 3.34
2411 2794 4.636206 GGAGCTACCACATCTTTTCGATTT 59.364 41.667 0.00 0.00 38.79 2.17
2412 2795 5.123979 GGAGCTACCACATCTTTTCGATTTT 59.876 40.000 0.00 0.00 38.79 1.82
2413 2796 5.942872 AGCTACCACATCTTTTCGATTTTG 58.057 37.500 0.00 0.00 0.00 2.44
2414 2797 5.473504 AGCTACCACATCTTTTCGATTTTGT 59.526 36.000 0.00 0.00 0.00 2.83
2415 2798 6.016276 AGCTACCACATCTTTTCGATTTTGTT 60.016 34.615 0.00 0.00 0.00 2.83
2416 2799 6.640907 GCTACCACATCTTTTCGATTTTGTTT 59.359 34.615 0.00 0.00 0.00 2.83
2417 2800 7.169140 GCTACCACATCTTTTCGATTTTGTTTT 59.831 33.333 0.00 0.00 0.00 2.43
2418 2801 7.232945 ACCACATCTTTTCGATTTTGTTTTG 57.767 32.000 0.00 0.00 0.00 2.44
2419 2802 7.038659 ACCACATCTTTTCGATTTTGTTTTGA 58.961 30.769 0.00 0.00 0.00 2.69
2420 2803 7.547370 ACCACATCTTTTCGATTTTGTTTTGAA 59.453 29.630 0.00 0.00 0.00 2.69
2421 2804 8.550376 CCACATCTTTTCGATTTTGTTTTGAAT 58.450 29.630 0.00 0.00 0.00 2.57
2422 2805 9.919348 CACATCTTTTCGATTTTGTTTTGAATT 57.081 25.926 0.00 0.00 0.00 2.17
2430 2813 8.233692 TCGATTTTGTTTTGAATTTATTCCGG 57.766 30.769 0.00 0.00 35.97 5.14
2431 2814 8.082852 TCGATTTTGTTTTGAATTTATTCCGGA 58.917 29.630 0.00 0.00 35.97 5.14
2432 2815 8.704234 CGATTTTGTTTTGAATTTATTCCGGAA 58.296 29.630 21.37 21.37 35.97 4.30
2435 2818 8.950208 TTTGTTTTGAATTTATTCCGGAAACT 57.050 26.923 23.08 8.43 35.92 2.66
2437 2820 9.465985 TTGTTTTGAATTTATTCCGGAAACTAC 57.534 29.630 23.08 11.16 35.92 2.73
2438 2821 8.630917 TGTTTTGAATTTATTCCGGAAACTACA 58.369 29.630 23.08 13.54 35.92 2.74
2439 2822 8.908678 GTTTTGAATTTATTCCGGAAACTACAC 58.091 33.333 23.08 12.19 35.97 2.90
2440 2823 7.747155 TTGAATTTATTCCGGAAACTACACA 57.253 32.000 23.08 14.57 35.97 3.72
2441 2824 7.136289 TGAATTTATTCCGGAAACTACACAC 57.864 36.000 23.08 9.44 35.97 3.82
2442 2825 5.789710 ATTTATTCCGGAAACTACACACG 57.210 39.130 23.08 0.00 0.00 4.49
2443 2826 4.517952 TTATTCCGGAAACTACACACGA 57.482 40.909 23.08 0.00 0.00 4.35
2444 2827 2.427232 TTCCGGAAACTACACACGAG 57.573 50.000 16.28 0.00 0.00 4.18
2445 2828 1.321474 TCCGGAAACTACACACGAGT 58.679 50.000 0.00 0.00 0.00 4.18
2457 2840 2.483876 CACACGAGTGTTTGATGGAGT 58.516 47.619 6.09 0.00 42.83 3.85
2458 2841 3.649073 CACACGAGTGTTTGATGGAGTA 58.351 45.455 6.09 0.00 42.83 2.59
2459 2842 3.428870 CACACGAGTGTTTGATGGAGTAC 59.571 47.826 6.09 0.00 42.83 2.73
2460 2843 3.321111 ACACGAGTGTTTGATGGAGTACT 59.679 43.478 2.62 0.00 41.83 2.73
2461 2844 4.521639 ACACGAGTGTTTGATGGAGTACTA 59.478 41.667 2.62 0.00 41.83 1.82
2462 2845 5.185249 ACACGAGTGTTTGATGGAGTACTAT 59.815 40.000 2.62 0.00 41.83 2.12
2463 2846 6.376299 ACACGAGTGTTTGATGGAGTACTATA 59.624 38.462 2.62 0.00 41.83 1.31
2464 2847 7.068348 ACACGAGTGTTTGATGGAGTACTATAT 59.932 37.037 2.62 0.00 41.83 0.86
2465 2848 8.565416 CACGAGTGTTTGATGGAGTACTATATA 58.435 37.037 0.00 0.00 0.00 0.86
2466 2849 9.128404 ACGAGTGTTTGATGGAGTACTATATAA 57.872 33.333 0.00 0.00 0.00 0.98
2475 2858 9.392259 TGATGGAGTACTATATAATGTACGAGG 57.608 37.037 0.00 0.00 42.53 4.63
2476 2859 9.393512 GATGGAGTACTATATAATGTACGAGGT 57.606 37.037 0.00 0.00 42.53 3.85
2477 2860 9.750783 ATGGAGTACTATATAATGTACGAGGTT 57.249 33.333 0.00 0.00 42.53 3.50
2487 2870 9.998106 ATATAATGTACGAGGTTAAAGCTCATT 57.002 29.630 0.00 0.00 42.53 2.57
2488 2871 8.732746 ATAATGTACGAGGTTAAAGCTCATTT 57.267 30.769 0.00 0.00 42.53 2.32
2489 2872 9.826574 ATAATGTACGAGGTTAAAGCTCATTTA 57.173 29.630 0.00 0.00 42.53 1.40
2490 2873 8.556213 AATGTACGAGGTTAAAGCTCATTTAA 57.444 30.769 0.00 0.00 42.53 1.52
2491 2874 8.732746 ATGTACGAGGTTAAAGCTCATTTAAT 57.267 30.769 0.00 0.00 43.45 1.40
2492 2875 8.193250 TGTACGAGGTTAAAGCTCATTTAATC 57.807 34.615 0.00 0.00 43.45 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.570415 TTTGTTGGGCCGATTCTACA 57.430 45.000 0.00 0.00 0.00 2.74
62 66 2.814336 GACCAAGGTTGTCAGAATCACC 59.186 50.000 0.00 0.00 0.00 4.02
95 99 0.331616 TCGTGGTGGAGATGAGGAGA 59.668 55.000 0.00 0.00 0.00 3.71
138 142 3.394674 TTTTGTGTATGCACTCTCCGA 57.605 42.857 15.25 0.00 45.44 4.55
188 192 7.225145 ACGTTTTGCTGTTACTTATAGTCAACA 59.775 33.333 0.00 0.00 0.00 3.33
240 244 5.673337 TGTGCAAGTGAAAGCTAACTAAG 57.327 39.130 0.00 0.00 0.00 2.18
241 245 6.437928 CAATGTGCAAGTGAAAGCTAACTAA 58.562 36.000 0.00 0.00 0.00 2.24
242 246 5.048782 CCAATGTGCAAGTGAAAGCTAACTA 60.049 40.000 0.00 0.00 0.00 2.24
243 247 4.261741 CCAATGTGCAAGTGAAAGCTAACT 60.262 41.667 0.00 0.00 0.00 2.24
244 248 3.983344 CCAATGTGCAAGTGAAAGCTAAC 59.017 43.478 0.00 0.00 0.00 2.34
245 249 3.552684 GCCAATGTGCAAGTGAAAGCTAA 60.553 43.478 0.00 0.00 0.00 3.09
246 250 2.030007 GCCAATGTGCAAGTGAAAGCTA 60.030 45.455 0.00 0.00 0.00 3.32
247 251 1.269936 GCCAATGTGCAAGTGAAAGCT 60.270 47.619 0.00 0.00 0.00 3.74
248 252 1.142474 GCCAATGTGCAAGTGAAAGC 58.858 50.000 0.00 0.00 0.00 3.51
249 253 2.034939 TCTGCCAATGTGCAAGTGAAAG 59.965 45.455 0.00 0.00 41.51 2.62
252 256 1.610038 CTTCTGCCAATGTGCAAGTGA 59.390 47.619 0.00 0.00 41.51 3.41
282 286 2.862674 TTCCACTATGCCGGCCGTTC 62.863 60.000 26.77 16.03 0.00 3.95
300 305 6.383726 TGGTTCCCTACGTACACCTTAATATT 59.616 38.462 0.00 0.00 0.00 1.28
359 364 3.244009 TGCGGAGGAATTCATCTCATCTC 60.244 47.826 18.71 8.29 0.00 2.75
360 365 2.702478 TGCGGAGGAATTCATCTCATCT 59.298 45.455 18.71 0.00 0.00 2.90
361 366 2.805099 GTGCGGAGGAATTCATCTCATC 59.195 50.000 18.71 7.14 0.00 2.92
362 367 2.171237 TGTGCGGAGGAATTCATCTCAT 59.829 45.455 18.71 0.00 0.00 2.90
363 368 1.554617 TGTGCGGAGGAATTCATCTCA 59.445 47.619 18.71 13.90 0.00 3.27
381 391 0.251653 TCCAAGTCGGAGCTAGGTGT 60.252 55.000 0.00 0.00 39.64 4.16
471 490 5.271625 CGCGCTTTAGTCTTCTAATAGACA 58.728 41.667 5.56 0.00 45.57 3.41
479 498 1.805945 CCGCGCGCTTTAGTCTTCT 60.806 57.895 30.48 0.00 0.00 2.85
515 535 5.788531 GTGTCGTCCAATTTAATTTGTCTCG 59.211 40.000 8.77 9.47 0.00 4.04
516 536 6.664515 TGTGTCGTCCAATTTAATTTGTCTC 58.335 36.000 8.77 0.29 0.00 3.36
580 604 1.066215 GCCTGGTTTAATTTGCCCTGG 60.066 52.381 0.00 0.00 38.66 4.45
622 649 4.157289 TGTTCTCATCAGGTTCTACGTACC 59.843 45.833 0.00 0.00 35.85 3.34
733 784 2.830704 CTTGGACTCACGTACCCCGC 62.831 65.000 0.00 0.00 41.42 6.13
734 785 1.214589 CTTGGACTCACGTACCCCG 59.785 63.158 0.00 0.00 44.03 5.73
751 806 4.621034 CGAAGAACAGTTTGTTTTGTTGCT 59.379 37.500 0.00 0.00 41.28 3.91
753 808 4.621034 AGCGAAGAACAGTTTGTTTTGTTG 59.379 37.500 0.00 0.00 41.28 3.33
754 809 4.805219 AGCGAAGAACAGTTTGTTTTGTT 58.195 34.783 0.00 0.00 41.28 2.83
897 1217 8.429237 AGAAGAAGAAGAAGAATCAGGTTCTA 57.571 34.615 0.00 0.00 46.39 2.10
962 1297 9.983804 GAAAGTTGGATTATTACCTAGAAAACG 57.016 33.333 0.00 0.00 0.00 3.60
992 1328 0.537188 CACCGCCTCCATGTCTAACT 59.463 55.000 0.00 0.00 0.00 2.24
1045 1393 2.048503 GTACTCGCCGGTGCACTT 60.049 61.111 17.98 0.00 37.32 3.16
1110 1458 1.289066 CTTGACGGACTCGGAGCAA 59.711 57.895 4.58 0.07 41.39 3.91
1422 1802 6.068461 AGGCATATACAGTAGCTAGCTAGA 57.932 41.667 24.78 10.87 0.00 2.43
1478 1861 5.926214 GACCTAAAAGTCCTGTCTCAAAC 57.074 43.478 0.00 0.00 0.00 2.93
1527 1910 0.163788 GACAGTGTGAATGAACGGCG 59.836 55.000 4.80 4.80 0.00 6.46
1537 1920 0.106708 GCCAAGTCAGGACAGTGTGA 59.893 55.000 0.00 0.00 0.00 3.58
1565 1948 2.587322 TTCTCCATTACAGCGCGGGG 62.587 60.000 13.26 0.63 0.00 5.73
1568 1951 0.583438 CCATTCTCCATTACAGCGCG 59.417 55.000 0.00 0.00 0.00 6.86
1570 1953 1.134098 ACCCCATTCTCCATTACAGCG 60.134 52.381 0.00 0.00 0.00 5.18
1585 1968 3.074687 TGTTCACATAGCCTTTAACCCCA 59.925 43.478 0.00 0.00 0.00 4.96
1635 2018 0.674269 CGCAGCCCATTGCCATTTTT 60.674 50.000 0.00 0.00 42.71 1.94
1712 2095 0.401738 CCTGTGGGAAAGGAGAGCAA 59.598 55.000 0.00 0.00 36.91 3.91
1738 2121 3.335356 ATGGGCCGGCAAGACTCTG 62.335 63.158 30.85 0.00 0.00 3.35
1751 2134 4.410099 TGATAAAGAATGATGGGATGGGC 58.590 43.478 0.00 0.00 0.00 5.36
1795 2178 7.948034 ATTTACTTGGTTATTTTGATCGGGA 57.052 32.000 0.00 0.00 0.00 5.14
1829 2212 0.824109 CTGGTCCGGCATCTTAGTGA 59.176 55.000 0.00 0.00 0.00 3.41
2099 2482 7.365831 ACTATGGACTAGTAGGCTATAGGTAGC 60.366 44.444 29.87 2.90 45.84 3.58
2121 2504 6.958767 ACCTTCCTAATTGTGTTGCTACTAT 58.041 36.000 0.00 0.00 0.00 2.12
2138 2521 2.065799 ACCAGTCCATTTGACCTTCCT 58.934 47.619 0.00 0.00 45.68 3.36
2186 2569 7.551974 AGATTCATATGGTCTTCTGTCAAACTG 59.448 37.037 2.13 0.00 0.00 3.16
2259 2642 3.917760 CGGCAGGGGATCCTCGTC 61.918 72.222 12.58 4.80 42.67 4.20
2260 2643 4.779733 ACGGCAGGGGATCCTCGT 62.780 66.667 12.58 11.06 42.67 4.18
2261 2644 4.227134 CACGGCAGGGGATCCTCG 62.227 72.222 12.58 5.37 42.67 4.63
2262 2645 4.554036 GCACGGCAGGGGATCCTC 62.554 72.222 12.58 7.90 42.67 3.71
2291 2674 1.078759 CCATGAGTCAGCGACGGAAC 61.079 60.000 0.00 0.00 37.67 3.62
2292 2675 1.215382 CCATGAGTCAGCGACGGAA 59.785 57.895 0.00 0.00 37.67 4.30
2293 2676 2.710902 CCCATGAGTCAGCGACGGA 61.711 63.158 0.00 0.00 37.67 4.69
2294 2677 2.202797 CCCATGAGTCAGCGACGG 60.203 66.667 0.00 0.00 37.67 4.79
2295 2678 1.517257 GACCCATGAGTCAGCGACG 60.517 63.158 1.95 0.00 37.67 5.12
2296 2679 1.153549 GGACCCATGAGTCAGCGAC 60.154 63.158 9.77 1.15 38.59 5.19
2297 2680 2.710902 CGGACCCATGAGTCAGCGA 61.711 63.158 9.77 0.00 38.59 4.93
2298 2681 2.202797 CGGACCCATGAGTCAGCG 60.203 66.667 9.77 0.78 38.59 5.18
2299 2682 1.153549 GTCGGACCCATGAGTCAGC 60.154 63.158 9.77 0.00 38.59 4.26
2300 2683 0.174389 CAGTCGGACCCATGAGTCAG 59.826 60.000 9.77 5.40 38.59 3.51
2301 2684 0.251608 TCAGTCGGACCCATGAGTCA 60.252 55.000 9.77 0.00 38.59 3.41
2302 2685 0.895530 TTCAGTCGGACCCATGAGTC 59.104 55.000 4.14 0.00 35.95 3.36
2303 2686 1.002087 GTTTCAGTCGGACCCATGAGT 59.998 52.381 4.14 0.00 0.00 3.41
2304 2687 1.276421 AGTTTCAGTCGGACCCATGAG 59.724 52.381 4.14 0.00 0.00 2.90
2305 2688 1.348064 AGTTTCAGTCGGACCCATGA 58.652 50.000 4.14 0.00 0.00 3.07
2306 2689 1.806542 CAAGTTTCAGTCGGACCCATG 59.193 52.381 4.14 0.00 0.00 3.66
2307 2690 1.697432 TCAAGTTTCAGTCGGACCCAT 59.303 47.619 4.14 0.00 0.00 4.00
2308 2691 1.124780 TCAAGTTTCAGTCGGACCCA 58.875 50.000 4.14 0.00 0.00 4.51
2309 2692 1.509703 GTCAAGTTTCAGTCGGACCC 58.490 55.000 4.14 0.00 0.00 4.46
2310 2693 1.509703 GGTCAAGTTTCAGTCGGACC 58.490 55.000 4.14 0.00 38.15 4.46
2311 2694 1.202604 TGGGTCAAGTTTCAGTCGGAC 60.203 52.381 0.00 0.00 0.00 4.79
2312 2695 1.124780 TGGGTCAAGTTTCAGTCGGA 58.875 50.000 0.00 0.00 0.00 4.55
2313 2696 1.226746 GTGGGTCAAGTTTCAGTCGG 58.773 55.000 0.00 0.00 0.00 4.79
2314 2697 1.202651 AGGTGGGTCAAGTTTCAGTCG 60.203 52.381 0.00 0.00 0.00 4.18
2315 2698 2.222027 CAGGTGGGTCAAGTTTCAGTC 58.778 52.381 0.00 0.00 0.00 3.51
2316 2699 1.564348 ACAGGTGGGTCAAGTTTCAGT 59.436 47.619 0.00 0.00 0.00 3.41
2317 2700 2.222027 GACAGGTGGGTCAAGTTTCAG 58.778 52.381 0.00 0.00 37.73 3.02
2318 2701 1.562008 TGACAGGTGGGTCAAGTTTCA 59.438 47.619 0.00 0.00 44.34 2.69
2319 2702 2.222027 CTGACAGGTGGGTCAAGTTTC 58.778 52.381 0.00 0.00 46.36 2.78
2320 2703 1.564348 ACTGACAGGTGGGTCAAGTTT 59.436 47.619 7.51 0.00 46.36 2.66
2321 2704 1.134098 CACTGACAGGTGGGTCAAGTT 60.134 52.381 7.51 0.00 46.36 2.66
2322 2705 0.469917 CACTGACAGGTGGGTCAAGT 59.530 55.000 7.51 0.00 46.36 3.16
2323 2706 3.312404 CACTGACAGGTGGGTCAAG 57.688 57.895 7.51 0.00 46.36 3.02
2330 2713 0.670546 CGTTAGGCCACTGACAGGTG 60.671 60.000 5.01 2.99 33.11 4.00
2331 2714 1.671742 CGTTAGGCCACTGACAGGT 59.328 57.895 5.01 0.00 33.11 4.00
2332 2715 1.079127 CCGTTAGGCCACTGACAGG 60.079 63.158 5.01 0.00 33.11 4.00
2333 2716 4.598257 CCGTTAGGCCACTGACAG 57.402 61.111 5.01 0.00 33.11 3.51
2356 2739 1.935327 AAGCTCCTCTGACGTACGGC 61.935 60.000 21.06 18.72 0.00 5.68
2357 2740 0.099082 GAAGCTCCTCTGACGTACGG 59.901 60.000 21.06 1.50 0.00 4.02
2358 2741 0.099082 GGAAGCTCCTCTGACGTACG 59.901 60.000 15.01 15.01 32.53 3.67
2359 2742 1.465794 AGGAAGCTCCTCTGACGTAC 58.534 55.000 0.00 0.00 45.66 3.67
2360 2743 3.981051 AGGAAGCTCCTCTGACGTA 57.019 52.632 0.00 0.00 45.66 3.57
2361 2744 4.854587 AGGAAGCTCCTCTGACGT 57.145 55.556 0.00 0.00 45.66 4.34
2369 2752 3.471806 GGGGTCGGAGGAAGCTCC 61.472 72.222 0.00 0.00 40.04 4.70
2370 2753 3.839432 CGGGGTCGGAGGAAGCTC 61.839 72.222 0.00 0.00 0.00 4.09
2381 2764 3.468140 GTGGTAGCTCCCGGGGTC 61.468 72.222 23.50 13.00 34.77 4.46
2382 2765 3.635869 ATGTGGTAGCTCCCGGGGT 62.636 63.158 23.50 8.54 34.77 4.95
2383 2766 2.768344 ATGTGGTAGCTCCCGGGG 60.768 66.667 23.50 13.02 34.77 5.73
2384 2767 1.338136 AAGATGTGGTAGCTCCCGGG 61.338 60.000 16.85 16.85 34.77 5.73
2385 2768 0.541863 AAAGATGTGGTAGCTCCCGG 59.458 55.000 0.00 0.00 34.77 5.73
2386 2769 2.280628 GAAAAGATGTGGTAGCTCCCG 58.719 52.381 0.00 0.00 34.77 5.14
2387 2770 2.093658 TCGAAAAGATGTGGTAGCTCCC 60.094 50.000 0.00 0.00 34.77 4.30
2388 2771 3.247006 TCGAAAAGATGTGGTAGCTCC 57.753 47.619 0.00 0.00 0.00 4.70
2389 2772 5.803020 AAATCGAAAAGATGTGGTAGCTC 57.197 39.130 0.00 0.00 40.02 4.09
2390 2773 5.473504 ACAAAATCGAAAAGATGTGGTAGCT 59.526 36.000 0.00 0.00 40.02 3.32
2391 2774 5.699839 ACAAAATCGAAAAGATGTGGTAGC 58.300 37.500 0.00 0.00 40.02 3.58
2392 2775 8.479280 CAAAACAAAATCGAAAAGATGTGGTAG 58.521 33.333 0.00 0.00 40.02 3.18
2393 2776 8.191446 TCAAAACAAAATCGAAAAGATGTGGTA 58.809 29.630 0.00 0.00 40.02 3.25
2394 2777 7.038659 TCAAAACAAAATCGAAAAGATGTGGT 58.961 30.769 0.00 0.00 40.02 4.16
2395 2778 7.462109 TCAAAACAAAATCGAAAAGATGTGG 57.538 32.000 0.00 0.00 40.02 4.17
2396 2779 9.919348 AATTCAAAACAAAATCGAAAAGATGTG 57.081 25.926 0.00 0.00 40.02 3.21
2404 2787 8.704234 CCGGAATAAATTCAAAACAAAATCGAA 58.296 29.630 0.00 0.00 38.53 3.71
2405 2788 8.082852 TCCGGAATAAATTCAAAACAAAATCGA 58.917 29.630 0.00 0.00 38.53 3.59
2406 2789 8.233692 TCCGGAATAAATTCAAAACAAAATCG 57.766 30.769 0.00 0.00 38.53 3.34
2409 2792 9.384764 AGTTTCCGGAATAAATTCAAAACAAAA 57.615 25.926 19.62 0.00 37.50 2.44
2410 2793 8.950208 AGTTTCCGGAATAAATTCAAAACAAA 57.050 26.923 19.62 0.00 37.50 2.83
2411 2794 9.465985 GTAGTTTCCGGAATAAATTCAAAACAA 57.534 29.630 19.62 0.00 37.50 2.83
2412 2795 8.630917 TGTAGTTTCCGGAATAAATTCAAAACA 58.369 29.630 19.62 6.10 37.50 2.83
2413 2796 8.908678 GTGTAGTTTCCGGAATAAATTCAAAAC 58.091 33.333 19.62 8.97 38.53 2.43
2414 2797 8.630917 TGTGTAGTTTCCGGAATAAATTCAAAA 58.369 29.630 19.62 0.00 38.53 2.44
2415 2798 8.077386 GTGTGTAGTTTCCGGAATAAATTCAAA 58.923 33.333 19.62 0.00 38.53 2.69
2416 2799 7.571613 CGTGTGTAGTTTCCGGAATAAATTCAA 60.572 37.037 19.62 0.00 38.53 2.69
2417 2800 6.128499 CGTGTGTAGTTTCCGGAATAAATTCA 60.128 38.462 19.62 11.09 38.53 2.57
2418 2801 6.091169 TCGTGTGTAGTTTCCGGAATAAATTC 59.909 38.462 19.62 8.62 36.08 2.17
2419 2802 5.933463 TCGTGTGTAGTTTCCGGAATAAATT 59.067 36.000 19.62 2.38 0.00 1.82
2420 2803 5.481105 TCGTGTGTAGTTTCCGGAATAAAT 58.519 37.500 19.62 5.83 0.00 1.40
2421 2804 4.880759 TCGTGTGTAGTTTCCGGAATAAA 58.119 39.130 19.62 0.00 0.00 1.40
2422 2805 4.022068 ACTCGTGTGTAGTTTCCGGAATAA 60.022 41.667 19.62 0.00 0.00 1.40
2423 2806 3.507233 ACTCGTGTGTAGTTTCCGGAATA 59.493 43.478 19.62 5.46 0.00 1.75
2424 2807 2.298163 ACTCGTGTGTAGTTTCCGGAAT 59.702 45.455 19.62 6.63 0.00 3.01
2425 2808 1.682854 ACTCGTGTGTAGTTTCCGGAA 59.317 47.619 14.35 14.35 0.00 4.30
2426 2809 1.001048 CACTCGTGTGTAGTTTCCGGA 60.001 52.381 0.00 0.00 39.24 5.14
2427 2810 1.415374 CACTCGTGTGTAGTTTCCGG 58.585 55.000 9.42 0.00 39.24 5.14
2439 2822 3.914312 AGTACTCCATCAAACACTCGTG 58.086 45.455 0.00 0.00 0.00 4.35
2440 2823 5.916661 ATAGTACTCCATCAAACACTCGT 57.083 39.130 0.00 0.00 0.00 4.18
2449 2832 9.392259 CCTCGTACATTATATAGTACTCCATCA 57.608 37.037 0.00 0.00 38.69 3.07
2450 2833 9.393512 ACCTCGTACATTATATAGTACTCCATC 57.606 37.037 0.00 0.00 38.69 3.51
2451 2834 9.750783 AACCTCGTACATTATATAGTACTCCAT 57.249 33.333 0.00 0.00 38.69 3.41
2461 2844 9.998106 AATGAGCTTTAACCTCGTACATTATAT 57.002 29.630 0.00 0.00 31.98 0.86
2462 2845 9.826574 AAATGAGCTTTAACCTCGTACATTATA 57.173 29.630 0.00 0.00 31.98 0.98
2463 2846 8.732746 AAATGAGCTTTAACCTCGTACATTAT 57.267 30.769 0.00 0.00 31.98 1.28
2464 2847 9.656040 TTAAATGAGCTTTAACCTCGTACATTA 57.344 29.630 0.00 0.00 34.99 1.90
2465 2848 8.556213 TTAAATGAGCTTTAACCTCGTACATT 57.444 30.769 0.00 0.00 34.99 2.71
2466 2849 8.732746 ATTAAATGAGCTTTAACCTCGTACAT 57.267 30.769 0.00 0.00 41.02 2.29
2467 2850 8.038944 AGATTAAATGAGCTTTAACCTCGTACA 58.961 33.333 0.00 0.00 41.02 2.90
2468 2851 8.421673 AGATTAAATGAGCTTTAACCTCGTAC 57.578 34.615 0.00 0.00 41.02 3.67
2469 2852 9.095065 GAAGATTAAATGAGCTTTAACCTCGTA 57.905 33.333 0.00 0.00 41.02 3.43
2470 2853 7.201530 CGAAGATTAAATGAGCTTTAACCTCGT 60.202 37.037 0.00 0.00 41.02 4.18
2471 2854 7.119997 CGAAGATTAAATGAGCTTTAACCTCG 58.880 38.462 0.00 0.00 41.02 4.63
2472 2855 6.907748 GCGAAGATTAAATGAGCTTTAACCTC 59.092 38.462 0.00 0.00 41.02 3.85
2473 2856 6.786207 GCGAAGATTAAATGAGCTTTAACCT 58.214 36.000 0.00 0.00 41.02 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.