Multiple sequence alignment - TraesCS5A01G384000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G384000 chr5A 100.000 2816 0 0 771 3586 581622695 581619880 0.000000e+00 5201.0
1 TraesCS5A01G384000 chr5A 100.000 171 0 0 1 171 581623465 581623295 2.080000e-82 316.0
2 TraesCS5A01G384000 chr5A 93.413 167 11 0 2 168 375292109 375292275 7.690000e-62 248.0
3 TraesCS5A01G384000 chr5A 81.081 185 24 10 3229 3410 24762625 24762801 1.740000e-28 137.0
4 TraesCS5A01G384000 chr5A 100.000 30 0 0 3076 3105 500100794 500100823 5.000000e-04 56.5
5 TraesCS5A01G384000 chr5B 94.501 1364 55 12 1538 2900 567775721 567774377 0.000000e+00 2085.0
6 TraesCS5A01G384000 chr5B 95.062 729 33 3 803 1531 567776720 567775995 0.000000e+00 1144.0
7 TraesCS5A01G384000 chr5B 92.233 206 10 4 2923 3128 567773653 567773454 1.630000e-73 287.0
8 TraesCS5A01G384000 chr5B 94.697 132 7 0 1312 1443 580125799 580125668 4.690000e-49 206.0
9 TraesCS5A01G384000 chr5B 79.791 287 30 19 3129 3401 418556665 418556393 2.200000e-42 183.0
10 TraesCS5A01G384000 chr5B 77.994 309 47 19 3129 3428 38094566 38094862 1.320000e-39 174.0
11 TraesCS5A01G384000 chr5D 95.116 1249 48 9 1538 2784 461876987 461875750 0.000000e+00 1956.0
12 TraesCS5A01G384000 chr5D 95.473 729 31 2 803 1531 461877839 461877113 0.000000e+00 1162.0
13 TraesCS5A01G384000 chr5D 88.785 321 13 8 2797 3108 461875701 461875395 4.370000e-99 372.0
14 TraesCS5A01G384000 chr4A 86.825 463 36 15 3129 3586 15936631 15937073 8.940000e-136 494.0
15 TraesCS5A01G384000 chr6A 88.563 341 15 9 2797 3128 429064242 429063917 3.360000e-105 392.0
16 TraesCS5A01G384000 chr6A 87.500 176 14 6 2609 2784 429064458 429064291 2.820000e-46 196.0
17 TraesCS5A01G384000 chr6A 100.000 30 0 0 3076 3105 382905578 382905607 5.000000e-04 56.5
18 TraesCS5A01G384000 chr6A 100.000 30 0 0 3076 3105 516457679 516457650 5.000000e-04 56.5
19 TraesCS5A01G384000 chr1A 88.563 341 15 9 2797 3128 465928294 465927969 3.360000e-105 392.0
20 TraesCS5A01G384000 chr1A 87.640 178 10 8 2609 2784 465928510 465928343 2.820000e-46 196.0
21 TraesCS5A01G384000 chr6B 87.097 341 20 11 2797 3128 550653919 550653594 7.320000e-97 364.0
22 TraesCS5A01G384000 chr6B 81.797 434 53 18 3129 3552 162611382 162611799 1.230000e-89 340.0
23 TraesCS5A01G384000 chr6B 80.645 434 58 17 3129 3552 709006538 709006121 2.690000e-81 313.0
24 TraesCS5A01G384000 chr3D 81.922 437 61 13 3129 3552 511941776 511942207 1.580000e-93 353.0
25 TraesCS5A01G384000 chr3D 94.643 168 9 0 2 169 515672182 515672015 9.880000e-66 261.0
26 TraesCS5A01G384000 chr1B 80.831 433 57 17 3129 3551 575156820 575156404 2.080000e-82 316.0
27 TraesCS5A01G384000 chr6D 95.238 168 8 0 2 169 41924401 41924568 2.120000e-67 267.0
28 TraesCS5A01G384000 chr6D 94.083 169 10 0 1 169 430885301 430885469 1.280000e-64 257.0
29 TraesCS5A01G384000 chr6D 94.048 168 10 0 2 169 347439698 347439865 4.590000e-64 255.0
30 TraesCS5A01G384000 chr4B 78.670 436 62 21 3129 3552 618186656 618186240 9.880000e-66 261.0
31 TraesCS5A01G384000 chr3B 84.307 274 31 10 3132 3396 775490774 775490504 1.280000e-64 257.0
32 TraesCS5A01G384000 chr3B 78.889 90 18 1 3129 3217 418066465 418066554 3.870000e-05 60.2
33 TraesCS5A01G384000 chr4D 94.048 168 10 0 2 169 119369553 119369720 4.590000e-64 255.0
34 TraesCS5A01G384000 chr4D 79.151 259 38 13 3196 3450 328076076 328076322 7.960000e-37 165.0
35 TraesCS5A01G384000 chr3A 93.976 166 10 0 2 167 40245876 40245711 5.940000e-63 252.0
36 TraesCS5A01G384000 chr2D 93.491 169 10 1 2 169 500667005 500667173 2.140000e-62 250.0
37 TraesCS5A01G384000 chr1D 93.491 169 10 1 2 169 278102261 278102429 2.140000e-62 250.0
38 TraesCS5A01G384000 chr2B 79.655 290 42 12 3126 3405 123263056 123263338 3.650000e-45 193.0
39 TraesCS5A01G384000 chr2B 91.912 136 10 1 1309 1443 262908208 262908073 4.730000e-44 189.0
40 TraesCS5A01G384000 chr7D 92.424 132 10 0 1312 1443 403146440 403146571 4.730000e-44 189.0
41 TraesCS5A01G384000 chr2A 100.000 30 0 0 3076 3105 734823322 734823351 5.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G384000 chr5A 581619880 581623465 3585 True 2758.500000 5201 100.000000 1 3586 2 chr5A.!!$R1 3585
1 TraesCS5A01G384000 chr5B 567773454 567776720 3266 True 1172.000000 2085 93.932000 803 3128 3 chr5B.!!$R3 2325
2 TraesCS5A01G384000 chr5D 461875395 461877839 2444 True 1163.333333 1956 93.124667 803 3108 3 chr5D.!!$R1 2305
3 TraesCS5A01G384000 chr6A 429063917 429064458 541 True 294.000000 392 88.031500 2609 3128 2 chr6A.!!$R2 519
4 TraesCS5A01G384000 chr1A 465927969 465928510 541 True 294.000000 392 88.101500 2609 3128 2 chr1A.!!$R1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.033228 CGATGCAGGCCCAACAAAAA 59.967 50.0 0.0 0.0 0.0 1.94 F
857 858 0.034477 CATCTAAACCCCGCCAACCT 60.034 55.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1516 0.321671 ACTGCAACGCTGTCTATGGT 59.678 50.0 0.0 0.0 35.96 3.55 R
2844 3190 0.875474 CAAAGCCCTTTGTGGTTGCG 60.875 55.0 11.6 0.0 43.52 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.869440 CTCAGCCTGGCTCGCGAG 62.869 72.222 31.37 31.37 36.40 5.03
56 57 4.441695 CAGCCTGGCTCGCGAGAA 62.442 66.667 38.74 23.94 41.32 2.87
57 58 3.695606 AGCCTGGCTCGCGAGAAA 61.696 61.111 38.74 23.58 41.32 2.52
58 59 3.491652 GCCTGGCTCGCGAGAAAC 61.492 66.667 38.74 26.01 41.32 2.78
59 60 2.262915 CCTGGCTCGCGAGAAACT 59.737 61.111 38.74 0.00 41.32 2.66
60 61 2.097038 CCTGGCTCGCGAGAAACTG 61.097 63.158 38.74 26.67 41.32 3.16
61 62 2.734673 CTGGCTCGCGAGAAACTGC 61.735 63.158 38.74 22.87 41.32 4.40
62 63 3.491652 GGCTCGCGAGAAACTGCC 61.492 66.667 38.74 27.66 39.96 4.85
63 64 3.843240 GCTCGCGAGAAACTGCCG 61.843 66.667 38.74 11.21 41.32 5.69
64 65 2.126463 CTCGCGAGAAACTGCCGA 60.126 61.111 32.06 0.00 41.32 5.54
65 66 1.517257 CTCGCGAGAAACTGCCGAT 60.517 57.895 32.06 0.00 41.32 4.18
66 67 1.475441 CTCGCGAGAAACTGCCGATC 61.475 60.000 32.06 0.00 41.32 3.69
67 68 2.517450 CGCGAGAAACTGCCGATCC 61.517 63.158 0.00 0.00 0.00 3.36
68 69 2.517450 GCGAGAAACTGCCGATCCG 61.517 63.158 0.00 0.00 0.00 4.18
69 70 1.138883 CGAGAAACTGCCGATCCGA 59.861 57.895 0.00 0.00 0.00 4.55
70 71 0.867753 CGAGAAACTGCCGATCCGAG 60.868 60.000 0.00 0.00 0.00 4.63
71 72 0.528684 GAGAAACTGCCGATCCGAGG 60.529 60.000 0.00 0.00 0.00 4.63
72 73 1.521681 GAAACTGCCGATCCGAGGG 60.522 63.158 0.00 0.00 0.00 4.30
73 74 2.240162 GAAACTGCCGATCCGAGGGT 62.240 60.000 0.00 0.00 0.00 4.34
74 75 1.838073 AAACTGCCGATCCGAGGGTT 61.838 55.000 0.00 0.00 0.00 4.11
75 76 1.838073 AACTGCCGATCCGAGGGTTT 61.838 55.000 0.00 0.00 0.00 3.27
76 77 1.521681 CTGCCGATCCGAGGGTTTC 60.522 63.158 0.00 0.00 0.00 2.78
77 78 2.203029 GCCGATCCGAGGGTTTCC 60.203 66.667 0.00 0.00 0.00 3.13
78 79 3.026431 GCCGATCCGAGGGTTTCCA 62.026 63.158 0.00 0.00 34.83 3.53
79 80 1.144057 CCGATCCGAGGGTTTCCAG 59.856 63.158 0.00 0.00 34.83 3.86
80 81 1.521681 CGATCCGAGGGTTTCCAGC 60.522 63.158 0.00 0.00 34.83 4.85
81 82 1.521681 GATCCGAGGGTTTCCAGCG 60.522 63.158 0.00 0.00 34.83 5.18
82 83 1.956629 GATCCGAGGGTTTCCAGCGA 61.957 60.000 0.00 0.00 35.89 4.93
83 84 1.961180 ATCCGAGGGTTTCCAGCGAG 61.961 60.000 0.00 0.00 35.89 5.03
84 85 2.815647 CGAGGGTTTCCAGCGAGC 60.816 66.667 0.00 0.00 35.89 5.03
85 86 2.436824 GAGGGTTTCCAGCGAGCC 60.437 66.667 0.00 0.00 34.83 4.70
86 87 3.249189 AGGGTTTCCAGCGAGCCA 61.249 61.111 0.00 0.00 35.91 4.75
87 88 2.747855 GGGTTTCCAGCGAGCCAG 60.748 66.667 0.00 0.00 33.69 4.85
88 89 2.747855 GGTTTCCAGCGAGCCAGG 60.748 66.667 0.00 0.00 0.00 4.45
89 90 3.435186 GTTTCCAGCGAGCCAGGC 61.435 66.667 1.84 1.84 0.00 4.85
90 91 3.640407 TTTCCAGCGAGCCAGGCT 61.640 61.111 16.12 16.12 43.88 4.58
103 104 2.035312 AGGCTCTGGGCTGCTTTG 59.965 61.111 0.00 0.00 46.90 2.77
104 105 2.034687 GGCTCTGGGCTGCTTTGA 59.965 61.111 0.00 0.00 41.46 2.69
105 106 2.045131 GGCTCTGGGCTGCTTTGAG 61.045 63.158 0.00 5.85 41.46 3.02
106 107 1.002868 GCTCTGGGCTGCTTTGAGA 60.003 57.895 15.98 5.73 38.06 3.27
107 108 0.607489 GCTCTGGGCTGCTTTGAGAA 60.607 55.000 15.98 0.00 38.06 2.87
108 109 1.451067 CTCTGGGCTGCTTTGAGAAG 58.549 55.000 0.00 0.00 35.92 2.85
126 127 3.142162 CATGCGATGCAGGCCCAA 61.142 61.111 0.00 0.00 43.65 4.12
127 128 3.142838 ATGCGATGCAGGCCCAAC 61.143 61.111 0.00 0.00 43.65 3.77
128 129 3.942377 ATGCGATGCAGGCCCAACA 62.942 57.895 0.00 0.00 43.65 3.33
129 130 3.372730 GCGATGCAGGCCCAACAA 61.373 61.111 0.00 0.00 0.00 2.83
130 131 2.929903 GCGATGCAGGCCCAACAAA 61.930 57.895 0.00 0.00 0.00 2.83
131 132 1.664873 CGATGCAGGCCCAACAAAA 59.335 52.632 0.00 0.00 0.00 2.44
132 133 0.033228 CGATGCAGGCCCAACAAAAA 59.967 50.000 0.00 0.00 0.00 1.94
152 153 3.401033 AAATAAGGCAACCAAACAGGC 57.599 42.857 0.00 0.00 43.14 4.85
153 154 1.266178 ATAAGGCAACCAAACAGGCC 58.734 50.000 0.00 0.00 46.77 5.19
155 156 3.051210 GGCAACCAAACAGGCCTC 58.949 61.111 0.00 0.00 43.09 4.70
156 157 1.531602 GGCAACCAAACAGGCCTCT 60.532 57.895 0.00 0.00 43.09 3.69
157 158 1.527433 GGCAACCAAACAGGCCTCTC 61.527 60.000 0.00 0.00 43.09 3.20
158 159 1.527433 GCAACCAAACAGGCCTCTCC 61.527 60.000 0.00 0.00 43.14 3.71
159 160 0.895559 CAACCAAACAGGCCTCTCCC 60.896 60.000 0.00 0.00 43.14 4.30
160 161 1.068352 AACCAAACAGGCCTCTCCCT 61.068 55.000 0.00 0.00 43.14 4.20
161 162 1.068352 ACCAAACAGGCCTCTCCCTT 61.068 55.000 0.00 0.00 43.14 3.95
162 163 0.322906 CCAAACAGGCCTCTCCCTTC 60.323 60.000 0.00 0.00 31.24 3.46
163 164 0.322906 CAAACAGGCCTCTCCCTTCC 60.323 60.000 0.00 0.00 31.24 3.46
164 165 1.501654 AAACAGGCCTCTCCCTTCCC 61.502 60.000 0.00 0.00 31.24 3.97
165 166 3.474570 CAGGCCTCTCCCTTCCCG 61.475 72.222 0.00 0.00 31.24 5.14
170 171 4.521062 CTCTCCCTTCCCGCGCAG 62.521 72.222 8.75 0.00 0.00 5.18
813 814 0.443869 CGCGACTGGAATTGAACAGG 59.556 55.000 0.00 0.00 39.00 4.00
830 831 0.742281 AGGCAGTTATGTGCGCTCAG 60.742 55.000 17.93 4.89 45.00 3.35
840 841 2.202987 GCGCTCAGCTACCAGCAT 60.203 61.111 0.00 0.00 45.56 3.79
848 849 2.170607 TCAGCTACCAGCATCTAAACCC 59.829 50.000 0.38 0.00 45.56 4.11
857 858 0.034477 CATCTAAACCCCGCCAACCT 60.034 55.000 0.00 0.00 0.00 3.50
859 860 1.378119 CTAAACCCCGCCAACCTCC 60.378 63.158 0.00 0.00 0.00 4.30
902 903 3.440522 CGATCTACTTATGCTCCGGATCA 59.559 47.826 10.98 10.98 0.00 2.92
934 935 3.050275 GCGCCAGTGAACCTGACC 61.050 66.667 0.00 0.00 44.49 4.02
936 937 3.050275 GCCAGTGAACCTGACCGC 61.050 66.667 0.00 0.00 44.49 5.68
965 966 0.322636 TCCTCACTCACTCGTCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
1492 1493 6.665680 CCAGGTGCCTACTAATCTCATACTAT 59.334 42.308 0.00 0.00 0.00 2.12
1506 1507 8.649973 ATCTCATACTATTTCTTCCGTTCAAC 57.350 34.615 0.00 0.00 0.00 3.18
1515 1516 1.798223 CTTCCGTTCAACGCTTCATGA 59.202 47.619 3.77 0.00 40.91 3.07
1525 1526 3.170791 ACGCTTCATGACCATAGACAG 57.829 47.619 0.00 0.00 0.00 3.51
1526 1527 1.863454 CGCTTCATGACCATAGACAGC 59.137 52.381 0.00 0.00 0.00 4.40
1531 1532 1.328680 CATGACCATAGACAGCGTTGC 59.671 52.381 0.00 0.00 0.00 4.17
1532 1533 0.320050 TGACCATAGACAGCGTTGCA 59.680 50.000 0.00 0.00 0.00 4.08
1533 1534 1.002366 GACCATAGACAGCGTTGCAG 58.998 55.000 0.00 0.00 0.00 4.41
1534 1535 0.321671 ACCATAGACAGCGTTGCAGT 59.678 50.000 0.00 0.00 0.00 4.40
1535 1536 0.723414 CCATAGACAGCGTTGCAGTG 59.277 55.000 0.00 0.00 0.00 3.66
1592 1902 1.419374 GTGGAGTAGTTGCACGTCAG 58.581 55.000 0.00 0.00 38.41 3.51
1617 1927 2.002586 CTCAGGTCGAATGAATGCGTT 58.997 47.619 0.00 0.00 0.00 4.84
1624 1934 4.436852 GGTCGAATGAATGCGTTACATGTT 60.437 41.667 2.30 0.00 39.60 2.71
1961 2271 2.943653 GCAACGTTCCACTTCCCG 59.056 61.111 0.00 0.00 0.00 5.14
2140 2450 3.455469 GGGGTACTACGGCAGCGT 61.455 66.667 0.00 0.00 0.00 5.07
2372 2682 3.384532 GAGTTCGTGGCCGGGGTA 61.385 66.667 2.18 0.00 33.95 3.69
2593 2903 0.537188 AAGGCACAGTAGGATCCACG 59.463 55.000 15.82 8.99 0.00 4.94
2642 2952 4.921470 TTCACTGTATGTTCGCTTTAGC 57.079 40.909 0.00 0.00 37.78 3.09
2665 2975 1.605710 GATGGTGATGCCTTCGAATGG 59.394 52.381 0.00 3.72 38.35 3.16
2684 2994 4.715534 TGGTTTTGATGTACTTCCCTGA 57.284 40.909 6.32 0.00 0.00 3.86
2688 2998 6.177610 GGTTTTGATGTACTTCCCTGATGTA 58.822 40.000 6.32 0.00 0.00 2.29
2694 3004 4.513442 TGTACTTCCCTGATGTAATGTGC 58.487 43.478 0.00 0.00 0.00 4.57
2712 3022 1.798223 TGCACGTGAATGCTAGTGTTC 59.202 47.619 22.23 0.00 46.28 3.18
2713 3023 2.069273 GCACGTGAATGCTAGTGTTCT 58.931 47.619 22.23 0.00 42.62 3.01
2714 3024 2.159787 GCACGTGAATGCTAGTGTTCTG 60.160 50.000 22.23 5.98 42.62 3.02
2715 3025 2.413112 CACGTGAATGCTAGTGTTCTGG 59.587 50.000 10.90 5.34 0.00 3.86
2734 3044 6.104146 TCTGGTGTTGTTATTGCTGTAGTA 57.896 37.500 0.00 0.00 0.00 1.82
2735 3045 6.163476 TCTGGTGTTGTTATTGCTGTAGTAG 58.837 40.000 0.00 0.00 0.00 2.57
2736 3046 5.860611 TGGTGTTGTTATTGCTGTAGTAGT 58.139 37.500 0.00 0.00 0.00 2.73
2737 3047 6.292923 TGGTGTTGTTATTGCTGTAGTAGTT 58.707 36.000 0.00 0.00 0.00 2.24
2738 3048 6.768861 TGGTGTTGTTATTGCTGTAGTAGTTT 59.231 34.615 0.00 0.00 0.00 2.66
2787 3097 6.455360 ACATTCATGGTCATGGTGTTATTC 57.545 37.500 10.61 0.00 39.24 1.75
2790 3100 7.283127 ACATTCATGGTCATGGTGTTATTCTAC 59.717 37.037 10.61 0.00 39.24 2.59
2794 3104 7.344612 TCATGGTCATGGTGTTATTCTACTAGT 59.655 37.037 10.61 0.00 39.24 2.57
2795 3105 8.638873 CATGGTCATGGTGTTATTCTACTAGTA 58.361 37.037 1.89 1.89 35.24 1.82
2825 3171 9.573133 CAAACTTCGGATTTATTAAGATTTGCT 57.427 29.630 0.00 0.00 0.00 3.91
2844 3190 2.739379 GCTAACTCCACTGCAGAAGTTC 59.261 50.000 25.80 15.38 36.83 3.01
2855 3201 1.202245 GCAGAAGTTCGCAACCACAAA 60.202 47.619 12.71 0.00 0.00 2.83
2915 3277 9.281371 TCGTAGTACTACTACTAGTATAACCGA 57.719 37.037 26.36 13.16 46.68 4.69
2916 3278 9.332301 CGTAGTACTACTACTAGTATAACCGAC 57.668 40.741 26.36 1.19 46.68 4.79
2936 4006 7.085746 ACCGACTTTATTTTATTTTTGGACCG 58.914 34.615 0.00 0.00 0.00 4.79
3135 4205 9.543783 CACCTTAGTAATAGATACTGGAAAACC 57.456 37.037 0.00 0.00 44.64 3.27
3136 4206 8.712103 ACCTTAGTAATAGATACTGGAAAACCC 58.288 37.037 0.00 0.00 44.64 4.11
3137 4207 8.935741 CCTTAGTAATAGATACTGGAAAACCCT 58.064 37.037 0.00 0.00 44.64 4.34
3144 4214 9.628500 AATAGATACTGGAAAACCCTATTTGAC 57.372 33.333 0.00 0.00 35.38 3.18
3145 4215 6.113411 AGATACTGGAAAACCCTATTTGACG 58.887 40.000 0.00 0.00 35.38 4.35
3146 4216 2.817844 ACTGGAAAACCCTATTTGACGC 59.182 45.455 0.00 0.00 35.38 5.19
3147 4217 2.817258 CTGGAAAACCCTATTTGACGCA 59.183 45.455 0.00 0.00 35.38 5.24
3148 4218 3.426615 TGGAAAACCCTATTTGACGCAT 58.573 40.909 0.00 0.00 35.38 4.73
3149 4219 3.829601 TGGAAAACCCTATTTGACGCATT 59.170 39.130 0.00 0.00 35.38 3.56
3150 4220 4.282195 TGGAAAACCCTATTTGACGCATTT 59.718 37.500 0.00 0.00 35.38 2.32
3151 4221 5.221541 TGGAAAACCCTATTTGACGCATTTT 60.222 36.000 0.00 0.00 35.38 1.82
3152 4222 5.120053 GGAAAACCCTATTTGACGCATTTTG 59.880 40.000 0.00 0.00 0.00 2.44
3153 4223 3.230743 ACCCTATTTGACGCATTTTGC 57.769 42.857 0.00 0.00 40.69 3.68
3165 4235 1.971962 GCATTTTGCGTCAAAGAGTCG 59.028 47.619 5.42 0.00 34.72 4.18
3169 4239 2.733593 GCGTCAAAGAGTCGCCGT 60.734 61.111 0.00 0.00 46.61 5.68
3170 4240 1.443194 GCGTCAAAGAGTCGCCGTA 60.443 57.895 0.00 0.00 46.61 4.02
3171 4241 0.801067 GCGTCAAAGAGTCGCCGTAT 60.801 55.000 0.00 0.00 46.61 3.06
3172 4242 1.189403 CGTCAAAGAGTCGCCGTATC 58.811 55.000 0.00 0.00 0.00 2.24
3173 4243 1.189403 GTCAAAGAGTCGCCGTATCG 58.811 55.000 0.00 0.00 0.00 2.92
3174 4244 0.524816 TCAAAGAGTCGCCGTATCGC 60.525 55.000 0.00 0.00 0.00 4.58
3175 4245 0.800683 CAAAGAGTCGCCGTATCGCA 60.801 55.000 0.00 0.00 0.00 5.10
3176 4246 0.102481 AAAGAGTCGCCGTATCGCAT 59.898 50.000 0.00 0.00 0.00 4.73
3177 4247 0.949397 AAGAGTCGCCGTATCGCATA 59.051 50.000 0.00 0.00 0.00 3.14
3178 4248 0.517755 AGAGTCGCCGTATCGCATAG 59.482 55.000 0.00 0.00 0.00 2.23
3179 4249 0.454620 GAGTCGCCGTATCGCATAGG 60.455 60.000 0.00 0.00 0.00 2.57
3180 4250 2.087009 GTCGCCGTATCGCATAGGC 61.087 63.158 0.00 0.00 45.67 3.93
3190 4260 3.440151 GCATAGGCGGACGACCTA 58.560 61.111 14.11 14.11 43.80 3.08
3191 4261 1.286260 GCATAGGCGGACGACCTAG 59.714 63.158 15.96 11.08 42.94 3.02
3192 4262 1.170919 GCATAGGCGGACGACCTAGA 61.171 60.000 15.96 2.24 42.94 2.43
3193 4263 0.875728 CATAGGCGGACGACCTAGAG 59.124 60.000 15.96 10.00 42.94 2.43
3194 4264 0.890090 ATAGGCGGACGACCTAGAGC 60.890 60.000 15.96 0.00 42.94 4.09
3195 4265 4.253257 GGCGGACGACCTAGAGCG 62.253 72.222 1.72 0.00 0.00 5.03
3196 4266 4.908877 GCGGACGACCTAGAGCGC 62.909 72.222 0.00 0.00 0.00 5.92
3197 4267 4.592936 CGGACGACCTAGAGCGCG 62.593 72.222 0.00 0.00 0.00 6.86
3198 4268 3.200593 GGACGACCTAGAGCGCGA 61.201 66.667 12.10 0.00 0.00 5.87
3199 4269 2.023041 GACGACCTAGAGCGCGAC 59.977 66.667 12.10 2.22 0.00 5.19
3200 4270 2.436292 ACGACCTAGAGCGCGACT 60.436 61.111 12.10 11.18 0.00 4.18
3201 4271 1.979831 GACGACCTAGAGCGCGACTT 61.980 60.000 12.10 0.00 0.00 3.01
3202 4272 1.583967 CGACCTAGAGCGCGACTTG 60.584 63.158 12.10 9.23 0.00 3.16
3203 4273 1.226717 GACCTAGAGCGCGACTTGG 60.227 63.158 25.51 25.51 36.60 3.61
3204 4274 2.105128 CCTAGAGCGCGACTTGGG 59.895 66.667 21.99 16.73 0.00 4.12
3220 4290 2.033294 GGCCAGCCCAGCTATAGC 59.967 66.667 17.33 17.33 36.40 2.97
3235 4305 5.373981 GCTATAGCGTATGTACAGGTTCT 57.626 43.478 9.40 0.00 0.00 3.01
3236 4306 5.154932 GCTATAGCGTATGTACAGGTTCTG 58.845 45.833 9.40 0.00 37.52 3.02
3237 4307 2.961526 AGCGTATGTACAGGTTCTGG 57.038 50.000 0.33 0.00 35.51 3.86
3238 4308 2.176889 AGCGTATGTACAGGTTCTGGT 58.823 47.619 0.33 0.00 35.51 4.00
3239 4309 2.565834 AGCGTATGTACAGGTTCTGGTT 59.434 45.455 0.33 0.00 35.51 3.67
3240 4310 3.007614 AGCGTATGTACAGGTTCTGGTTT 59.992 43.478 0.33 0.00 35.51 3.27
3241 4311 3.749609 GCGTATGTACAGGTTCTGGTTTT 59.250 43.478 0.33 0.00 35.51 2.43
3242 4312 4.378046 GCGTATGTACAGGTTCTGGTTTTG 60.378 45.833 0.33 0.00 35.51 2.44
3243 4313 4.753107 CGTATGTACAGGTTCTGGTTTTGT 59.247 41.667 0.33 0.00 35.51 2.83
3244 4314 5.333798 CGTATGTACAGGTTCTGGTTTTGTG 60.334 44.000 0.33 0.00 35.51 3.33
3245 4315 4.223556 TGTACAGGTTCTGGTTTTGTGA 57.776 40.909 0.00 0.00 35.51 3.58
3246 4316 4.590918 TGTACAGGTTCTGGTTTTGTGAA 58.409 39.130 0.00 0.00 35.51 3.18
3247 4317 4.396790 TGTACAGGTTCTGGTTTTGTGAAC 59.603 41.667 0.00 0.00 39.26 3.18
3252 4322 4.983671 GTTCTGGTTTTGTGAACCTTCT 57.016 40.909 9.15 0.00 40.88 2.85
3254 4324 6.061231 GTTCTGGTTTTGTGAACCTTCTAG 57.939 41.667 9.15 0.00 40.88 2.43
3255 4325 5.623956 TCTGGTTTTGTGAACCTTCTAGA 57.376 39.130 9.15 0.00 40.88 2.43
3256 4326 5.611374 TCTGGTTTTGTGAACCTTCTAGAG 58.389 41.667 9.15 0.00 40.88 2.43
3268 4338 1.342819 CTTCTAGAGGATTCCCAGCCG 59.657 57.143 0.00 0.00 33.88 5.52
3269 4339 0.470080 TCTAGAGGATTCCCAGCCGG 60.470 60.000 0.00 0.00 33.88 6.13
3270 4340 0.760945 CTAGAGGATTCCCAGCCGGT 60.761 60.000 1.90 0.00 33.88 5.28
3271 4341 0.326238 TAGAGGATTCCCAGCCGGTT 60.326 55.000 1.90 0.00 33.88 4.44
3272 4342 1.208165 AGAGGATTCCCAGCCGGTTT 61.208 55.000 1.90 0.00 33.88 3.27
3273 4343 0.323451 GAGGATTCCCAGCCGGTTTT 60.323 55.000 1.90 0.00 33.88 2.43
3274 4344 0.114364 AGGATTCCCAGCCGGTTTTT 59.886 50.000 1.90 0.00 33.88 1.94
3275 4345 1.356398 AGGATTCCCAGCCGGTTTTTA 59.644 47.619 1.90 0.00 33.88 1.52
3276 4346 1.475280 GGATTCCCAGCCGGTTTTTAC 59.525 52.381 1.90 0.00 0.00 2.01
3277 4347 2.443416 GATTCCCAGCCGGTTTTTACT 58.557 47.619 1.90 0.00 0.00 2.24
3278 4348 1.611519 TTCCCAGCCGGTTTTTACTG 58.388 50.000 1.90 0.00 0.00 2.74
3285 4355 2.432206 CCGGTTTTTACTGGCTTTGG 57.568 50.000 0.00 0.00 0.00 3.28
3286 4356 1.000394 CCGGTTTTTACTGGCTTTGGG 60.000 52.381 0.00 0.00 0.00 4.12
3287 4357 1.957877 CGGTTTTTACTGGCTTTGGGA 59.042 47.619 0.00 0.00 0.00 4.37
3288 4358 2.362717 CGGTTTTTACTGGCTTTGGGAA 59.637 45.455 0.00 0.00 0.00 3.97
3289 4359 3.724374 GGTTTTTACTGGCTTTGGGAAC 58.276 45.455 0.00 0.00 0.00 3.62
3305 4375 3.897141 GGAACCTTCTAGAAGTCCCTG 57.103 52.381 26.83 15.64 36.72 4.45
3306 4376 3.442076 GGAACCTTCTAGAAGTCCCTGA 58.558 50.000 26.83 0.00 36.72 3.86
3307 4377 3.838903 GGAACCTTCTAGAAGTCCCTGAA 59.161 47.826 26.83 0.00 36.72 3.02
3308 4378 4.322877 GGAACCTTCTAGAAGTCCCTGAAC 60.323 50.000 26.83 12.34 36.72 3.18
3309 4379 3.174779 ACCTTCTAGAAGTCCCTGAACC 58.825 50.000 26.83 0.00 36.72 3.62
3310 4380 2.166664 CCTTCTAGAAGTCCCTGAACCG 59.833 54.545 26.83 7.52 36.72 4.44
3311 4381 1.848652 TCTAGAAGTCCCTGAACCGG 58.151 55.000 0.00 0.00 0.00 5.28
3312 4382 1.076677 TCTAGAAGTCCCTGAACCGGT 59.923 52.381 0.00 0.00 0.00 5.28
3313 4383 1.477295 CTAGAAGTCCCTGAACCGGTC 59.523 57.143 8.04 1.72 0.00 4.79
3314 4384 0.178929 AGAAGTCCCTGAACCGGTCT 60.179 55.000 8.04 0.00 0.00 3.85
3315 4385 0.685660 GAAGTCCCTGAACCGGTCTT 59.314 55.000 8.04 4.56 0.00 3.01
3316 4386 1.071857 GAAGTCCCTGAACCGGTCTTT 59.928 52.381 8.04 0.00 0.00 2.52
3317 4387 2.019807 AGTCCCTGAACCGGTCTTTA 57.980 50.000 8.04 0.00 0.00 1.85
3318 4388 2.547990 AGTCCCTGAACCGGTCTTTAT 58.452 47.619 8.04 0.00 0.00 1.40
3319 4389 2.910977 AGTCCCTGAACCGGTCTTTATT 59.089 45.455 8.04 0.00 0.00 1.40
3320 4390 3.329814 AGTCCCTGAACCGGTCTTTATTT 59.670 43.478 8.04 0.00 0.00 1.40
3321 4391 4.077108 GTCCCTGAACCGGTCTTTATTTT 58.923 43.478 8.04 0.00 0.00 1.82
3322 4392 4.521639 GTCCCTGAACCGGTCTTTATTTTT 59.478 41.667 8.04 0.00 0.00 1.94
3323 4393 4.763279 TCCCTGAACCGGTCTTTATTTTTC 59.237 41.667 8.04 0.00 0.00 2.29
3324 4394 4.082408 CCCTGAACCGGTCTTTATTTTTCC 60.082 45.833 8.04 0.00 0.00 3.13
3325 4395 4.765339 CCTGAACCGGTCTTTATTTTTCCT 59.235 41.667 8.04 0.00 0.00 3.36
3326 4396 5.243060 CCTGAACCGGTCTTTATTTTTCCTT 59.757 40.000 8.04 0.00 0.00 3.36
3327 4397 6.239204 CCTGAACCGGTCTTTATTTTTCCTTT 60.239 38.462 8.04 0.00 0.00 3.11
3328 4398 7.040271 CCTGAACCGGTCTTTATTTTTCCTTTA 60.040 37.037 8.04 0.00 0.00 1.85
3329 4399 8.411991 TGAACCGGTCTTTATTTTTCCTTTAT 57.588 30.769 8.04 0.00 0.00 1.40
3330 4400 9.517868 TGAACCGGTCTTTATTTTTCCTTTATA 57.482 29.630 8.04 0.00 0.00 0.98
3363 4433 7.731882 TTTTCCTTTTTCCGTTTTTCTTTGT 57.268 28.000 0.00 0.00 0.00 2.83
3364 4434 7.731882 TTTCCTTTTTCCGTTTTTCTTTGTT 57.268 28.000 0.00 0.00 0.00 2.83
3365 4435 6.954616 TCCTTTTTCCGTTTTTCTTTGTTC 57.045 33.333 0.00 0.00 0.00 3.18
3366 4436 6.693466 TCCTTTTTCCGTTTTTCTTTGTTCT 58.307 32.000 0.00 0.00 0.00 3.01
3367 4437 6.809689 TCCTTTTTCCGTTTTTCTTTGTTCTC 59.190 34.615 0.00 0.00 0.00 2.87
3368 4438 6.811665 CCTTTTTCCGTTTTTCTTTGTTCTCT 59.188 34.615 0.00 0.00 0.00 3.10
3369 4439 7.009265 CCTTTTTCCGTTTTTCTTTGTTCTCTC 59.991 37.037 0.00 0.00 0.00 3.20
3370 4440 5.494632 TTCCGTTTTTCTTTGTTCTCTCC 57.505 39.130 0.00 0.00 0.00 3.71
3371 4441 4.777463 TCCGTTTTTCTTTGTTCTCTCCT 58.223 39.130 0.00 0.00 0.00 3.69
3372 4442 5.190677 TCCGTTTTTCTTTGTTCTCTCCTT 58.809 37.500 0.00 0.00 0.00 3.36
3373 4443 5.650703 TCCGTTTTTCTTTGTTCTCTCCTTT 59.349 36.000 0.00 0.00 0.00 3.11
3374 4444 6.152154 TCCGTTTTTCTTTGTTCTCTCCTTTT 59.848 34.615 0.00 0.00 0.00 2.27
3375 4445 6.811665 CCGTTTTTCTTTGTTCTCTCCTTTTT 59.188 34.615 0.00 0.00 0.00 1.94
3478 4548 8.795786 TTTTTGATAATTCCAACTTCGTTCAG 57.204 30.769 0.00 0.00 0.00 3.02
3479 4549 7.737972 TTTGATAATTCCAACTTCGTTCAGA 57.262 32.000 0.00 0.00 0.00 3.27
3480 4550 7.921786 TTGATAATTCCAACTTCGTTCAGAT 57.078 32.000 0.00 0.00 0.00 2.90
3481 4551 7.921786 TGATAATTCCAACTTCGTTCAGATT 57.078 32.000 0.00 0.00 0.00 2.40
3482 4552 8.335532 TGATAATTCCAACTTCGTTCAGATTT 57.664 30.769 0.00 0.00 0.00 2.17
3483 4553 8.450964 TGATAATTCCAACTTCGTTCAGATTTC 58.549 33.333 0.00 0.00 0.00 2.17
3484 4554 6.633500 AATTCCAACTTCGTTCAGATTTCA 57.367 33.333 0.00 0.00 0.00 2.69
3485 4555 6.633500 ATTCCAACTTCGTTCAGATTTCAA 57.367 33.333 0.00 0.00 0.00 2.69
3486 4556 6.443934 TTCCAACTTCGTTCAGATTTCAAA 57.556 33.333 0.00 0.00 0.00 2.69
3487 4557 6.443934 TCCAACTTCGTTCAGATTTCAAAA 57.556 33.333 0.00 0.00 0.00 2.44
3488 4558 6.857956 TCCAACTTCGTTCAGATTTCAAAAA 58.142 32.000 0.00 0.00 0.00 1.94
3579 4649 7.610865 ACTTTCAAAGTTTGGTCAAGATTTCA 58.389 30.769 20.71 0.00 39.04 2.69
3580 4650 8.093927 ACTTTCAAAGTTTGGTCAAGATTTCAA 58.906 29.630 20.71 3.20 39.04 2.69
3581 4651 8.839310 TTTCAAAGTTTGGTCAAGATTTCAAA 57.161 26.923 15.47 1.84 0.00 2.69
3582 4652 8.839310 TTCAAAGTTTGGTCAAGATTTCAAAA 57.161 26.923 15.47 0.00 32.01 2.44
3583 4653 8.839310 TCAAAGTTTGGTCAAGATTTCAAAAA 57.161 26.923 15.47 0.00 32.01 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.869440 CTCGCGAGCCAGGCTGAG 62.869 72.222 25.07 15.94 39.88 3.35
39 40 3.939837 TTTCTCGCGAGCCAGGCTG 62.940 63.158 30.97 12.65 39.88 4.85
40 41 3.695606 TTTCTCGCGAGCCAGGCT 61.696 61.111 30.97 16.12 43.88 4.58
41 42 3.491652 GTTTCTCGCGAGCCAGGC 61.492 66.667 30.97 14.51 0.00 4.85
42 43 2.097038 CAGTTTCTCGCGAGCCAGG 61.097 63.158 30.97 14.72 0.00 4.45
43 44 2.734673 GCAGTTTCTCGCGAGCCAG 61.735 63.158 30.97 18.15 0.00 4.85
44 45 2.738521 GCAGTTTCTCGCGAGCCA 60.739 61.111 30.97 17.10 0.00 4.75
45 46 3.491652 GGCAGTTTCTCGCGAGCC 61.492 66.667 30.97 23.82 34.71 4.70
46 47 3.843240 CGGCAGTTTCTCGCGAGC 61.843 66.667 30.97 18.79 0.00 5.03
47 48 1.475441 GATCGGCAGTTTCTCGCGAG 61.475 60.000 30.03 30.03 0.00 5.03
48 49 1.516386 GATCGGCAGTTTCTCGCGA 60.516 57.895 9.26 9.26 0.00 5.87
49 50 2.517450 GGATCGGCAGTTTCTCGCG 61.517 63.158 0.00 0.00 0.00 5.87
50 51 2.517450 CGGATCGGCAGTTTCTCGC 61.517 63.158 0.00 0.00 0.00 5.03
51 52 0.867753 CTCGGATCGGCAGTTTCTCG 60.868 60.000 0.00 0.00 0.00 4.04
52 53 0.528684 CCTCGGATCGGCAGTTTCTC 60.529 60.000 0.00 0.00 0.00 2.87
53 54 1.517832 CCTCGGATCGGCAGTTTCT 59.482 57.895 0.00 0.00 0.00 2.52
54 55 1.521681 CCCTCGGATCGGCAGTTTC 60.522 63.158 0.00 0.00 0.00 2.78
55 56 1.838073 AACCCTCGGATCGGCAGTTT 61.838 55.000 0.00 0.00 0.00 2.66
56 57 1.838073 AAACCCTCGGATCGGCAGTT 61.838 55.000 0.00 0.00 0.00 3.16
57 58 2.240162 GAAACCCTCGGATCGGCAGT 62.240 60.000 0.00 0.00 0.00 4.40
58 59 1.521681 GAAACCCTCGGATCGGCAG 60.522 63.158 0.00 0.00 0.00 4.85
59 60 2.582436 GAAACCCTCGGATCGGCA 59.418 61.111 0.00 0.00 0.00 5.69
60 61 2.203029 GGAAACCCTCGGATCGGC 60.203 66.667 0.00 0.00 0.00 5.54
61 62 1.144057 CTGGAAACCCTCGGATCGG 59.856 63.158 0.00 0.00 0.00 4.18
62 63 1.521681 GCTGGAAACCCTCGGATCG 60.522 63.158 0.00 0.00 0.00 3.69
63 64 1.521681 CGCTGGAAACCCTCGGATC 60.522 63.158 0.00 0.00 0.00 3.36
64 65 1.961180 CTCGCTGGAAACCCTCGGAT 61.961 60.000 0.00 0.00 0.00 4.18
65 66 2.602267 TCGCTGGAAACCCTCGGA 60.602 61.111 0.00 0.00 0.00 4.55
66 67 2.125512 CTCGCTGGAAACCCTCGG 60.126 66.667 0.00 0.00 0.00 4.63
67 68 2.815647 GCTCGCTGGAAACCCTCG 60.816 66.667 0.00 0.00 0.00 4.63
68 69 2.436824 GGCTCGCTGGAAACCCTC 60.437 66.667 0.00 0.00 0.00 4.30
69 70 3.249189 TGGCTCGCTGGAAACCCT 61.249 61.111 0.00 0.00 0.00 4.34
70 71 2.747855 CTGGCTCGCTGGAAACCC 60.748 66.667 0.00 0.00 0.00 4.11
71 72 2.747855 CCTGGCTCGCTGGAAACC 60.748 66.667 0.00 0.00 0.00 3.27
72 73 3.435186 GCCTGGCTCGCTGGAAAC 61.435 66.667 12.43 0.00 0.00 2.78
73 74 3.612247 GAGCCTGGCTCGCTGGAAA 62.612 63.158 31.03 0.00 45.85 3.13
74 75 4.087892 GAGCCTGGCTCGCTGGAA 62.088 66.667 31.03 0.00 45.85 3.53
85 86 2.035312 AAAGCAGCCCAGAGCCTG 59.965 61.111 0.00 0.00 45.47 4.85
86 87 2.035312 CAAAGCAGCCCAGAGCCT 59.965 61.111 0.00 0.00 45.47 4.58
87 88 2.034687 TCAAAGCAGCCCAGAGCC 59.965 61.111 0.00 0.00 45.47 4.70
88 89 0.607489 TTCTCAAAGCAGCCCAGAGC 60.607 55.000 0.00 0.00 44.25 4.09
89 90 1.451067 CTTCTCAAAGCAGCCCAGAG 58.549 55.000 0.00 0.00 0.00 3.35
90 91 3.639099 CTTCTCAAAGCAGCCCAGA 57.361 52.632 0.00 0.00 0.00 3.86
109 110 3.142162 TTGGGCCTGCATCGCATG 61.142 61.111 4.53 0.00 38.13 4.06
110 111 3.142838 GTTGGGCCTGCATCGCAT 61.143 61.111 4.53 0.00 38.13 4.73
111 112 4.657408 TGTTGGGCCTGCATCGCA 62.657 61.111 4.53 5.20 36.92 5.10
112 113 2.433231 TTTTGTTGGGCCTGCATCGC 62.433 55.000 4.53 0.00 0.00 4.58
113 114 0.033228 TTTTTGTTGGGCCTGCATCG 59.967 50.000 4.53 0.00 0.00 3.84
130 131 4.133820 GCCTGTTTGGTTGCCTTATTTTT 58.866 39.130 0.00 0.00 38.35 1.94
131 132 3.495983 GGCCTGTTTGGTTGCCTTATTTT 60.496 43.478 0.00 0.00 40.77 1.82
132 133 2.038426 GGCCTGTTTGGTTGCCTTATTT 59.962 45.455 0.00 0.00 40.77 1.40
133 134 1.623311 GGCCTGTTTGGTTGCCTTATT 59.377 47.619 0.00 0.00 40.77 1.40
134 135 1.266178 GGCCTGTTTGGTTGCCTTAT 58.734 50.000 0.00 0.00 40.77 1.73
135 136 2.740121 GGCCTGTTTGGTTGCCTTA 58.260 52.632 0.00 0.00 40.77 2.69
136 137 3.549730 GGCCTGTTTGGTTGCCTT 58.450 55.556 0.00 0.00 40.77 4.35
138 139 1.527433 GAGAGGCCTGTTTGGTTGCC 61.527 60.000 12.00 0.00 44.35 4.52
139 140 1.527433 GGAGAGGCCTGTTTGGTTGC 61.527 60.000 12.00 0.00 38.35 4.17
140 141 0.895559 GGGAGAGGCCTGTTTGGTTG 60.896 60.000 12.00 0.00 38.35 3.77
141 142 1.068352 AGGGAGAGGCCTGTTTGGTT 61.068 55.000 12.00 0.00 38.35 3.67
142 143 1.068352 AAGGGAGAGGCCTGTTTGGT 61.068 55.000 12.00 0.00 38.35 3.67
143 144 0.322906 GAAGGGAGAGGCCTGTTTGG 60.323 60.000 12.00 0.00 36.66 3.28
144 145 0.322906 GGAAGGGAGAGGCCTGTTTG 60.323 60.000 12.00 0.00 36.66 2.93
145 146 1.501654 GGGAAGGGAGAGGCCTGTTT 61.502 60.000 12.00 0.00 36.66 2.83
146 147 1.925972 GGGAAGGGAGAGGCCTGTT 60.926 63.158 12.00 0.00 36.66 3.16
147 148 2.285743 GGGAAGGGAGAGGCCTGT 60.286 66.667 12.00 5.74 36.66 4.00
148 149 3.474570 CGGGAAGGGAGAGGCCTG 61.475 72.222 12.00 0.00 36.66 4.85
153 154 4.521062 CTGCGCGGGAAGGGAGAG 62.521 72.222 8.83 0.00 34.27 3.20
789 790 3.065510 TGTTCAATTCCAGTCGCGAAAAA 59.934 39.130 12.06 3.00 0.00 1.94
790 791 2.614520 TGTTCAATTCCAGTCGCGAAAA 59.385 40.909 12.06 3.41 0.00 2.29
791 792 2.214347 TGTTCAATTCCAGTCGCGAAA 58.786 42.857 12.06 0.65 0.00 3.46
792 793 1.798223 CTGTTCAATTCCAGTCGCGAA 59.202 47.619 12.06 0.00 0.00 4.70
793 794 1.428448 CTGTTCAATTCCAGTCGCGA 58.572 50.000 3.71 3.71 0.00 5.87
794 795 0.443869 CCTGTTCAATTCCAGTCGCG 59.556 55.000 0.00 0.00 0.00 5.87
795 796 0.169009 GCCTGTTCAATTCCAGTCGC 59.831 55.000 0.00 0.00 0.00 5.19
796 797 1.466167 CTGCCTGTTCAATTCCAGTCG 59.534 52.381 0.00 0.00 0.00 4.18
797 798 2.508526 ACTGCCTGTTCAATTCCAGTC 58.491 47.619 0.00 0.00 0.00 3.51
798 799 2.664402 ACTGCCTGTTCAATTCCAGT 57.336 45.000 0.00 0.00 0.00 4.00
799 800 4.460382 ACATAACTGCCTGTTCAATTCCAG 59.540 41.667 0.00 0.00 39.89 3.86
800 801 4.218200 CACATAACTGCCTGTTCAATTCCA 59.782 41.667 0.00 0.00 39.89 3.53
801 802 4.737054 CACATAACTGCCTGTTCAATTCC 58.263 43.478 0.00 0.00 39.89 3.01
813 814 1.061570 GCTGAGCGCACATAACTGC 59.938 57.895 11.47 5.07 38.92 4.40
830 831 1.810412 CGGGGTTTAGATGCTGGTAGC 60.810 57.143 0.00 0.00 42.82 3.58
840 841 1.681076 GAGGTTGGCGGGGTTTAGA 59.319 57.895 0.00 0.00 0.00 2.10
857 858 2.307686 GGGAATTAATATGGCGGGAGGA 59.692 50.000 0.00 0.00 0.00 3.71
859 860 2.620627 GGGGGAATTAATATGGCGGGAG 60.621 54.545 0.00 0.00 0.00 4.30
965 966 1.518133 CGCGCAGAGGAAAGGAGAG 60.518 63.158 8.75 0.00 0.00 3.20
1389 1390 3.873883 ATCTCGTCGTCGCCGGAC 61.874 66.667 5.05 0.00 39.89 4.79
1390 1391 3.872728 CATCTCGTCGTCGCCGGA 61.873 66.667 5.05 0.00 36.96 5.14
1394 1395 2.278013 GGTCCATCTCGTCGTCGC 60.278 66.667 0.00 0.00 36.96 5.19
1492 1493 2.281517 TGAAGCGTTGAACGGAAGAAA 58.718 42.857 20.01 0.00 42.82 2.52
1506 1507 1.863454 GCTGTCTATGGTCATGAAGCG 59.137 52.381 0.00 0.00 0.00 4.68
1515 1516 0.321671 ACTGCAACGCTGTCTATGGT 59.678 50.000 0.00 0.00 35.96 3.55
1525 1526 3.026311 GCAACAGCACTGCAACGC 61.026 61.111 3.30 0.00 39.69 4.84
1526 1527 2.408428 TGCAACAGCACTGCAACG 59.592 55.556 3.30 0.00 46.47 4.10
1547 1857 4.387862 GCAATTCAATTCTTGGAGCTGTTG 59.612 41.667 0.00 0.00 0.00 3.33
1548 1858 4.282703 AGCAATTCAATTCTTGGAGCTGTT 59.717 37.500 0.00 0.00 0.00 3.16
1592 1902 4.551603 CGCATTCATTCGACCTGAGAAATC 60.552 45.833 0.00 0.00 0.00 2.17
1617 1927 5.714333 ACCAGTGGATAAATGCAAACATGTA 59.286 36.000 18.40 0.00 36.36 2.29
1624 1934 3.694072 GCTGTACCAGTGGATAAATGCAA 59.306 43.478 18.40 0.00 33.43 4.08
2451 2761 4.778415 CACGTCCCTCGCCGAGTG 62.778 72.222 13.83 0.88 44.19 3.51
2490 2800 4.148825 GCAGATCCTGGCCGTCGT 62.149 66.667 0.00 0.00 31.21 4.34
2555 2865 3.332385 GCCCCCGTTCCCACCTTA 61.332 66.667 0.00 0.00 0.00 2.69
2593 2903 1.544246 ACAGCCAGTTTTTATTCGGCC 59.456 47.619 0.00 0.00 44.06 6.13
2642 2952 2.028420 TCGAAGGCATCACCATCAAG 57.972 50.000 0.00 0.00 43.14 3.02
2665 2975 7.681939 TTACATCAGGGAAGTACATCAAAAC 57.318 36.000 0.00 0.00 0.00 2.43
2684 2994 3.135414 GCATTCACGTGCACATTACAT 57.865 42.857 18.64 0.00 44.43 2.29
2694 3004 2.413112 CCAGAACACTAGCATTCACGTG 59.587 50.000 9.94 9.94 0.00 4.49
2712 3022 5.932303 ACTACTACAGCAATAACAACACCAG 59.068 40.000 0.00 0.00 0.00 4.00
2713 3023 5.860611 ACTACTACAGCAATAACAACACCA 58.139 37.500 0.00 0.00 0.00 4.17
2714 3024 6.796705 AACTACTACAGCAATAACAACACC 57.203 37.500 0.00 0.00 0.00 4.16
2715 3025 8.339714 TCAAAACTACTACAGCAATAACAACAC 58.660 33.333 0.00 0.00 0.00 3.32
2734 3044 8.721133 ACTCCCAATATAAAACCTTCAAAACT 57.279 30.769 0.00 0.00 0.00 2.66
2735 3045 9.772973 AAACTCCCAATATAAAACCTTCAAAAC 57.227 29.630 0.00 0.00 0.00 2.43
2825 3171 2.866460 GCGAACTTCTGCAGTGGAGTTA 60.866 50.000 23.00 0.64 35.12 2.24
2844 3190 0.875474 CAAAGCCCTTTGTGGTTGCG 60.875 55.000 11.60 0.00 43.52 4.85
2855 3201 2.818921 TCATATGCAAACCAAAGCCCT 58.181 42.857 0.00 0.00 0.00 5.19
2909 3271 9.911138 GGTCCAAAAATAAAATAAAGTCGGTTA 57.089 29.630 0.00 0.00 0.00 2.85
2910 3272 7.595875 CGGTCCAAAAATAAAATAAAGTCGGTT 59.404 33.333 0.00 0.00 0.00 4.44
2911 3273 7.085746 CGGTCCAAAAATAAAATAAAGTCGGT 58.914 34.615 0.00 0.00 0.00 4.69
2912 3274 6.528774 CCGGTCCAAAAATAAAATAAAGTCGG 59.471 38.462 0.00 0.00 0.00 4.79
2913 3275 6.528774 CCCGGTCCAAAAATAAAATAAAGTCG 59.471 38.462 0.00 0.00 0.00 4.18
2914 3276 7.604549 TCCCGGTCCAAAAATAAAATAAAGTC 58.395 34.615 0.00 0.00 0.00 3.01
2915 3277 7.541916 TCCCGGTCCAAAAATAAAATAAAGT 57.458 32.000 0.00 0.00 0.00 2.66
2916 3278 8.714179 GTTTCCCGGTCCAAAAATAAAATAAAG 58.286 33.333 0.00 0.00 0.00 1.85
2936 4006 2.368875 TCTGTCTCCTCAAGTGTTTCCC 59.631 50.000 0.00 0.00 0.00 3.97
3118 4188 9.628500 GTCAAATAGGGTTTTCCAGTATCTATT 57.372 33.333 0.00 0.00 42.91 1.73
3128 4198 4.450082 AATGCGTCAAATAGGGTTTTCC 57.550 40.909 0.00 0.00 39.75 3.13
3129 4199 5.389411 GCAAAATGCGTCAAATAGGGTTTTC 60.389 40.000 0.00 0.00 31.71 2.29
3130 4200 4.450757 GCAAAATGCGTCAAATAGGGTTTT 59.549 37.500 0.00 0.00 31.71 2.43
3131 4201 3.993736 GCAAAATGCGTCAAATAGGGTTT 59.006 39.130 0.00 0.00 31.71 3.27
3132 4202 3.584834 GCAAAATGCGTCAAATAGGGTT 58.415 40.909 0.00 0.00 31.71 4.11
3133 4203 3.230743 GCAAAATGCGTCAAATAGGGT 57.769 42.857 0.00 0.00 31.71 4.34
3145 4215 1.971962 CGACTCTTTGACGCAAAATGC 59.028 47.619 6.50 0.00 40.69 3.56
3153 4223 1.189403 GATACGGCGACTCTTTGACG 58.811 55.000 16.62 0.00 36.94 4.35
3154 4224 1.189403 CGATACGGCGACTCTTTGAC 58.811 55.000 16.62 0.00 0.00 3.18
3155 4225 0.524816 GCGATACGGCGACTCTTTGA 60.525 55.000 16.62 0.00 0.00 2.69
3156 4226 0.800683 TGCGATACGGCGACTCTTTG 60.801 55.000 16.62 0.00 35.06 2.77
3157 4227 0.102481 ATGCGATACGGCGACTCTTT 59.898 50.000 16.62 0.00 35.06 2.52
3158 4228 0.949397 TATGCGATACGGCGACTCTT 59.051 50.000 16.62 0.00 35.06 2.85
3159 4229 0.517755 CTATGCGATACGGCGACTCT 59.482 55.000 16.62 0.00 35.06 3.24
3160 4230 0.454620 CCTATGCGATACGGCGACTC 60.455 60.000 16.62 8.73 35.06 3.36
3161 4231 1.579932 CCTATGCGATACGGCGACT 59.420 57.895 16.62 0.00 35.06 4.18
3162 4232 2.087009 GCCTATGCGATACGGCGAC 61.087 63.158 16.62 3.48 35.06 5.19
3163 4233 2.257371 GCCTATGCGATACGGCGA 59.743 61.111 16.62 0.00 35.06 5.54
3173 4243 1.170919 TCTAGGTCGTCCGCCTATGC 61.171 60.000 9.29 0.00 37.89 3.14
3174 4244 0.875728 CTCTAGGTCGTCCGCCTATG 59.124 60.000 9.29 5.80 37.89 2.23
3175 4245 0.890090 GCTCTAGGTCGTCCGCCTAT 60.890 60.000 9.29 0.00 37.89 2.57
3176 4246 1.525535 GCTCTAGGTCGTCCGCCTA 60.526 63.158 8.75 8.75 37.54 3.93
3177 4247 2.829458 GCTCTAGGTCGTCCGCCT 60.829 66.667 7.59 7.59 40.00 5.52
3178 4248 4.253257 CGCTCTAGGTCGTCCGCC 62.253 72.222 0.00 0.00 39.05 6.13
3179 4249 4.908877 GCGCTCTAGGTCGTCCGC 62.909 72.222 0.00 0.00 39.05 5.54
3180 4250 4.592936 CGCGCTCTAGGTCGTCCG 62.593 72.222 5.56 0.30 39.05 4.79
3181 4251 3.200593 TCGCGCTCTAGGTCGTCC 61.201 66.667 5.56 0.00 0.00 4.79
3182 4252 1.979831 AAGTCGCGCTCTAGGTCGTC 61.980 60.000 5.56 0.00 0.00 4.20
3183 4253 2.039405 AAGTCGCGCTCTAGGTCGT 61.039 57.895 5.56 0.00 0.00 4.34
3184 4254 1.583967 CAAGTCGCGCTCTAGGTCG 60.584 63.158 5.56 0.00 0.00 4.79
3185 4255 1.226717 CCAAGTCGCGCTCTAGGTC 60.227 63.158 5.56 0.00 0.00 3.85
3186 4256 2.711922 CCCAAGTCGCGCTCTAGGT 61.712 63.158 5.56 0.00 0.00 3.08
3187 4257 2.105128 CCCAAGTCGCGCTCTAGG 59.895 66.667 5.56 5.09 0.00 3.02
3188 4258 2.583593 GCCCAAGTCGCGCTCTAG 60.584 66.667 5.56 0.00 0.00 2.43
3189 4259 4.143333 GGCCCAAGTCGCGCTCTA 62.143 66.667 5.56 0.00 0.00 2.43
3203 4273 2.033294 GCTATAGCTGGGCTGGCC 59.967 66.667 17.75 14.23 40.10 5.36
3204 4274 1.816863 TACGCTATAGCTGGGCTGGC 61.817 60.000 21.98 0.00 40.10 4.85
3205 4275 0.898320 ATACGCTATAGCTGGGCTGG 59.102 55.000 21.98 7.50 40.10 4.85
3206 4276 1.273606 ACATACGCTATAGCTGGGCTG 59.726 52.381 21.98 13.64 40.10 4.85
3207 4277 1.633774 ACATACGCTATAGCTGGGCT 58.366 50.000 21.98 3.85 43.41 5.19
3208 4278 2.230508 TGTACATACGCTATAGCTGGGC 59.769 50.000 21.98 11.03 39.32 5.36
3209 4279 3.119459 CCTGTACATACGCTATAGCTGGG 60.119 52.174 21.98 9.62 39.32 4.45
3210 4280 3.506455 ACCTGTACATACGCTATAGCTGG 59.494 47.826 21.98 10.33 39.32 4.85
3211 4281 4.768130 ACCTGTACATACGCTATAGCTG 57.232 45.455 21.98 15.68 39.32 4.24
3212 4282 5.048643 CAGAACCTGTACATACGCTATAGCT 60.049 44.000 21.98 11.70 39.32 3.32
3213 4283 5.154932 CAGAACCTGTACATACGCTATAGC 58.845 45.833 15.09 15.09 37.78 2.97
3214 4284 5.241064 ACCAGAACCTGTACATACGCTATAG 59.759 44.000 0.00 0.00 0.00 1.31
3215 4285 5.135383 ACCAGAACCTGTACATACGCTATA 58.865 41.667 0.00 0.00 0.00 1.31
3216 4286 3.958798 ACCAGAACCTGTACATACGCTAT 59.041 43.478 0.00 0.00 0.00 2.97
3217 4287 3.359033 ACCAGAACCTGTACATACGCTA 58.641 45.455 0.00 0.00 0.00 4.26
3218 4288 2.176889 ACCAGAACCTGTACATACGCT 58.823 47.619 0.00 0.00 0.00 5.07
3219 4289 2.667473 ACCAGAACCTGTACATACGC 57.333 50.000 0.00 0.00 0.00 4.42
3220 4290 4.753107 ACAAAACCAGAACCTGTACATACG 59.247 41.667 0.00 0.00 0.00 3.06
3221 4291 5.761234 TCACAAAACCAGAACCTGTACATAC 59.239 40.000 0.00 0.00 0.00 2.39
3222 4292 5.931294 TCACAAAACCAGAACCTGTACATA 58.069 37.500 0.00 0.00 0.00 2.29
3223 4293 4.787551 TCACAAAACCAGAACCTGTACAT 58.212 39.130 0.00 0.00 0.00 2.29
3224 4294 4.223556 TCACAAAACCAGAACCTGTACA 57.776 40.909 0.00 0.00 0.00 2.90
3225 4295 4.916870 GTTCACAAAACCAGAACCTGTAC 58.083 43.478 0.00 0.00 36.52 2.90
3231 4301 4.983671 AGAAGGTTCACAAAACCAGAAC 57.016 40.909 9.45 0.00 42.69 3.01
3232 4302 5.996644 TCTAGAAGGTTCACAAAACCAGAA 58.003 37.500 9.45 0.00 42.69 3.02
3233 4303 5.454755 CCTCTAGAAGGTTCACAAAACCAGA 60.455 44.000 9.45 2.92 42.69 3.86
3234 4304 4.757149 CCTCTAGAAGGTTCACAAAACCAG 59.243 45.833 9.45 0.00 42.69 4.00
3235 4305 4.410883 TCCTCTAGAAGGTTCACAAAACCA 59.589 41.667 9.45 0.00 46.32 3.67
3236 4306 4.969484 TCCTCTAGAAGGTTCACAAAACC 58.031 43.478 0.00 0.00 46.32 3.27
3237 4307 6.149640 GGAATCCTCTAGAAGGTTCACAAAAC 59.850 42.308 14.82 0.00 46.32 2.43
3238 4308 6.238648 GGAATCCTCTAGAAGGTTCACAAAA 58.761 40.000 14.82 0.00 46.32 2.44
3239 4309 5.280521 GGGAATCCTCTAGAAGGTTCACAAA 60.281 44.000 14.82 0.00 46.32 2.83
3240 4310 4.225267 GGGAATCCTCTAGAAGGTTCACAA 59.775 45.833 14.82 0.00 46.32 3.33
3241 4311 3.775316 GGGAATCCTCTAGAAGGTTCACA 59.225 47.826 14.82 0.00 46.32 3.58
3242 4312 3.775316 TGGGAATCCTCTAGAAGGTTCAC 59.225 47.826 14.82 12.22 46.32 3.18
3243 4313 4.033709 CTGGGAATCCTCTAGAAGGTTCA 58.966 47.826 14.82 0.00 46.32 3.18
3244 4314 3.181459 GCTGGGAATCCTCTAGAAGGTTC 60.181 52.174 5.87 5.87 46.32 3.62
3245 4315 2.774809 GCTGGGAATCCTCTAGAAGGTT 59.225 50.000 0.00 0.00 46.32 3.50
3246 4316 2.403561 GCTGGGAATCCTCTAGAAGGT 58.596 52.381 0.00 0.00 46.32 3.50
3248 4318 1.342819 CGGCTGGGAATCCTCTAGAAG 59.657 57.143 0.00 0.00 0.00 2.85
3249 4319 1.414158 CGGCTGGGAATCCTCTAGAA 58.586 55.000 0.00 0.00 0.00 2.10
3250 4320 0.470080 CCGGCTGGGAATCCTCTAGA 60.470 60.000 2.57 0.00 38.47 2.43
3251 4321 0.760945 ACCGGCTGGGAATCCTCTAG 60.761 60.000 18.00 0.00 40.75 2.43
3252 4322 0.326238 AACCGGCTGGGAATCCTCTA 60.326 55.000 18.00 0.00 40.75 2.43
3253 4323 1.208165 AAACCGGCTGGGAATCCTCT 61.208 55.000 18.00 0.00 40.75 3.69
3254 4324 0.323451 AAAACCGGCTGGGAATCCTC 60.323 55.000 18.00 0.00 40.75 3.71
3255 4325 0.114364 AAAAACCGGCTGGGAATCCT 59.886 50.000 18.00 0.00 40.75 3.24
3256 4326 1.475280 GTAAAAACCGGCTGGGAATCC 59.525 52.381 18.00 0.00 40.75 3.01
3257 4327 2.163613 CAGTAAAAACCGGCTGGGAATC 59.836 50.000 18.00 1.13 40.75 2.52
3258 4328 2.167662 CAGTAAAAACCGGCTGGGAAT 58.832 47.619 18.00 0.00 40.75 3.01
3259 4329 1.611519 CAGTAAAAACCGGCTGGGAA 58.388 50.000 18.00 0.00 40.75 3.97
3260 4330 0.250989 CCAGTAAAAACCGGCTGGGA 60.251 55.000 18.00 0.00 40.75 4.37
3261 4331 1.873270 GCCAGTAAAAACCGGCTGGG 61.873 60.000 20.83 4.46 41.50 4.45
3262 4332 1.584495 GCCAGTAAAAACCGGCTGG 59.416 57.895 16.70 16.70 41.50 4.85
3265 4335 1.604438 CCAAAGCCAGTAAAAACCGGC 60.604 52.381 0.00 0.00 45.23 6.13
3266 4336 1.000394 CCCAAAGCCAGTAAAAACCGG 60.000 52.381 0.00 0.00 0.00 5.28
3267 4337 1.957877 TCCCAAAGCCAGTAAAAACCG 59.042 47.619 0.00 0.00 0.00 4.44
3268 4338 3.493699 GGTTCCCAAAGCCAGTAAAAACC 60.494 47.826 0.00 0.00 0.00 3.27
3269 4339 3.386726 AGGTTCCCAAAGCCAGTAAAAAC 59.613 43.478 0.00 0.00 33.23 2.43
3270 4340 3.648739 AGGTTCCCAAAGCCAGTAAAAA 58.351 40.909 0.00 0.00 33.23 1.94
3271 4341 3.322191 AGGTTCCCAAAGCCAGTAAAA 57.678 42.857 0.00 0.00 33.23 1.52
3272 4342 3.117284 AGAAGGTTCCCAAAGCCAGTAAA 60.117 43.478 0.00 0.00 33.23 2.01
3273 4343 2.445525 AGAAGGTTCCCAAAGCCAGTAA 59.554 45.455 0.00 0.00 33.23 2.24
3274 4344 2.062636 AGAAGGTTCCCAAAGCCAGTA 58.937 47.619 0.00 0.00 33.23 2.74
3275 4345 0.853530 AGAAGGTTCCCAAAGCCAGT 59.146 50.000 0.00 0.00 33.23 4.00
3276 4346 2.305927 TCTAGAAGGTTCCCAAAGCCAG 59.694 50.000 0.00 0.00 33.23 4.85
3277 4347 2.344592 TCTAGAAGGTTCCCAAAGCCA 58.655 47.619 0.00 0.00 33.23 4.75
3278 4348 3.244946 ACTTCTAGAAGGTTCCCAAAGCC 60.245 47.826 30.98 0.00 42.53 4.35
3279 4349 4.004314 GACTTCTAGAAGGTTCCCAAAGC 58.996 47.826 30.98 7.96 42.53 3.51
3280 4350 4.565861 GGGACTTCTAGAAGGTTCCCAAAG 60.566 50.000 35.27 14.81 45.77 2.77
3281 4351 3.329814 GGGACTTCTAGAAGGTTCCCAAA 59.670 47.826 35.27 5.11 45.77 3.28
3282 4352 2.910977 GGGACTTCTAGAAGGTTCCCAA 59.089 50.000 35.27 5.74 45.77 4.12
3283 4353 2.547990 GGGACTTCTAGAAGGTTCCCA 58.452 52.381 35.27 6.36 45.77 4.37
3284 4354 2.502130 CAGGGACTTCTAGAAGGTTCCC 59.498 54.545 34.29 34.29 46.35 3.97
3285 4355 3.442076 TCAGGGACTTCTAGAAGGTTCC 58.558 50.000 30.98 27.43 42.53 3.62
3286 4356 4.322877 GGTTCAGGGACTTCTAGAAGGTTC 60.323 50.000 30.98 21.51 42.53 3.62
3287 4357 3.583526 GGTTCAGGGACTTCTAGAAGGTT 59.416 47.826 30.98 15.21 42.53 3.50
3288 4358 3.174779 GGTTCAGGGACTTCTAGAAGGT 58.825 50.000 30.98 18.97 42.53 3.50
3289 4359 2.166664 CGGTTCAGGGACTTCTAGAAGG 59.833 54.545 30.98 16.12 42.53 3.46
3290 4360 2.166664 CCGGTTCAGGGACTTCTAGAAG 59.833 54.545 27.41 27.41 43.79 2.85
3291 4361 2.176889 CCGGTTCAGGGACTTCTAGAA 58.823 52.381 4.81 4.81 34.60 2.10
3292 4362 1.076677 ACCGGTTCAGGGACTTCTAGA 59.923 52.381 0.00 0.00 34.60 2.43
3293 4363 1.477295 GACCGGTTCAGGGACTTCTAG 59.523 57.143 9.42 0.00 34.60 2.43
3294 4364 1.076677 AGACCGGTTCAGGGACTTCTA 59.923 52.381 9.42 0.00 34.60 2.10
3295 4365 0.178929 AGACCGGTTCAGGGACTTCT 60.179 55.000 9.42 0.00 34.60 2.85
3296 4366 0.685660 AAGACCGGTTCAGGGACTTC 59.314 55.000 9.42 0.00 34.60 3.01
3297 4367 1.137697 AAAGACCGGTTCAGGGACTT 58.862 50.000 9.42 1.94 34.60 3.01
3298 4368 2.019807 TAAAGACCGGTTCAGGGACT 57.980 50.000 9.42 0.00 43.88 3.85
3299 4369 3.345508 AATAAAGACCGGTTCAGGGAC 57.654 47.619 9.42 0.00 35.02 4.46
3300 4370 4.376225 AAAATAAAGACCGGTTCAGGGA 57.624 40.909 9.42 0.00 35.02 4.20
3301 4371 4.082408 GGAAAAATAAAGACCGGTTCAGGG 60.082 45.833 9.42 0.00 35.02 4.45
3302 4372 4.765339 AGGAAAAATAAAGACCGGTTCAGG 59.235 41.667 9.42 0.00 37.30 3.86
3303 4373 5.959618 AGGAAAAATAAAGACCGGTTCAG 57.040 39.130 9.42 0.00 0.00 3.02
3304 4374 6.718522 AAAGGAAAAATAAAGACCGGTTCA 57.281 33.333 9.42 0.00 0.00 3.18
3338 4408 8.155821 ACAAAGAAAAACGGAAAAAGGAAAAA 57.844 26.923 0.00 0.00 0.00 1.94
3339 4409 7.731882 ACAAAGAAAAACGGAAAAAGGAAAA 57.268 28.000 0.00 0.00 0.00 2.29
3340 4410 7.658167 AGAACAAAGAAAAACGGAAAAAGGAAA 59.342 29.630 0.00 0.00 0.00 3.13
3341 4411 7.156000 AGAACAAAGAAAAACGGAAAAAGGAA 58.844 30.769 0.00 0.00 0.00 3.36
3342 4412 6.693466 AGAACAAAGAAAAACGGAAAAAGGA 58.307 32.000 0.00 0.00 0.00 3.36
3343 4413 6.811665 AGAGAACAAAGAAAAACGGAAAAAGG 59.188 34.615 0.00 0.00 0.00 3.11
3344 4414 7.009265 GGAGAGAACAAAGAAAAACGGAAAAAG 59.991 37.037 0.00 0.00 0.00 2.27
3345 4415 6.809689 GGAGAGAACAAAGAAAAACGGAAAAA 59.190 34.615 0.00 0.00 0.00 1.94
3346 4416 6.152154 AGGAGAGAACAAAGAAAAACGGAAAA 59.848 34.615 0.00 0.00 0.00 2.29
3347 4417 5.650703 AGGAGAGAACAAAGAAAAACGGAAA 59.349 36.000 0.00 0.00 0.00 3.13
3348 4418 5.190677 AGGAGAGAACAAAGAAAAACGGAA 58.809 37.500 0.00 0.00 0.00 4.30
3349 4419 4.777463 AGGAGAGAACAAAGAAAAACGGA 58.223 39.130 0.00 0.00 0.00 4.69
3350 4420 5.500645 AAGGAGAGAACAAAGAAAAACGG 57.499 39.130 0.00 0.00 0.00 4.44
3351 4421 7.812309 AAAAAGGAGAGAACAAAGAAAAACG 57.188 32.000 0.00 0.00 0.00 3.60
3554 4624 7.610865 TGAAATCTTGACCAAACTTTGAAAGT 58.389 30.769 4.45 4.45 45.46 2.66
3555 4625 8.477984 TTGAAATCTTGACCAAACTTTGAAAG 57.522 30.769 2.89 2.89 0.00 2.62
3556 4626 8.839310 TTTGAAATCTTGACCAAACTTTGAAA 57.161 26.923 2.87 0.00 0.00 2.69
3557 4627 8.839310 TTTTGAAATCTTGACCAAACTTTGAA 57.161 26.923 2.87 0.00 0.00 2.69
3558 4628 8.839310 TTTTTGAAATCTTGACCAAACTTTGA 57.161 26.923 2.87 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.