Multiple sequence alignment - TraesCS5A01G383700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G383700 chr5A 100.000 5784 0 0 1 5784 581306855 581301072 0.000000e+00 10682.0
1 TraesCS5A01G383700 chr5D 93.984 2593 86 27 2463 5011 461217030 461214464 0.000000e+00 3860.0
2 TraesCS5A01G383700 chr5D 92.487 2103 104 23 388 2465 461219148 461217075 0.000000e+00 2959.0
3 TraesCS5A01G383700 chr5D 91.749 606 27 8 5180 5784 461213891 461213308 0.000000e+00 821.0
4 TraesCS5A01G383700 chr5D 91.848 368 27 2 5 369 346295235 346294868 1.440000e-140 510.0
5 TraesCS5A01G383700 chr5D 96.491 57 2 0 5127 5183 461214202 461214146 1.720000e-15 95.3
6 TraesCS5A01G383700 chr5B 94.362 2412 95 15 2632 5011 567157415 567155013 0.000000e+00 3663.0
7 TraesCS5A01G383700 chr5B 91.471 2134 103 39 365 2477 567160079 567158004 0.000000e+00 2859.0
8 TraesCS5A01G383700 chr5B 93.333 795 34 11 5005 5784 567154991 567154201 0.000000e+00 1157.0
9 TraesCS5A01G383700 chr5B 92.391 368 26 2 1 367 265105242 265104876 1.850000e-144 523.0
10 TraesCS5A01G383700 chr5B 94.245 139 7 1 2463 2600 567157970 567157832 1.630000e-50 211.0
11 TraesCS5A01G383700 chr5B 95.745 47 2 0 2593 2639 567157646 567157600 6.210000e-10 76.8
12 TraesCS5A01G383700 chr1A 93.733 367 23 0 1 367 325138402 325138768 8.470000e-153 551.0
13 TraesCS5A01G383700 chr1A 92.371 367 28 0 1 367 325300460 325300826 1.850000e-144 523.0
14 TraesCS5A01G383700 chr3A 92.371 367 28 0 1 367 550843128 550843494 1.850000e-144 523.0
15 TraesCS5A01G383700 chr4D 93.201 353 24 0 1 353 443500550 443500902 2.390000e-143 520.0
16 TraesCS5A01G383700 chr1D 92.265 362 28 0 4 365 473246814 473246453 1.110000e-141 514.0
17 TraesCS5A01G383700 chr1D 91.826 367 29 1 1 367 362955530 362955165 1.440000e-140 510.0
18 TraesCS5A01G383700 chr7D 91.622 370 27 2 1 367 390222759 390222391 5.170000e-140 508.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G383700 chr5A 581301072 581306855 5783 True 10682.000 10682 100.00000 1 5784 1 chr5A.!!$R1 5783
1 TraesCS5A01G383700 chr5D 461213308 461219148 5840 True 1933.825 3860 93.67775 388 5784 4 chr5D.!!$R2 5396
2 TraesCS5A01G383700 chr5B 567154201 567160079 5878 True 1593.360 3663 93.83120 365 5784 5 chr5B.!!$R2 5419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.177141 GCTTATAGTGGGTGGCGTGA 59.823 55.000 0.00 0.00 0.00 4.35 F
425 431 0.179062 GATCCTTGCTCACTCGCCAT 60.179 55.000 0.00 0.00 0.00 4.40 F
797 815 0.596082 GCCTTTAAACGGCAGCTCAA 59.404 50.000 18.25 0.00 46.77 3.02 F
1657 1678 0.537188 TCTGGCTCAAAGTCCGGATC 59.463 55.000 7.81 0.93 33.06 3.36 F
1685 1706 2.562298 GGAGATTTGGTGGATTGTTGCA 59.438 45.455 0.00 0.00 0.00 4.08 F
3620 4110 1.610102 GCACTGGAATCTGTCACTGCT 60.610 52.381 0.00 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 1387 0.107456 ATCCAGATAACAGGCGCAGG 59.893 55.000 10.83 2.1 0.00 4.85 R
1634 1655 0.392193 CGGACTTTGAGCCAGAGCAT 60.392 55.000 0.00 0.0 43.56 3.79 R
1711 1732 1.069823 CAGCCTGAATGATCGGTAGCT 59.930 52.381 0.00 0.0 31.86 3.32 R
3620 4110 4.315803 GTGCTTTTAGGTACTTCTGCTCA 58.684 43.478 0.00 0.0 41.75 4.26 R
3715 4208 3.748645 TGGTTAACAGGGCCATACAAT 57.251 42.857 6.18 0.0 0.00 2.71 R
5466 6399 0.107017 CATCCAAAGCCAGGGACGAT 60.107 55.000 0.00 0.0 35.67 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.440060 TCGCTTATAGTGGGTGGCG 59.560 57.895 0.00 0.00 43.22 5.69
19 20 1.143183 CGCTTATAGTGGGTGGCGT 59.857 57.895 0.00 0.00 38.20 5.68
20 21 1.151777 CGCTTATAGTGGGTGGCGTG 61.152 60.000 0.00 0.00 38.20 5.34
21 22 0.177141 GCTTATAGTGGGTGGCGTGA 59.823 55.000 0.00 0.00 0.00 4.35
22 23 1.806623 GCTTATAGTGGGTGGCGTGAG 60.807 57.143 0.00 0.00 0.00 3.51
23 24 1.480954 CTTATAGTGGGTGGCGTGAGT 59.519 52.381 0.00 0.00 0.00 3.41
24 25 0.821517 TATAGTGGGTGGCGTGAGTG 59.178 55.000 0.00 0.00 0.00 3.51
25 26 0.902984 ATAGTGGGTGGCGTGAGTGA 60.903 55.000 0.00 0.00 0.00 3.41
26 27 1.812686 TAGTGGGTGGCGTGAGTGAC 61.813 60.000 0.00 0.00 0.00 3.67
27 28 3.157949 TGGGTGGCGTGAGTGACA 61.158 61.111 0.00 0.00 0.00 3.58
28 29 2.357517 GGGTGGCGTGAGTGACAG 60.358 66.667 0.00 0.00 0.00 3.51
29 30 2.734591 GGTGGCGTGAGTGACAGA 59.265 61.111 0.00 0.00 0.00 3.41
30 31 1.069090 GGTGGCGTGAGTGACAGAA 59.931 57.895 0.00 0.00 0.00 3.02
31 32 0.320771 GGTGGCGTGAGTGACAGAAT 60.321 55.000 0.00 0.00 0.00 2.40
32 33 1.067142 GGTGGCGTGAGTGACAGAATA 60.067 52.381 0.00 0.00 0.00 1.75
33 34 1.993370 GTGGCGTGAGTGACAGAATAC 59.007 52.381 0.00 0.00 0.00 1.89
34 35 1.616374 TGGCGTGAGTGACAGAATACA 59.384 47.619 0.00 0.00 0.00 2.29
35 36 1.993370 GGCGTGAGTGACAGAATACAC 59.007 52.381 0.00 0.00 37.30 2.90
36 37 2.609491 GGCGTGAGTGACAGAATACACA 60.609 50.000 0.00 0.00 39.18 3.72
37 38 2.663602 GCGTGAGTGACAGAATACACAG 59.336 50.000 0.00 0.00 39.18 3.66
38 39 3.611766 GCGTGAGTGACAGAATACACAGA 60.612 47.826 0.00 0.00 39.18 3.41
39 40 3.914966 CGTGAGTGACAGAATACACAGAC 59.085 47.826 0.00 0.00 39.18 3.51
40 41 4.238514 GTGAGTGACAGAATACACAGACC 58.761 47.826 0.00 0.00 39.18 3.85
41 42 4.021894 GTGAGTGACAGAATACACAGACCT 60.022 45.833 0.00 0.00 39.18 3.85
42 43 4.021981 TGAGTGACAGAATACACAGACCTG 60.022 45.833 0.00 0.00 39.18 4.00
43 44 4.152647 AGTGACAGAATACACAGACCTGA 58.847 43.478 3.76 0.00 39.18 3.86
44 45 4.219507 AGTGACAGAATACACAGACCTGAG 59.780 45.833 3.76 0.00 39.18 3.35
45 46 4.021894 GTGACAGAATACACAGACCTGAGT 60.022 45.833 3.76 4.74 38.01 3.41
46 47 5.183331 GTGACAGAATACACAGACCTGAGTA 59.817 44.000 9.16 9.16 40.04 2.59
47 48 5.773176 TGACAGAATACACAGACCTGAGTAA 59.227 40.000 10.45 0.00 39.40 2.24
48 49 6.071896 TGACAGAATACACAGACCTGAGTAAG 60.072 42.308 10.45 5.37 39.40 2.34
49 50 5.775701 ACAGAATACACAGACCTGAGTAAGT 59.224 40.000 10.45 3.61 39.40 2.24
50 51 6.096036 CAGAATACACAGACCTGAGTAAGTG 58.904 44.000 10.45 0.00 39.40 3.16
51 52 5.186021 AGAATACACAGACCTGAGTAAGTGG 59.814 44.000 10.45 0.00 39.40 4.00
52 53 1.971357 ACACAGACCTGAGTAAGTGGG 59.029 52.381 3.76 0.00 35.97 4.61
53 54 0.977395 ACAGACCTGAGTAAGTGGGC 59.023 55.000 3.76 0.00 0.00 5.36
54 55 1.270907 CAGACCTGAGTAAGTGGGCT 58.729 55.000 0.00 0.00 40.42 5.19
55 56 2.225293 ACAGACCTGAGTAAGTGGGCTA 60.225 50.000 3.76 0.00 37.04 3.93
56 57 3.034635 CAGACCTGAGTAAGTGGGCTAT 58.965 50.000 0.00 0.00 37.04 2.97
57 58 3.452627 CAGACCTGAGTAAGTGGGCTATT 59.547 47.826 0.00 0.00 37.04 1.73
58 59 3.452627 AGACCTGAGTAAGTGGGCTATTG 59.547 47.826 0.00 0.00 37.47 1.90
59 60 2.092914 ACCTGAGTAAGTGGGCTATTGC 60.093 50.000 0.00 0.00 38.76 3.56
60 61 2.205074 CTGAGTAAGTGGGCTATTGCG 58.795 52.381 0.00 0.00 40.82 4.85
61 62 1.828595 TGAGTAAGTGGGCTATTGCGA 59.171 47.619 0.00 0.00 40.82 5.10
62 63 2.235155 TGAGTAAGTGGGCTATTGCGAA 59.765 45.455 0.00 0.00 40.82 4.70
63 64 3.118408 TGAGTAAGTGGGCTATTGCGAAT 60.118 43.478 0.00 0.00 40.82 3.34
64 65 3.206150 AGTAAGTGGGCTATTGCGAATG 58.794 45.455 0.00 0.00 40.82 2.67
65 66 1.392589 AAGTGGGCTATTGCGAATGG 58.607 50.000 0.00 0.00 40.82 3.16
66 67 0.466189 AGTGGGCTATTGCGAATGGG 60.466 55.000 0.00 0.00 40.82 4.00
67 68 0.465460 GTGGGCTATTGCGAATGGGA 60.465 55.000 0.00 0.00 40.82 4.37
68 69 0.257328 TGGGCTATTGCGAATGGGAA 59.743 50.000 0.00 0.00 40.82 3.97
69 70 1.133513 TGGGCTATTGCGAATGGGAAT 60.134 47.619 0.00 0.00 40.15 3.01
70 71 2.107378 TGGGCTATTGCGAATGGGAATA 59.893 45.455 0.00 0.00 37.83 1.75
71 72 3.153919 GGGCTATTGCGAATGGGAATAA 58.846 45.455 0.00 0.00 38.30 1.40
72 73 3.572255 GGGCTATTGCGAATGGGAATAAA 59.428 43.478 0.00 0.00 38.30 1.40
73 74 4.321230 GGGCTATTGCGAATGGGAATAAAG 60.321 45.833 0.00 0.00 38.30 1.85
74 75 4.518970 GGCTATTGCGAATGGGAATAAAGA 59.481 41.667 0.00 0.00 38.30 2.52
75 76 5.335191 GGCTATTGCGAATGGGAATAAAGAG 60.335 44.000 0.00 0.00 38.30 2.85
76 77 5.335191 GCTATTGCGAATGGGAATAAAGAGG 60.335 44.000 0.00 0.00 38.30 3.69
77 78 3.924114 TGCGAATGGGAATAAAGAGGA 57.076 42.857 0.00 0.00 0.00 3.71
78 79 3.541632 TGCGAATGGGAATAAAGAGGAC 58.458 45.455 0.00 0.00 0.00 3.85
79 80 3.199946 TGCGAATGGGAATAAAGAGGACT 59.800 43.478 0.00 0.00 0.00 3.85
80 81 4.200092 GCGAATGGGAATAAAGAGGACTT 58.800 43.478 0.00 0.00 38.05 3.01
81 82 4.035675 GCGAATGGGAATAAAGAGGACTTG 59.964 45.833 0.00 0.00 36.39 3.16
82 83 5.428253 CGAATGGGAATAAAGAGGACTTGA 58.572 41.667 0.00 0.00 36.39 3.02
83 84 6.058183 CGAATGGGAATAAAGAGGACTTGAT 58.942 40.000 0.00 0.00 36.39 2.57
84 85 7.217200 CGAATGGGAATAAAGAGGACTTGATA 58.783 38.462 0.00 0.00 36.39 2.15
85 86 7.171678 CGAATGGGAATAAAGAGGACTTGATAC 59.828 40.741 0.00 0.00 36.39 2.24
86 87 7.698163 ATGGGAATAAAGAGGACTTGATACT 57.302 36.000 0.00 0.00 36.39 2.12
87 88 7.510675 TGGGAATAAAGAGGACTTGATACTT 57.489 36.000 0.00 0.00 36.39 2.24
88 89 8.618240 TGGGAATAAAGAGGACTTGATACTTA 57.382 34.615 0.00 0.00 36.39 2.24
89 90 9.053472 TGGGAATAAAGAGGACTTGATACTTAA 57.947 33.333 0.00 0.00 36.39 1.85
96 97 9.553064 AAAGAGGACTTGATACTTAATGCTATG 57.447 33.333 0.00 0.00 36.39 2.23
97 98 7.675062 AGAGGACTTGATACTTAATGCTATGG 58.325 38.462 0.00 0.00 0.00 2.74
98 99 7.291182 AGAGGACTTGATACTTAATGCTATGGT 59.709 37.037 0.00 0.00 0.00 3.55
99 100 7.806180 AGGACTTGATACTTAATGCTATGGTT 58.194 34.615 0.00 0.00 0.00 3.67
100 101 7.716998 AGGACTTGATACTTAATGCTATGGTTG 59.283 37.037 0.00 0.00 0.00 3.77
101 102 7.715249 GGACTTGATACTTAATGCTATGGTTGA 59.285 37.037 0.00 0.00 0.00 3.18
102 103 8.668510 ACTTGATACTTAATGCTATGGTTGAG 57.331 34.615 0.00 0.00 0.00 3.02
103 104 8.267894 ACTTGATACTTAATGCTATGGTTGAGT 58.732 33.333 0.00 0.00 0.00 3.41
104 105 9.113838 CTTGATACTTAATGCTATGGTTGAGTT 57.886 33.333 0.00 0.00 0.00 3.01
105 106 9.461312 TTGATACTTAATGCTATGGTTGAGTTT 57.539 29.630 0.00 0.00 0.00 2.66
120 121 7.981102 GGTTGAGTTTAACCTTAGTGATCTT 57.019 36.000 0.00 0.00 45.29 2.40
121 122 8.392372 GGTTGAGTTTAACCTTAGTGATCTTT 57.608 34.615 0.00 0.00 45.29 2.52
122 123 8.290325 GGTTGAGTTTAACCTTAGTGATCTTTG 58.710 37.037 0.00 0.00 45.29 2.77
123 124 7.979444 TGAGTTTAACCTTAGTGATCTTTGG 57.021 36.000 0.00 0.00 0.00 3.28
124 125 7.514721 TGAGTTTAACCTTAGTGATCTTTGGT 58.485 34.615 0.00 0.00 32.46 3.67
125 126 8.653191 TGAGTTTAACCTTAGTGATCTTTGGTA 58.347 33.333 0.00 0.00 31.49 3.25
126 127 9.152595 GAGTTTAACCTTAGTGATCTTTGGTAG 57.847 37.037 0.00 0.00 31.49 3.18
127 128 8.657712 AGTTTAACCTTAGTGATCTTTGGTAGT 58.342 33.333 0.00 0.00 31.49 2.73
128 129 9.281371 GTTTAACCTTAGTGATCTTTGGTAGTT 57.719 33.333 0.00 0.00 31.49 2.24
129 130 8.842358 TTAACCTTAGTGATCTTTGGTAGTTG 57.158 34.615 0.00 0.00 31.49 3.16
130 131 5.246307 ACCTTAGTGATCTTTGGTAGTTGC 58.754 41.667 0.00 0.00 0.00 4.17
131 132 4.330074 CCTTAGTGATCTTTGGTAGTTGCG 59.670 45.833 0.00 0.00 0.00 4.85
132 133 2.699954 AGTGATCTTTGGTAGTTGCGG 58.300 47.619 0.00 0.00 0.00 5.69
133 134 2.301870 AGTGATCTTTGGTAGTTGCGGA 59.698 45.455 0.00 0.00 0.00 5.54
134 135 3.055094 AGTGATCTTTGGTAGTTGCGGAT 60.055 43.478 0.00 0.00 0.00 4.18
135 136 3.063997 GTGATCTTTGGTAGTTGCGGATG 59.936 47.826 0.00 0.00 0.00 3.51
136 137 1.448985 TCTTTGGTAGTTGCGGATGC 58.551 50.000 0.00 0.00 43.20 3.91
137 138 1.003118 TCTTTGGTAGTTGCGGATGCT 59.997 47.619 0.00 0.00 43.34 3.79
138 139 1.812571 CTTTGGTAGTTGCGGATGCTT 59.187 47.619 0.00 0.00 43.34 3.91
139 140 1.164411 TTGGTAGTTGCGGATGCTTG 58.836 50.000 0.00 0.00 43.34 4.01
140 141 1.305219 TGGTAGTTGCGGATGCTTGC 61.305 55.000 0.00 0.00 43.34 4.01
141 142 1.026718 GGTAGTTGCGGATGCTTGCT 61.027 55.000 0.00 0.00 43.34 3.91
142 143 1.651987 GTAGTTGCGGATGCTTGCTA 58.348 50.000 0.00 0.00 43.34 3.49
143 144 1.594862 GTAGTTGCGGATGCTTGCTAG 59.405 52.381 0.00 0.00 43.34 3.42
144 145 0.250234 AGTTGCGGATGCTTGCTAGA 59.750 50.000 0.00 0.00 43.34 2.43
145 146 0.654683 GTTGCGGATGCTTGCTAGAG 59.345 55.000 0.00 0.00 43.34 2.43
146 147 0.250234 TTGCGGATGCTTGCTAGAGT 59.750 50.000 0.00 0.00 43.34 3.24
147 148 0.250234 TGCGGATGCTTGCTAGAGTT 59.750 50.000 0.00 0.00 43.34 3.01
148 149 0.933796 GCGGATGCTTGCTAGAGTTC 59.066 55.000 0.00 0.00 38.39 3.01
149 150 1.576356 CGGATGCTTGCTAGAGTTCC 58.424 55.000 0.00 0.76 0.00 3.62
150 151 1.134699 CGGATGCTTGCTAGAGTTCCA 60.135 52.381 0.00 0.00 0.00 3.53
151 152 2.677902 CGGATGCTTGCTAGAGTTCCAA 60.678 50.000 0.00 0.00 0.00 3.53
152 153 3.549794 GGATGCTTGCTAGAGTTCCAAT 58.450 45.455 0.00 0.00 0.00 3.16
153 154 3.950395 GGATGCTTGCTAGAGTTCCAATT 59.050 43.478 0.00 0.00 0.00 2.32
154 155 5.126067 GGATGCTTGCTAGAGTTCCAATTA 58.874 41.667 0.00 0.00 0.00 1.40
155 156 5.767168 GGATGCTTGCTAGAGTTCCAATTAT 59.233 40.000 0.00 0.00 0.00 1.28
156 157 6.936900 GGATGCTTGCTAGAGTTCCAATTATA 59.063 38.462 0.00 0.00 0.00 0.98
157 158 7.445402 GGATGCTTGCTAGAGTTCCAATTATAA 59.555 37.037 0.00 0.00 0.00 0.98
158 159 7.792374 TGCTTGCTAGAGTTCCAATTATAAG 57.208 36.000 0.00 0.00 0.00 1.73
159 160 7.338710 TGCTTGCTAGAGTTCCAATTATAAGT 58.661 34.615 0.00 0.00 0.00 2.24
160 161 7.280876 TGCTTGCTAGAGTTCCAATTATAAGTG 59.719 37.037 5.94 5.94 0.00 3.16
161 162 7.553881 TTGCTAGAGTTCCAATTATAAGTGC 57.446 36.000 7.40 0.00 0.00 4.40
162 163 6.649155 TGCTAGAGTTCCAATTATAAGTGCA 58.351 36.000 7.40 0.00 0.00 4.57
163 164 7.282585 TGCTAGAGTTCCAATTATAAGTGCAT 58.717 34.615 7.40 0.00 0.00 3.96
164 165 8.428852 TGCTAGAGTTCCAATTATAAGTGCATA 58.571 33.333 7.40 0.00 0.00 3.14
165 166 9.442047 GCTAGAGTTCCAATTATAAGTGCATAT 57.558 33.333 7.40 0.00 0.00 1.78
182 183 8.659925 AGTGCATATGATTCAAGTAGAGAAAG 57.340 34.615 6.97 0.00 0.00 2.62
183 184 8.263640 AGTGCATATGATTCAAGTAGAGAAAGT 58.736 33.333 6.97 0.00 0.00 2.66
184 185 9.534565 GTGCATATGATTCAAGTAGAGAAAGTA 57.465 33.333 6.97 0.00 0.00 2.24
191 192 9.587772 TGATTCAAGTAGAGAAAGTATGTTAGC 57.412 33.333 0.00 0.00 0.00 3.09
192 193 9.810545 GATTCAAGTAGAGAAAGTATGTTAGCT 57.189 33.333 0.00 0.00 0.00 3.32
193 194 9.810545 ATTCAAGTAGAGAAAGTATGTTAGCTC 57.189 33.333 0.00 0.00 0.00 4.09
194 195 8.349568 TCAAGTAGAGAAAGTATGTTAGCTCA 57.650 34.615 0.00 0.00 0.00 4.26
195 196 8.972127 TCAAGTAGAGAAAGTATGTTAGCTCAT 58.028 33.333 0.00 0.00 0.00 2.90
196 197 9.029243 CAAGTAGAGAAAGTATGTTAGCTCATG 57.971 37.037 0.00 0.00 0.00 3.07
197 198 8.299990 AGTAGAGAAAGTATGTTAGCTCATGT 57.700 34.615 0.00 0.00 0.00 3.21
198 199 8.410141 AGTAGAGAAAGTATGTTAGCTCATGTC 58.590 37.037 0.00 0.00 0.00 3.06
199 200 7.416964 AGAGAAAGTATGTTAGCTCATGTCT 57.583 36.000 0.00 0.00 0.00 3.41
200 201 7.846066 AGAGAAAGTATGTTAGCTCATGTCTT 58.154 34.615 0.00 0.00 0.00 3.01
201 202 8.317679 AGAGAAAGTATGTTAGCTCATGTCTTT 58.682 33.333 14.26 14.26 36.77 2.52
202 203 8.854614 AGAAAGTATGTTAGCTCATGTCTTTT 57.145 30.769 14.92 3.17 35.65 2.27
203 204 8.940952 AGAAAGTATGTTAGCTCATGTCTTTTC 58.059 33.333 14.92 9.57 35.65 2.29
204 205 7.617041 AAGTATGTTAGCTCATGTCTTTTCC 57.383 36.000 0.00 0.00 0.00 3.13
205 206 6.951971 AGTATGTTAGCTCATGTCTTTTCCT 58.048 36.000 0.00 0.00 0.00 3.36
206 207 7.044798 AGTATGTTAGCTCATGTCTTTTCCTC 58.955 38.462 0.00 0.00 0.00 3.71
207 208 5.227569 TGTTAGCTCATGTCTTTTCCTCA 57.772 39.130 0.00 0.00 0.00 3.86
208 209 5.809001 TGTTAGCTCATGTCTTTTCCTCAT 58.191 37.500 0.00 0.00 0.00 2.90
209 210 6.946340 TGTTAGCTCATGTCTTTTCCTCATA 58.054 36.000 0.00 0.00 0.00 2.15
210 211 7.568349 TGTTAGCTCATGTCTTTTCCTCATAT 58.432 34.615 0.00 0.00 0.00 1.78
211 212 8.704668 TGTTAGCTCATGTCTTTTCCTCATATA 58.295 33.333 0.00 0.00 0.00 0.86
212 213 9.547753 GTTAGCTCATGTCTTTTCCTCATATAA 57.452 33.333 0.00 0.00 0.00 0.98
215 216 9.638176 AGCTCATGTCTTTTCCTCATATAAAAT 57.362 29.630 0.00 0.00 0.00 1.82
219 220 9.806203 CATGTCTTTTCCTCATATAAAATTGCA 57.194 29.630 0.00 0.00 0.00 4.08
221 222 9.806203 TGTCTTTTCCTCATATAAAATTGCATG 57.194 29.630 0.00 0.00 0.00 4.06
233 234 9.859427 ATATAAAATTGCATGAATGATTACCGG 57.141 29.630 0.00 0.00 0.00 5.28
234 235 5.596836 AAATTGCATGAATGATTACCGGT 57.403 34.783 13.98 13.98 0.00 5.28
235 236 4.836125 ATTGCATGAATGATTACCGGTC 57.164 40.909 12.40 0.00 0.00 4.79
236 237 3.558931 TGCATGAATGATTACCGGTCT 57.441 42.857 12.40 0.00 0.00 3.85
237 238 4.681074 TGCATGAATGATTACCGGTCTA 57.319 40.909 12.40 0.00 0.00 2.59
238 239 4.631131 TGCATGAATGATTACCGGTCTAG 58.369 43.478 12.40 0.00 0.00 2.43
239 240 4.100963 TGCATGAATGATTACCGGTCTAGT 59.899 41.667 12.40 0.00 0.00 2.57
240 241 5.057149 GCATGAATGATTACCGGTCTAGTT 58.943 41.667 12.40 0.31 0.00 2.24
241 242 6.183360 TGCATGAATGATTACCGGTCTAGTTA 60.183 38.462 12.40 0.00 0.00 2.24
242 243 6.874134 GCATGAATGATTACCGGTCTAGTTAT 59.126 38.462 12.40 0.00 0.00 1.89
243 244 7.063544 GCATGAATGATTACCGGTCTAGTTATC 59.936 40.741 12.40 6.58 0.00 1.75
244 245 7.591421 TGAATGATTACCGGTCTAGTTATCA 57.409 36.000 12.40 12.10 37.58 2.15
245 246 8.014070 TGAATGATTACCGGTCTAGTTATCAA 57.986 34.615 12.40 0.00 36.98 2.57
246 247 8.647796 TGAATGATTACCGGTCTAGTTATCAAT 58.352 33.333 12.40 0.71 36.98 2.57
247 248 9.490379 GAATGATTACCGGTCTAGTTATCAATT 57.510 33.333 12.40 8.23 36.98 2.32
248 249 8.833231 ATGATTACCGGTCTAGTTATCAATTG 57.167 34.615 12.40 0.00 36.98 2.32
249 250 6.704493 TGATTACCGGTCTAGTTATCAATTGC 59.296 38.462 12.40 0.00 32.13 3.56
250 251 3.805207 ACCGGTCTAGTTATCAATTGCC 58.195 45.455 0.00 0.00 0.00 4.52
251 252 3.454812 ACCGGTCTAGTTATCAATTGCCT 59.545 43.478 0.00 0.00 0.00 4.75
252 253 4.652421 ACCGGTCTAGTTATCAATTGCCTA 59.348 41.667 0.00 0.00 0.00 3.93
253 254 5.129815 ACCGGTCTAGTTATCAATTGCCTAA 59.870 40.000 0.00 0.00 0.00 2.69
254 255 5.696724 CCGGTCTAGTTATCAATTGCCTAAG 59.303 44.000 0.00 0.00 0.00 2.18
255 256 5.696724 CGGTCTAGTTATCAATTGCCTAAGG 59.303 44.000 0.00 0.00 0.00 2.69
256 257 6.462487 CGGTCTAGTTATCAATTGCCTAAGGA 60.462 42.308 0.00 0.00 0.00 3.36
257 258 7.454225 GGTCTAGTTATCAATTGCCTAAGGAT 58.546 38.462 0.00 0.00 0.00 3.24
258 259 8.594550 GGTCTAGTTATCAATTGCCTAAGGATA 58.405 37.037 0.00 0.00 0.00 2.59
259 260 9.998106 GTCTAGTTATCAATTGCCTAAGGATAA 57.002 33.333 0.00 0.00 0.00 1.75
263 264 9.866655 AGTTATCAATTGCCTAAGGATAAATGA 57.133 29.630 0.00 0.00 32.50 2.57
264 265 9.899226 GTTATCAATTGCCTAAGGATAAATGAC 57.101 33.333 0.00 0.00 32.50 3.06
265 266 9.866655 TTATCAATTGCCTAAGGATAAATGACT 57.133 29.630 0.00 0.00 29.98 3.41
266 267 8.773033 ATCAATTGCCTAAGGATAAATGACTT 57.227 30.769 0.00 0.00 0.00 3.01
267 268 8.593945 TCAATTGCCTAAGGATAAATGACTTT 57.406 30.769 0.00 0.00 0.00 2.66
268 269 8.686334 TCAATTGCCTAAGGATAAATGACTTTC 58.314 33.333 0.00 0.00 0.00 2.62
269 270 8.689972 CAATTGCCTAAGGATAAATGACTTTCT 58.310 33.333 0.00 0.00 0.00 2.52
270 271 8.829373 ATTGCCTAAGGATAAATGACTTTCTT 57.171 30.769 0.00 0.00 0.00 2.52
271 272 7.630242 TGCCTAAGGATAAATGACTTTCTTG 57.370 36.000 0.00 0.00 0.00 3.02
272 273 7.175104 TGCCTAAGGATAAATGACTTTCTTGT 58.825 34.615 0.00 0.00 0.00 3.16
273 274 7.669722 TGCCTAAGGATAAATGACTTTCTTGTT 59.330 33.333 0.00 0.00 0.00 2.83
274 275 7.970614 GCCTAAGGATAAATGACTTTCTTGTTG 59.029 37.037 0.00 0.00 0.00 3.33
275 276 9.231297 CCTAAGGATAAATGACTTTCTTGTTGA 57.769 33.333 0.00 0.00 0.00 3.18
277 278 8.463930 AAGGATAAATGACTTTCTTGTTGACA 57.536 30.769 0.00 0.00 0.00 3.58
278 279 8.463930 AGGATAAATGACTTTCTTGTTGACAA 57.536 30.769 0.00 0.00 0.00 3.18
279 280 8.912988 AGGATAAATGACTTTCTTGTTGACAAA 58.087 29.630 0.00 0.00 35.15 2.83
280 281 9.528018 GGATAAATGACTTTCTTGTTGACAAAA 57.472 29.630 0.00 0.00 35.15 2.44
282 283 6.892310 AATGACTTTCTTGTTGACAAAAGC 57.108 33.333 7.76 3.61 35.15 3.51
283 284 5.643379 TGACTTTCTTGTTGACAAAAGCT 57.357 34.783 7.76 0.00 35.15 3.74
284 285 6.751514 TGACTTTCTTGTTGACAAAAGCTA 57.248 33.333 7.76 0.00 35.15 3.32
285 286 7.333528 TGACTTTCTTGTTGACAAAAGCTAT 57.666 32.000 7.76 0.00 35.15 2.97
286 287 7.417612 TGACTTTCTTGTTGACAAAAGCTATC 58.582 34.615 7.76 1.72 35.15 2.08
287 288 7.283127 TGACTTTCTTGTTGACAAAAGCTATCT 59.717 33.333 7.76 0.00 35.15 1.98
288 289 8.677148 ACTTTCTTGTTGACAAAAGCTATCTA 57.323 30.769 7.76 0.00 35.15 1.98
289 290 8.560374 ACTTTCTTGTTGACAAAAGCTATCTAC 58.440 33.333 7.76 0.00 35.15 2.59
290 291 8.677148 TTTCTTGTTGACAAAAGCTATCTACT 57.323 30.769 0.00 0.00 35.15 2.57
291 292 8.677148 TTCTTGTTGACAAAAGCTATCTACTT 57.323 30.769 0.00 0.00 35.15 2.24
292 293 8.677148 TCTTGTTGACAAAAGCTATCTACTTT 57.323 30.769 0.00 0.00 38.98 2.66
293 294 9.120538 TCTTGTTGACAAAAGCTATCTACTTTT 57.879 29.630 0.00 0.00 45.73 2.27
304 305 9.681062 AAAGCTATCTACTTTTATTACCTTGCA 57.319 29.630 0.00 0.00 33.62 4.08
305 306 9.681062 AAGCTATCTACTTTTATTACCTTGCAA 57.319 29.630 0.00 0.00 0.00 4.08
306 307 9.853177 AGCTATCTACTTTTATTACCTTGCAAT 57.147 29.630 0.00 0.00 0.00 3.56
314 315 8.789762 ACTTTTATTACCTTGCAATTTACTCGT 58.210 29.630 0.00 0.00 0.00 4.18
327 328 9.697250 TGCAATTTACTCGTAATTTTATTCTCG 57.303 29.630 0.00 0.00 0.00 4.04
328 329 8.670668 GCAATTTACTCGTAATTTTATTCTCGC 58.329 33.333 0.00 0.00 0.00 5.03
329 330 9.697250 CAATTTACTCGTAATTTTATTCTCGCA 57.303 29.630 0.00 0.00 0.00 5.10
332 333 9.749490 TTTACTCGTAATTTTATTCTCGCAAAG 57.251 29.630 0.00 0.00 0.00 2.77
333 334 7.360575 ACTCGTAATTTTATTCTCGCAAAGT 57.639 32.000 0.00 0.00 0.00 2.66
334 335 8.470040 ACTCGTAATTTTATTCTCGCAAAGTA 57.530 30.769 0.00 0.00 0.00 2.24
335 336 8.378421 ACTCGTAATTTTATTCTCGCAAAGTAC 58.622 33.333 0.00 0.00 31.01 2.73
336 337 8.470040 TCGTAATTTTATTCTCGCAAAGTACT 57.530 30.769 0.00 0.00 31.77 2.73
337 338 8.589629 TCGTAATTTTATTCTCGCAAAGTACTC 58.410 33.333 0.00 0.00 31.77 2.59
338 339 8.377681 CGTAATTTTATTCTCGCAAAGTACTCA 58.622 33.333 0.00 0.00 31.77 3.41
347 348 7.667043 TCTCGCAAAGTACTCATAATTTTGT 57.333 32.000 0.00 0.00 32.75 2.83
348 349 8.094798 TCTCGCAAAGTACTCATAATTTTGTT 57.905 30.769 0.00 0.00 32.75 2.83
349 350 8.227791 TCTCGCAAAGTACTCATAATTTTGTTC 58.772 33.333 0.00 0.00 32.75 3.18
350 351 8.094798 TCGCAAAGTACTCATAATTTTGTTCT 57.905 30.769 0.00 0.00 32.75 3.01
351 352 8.564574 TCGCAAAGTACTCATAATTTTGTTCTT 58.435 29.630 0.00 0.00 32.75 2.52
352 353 8.629986 CGCAAAGTACTCATAATTTTGTTCTTG 58.370 33.333 0.00 0.00 32.75 3.02
353 354 8.427774 GCAAAGTACTCATAATTTTGTTCTTGC 58.572 33.333 0.00 0.00 32.75 4.01
354 355 9.462174 CAAAGTACTCATAATTTTGTTCTTGCA 57.538 29.630 0.00 0.00 0.00 4.08
375 376 5.221601 TGCAAAATAGTTTCATTCAAGGGCA 60.222 36.000 0.00 0.00 0.00 5.36
380 381 3.771216 AGTTTCATTCAAGGGCAGTGAT 58.229 40.909 0.00 0.00 0.00 3.06
390 396 1.134580 AGGGCAGTGATGATGAGTTCG 60.135 52.381 0.00 0.00 0.00 3.95
421 427 2.376808 AACAGATCCTTGCTCACTCG 57.623 50.000 0.00 0.00 0.00 4.18
425 431 0.179062 GATCCTTGCTCACTCGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
439 445 1.105167 CGCCATGATGAAGCCACCAT 61.105 55.000 0.00 0.00 0.00 3.55
447 453 5.051409 TGATGAAGCCACCATCATAATGA 57.949 39.130 8.61 0.00 43.67 2.57
462 468 0.957395 AATGACCTCCAACGCAGCAG 60.957 55.000 0.00 0.00 0.00 4.24
530 536 1.148157 CTTCGATAGGCAGCACCACG 61.148 60.000 0.00 0.00 43.14 4.94
565 571 2.536997 GAACCACCACCGCTAGCCAT 62.537 60.000 9.66 0.00 0.00 4.40
606 612 1.448540 GCATCACACCTCTCACCGG 60.449 63.158 0.00 0.00 0.00 5.28
612 618 1.448540 CACCTCTCACCGGCATGTC 60.449 63.158 0.00 0.00 0.00 3.06
647 653 2.066262 CGACGCCAAGCTTCTTTAAGA 58.934 47.619 0.00 0.00 34.37 2.10
675 684 5.012148 CACCATAGCTAGCCCTACTATGTTT 59.988 44.000 12.13 0.00 40.99 2.83
708 725 1.768077 CACCTCCCCCATCTCCTCC 60.768 68.421 0.00 0.00 0.00 4.30
710 727 1.319799 CCTCCCCCATCTCCTCCTT 59.680 63.158 0.00 0.00 0.00 3.36
770 788 9.804758 CTCCTTTATTCTCTTTACGTAATCACT 57.195 33.333 9.18 0.00 0.00 3.41
771 789 9.798994 TCCTTTATTCTCTTTACGTAATCACTC 57.201 33.333 9.18 0.00 0.00 3.51
796 814 2.253513 GCCTTTAAACGGCAGCTCA 58.746 52.632 18.25 0.00 46.77 4.26
797 815 0.596082 GCCTTTAAACGGCAGCTCAA 59.404 50.000 18.25 0.00 46.77 3.02
798 816 1.401539 GCCTTTAAACGGCAGCTCAAG 60.402 52.381 18.25 0.00 46.77 3.02
799 817 1.401539 CCTTTAAACGGCAGCTCAAGC 60.402 52.381 0.00 0.00 42.49 4.01
950 968 4.410400 CCCCTCCCCGTCTGCAAC 62.410 72.222 0.00 0.00 0.00 4.17
953 971 2.750350 CTCCCCGTCTGCAACCTT 59.250 61.111 0.00 0.00 0.00 3.50
1354 1372 2.136878 CCGATCCCTCCACCTCCTG 61.137 68.421 0.00 0.00 0.00 3.86
1356 1374 1.395826 CGATCCCTCCACCTCCTGTC 61.396 65.000 0.00 0.00 0.00 3.51
1358 1376 3.775654 CCCTCCACCTCCTGTCGC 61.776 72.222 0.00 0.00 0.00 5.19
1367 1385 1.677637 CCTCCTGTCGCCTACCTTCC 61.678 65.000 0.00 0.00 0.00 3.46
1368 1386 0.684805 CTCCTGTCGCCTACCTTCCT 60.685 60.000 0.00 0.00 0.00 3.36
1369 1387 0.683504 TCCTGTCGCCTACCTTCCTC 60.684 60.000 0.00 0.00 0.00 3.71
1378 1396 2.303549 CTACCTTCCTCCTGCGCCTG 62.304 65.000 4.18 0.00 0.00 4.85
1380 1398 2.348998 CTTCCTCCTGCGCCTGTT 59.651 61.111 4.18 0.00 0.00 3.16
1393 1413 2.662700 CGCCTGTTATCTGGATACGAC 58.337 52.381 0.00 0.00 42.51 4.34
1402 1422 0.663688 CTGGATACGACGGTCTGGAG 59.336 60.000 6.57 0.00 42.51 3.86
1428 1448 5.090845 AGCTGGGTTTATGGGTTGTTTTAT 58.909 37.500 0.00 0.00 0.00 1.40
1429 1449 5.546110 AGCTGGGTTTATGGGTTGTTTTATT 59.454 36.000 0.00 0.00 0.00 1.40
1430 1450 6.726764 AGCTGGGTTTATGGGTTGTTTTATTA 59.273 34.615 0.00 0.00 0.00 0.98
1431 1451 7.039270 GCTGGGTTTATGGGTTGTTTTATTAG 58.961 38.462 0.00 0.00 0.00 1.73
1442 1462 6.661805 GGGTTGTTTTATTAGTTGGGATCTGA 59.338 38.462 0.00 0.00 0.00 3.27
1445 1465 6.423182 TGTTTTATTAGTTGGGATCTGAGGG 58.577 40.000 0.00 0.00 0.00 4.30
1453 1473 2.342659 TGGGATCTGAGGGATTGGATC 58.657 52.381 0.00 0.00 34.33 3.36
1456 1476 1.277557 GATCTGAGGGATTGGATCGGG 59.722 57.143 0.00 0.00 34.33 5.14
1498 1518 3.781770 CTCGTGGGATCTGCGGCTC 62.782 68.421 0.00 0.00 0.00 4.70
1549 1570 4.739228 GTGATCTCAAGTGATGTCGATCAG 59.261 45.833 9.86 0.00 42.22 2.90
1552 1573 5.897377 TCTCAAGTGATGTCGATCAGTAA 57.103 39.130 0.00 0.00 40.77 2.24
1553 1574 5.641709 TCTCAAGTGATGTCGATCAGTAAC 58.358 41.667 0.00 0.00 40.77 2.50
1561 1582 3.064207 TGTCGATCAGTAACACCTTTGC 58.936 45.455 0.00 0.00 0.00 3.68
1581 1602 5.132897 TGCGATTTAGGTTGCTTTTGATT 57.867 34.783 0.00 0.00 0.00 2.57
1582 1603 4.922692 TGCGATTTAGGTTGCTTTTGATTG 59.077 37.500 0.00 0.00 0.00 2.67
1584 1605 5.060940 GCGATTTAGGTTGCTTTTGATTGTC 59.939 40.000 0.00 0.00 0.00 3.18
1590 1611 4.829492 AGGTTGCTTTTGATTGTCTAGCTT 59.171 37.500 0.00 0.00 33.15 3.74
1614 1635 5.766150 AATTCGTTCCTGTTGTTGATTGA 57.234 34.783 0.00 0.00 0.00 2.57
1620 1641 5.147162 GTTCCTGTTGTTGATTGATCGTTC 58.853 41.667 0.00 0.00 0.00 3.95
1652 1673 2.680339 GTTATGCTCTGGCTCAAAGTCC 59.320 50.000 0.00 0.00 39.59 3.85
1657 1678 0.537188 TCTGGCTCAAAGTCCGGATC 59.463 55.000 7.81 0.93 33.06 3.36
1685 1706 2.562298 GGAGATTTGGTGGATTGTTGCA 59.438 45.455 0.00 0.00 0.00 4.08
1698 1719 5.068329 TGGATTGTTGCACTTTTGTCATACA 59.932 36.000 0.00 0.00 0.00 2.29
1705 1726 4.039004 TGCACTTTTGTCATACATTTGCCT 59.961 37.500 0.00 0.00 0.00 4.75
1709 1730 6.308766 CACTTTTGTCATACATTTGCCTTAGC 59.691 38.462 0.00 0.00 40.48 3.09
1906 1934 5.069501 AGTCAATGAACCTACCGTACTTC 57.930 43.478 0.00 0.00 0.00 3.01
1994 2022 9.587772 TTCATTTAGAAGTAGCATCTGAACTAC 57.412 33.333 11.31 11.31 39.25 2.73
2150 2178 8.680903 ACTGACATCTGGATTTAATTGACAATC 58.319 33.333 0.05 0.00 0.00 2.67
2275 2314 9.332502 TGCTACAGTGATTCAGTTTTACTAAAA 57.667 29.630 0.00 0.00 0.00 1.52
2402 2442 4.283467 ACCTCTTCCCAAAGTTTAAATGGC 59.717 41.667 1.38 0.00 33.95 4.40
2539 2630 5.825151 CAGTTCTCTTTGGAAGAAGAAACCT 59.175 40.000 0.00 0.00 37.02 3.50
2572 2663 4.055360 TGTTTGGAACTCAGACGTGTATG 58.945 43.478 0.00 0.00 33.62 2.39
2577 2668 5.120399 TGGAACTCAGACGTGTATGTTTTT 58.880 37.500 0.00 0.00 0.00 1.94
2595 2686 6.361433 TGTTTTTCATCCTACTTGGTTGAGA 58.639 36.000 0.00 0.00 43.22 3.27
2725 3201 5.055144 ACTAGCATCAGCATATGAACACAG 58.945 41.667 6.97 0.00 42.53 3.66
2781 3257 9.624697 TTATAGTTCATGTGTTGAGAAAAATGC 57.375 29.630 0.00 0.00 35.27 3.56
2889 3365 9.736414 TCCATCCTACATAGTGTATTACTACTC 57.264 37.037 0.00 0.00 44.30 2.59
3006 3489 7.929941 ATCCACTCCTCTTTTCTTCATTTAC 57.070 36.000 0.00 0.00 0.00 2.01
3012 3495 9.190317 ACTCCTCTTTTCTTCATTTACTTTGTT 57.810 29.630 0.00 0.00 0.00 2.83
3162 3649 6.227298 TCCATCAACTTCTTCTGATAGTCC 57.773 41.667 0.00 0.00 31.04 3.85
3423 3913 7.701539 TTTTCAGCATCTGCCTATTCTTTTA 57.298 32.000 0.00 0.00 43.38 1.52
3424 3914 7.701539 TTTCAGCATCTGCCTATTCTTTTAA 57.298 32.000 0.00 0.00 43.38 1.52
3425 3915 7.701539 TTCAGCATCTGCCTATTCTTTTAAA 57.298 32.000 0.00 0.00 43.38 1.52
3426 3916 7.701539 TCAGCATCTGCCTATTCTTTTAAAA 57.298 32.000 0.00 0.00 43.38 1.52
3427 3917 8.121305 TCAGCATCTGCCTATTCTTTTAAAAA 57.879 30.769 1.66 0.00 43.38 1.94
3620 4110 1.610102 GCACTGGAATCTGTCACTGCT 60.610 52.381 0.00 0.00 0.00 4.24
3647 4137 4.929808 CAGAAGTACCTAAAAGCACGTGAT 59.070 41.667 22.23 11.27 0.00 3.06
3715 4208 8.494433 AGATGTTATCTAGTGATTTTGGCCTTA 58.506 33.333 3.32 0.00 38.00 2.69
3782 4275 3.515502 TGAGTTTACTCTGATCCACCCAG 59.484 47.826 10.92 0.00 43.25 4.45
3786 4279 2.930109 ACTCTGATCCACCCAGTACT 57.070 50.000 0.00 0.00 33.57 2.73
3791 4284 4.279145 TCTGATCCACCCAGTACTTAGAC 58.721 47.826 0.00 0.00 33.57 2.59
3800 4293 7.071572 TCCACCCAGTACTTAGACTTTTTAAGT 59.928 37.037 0.00 3.50 46.38 2.24
3891 4384 5.455899 GCAGGGATGAACTAATGAAGGAGAT 60.456 44.000 0.00 0.00 0.00 2.75
3963 4474 9.606631 ATTCCTAAAGCTATCAACTAGTCAAAG 57.393 33.333 0.00 0.00 0.00 2.77
3979 4490 7.778382 ACTAGTCAAAGGGTGTCAACTAAATTT 59.222 33.333 0.00 0.00 0.00 1.82
4014 4525 6.293790 GCAACTAGTCAAAAATACCCGAACTT 60.294 38.462 0.00 0.00 0.00 2.66
4049 4560 3.809832 CACTAGGACAGTTGGAACACTTG 59.190 47.826 0.00 0.00 39.29 3.16
4055 4566 2.099592 ACAGTTGGAACACTTGCATGTG 59.900 45.455 26.25 26.25 39.29 3.21
4058 4569 1.687660 TTGGAACACTTGCATGTGCAT 59.312 42.857 27.41 18.72 46.21 3.96
4079 4590 1.074889 GGTTTCTTAAGTGGGGAGGCA 59.925 52.381 1.63 0.00 0.00 4.75
4107 4621 7.093945 TGACTAATTTCCATTGGAGTTTAAGCC 60.094 37.037 5.36 0.00 31.21 4.35
4125 4639 4.544564 AGCCTCCTTCTCTCCAGTTATA 57.455 45.455 0.00 0.00 0.00 0.98
4141 4655 7.792032 TCCAGTTATACTCCCTTGTAGAATTG 58.208 38.462 0.00 0.00 33.86 2.32
4160 4674 7.264947 AGAATTGGCATATTTTCTTTTACCCG 58.735 34.615 0.00 0.00 0.00 5.28
4177 4691 1.361668 CCGCACCATAGCAGTGTGTC 61.362 60.000 4.03 0.00 42.79 3.67
4190 4704 2.032894 CAGTGTGTCGTTCAATGGTGAC 60.033 50.000 0.00 0.00 31.90 3.67
4254 4771 5.938125 TGTTTAACCTGCCTATCTCAGTTTC 59.062 40.000 0.00 0.00 0.00 2.78
4291 4808 7.703328 TGAAAAACACCAGAGTCAAATTAGAC 58.297 34.615 0.00 0.00 38.81 2.59
4345 4862 0.333993 ACATCCAAGCTGCCAAGGAT 59.666 50.000 11.05 11.05 41.40 3.24
4388 4905 7.873739 ATTGCTTTGCTGTCTTTACATTTAC 57.126 32.000 0.00 0.00 34.37 2.01
4538 5055 2.222213 CGTTGCAAGTCGTTTACATCCA 59.778 45.455 0.00 0.00 0.00 3.41
4563 5080 3.207778 CCTGTTCAGTAAAAACGTGGGA 58.792 45.455 0.00 0.00 0.00 4.37
4855 5375 8.052748 TGCTATGAAGTTTGTAAATCCTGGTAT 58.947 33.333 0.00 0.00 0.00 2.73
4884 5406 9.432982 AGTTCTGGTTCTCTCTTATTCTATCAT 57.567 33.333 0.00 0.00 0.00 2.45
4923 5445 0.031178 GAATGGGCTAATGGCTTGCG 59.969 55.000 0.00 0.00 41.46 4.85
4935 5457 1.207593 GCTTGCGATGAAACTGCGT 59.792 52.632 0.00 0.00 0.00 5.24
4964 5486 4.176404 AGCCTCATGGGGTGTGAT 57.824 55.556 14.66 0.00 45.16 3.06
4965 5487 2.402238 AGCCTCATGGGGTGTGATT 58.598 52.632 14.66 0.00 45.16 2.57
4974 5496 2.035632 TGGGGTGTGATTTTTGTGTCC 58.964 47.619 0.00 0.00 0.00 4.02
4976 5500 2.632512 GGGGTGTGATTTTTGTGTCCAT 59.367 45.455 0.00 0.00 0.00 3.41
4977 5501 3.070878 GGGGTGTGATTTTTGTGTCCATT 59.929 43.478 0.00 0.00 0.00 3.16
4983 5507 5.011431 TGTGATTTTTGTGTCCATTATGCCA 59.989 36.000 0.00 0.00 0.00 4.92
4992 5516 4.627035 GTGTCCATTATGCCAAAAAGCTTC 59.373 41.667 0.00 0.00 0.00 3.86
4994 5518 3.761218 TCCATTATGCCAAAAAGCTTCGA 59.239 39.130 0.00 0.00 0.00 3.71
5034 5585 9.221775 GTAAACTCTGTTTACAGTGTCAAAATG 57.778 33.333 21.30 0.00 46.26 2.32
5053 5604 7.180051 TCAAAATGTCCTGGGTATTTATTGCTT 59.820 33.333 8.71 0.00 0.00 3.91
5066 5617 9.691362 GGTATTTATTGCTTCTCTTTTGTGAAA 57.309 29.630 0.00 0.00 32.45 2.69
5078 5630 6.759827 TCTCTTTTGTGAAAGGTACACTACAC 59.240 38.462 0.00 5.26 42.05 2.90
5093 5645 6.366315 ACACTACACGCAAATGAAACTTTA 57.634 33.333 0.00 0.00 0.00 1.85
5123 5684 6.470877 ACATGTTGTTTGTAAAACAGCTAACG 59.529 34.615 16.95 8.15 39.50 3.18
5124 5685 5.940595 TGTTGTTTGTAAAACAGCTAACGT 58.059 33.333 16.95 0.00 33.38 3.99
5166 5837 8.251026 TCCAATGACAGTAGTAAGTATTGTGAG 58.749 37.037 0.00 0.00 31.97 3.51
5285 6214 3.114668 TGTCTAGCAAACTAAACGGCA 57.885 42.857 0.00 0.00 0.00 5.69
5286 6215 3.468770 TGTCTAGCAAACTAAACGGCAA 58.531 40.909 0.00 0.00 0.00 4.52
5502 6435 2.292267 GATGTGGCATGGGTTCTGTAG 58.708 52.381 0.00 0.00 0.00 2.74
5542 6475 4.139786 TGATCATATTGCTTGCTCTTCCC 58.860 43.478 0.00 0.00 0.00 3.97
5593 6527 6.085555 TGACTACCTACAGAGTTGAACAAG 57.914 41.667 0.00 0.00 0.00 3.16
5608 6542 1.402787 ACAAGAACCAGGCAAACCAG 58.597 50.000 0.00 0.00 39.06 4.00
5625 6559 6.381801 CAAACCAGTGAGGATGTAATTTCAC 58.618 40.000 0.00 0.00 39.81 3.18
5672 6606 3.887621 TTGCTGCTACGAACCTCTAAT 57.112 42.857 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.324740 ACGCCACCCACTATAAGCGA 61.325 55.000 9.36 0.00 46.03 4.93
1 2 4.027755 CGCCACCCACTATAAGCG 57.972 61.111 0.00 0.00 37.39 4.68
2 3 0.177141 TCACGCCACCCACTATAAGC 59.823 55.000 0.00 0.00 0.00 3.09
3 4 1.480954 ACTCACGCCACCCACTATAAG 59.519 52.381 0.00 0.00 0.00 1.73
4 5 1.206132 CACTCACGCCACCCACTATAA 59.794 52.381 0.00 0.00 0.00 0.98
5 6 0.821517 CACTCACGCCACCCACTATA 59.178 55.000 0.00 0.00 0.00 1.31
6 7 0.902984 TCACTCACGCCACCCACTAT 60.903 55.000 0.00 0.00 0.00 2.12
7 8 1.532078 TCACTCACGCCACCCACTA 60.532 57.895 0.00 0.00 0.00 2.74
8 9 2.842462 TCACTCACGCCACCCACT 60.842 61.111 0.00 0.00 0.00 4.00
9 10 2.665185 GTCACTCACGCCACCCAC 60.665 66.667 0.00 0.00 0.00 4.61
10 11 3.157949 TGTCACTCACGCCACCCA 61.158 61.111 0.00 0.00 0.00 4.51
11 12 2.357517 CTGTCACTCACGCCACCC 60.358 66.667 0.00 0.00 0.00 4.61
12 13 0.320771 ATTCTGTCACTCACGCCACC 60.321 55.000 0.00 0.00 0.00 4.61
13 14 1.993370 GTATTCTGTCACTCACGCCAC 59.007 52.381 0.00 0.00 0.00 5.01
14 15 1.616374 TGTATTCTGTCACTCACGCCA 59.384 47.619 0.00 0.00 0.00 5.69
15 16 1.993370 GTGTATTCTGTCACTCACGCC 59.007 52.381 0.00 0.00 0.00 5.68
16 17 2.663602 CTGTGTATTCTGTCACTCACGC 59.336 50.000 0.00 0.00 35.82 5.34
17 18 3.914966 GTCTGTGTATTCTGTCACTCACG 59.085 47.826 0.00 0.00 35.82 4.35
18 19 4.021894 AGGTCTGTGTATTCTGTCACTCAC 60.022 45.833 0.00 0.00 35.82 3.51
19 20 4.021981 CAGGTCTGTGTATTCTGTCACTCA 60.022 45.833 0.00 0.00 35.82 3.41
20 21 4.218635 TCAGGTCTGTGTATTCTGTCACTC 59.781 45.833 0.00 0.00 35.82 3.51
21 22 4.152647 TCAGGTCTGTGTATTCTGTCACT 58.847 43.478 0.00 0.00 35.82 3.41
22 23 4.021894 ACTCAGGTCTGTGTATTCTGTCAC 60.022 45.833 4.14 0.00 35.78 3.67
23 24 4.152647 ACTCAGGTCTGTGTATTCTGTCA 58.847 43.478 4.14 0.00 35.78 3.58
24 25 4.792521 ACTCAGGTCTGTGTATTCTGTC 57.207 45.455 4.14 0.00 35.78 3.51
25 26 5.775701 ACTTACTCAGGTCTGTGTATTCTGT 59.224 40.000 11.94 7.67 38.72 3.41
26 27 6.096036 CACTTACTCAGGTCTGTGTATTCTG 58.904 44.000 11.94 6.08 38.72 3.02
27 28 5.186021 CCACTTACTCAGGTCTGTGTATTCT 59.814 44.000 11.94 0.00 38.72 2.40
28 29 5.411781 CCACTTACTCAGGTCTGTGTATTC 58.588 45.833 11.94 0.00 38.72 1.75
29 30 4.223032 CCCACTTACTCAGGTCTGTGTATT 59.777 45.833 11.94 2.85 38.72 1.89
30 31 3.769844 CCCACTTACTCAGGTCTGTGTAT 59.230 47.826 11.94 0.00 38.72 2.29
31 32 3.162666 CCCACTTACTCAGGTCTGTGTA 58.837 50.000 8.32 8.32 38.18 2.90
32 33 1.971357 CCCACTTACTCAGGTCTGTGT 59.029 52.381 10.02 10.02 40.05 3.72
33 34 1.338200 GCCCACTTACTCAGGTCTGTG 60.338 57.143 0.00 0.00 0.00 3.66
34 35 0.977395 GCCCACTTACTCAGGTCTGT 59.023 55.000 0.00 0.00 0.00 3.41
35 36 1.270907 AGCCCACTTACTCAGGTCTG 58.729 55.000 0.00 0.00 0.00 3.51
36 37 2.921834 TAGCCCACTTACTCAGGTCT 57.078 50.000 0.00 0.00 0.00 3.85
37 38 3.798202 CAATAGCCCACTTACTCAGGTC 58.202 50.000 0.00 0.00 0.00 3.85
38 39 2.092914 GCAATAGCCCACTTACTCAGGT 60.093 50.000 0.00 0.00 33.58 4.00
39 40 2.565841 GCAATAGCCCACTTACTCAGG 58.434 52.381 0.00 0.00 33.58 3.86
40 41 2.159099 TCGCAATAGCCCACTTACTCAG 60.159 50.000 0.00 0.00 37.52 3.35
41 42 1.828595 TCGCAATAGCCCACTTACTCA 59.171 47.619 0.00 0.00 37.52 3.41
42 43 2.596904 TCGCAATAGCCCACTTACTC 57.403 50.000 0.00 0.00 37.52 2.59
43 44 3.206150 CATTCGCAATAGCCCACTTACT 58.794 45.455 0.00 0.00 37.52 2.24
44 45 2.290641 CCATTCGCAATAGCCCACTTAC 59.709 50.000 0.00 0.00 37.52 2.34
45 46 2.571212 CCATTCGCAATAGCCCACTTA 58.429 47.619 0.00 0.00 37.52 2.24
46 47 1.392589 CCATTCGCAATAGCCCACTT 58.607 50.000 0.00 0.00 37.52 3.16
47 48 0.466189 CCCATTCGCAATAGCCCACT 60.466 55.000 0.00 0.00 37.52 4.00
48 49 0.465460 TCCCATTCGCAATAGCCCAC 60.465 55.000 0.00 0.00 37.52 4.61
49 50 0.257328 TTCCCATTCGCAATAGCCCA 59.743 50.000 0.00 0.00 37.52 5.36
50 51 1.620822 ATTCCCATTCGCAATAGCCC 58.379 50.000 0.00 0.00 37.52 5.19
51 52 4.518970 TCTTTATTCCCATTCGCAATAGCC 59.481 41.667 0.00 0.00 37.52 3.93
52 53 5.335191 CCTCTTTATTCCCATTCGCAATAGC 60.335 44.000 0.00 0.00 37.42 2.97
53 54 5.997746 TCCTCTTTATTCCCATTCGCAATAG 59.002 40.000 0.00 0.00 0.00 1.73
54 55 5.763204 GTCCTCTTTATTCCCATTCGCAATA 59.237 40.000 0.00 0.00 0.00 1.90
55 56 4.580580 GTCCTCTTTATTCCCATTCGCAAT 59.419 41.667 0.00 0.00 0.00 3.56
56 57 3.945285 GTCCTCTTTATTCCCATTCGCAA 59.055 43.478 0.00 0.00 0.00 4.85
57 58 3.199946 AGTCCTCTTTATTCCCATTCGCA 59.800 43.478 0.00 0.00 0.00 5.10
58 59 3.809905 AGTCCTCTTTATTCCCATTCGC 58.190 45.455 0.00 0.00 0.00 4.70
59 60 5.428253 TCAAGTCCTCTTTATTCCCATTCG 58.572 41.667 0.00 0.00 0.00 3.34
60 61 8.214364 AGTATCAAGTCCTCTTTATTCCCATTC 58.786 37.037 0.00 0.00 0.00 2.67
61 62 8.107196 AGTATCAAGTCCTCTTTATTCCCATT 57.893 34.615 0.00 0.00 0.00 3.16
62 63 7.698163 AGTATCAAGTCCTCTTTATTCCCAT 57.302 36.000 0.00 0.00 0.00 4.00
63 64 7.510675 AAGTATCAAGTCCTCTTTATTCCCA 57.489 36.000 0.00 0.00 0.00 4.37
70 71 9.553064 CATAGCATTAAGTATCAAGTCCTCTTT 57.447 33.333 0.00 0.00 0.00 2.52
71 72 8.153550 CCATAGCATTAAGTATCAAGTCCTCTT 58.846 37.037 0.00 0.00 0.00 2.85
72 73 7.291182 ACCATAGCATTAAGTATCAAGTCCTCT 59.709 37.037 0.00 0.00 0.00 3.69
73 74 7.445945 ACCATAGCATTAAGTATCAAGTCCTC 58.554 38.462 0.00 0.00 0.00 3.71
74 75 7.380423 ACCATAGCATTAAGTATCAAGTCCT 57.620 36.000 0.00 0.00 0.00 3.85
75 76 7.715249 TCAACCATAGCATTAAGTATCAAGTCC 59.285 37.037 0.00 0.00 0.00 3.85
76 77 8.662781 TCAACCATAGCATTAAGTATCAAGTC 57.337 34.615 0.00 0.00 0.00 3.01
77 78 8.267894 ACTCAACCATAGCATTAAGTATCAAGT 58.732 33.333 0.00 0.00 0.00 3.16
78 79 8.668510 ACTCAACCATAGCATTAAGTATCAAG 57.331 34.615 0.00 0.00 0.00 3.02
79 80 9.461312 AAACTCAACCATAGCATTAAGTATCAA 57.539 29.630 0.00 0.00 0.00 2.57
83 84 9.169592 GGTTAAACTCAACCATAGCATTAAGTA 57.830 33.333 0.17 0.00 46.14 2.24
84 85 8.051901 GGTTAAACTCAACCATAGCATTAAGT 57.948 34.615 0.17 0.00 46.14 2.24
88 89 7.888546 ACTAAGGTTAAACTCAACCATAGCATT 59.111 33.333 14.13 0.56 46.57 3.56
89 90 7.336931 CACTAAGGTTAAACTCAACCATAGCAT 59.663 37.037 14.13 0.00 46.57 3.79
90 91 6.653320 CACTAAGGTTAAACTCAACCATAGCA 59.347 38.462 14.13 0.00 46.57 3.49
91 92 6.877322 TCACTAAGGTTAAACTCAACCATAGC 59.123 38.462 14.13 0.00 46.57 2.97
97 98 8.290325 CCAAAGATCACTAAGGTTAAACTCAAC 58.710 37.037 0.00 0.00 0.00 3.18
98 99 7.996644 ACCAAAGATCACTAAGGTTAAACTCAA 59.003 33.333 0.00 0.00 32.14 3.02
99 100 7.514721 ACCAAAGATCACTAAGGTTAAACTCA 58.485 34.615 0.00 0.00 32.14 3.41
100 101 7.981102 ACCAAAGATCACTAAGGTTAAACTC 57.019 36.000 0.00 0.00 32.14 3.01
101 102 8.657712 ACTACCAAAGATCACTAAGGTTAAACT 58.342 33.333 0.00 0.00 35.81 2.66
102 103 8.843885 ACTACCAAAGATCACTAAGGTTAAAC 57.156 34.615 0.00 0.00 35.81 2.01
103 104 9.280174 CAACTACCAAAGATCACTAAGGTTAAA 57.720 33.333 0.00 0.00 35.81 1.52
104 105 7.389607 GCAACTACCAAAGATCACTAAGGTTAA 59.610 37.037 0.00 0.00 35.81 2.01
105 106 6.877322 GCAACTACCAAAGATCACTAAGGTTA 59.123 38.462 0.00 0.00 35.81 2.85
106 107 5.705905 GCAACTACCAAAGATCACTAAGGTT 59.294 40.000 0.00 0.00 35.81 3.50
107 108 5.246307 GCAACTACCAAAGATCACTAAGGT 58.754 41.667 0.00 0.00 37.27 3.50
108 109 4.330074 CGCAACTACCAAAGATCACTAAGG 59.670 45.833 0.00 0.00 0.00 2.69
109 110 4.330074 CCGCAACTACCAAAGATCACTAAG 59.670 45.833 0.00 0.00 0.00 2.18
110 111 4.020928 TCCGCAACTACCAAAGATCACTAA 60.021 41.667 0.00 0.00 0.00 2.24
111 112 3.512329 TCCGCAACTACCAAAGATCACTA 59.488 43.478 0.00 0.00 0.00 2.74
112 113 2.301870 TCCGCAACTACCAAAGATCACT 59.698 45.455 0.00 0.00 0.00 3.41
113 114 2.695359 TCCGCAACTACCAAAGATCAC 58.305 47.619 0.00 0.00 0.00 3.06
114 115 3.270027 CATCCGCAACTACCAAAGATCA 58.730 45.455 0.00 0.00 0.00 2.92
115 116 2.032178 GCATCCGCAACTACCAAAGATC 59.968 50.000 0.00 0.00 38.36 2.75
116 117 2.017049 GCATCCGCAACTACCAAAGAT 58.983 47.619 0.00 0.00 38.36 2.40
117 118 1.003118 AGCATCCGCAACTACCAAAGA 59.997 47.619 0.00 0.00 42.27 2.52
118 119 1.453155 AGCATCCGCAACTACCAAAG 58.547 50.000 0.00 0.00 42.27 2.77
119 120 1.539388 CAAGCATCCGCAACTACCAAA 59.461 47.619 0.00 0.00 42.27 3.28
120 121 1.164411 CAAGCATCCGCAACTACCAA 58.836 50.000 0.00 0.00 42.27 3.67
121 122 1.305219 GCAAGCATCCGCAACTACCA 61.305 55.000 0.00 0.00 42.27 3.25
122 123 1.026718 AGCAAGCATCCGCAACTACC 61.027 55.000 0.00 0.00 42.27 3.18
123 124 1.594862 CTAGCAAGCATCCGCAACTAC 59.405 52.381 0.00 0.00 42.27 2.73
124 125 1.480545 TCTAGCAAGCATCCGCAACTA 59.519 47.619 0.00 0.00 42.27 2.24
125 126 0.250234 TCTAGCAAGCATCCGCAACT 59.750 50.000 0.00 0.00 42.27 3.16
126 127 0.654683 CTCTAGCAAGCATCCGCAAC 59.345 55.000 0.00 0.00 42.27 4.17
127 128 0.250234 ACTCTAGCAAGCATCCGCAA 59.750 50.000 0.00 0.00 42.27 4.85
128 129 0.250234 AACTCTAGCAAGCATCCGCA 59.750 50.000 0.00 0.00 42.27 5.69
129 130 0.933796 GAACTCTAGCAAGCATCCGC 59.066 55.000 0.00 0.00 38.99 5.54
130 131 1.134699 TGGAACTCTAGCAAGCATCCG 60.135 52.381 0.00 0.00 31.41 4.18
131 132 2.698855 TGGAACTCTAGCAAGCATCC 57.301 50.000 0.00 0.00 0.00 3.51
132 133 6.874288 ATAATTGGAACTCTAGCAAGCATC 57.126 37.500 0.00 0.00 0.00 3.91
133 134 7.995488 ACTTATAATTGGAACTCTAGCAAGCAT 59.005 33.333 0.00 0.00 0.00 3.79
134 135 7.280876 CACTTATAATTGGAACTCTAGCAAGCA 59.719 37.037 0.00 0.00 0.00 3.91
135 136 7.634522 CACTTATAATTGGAACTCTAGCAAGC 58.365 38.462 0.00 0.00 0.00 4.01
136 137 7.280876 TGCACTTATAATTGGAACTCTAGCAAG 59.719 37.037 5.12 0.00 0.00 4.01
137 138 7.109501 TGCACTTATAATTGGAACTCTAGCAA 58.890 34.615 5.12 0.00 0.00 3.91
138 139 6.649155 TGCACTTATAATTGGAACTCTAGCA 58.351 36.000 5.12 0.00 0.00 3.49
139 140 7.736447 ATGCACTTATAATTGGAACTCTAGC 57.264 36.000 1.25 0.00 0.00 3.42
156 157 9.107177 CTTTCTCTACTTGAATCATATGCACTT 57.893 33.333 0.00 0.00 0.00 3.16
157 158 8.263640 ACTTTCTCTACTTGAATCATATGCACT 58.736 33.333 0.00 0.00 0.00 4.40
158 159 8.430801 ACTTTCTCTACTTGAATCATATGCAC 57.569 34.615 0.00 0.00 0.00 4.57
165 166 9.587772 GCTAACATACTTTCTCTACTTGAATCA 57.412 33.333 0.00 0.00 0.00 2.57
166 167 9.810545 AGCTAACATACTTTCTCTACTTGAATC 57.189 33.333 0.00 0.00 0.00 2.52
167 168 9.810545 GAGCTAACATACTTTCTCTACTTGAAT 57.189 33.333 0.00 0.00 0.00 2.57
168 169 8.803235 TGAGCTAACATACTTTCTCTACTTGAA 58.197 33.333 0.00 0.00 0.00 2.69
169 170 8.349568 TGAGCTAACATACTTTCTCTACTTGA 57.650 34.615 0.00 0.00 0.00 3.02
170 171 9.029243 CATGAGCTAACATACTTTCTCTACTTG 57.971 37.037 0.00 0.00 0.00 3.16
171 172 8.754080 ACATGAGCTAACATACTTTCTCTACTT 58.246 33.333 0.00 0.00 0.00 2.24
172 173 8.299990 ACATGAGCTAACATACTTTCTCTACT 57.700 34.615 0.00 0.00 0.00 2.57
173 174 8.410141 AGACATGAGCTAACATACTTTCTCTAC 58.590 37.037 0.00 0.00 0.00 2.59
174 175 8.526667 AGACATGAGCTAACATACTTTCTCTA 57.473 34.615 0.00 0.00 0.00 2.43
175 176 7.416964 AGACATGAGCTAACATACTTTCTCT 57.583 36.000 0.00 0.00 0.00 3.10
176 177 8.485976 AAAGACATGAGCTAACATACTTTCTC 57.514 34.615 0.00 0.00 34.52 2.87
177 178 8.854614 AAAAGACATGAGCTAACATACTTTCT 57.145 30.769 0.00 3.20 36.33 2.52
178 179 8.178313 GGAAAAGACATGAGCTAACATACTTTC 58.822 37.037 0.00 2.06 36.33 2.62
179 180 7.885399 AGGAAAAGACATGAGCTAACATACTTT 59.115 33.333 0.00 10.86 37.49 2.66
180 181 7.398024 AGGAAAAGACATGAGCTAACATACTT 58.602 34.615 0.00 0.00 32.35 2.24
181 182 6.951971 AGGAAAAGACATGAGCTAACATACT 58.048 36.000 0.00 0.00 0.00 2.12
182 183 6.818644 TGAGGAAAAGACATGAGCTAACATAC 59.181 38.462 0.00 0.00 0.00 2.39
183 184 6.946340 TGAGGAAAAGACATGAGCTAACATA 58.054 36.000 0.00 0.00 0.00 2.29
184 185 5.809001 TGAGGAAAAGACATGAGCTAACAT 58.191 37.500 0.00 0.00 0.00 2.71
185 186 5.227569 TGAGGAAAAGACATGAGCTAACA 57.772 39.130 0.00 0.00 0.00 2.41
186 187 9.547753 TTATATGAGGAAAAGACATGAGCTAAC 57.452 33.333 0.00 0.00 0.00 2.34
189 190 9.638176 ATTTTATATGAGGAAAAGACATGAGCT 57.362 29.630 0.00 0.00 0.00 4.09
193 194 9.806203 TGCAATTTTATATGAGGAAAAGACATG 57.194 29.630 0.00 0.00 0.00 3.21
195 196 9.806203 CATGCAATTTTATATGAGGAAAAGACA 57.194 29.630 0.00 0.00 0.00 3.41
207 208 9.859427 CCGGTAATCATTCATGCAATTTTATAT 57.141 29.630 0.00 0.00 0.00 0.86
208 209 8.855110 ACCGGTAATCATTCATGCAATTTTATA 58.145 29.630 4.49 0.00 0.00 0.98
209 210 7.725251 ACCGGTAATCATTCATGCAATTTTAT 58.275 30.769 4.49 0.00 0.00 1.40
210 211 7.068103 AGACCGGTAATCATTCATGCAATTTTA 59.932 33.333 7.34 0.00 0.00 1.52
211 212 5.976458 ACCGGTAATCATTCATGCAATTTT 58.024 33.333 4.49 0.00 0.00 1.82
212 213 5.360714 AGACCGGTAATCATTCATGCAATTT 59.639 36.000 7.34 0.00 0.00 1.82
213 214 4.889409 AGACCGGTAATCATTCATGCAATT 59.111 37.500 7.34 0.00 0.00 2.32
214 215 4.464008 AGACCGGTAATCATTCATGCAAT 58.536 39.130 7.34 0.00 0.00 3.56
215 216 3.884895 AGACCGGTAATCATTCATGCAA 58.115 40.909 7.34 0.00 0.00 4.08
216 217 3.558931 AGACCGGTAATCATTCATGCA 57.441 42.857 7.34 0.00 0.00 3.96
217 218 4.632153 ACTAGACCGGTAATCATTCATGC 58.368 43.478 7.34 0.00 0.00 4.06
218 219 8.088365 TGATAACTAGACCGGTAATCATTCATG 58.912 37.037 7.34 0.00 0.00 3.07
219 220 8.190326 TGATAACTAGACCGGTAATCATTCAT 57.810 34.615 7.34 0.00 0.00 2.57
220 221 7.591421 TGATAACTAGACCGGTAATCATTCA 57.409 36.000 7.34 3.06 0.00 2.57
221 222 9.490379 AATTGATAACTAGACCGGTAATCATTC 57.510 33.333 7.34 0.06 0.00 2.67
222 223 9.273016 CAATTGATAACTAGACCGGTAATCATT 57.727 33.333 7.34 0.99 0.00 2.57
223 224 7.387948 GCAATTGATAACTAGACCGGTAATCAT 59.612 37.037 7.34 0.00 0.00 2.45
224 225 6.704493 GCAATTGATAACTAGACCGGTAATCA 59.296 38.462 7.34 7.56 0.00 2.57
225 226 6.147328 GGCAATTGATAACTAGACCGGTAATC 59.853 42.308 7.34 4.89 0.00 1.75
226 227 5.995897 GGCAATTGATAACTAGACCGGTAAT 59.004 40.000 7.34 0.96 0.00 1.89
227 228 5.129815 AGGCAATTGATAACTAGACCGGTAA 59.870 40.000 7.34 0.00 0.00 2.85
228 229 4.652421 AGGCAATTGATAACTAGACCGGTA 59.348 41.667 7.34 0.00 0.00 4.02
229 230 3.454812 AGGCAATTGATAACTAGACCGGT 59.545 43.478 6.92 6.92 0.00 5.28
230 231 4.073293 AGGCAATTGATAACTAGACCGG 57.927 45.455 10.34 0.00 0.00 5.28
231 232 5.696724 CCTTAGGCAATTGATAACTAGACCG 59.303 44.000 10.34 0.00 0.00 4.79
232 233 6.827727 TCCTTAGGCAATTGATAACTAGACC 58.172 40.000 10.34 0.00 0.00 3.85
233 234 9.998106 TTATCCTTAGGCAATTGATAACTAGAC 57.002 33.333 10.34 0.00 0.00 2.59
237 238 9.866655 TCATTTATCCTTAGGCAATTGATAACT 57.133 29.630 10.34 3.76 30.07 2.24
238 239 9.899226 GTCATTTATCCTTAGGCAATTGATAAC 57.101 33.333 10.34 0.00 30.07 1.89
239 240 9.866655 AGTCATTTATCCTTAGGCAATTGATAA 57.133 29.630 10.34 6.51 0.00 1.75
240 241 9.866655 AAGTCATTTATCCTTAGGCAATTGATA 57.133 29.630 10.34 0.00 0.00 2.15
241 242 8.773033 AAGTCATTTATCCTTAGGCAATTGAT 57.227 30.769 10.34 0.00 0.00 2.57
242 243 8.593945 AAAGTCATTTATCCTTAGGCAATTGA 57.406 30.769 10.34 0.28 0.00 2.57
243 244 8.689972 AGAAAGTCATTTATCCTTAGGCAATTG 58.310 33.333 0.00 0.00 0.00 2.32
244 245 8.829373 AGAAAGTCATTTATCCTTAGGCAATT 57.171 30.769 0.00 0.00 0.00 2.32
245 246 8.689972 CAAGAAAGTCATTTATCCTTAGGCAAT 58.310 33.333 0.00 0.00 0.00 3.56
246 247 7.669722 ACAAGAAAGTCATTTATCCTTAGGCAA 59.330 33.333 0.00 0.00 0.00 4.52
247 248 7.175104 ACAAGAAAGTCATTTATCCTTAGGCA 58.825 34.615 0.00 0.00 0.00 4.75
248 249 7.631717 ACAAGAAAGTCATTTATCCTTAGGC 57.368 36.000 0.00 0.00 0.00 3.93
249 250 9.231297 TCAACAAGAAAGTCATTTATCCTTAGG 57.769 33.333 0.00 0.00 0.00 2.69
251 252 9.567776 TGTCAACAAGAAAGTCATTTATCCTTA 57.432 29.630 0.00 0.00 0.00 2.69
252 253 8.463930 TGTCAACAAGAAAGTCATTTATCCTT 57.536 30.769 0.00 0.00 0.00 3.36
253 254 8.463930 TTGTCAACAAGAAAGTCATTTATCCT 57.536 30.769 0.00 0.00 0.00 3.24
254 255 9.528018 TTTTGTCAACAAGAAAGTCATTTATCC 57.472 29.630 0.00 0.00 37.15 2.59
256 257 9.034544 GCTTTTGTCAACAAGAAAGTCATTTAT 57.965 29.630 10.05 0.00 37.15 1.40
257 258 8.250332 AGCTTTTGTCAACAAGAAAGTCATTTA 58.750 29.630 10.05 0.00 37.15 1.40
258 259 7.099120 AGCTTTTGTCAACAAGAAAGTCATTT 58.901 30.769 10.05 0.00 37.15 2.32
259 260 6.633856 AGCTTTTGTCAACAAGAAAGTCATT 58.366 32.000 10.05 0.00 37.15 2.57
260 261 6.212888 AGCTTTTGTCAACAAGAAAGTCAT 57.787 33.333 10.05 0.00 37.15 3.06
261 262 5.643379 AGCTTTTGTCAACAAGAAAGTCA 57.357 34.783 10.05 0.00 37.15 3.41
262 263 7.643579 AGATAGCTTTTGTCAACAAGAAAGTC 58.356 34.615 0.00 3.23 37.15 3.01
263 264 7.573968 AGATAGCTTTTGTCAACAAGAAAGT 57.426 32.000 0.00 1.30 37.15 2.66
264 265 8.778358 AGTAGATAGCTTTTGTCAACAAGAAAG 58.222 33.333 0.00 3.88 37.15 2.62
265 266 8.677148 AGTAGATAGCTTTTGTCAACAAGAAA 57.323 30.769 0.00 0.00 37.15 2.52
266 267 8.677148 AAGTAGATAGCTTTTGTCAACAAGAA 57.323 30.769 0.00 0.00 37.15 2.52
267 268 8.677148 AAAGTAGATAGCTTTTGTCAACAAGA 57.323 30.769 0.00 0.00 37.15 3.02
278 279 9.681062 TGCAAGGTAATAAAAGTAGATAGCTTT 57.319 29.630 0.00 0.00 37.73 3.51
279 280 9.681062 TTGCAAGGTAATAAAAGTAGATAGCTT 57.319 29.630 0.00 0.00 35.39 3.74
280 281 9.853177 ATTGCAAGGTAATAAAAGTAGATAGCT 57.147 29.630 4.94 0.00 0.00 3.32
288 289 8.789762 ACGAGTAAATTGCAAGGTAATAAAAGT 58.210 29.630 4.94 0.00 0.00 2.66
301 302 9.697250 CGAGAATAAAATTACGAGTAAATTGCA 57.303 29.630 0.00 0.00 0.00 4.08
302 303 8.670668 GCGAGAATAAAATTACGAGTAAATTGC 58.329 33.333 0.00 0.00 0.00 3.56
303 304 9.697250 TGCGAGAATAAAATTACGAGTAAATTG 57.303 29.630 0.00 0.00 0.00 2.32
306 307 9.749490 CTTTGCGAGAATAAAATTACGAGTAAA 57.251 29.630 0.00 0.00 0.00 2.01
307 308 8.928733 ACTTTGCGAGAATAAAATTACGAGTAA 58.071 29.630 0.00 0.00 0.00 2.24
308 309 8.470040 ACTTTGCGAGAATAAAATTACGAGTA 57.530 30.769 0.00 0.00 0.00 2.59
309 310 7.360575 ACTTTGCGAGAATAAAATTACGAGT 57.639 32.000 0.00 0.00 0.00 4.18
310 311 8.592998 AGTACTTTGCGAGAATAAAATTACGAG 58.407 33.333 0.00 0.00 29.34 4.18
311 312 8.470040 AGTACTTTGCGAGAATAAAATTACGA 57.530 30.769 0.00 0.00 29.34 3.43
312 313 8.377681 TGAGTACTTTGCGAGAATAAAATTACG 58.622 33.333 0.00 0.00 29.34 3.18
321 322 8.730680 ACAAAATTATGAGTACTTTGCGAGAAT 58.269 29.630 0.00 0.00 0.00 2.40
322 323 8.094798 ACAAAATTATGAGTACTTTGCGAGAA 57.905 30.769 0.00 0.00 0.00 2.87
323 324 7.667043 ACAAAATTATGAGTACTTTGCGAGA 57.333 32.000 0.00 0.00 0.00 4.04
324 325 8.230486 AGAACAAAATTATGAGTACTTTGCGAG 58.770 33.333 0.00 0.00 0.00 5.03
325 326 8.094798 AGAACAAAATTATGAGTACTTTGCGA 57.905 30.769 0.00 0.00 0.00 5.10
326 327 8.629986 CAAGAACAAAATTATGAGTACTTTGCG 58.370 33.333 0.00 0.00 0.00 4.85
327 328 8.427774 GCAAGAACAAAATTATGAGTACTTTGC 58.572 33.333 0.00 0.00 0.00 3.68
328 329 9.462174 TGCAAGAACAAAATTATGAGTACTTTG 57.538 29.630 0.00 0.00 0.00 2.77
343 344 9.376075 TGAATGAAACTATTTTGCAAGAACAAA 57.624 25.926 0.00 0.00 37.74 2.83
344 345 8.939201 TGAATGAAACTATTTTGCAAGAACAA 57.061 26.923 0.00 0.00 0.00 2.83
345 346 8.939201 TTGAATGAAACTATTTTGCAAGAACA 57.061 26.923 0.00 0.00 0.00 3.18
346 347 8.490355 CCTTGAATGAAACTATTTTGCAAGAAC 58.510 33.333 0.00 0.00 33.87 3.01
347 348 7.656948 CCCTTGAATGAAACTATTTTGCAAGAA 59.343 33.333 0.00 0.00 33.87 2.52
348 349 7.153985 CCCTTGAATGAAACTATTTTGCAAGA 58.846 34.615 0.00 0.00 33.87 3.02
349 350 6.128472 GCCCTTGAATGAAACTATTTTGCAAG 60.128 38.462 0.00 0.00 0.00 4.01
350 351 5.700373 GCCCTTGAATGAAACTATTTTGCAA 59.300 36.000 0.00 0.00 0.00 4.08
351 352 5.221601 TGCCCTTGAATGAAACTATTTTGCA 60.222 36.000 0.00 0.00 0.00 4.08
352 353 5.237048 TGCCCTTGAATGAAACTATTTTGC 58.763 37.500 0.00 0.00 0.00 3.68
353 354 6.366877 CACTGCCCTTGAATGAAACTATTTTG 59.633 38.462 0.00 0.00 0.00 2.44
354 355 6.267471 TCACTGCCCTTGAATGAAACTATTTT 59.733 34.615 0.00 0.00 0.00 1.82
355 356 5.774690 TCACTGCCCTTGAATGAAACTATTT 59.225 36.000 0.00 0.00 0.00 1.40
356 357 5.324409 TCACTGCCCTTGAATGAAACTATT 58.676 37.500 0.00 0.00 0.00 1.73
357 358 4.922206 TCACTGCCCTTGAATGAAACTAT 58.078 39.130 0.00 0.00 0.00 2.12
358 359 4.365514 TCACTGCCCTTGAATGAAACTA 57.634 40.909 0.00 0.00 0.00 2.24
359 360 3.228188 TCACTGCCCTTGAATGAAACT 57.772 42.857 0.00 0.00 0.00 2.66
360 361 3.507233 TCATCACTGCCCTTGAATGAAAC 59.493 43.478 0.00 0.00 0.00 2.78
361 362 3.765381 TCATCACTGCCCTTGAATGAAA 58.235 40.909 0.00 0.00 0.00 2.69
362 363 3.438216 TCATCACTGCCCTTGAATGAA 57.562 42.857 0.00 0.00 0.00 2.57
363 364 3.054213 TCATCATCACTGCCCTTGAATGA 60.054 43.478 0.00 0.00 0.00 2.57
367 368 1.911357 ACTCATCATCACTGCCCTTGA 59.089 47.619 0.00 0.00 0.00 3.02
375 376 4.355437 GACGATTCGAACTCATCATCACT 58.645 43.478 13.95 0.00 0.00 3.41
380 381 3.868757 AAGGACGATTCGAACTCATCA 57.131 42.857 13.95 0.00 0.00 3.07
390 396 5.220681 GCAAGGATCTGTTTAAGGACGATTC 60.221 44.000 0.00 0.00 0.00 2.52
421 427 0.672342 GATGGTGGCTTCATCATGGC 59.328 55.000 13.12 0.00 41.89 4.40
439 445 2.905075 CTGCGTTGGAGGTCATTATGA 58.095 47.619 0.00 0.00 0.00 2.15
462 468 4.928615 CAGATGGATTATCTCCTTTCTCGC 59.071 45.833 0.00 0.00 44.34 5.03
467 473 4.396522 GCTGCAGATGGATTATCTCCTTT 58.603 43.478 20.43 0.00 44.34 3.11
530 536 1.680249 GGTTCTCCTGAAGATGGTGGC 60.680 57.143 0.00 0.00 32.82 5.01
587 593 1.593787 CGGTGAGAGGTGTGATGCT 59.406 57.895 0.00 0.00 0.00 3.79
588 594 1.448540 CCGGTGAGAGGTGTGATGC 60.449 63.158 0.00 0.00 0.00 3.91
606 612 3.560278 CGGTTACCGGCGACATGC 61.560 66.667 17.00 0.00 44.15 4.06
639 645 6.598064 GGCTAGCTATGGTGTTTTCTTAAAGA 59.402 38.462 15.72 0.00 0.00 2.52
647 653 3.780850 AGTAGGGCTAGCTATGGTGTTTT 59.219 43.478 15.72 0.00 0.00 2.43
698 715 1.144936 GCGGACAAGGAGGAGATGG 59.855 63.158 0.00 0.00 0.00 3.51
727 744 1.915614 GAGACGCATTGGCCACAGTG 61.916 60.000 3.88 10.62 37.38 3.66
728 745 1.672356 GAGACGCATTGGCCACAGT 60.672 57.895 3.88 2.51 36.38 3.55
729 746 2.401766 GGAGACGCATTGGCCACAG 61.402 63.158 3.88 0.94 36.38 3.66
730 747 2.359850 GGAGACGCATTGGCCACA 60.360 61.111 3.88 0.00 36.38 4.17
800 818 2.435586 CTGCGTGGCCTCCTTGAG 60.436 66.667 3.32 0.00 0.00 3.02
801 819 3.240134 GACTGCGTGGCCTCCTTGA 62.240 63.158 3.32 0.00 0.00 3.02
950 968 2.266055 GAGGTCACGAGGGCAAGG 59.734 66.667 0.00 0.00 0.00 3.61
953 971 4.988716 ACGGAGGTCACGAGGGCA 62.989 66.667 0.00 0.00 34.93 5.36
1344 1362 1.681327 GTAGGCGACAGGAGGTGGA 60.681 63.158 0.00 0.00 0.00 4.02
1354 1372 1.817209 CAGGAGGAAGGTAGGCGAC 59.183 63.158 0.00 0.00 0.00 5.19
1356 1374 2.501610 GCAGGAGGAAGGTAGGCG 59.498 66.667 0.00 0.00 0.00 5.52
1358 1376 2.501610 GCGCAGGAGGAAGGTAGG 59.498 66.667 0.30 0.00 0.00 3.18
1367 1385 0.531532 CCAGATAACAGGCGCAGGAG 60.532 60.000 10.83 0.00 0.00 3.69
1368 1386 0.975556 TCCAGATAACAGGCGCAGGA 60.976 55.000 10.83 0.00 0.00 3.86
1369 1387 0.107456 ATCCAGATAACAGGCGCAGG 59.893 55.000 10.83 2.10 0.00 4.85
1378 1396 3.304525 CCAGACCGTCGTATCCAGATAAC 60.305 52.174 0.00 0.00 0.00 1.89
1380 1398 2.105306 TCCAGACCGTCGTATCCAGATA 59.895 50.000 0.00 0.00 0.00 1.98
1393 1413 1.258445 ACCCAGCTAACTCCAGACCG 61.258 60.000 0.00 0.00 0.00 4.79
1402 1422 3.427573 ACAACCCATAAACCCAGCTAAC 58.572 45.455 0.00 0.00 0.00 2.34
1428 1448 3.459598 CCAATCCCTCAGATCCCAACTAA 59.540 47.826 0.00 0.00 32.47 2.24
1429 1449 3.048600 CCAATCCCTCAGATCCCAACTA 58.951 50.000 0.00 0.00 32.47 2.24
1430 1450 1.849039 CCAATCCCTCAGATCCCAACT 59.151 52.381 0.00 0.00 32.47 3.16
1431 1451 1.846439 TCCAATCCCTCAGATCCCAAC 59.154 52.381 0.00 0.00 32.47 3.77
1442 1462 0.687354 CGATTCCCGATCCAATCCCT 59.313 55.000 0.00 0.00 41.76 4.20
1453 1473 1.299541 CAATTCCCACTCGATTCCCG 58.700 55.000 0.00 0.00 40.25 5.14
1456 1476 1.680338 CCCCAATTCCCACTCGATTC 58.320 55.000 0.00 0.00 0.00 2.52
1468 1488 2.677228 CACGAGGAGGCCCCAATT 59.323 61.111 12.24 0.00 37.41 2.32
1498 1518 1.423845 GCAGGTATTTCGCACCACG 59.576 57.895 0.00 0.00 45.62 4.94
1549 1570 5.151389 CAACCTAAATCGCAAAGGTGTTAC 58.849 41.667 0.00 0.00 42.86 2.50
1552 1573 2.030274 GCAACCTAAATCGCAAAGGTGT 60.030 45.455 0.00 0.00 42.86 4.16
1553 1574 2.228822 AGCAACCTAAATCGCAAAGGTG 59.771 45.455 0.00 0.00 42.86 4.00
1561 1582 6.381801 AGACAATCAAAAGCAACCTAAATCG 58.618 36.000 0.00 0.00 0.00 3.34
1581 1602 5.790593 ACAGGAACGAATTAAAGCTAGACA 58.209 37.500 0.00 0.00 0.00 3.41
1582 1603 6.147328 ACAACAGGAACGAATTAAAGCTAGAC 59.853 38.462 0.00 0.00 0.00 2.59
1584 1605 6.481954 ACAACAGGAACGAATTAAAGCTAG 57.518 37.500 0.00 0.00 0.00 3.42
1590 1611 7.265647 TCAATCAACAACAGGAACGAATTAA 57.734 32.000 0.00 0.00 0.00 1.40
1620 1641 3.801050 CCAGAGCATAACAGAATCGACTG 59.199 47.826 1.70 1.70 42.78 3.51
1634 1655 0.392193 CGGACTTTGAGCCAGAGCAT 60.392 55.000 0.00 0.00 43.56 3.79
1652 1673 3.209410 CCAAATCTCCTCCAAAGATCCG 58.791 50.000 0.00 0.00 32.29 4.18
1657 1678 3.439857 TCCACCAAATCTCCTCCAAAG 57.560 47.619 0.00 0.00 0.00 2.77
1685 1706 6.015519 TGCTAAGGCAAATGTATGACAAAAGT 60.016 34.615 0.00 0.00 46.36 2.66
1705 1726 4.371786 CTGAATGATCGGTAGCTTGCTAA 58.628 43.478 3.72 0.00 0.00 3.09
1709 1730 1.869767 GCCTGAATGATCGGTAGCTTG 59.130 52.381 0.00 0.00 0.00 4.01
1710 1731 1.765314 AGCCTGAATGATCGGTAGCTT 59.235 47.619 0.00 0.00 28.55 3.74
1711 1732 1.069823 CAGCCTGAATGATCGGTAGCT 59.930 52.381 0.00 0.00 31.86 3.32
1712 1733 1.506493 CAGCCTGAATGATCGGTAGC 58.494 55.000 0.00 0.00 0.00 3.58
1713 1734 1.688735 TCCAGCCTGAATGATCGGTAG 59.311 52.381 0.00 0.00 0.00 3.18
1714 1735 1.788229 TCCAGCCTGAATGATCGGTA 58.212 50.000 0.00 0.00 0.00 4.02
1715 1736 1.135094 ATCCAGCCTGAATGATCGGT 58.865 50.000 0.00 0.00 0.00 4.69
1716 1737 1.520494 CATCCAGCCTGAATGATCGG 58.480 55.000 0.00 0.00 0.00 4.18
1717 1738 1.071228 TCCATCCAGCCTGAATGATCG 59.929 52.381 0.00 0.00 0.00 3.69
1718 1739 2.945080 TCCATCCAGCCTGAATGATC 57.055 50.000 0.00 0.00 0.00 2.92
1719 1740 3.897657 AATCCATCCAGCCTGAATGAT 57.102 42.857 0.00 0.00 0.00 2.45
1762 1783 6.460123 CCACCCACACATAAATTAGCATCTTC 60.460 42.308 0.00 0.00 0.00 2.87
1906 1934 3.165071 AGAAAACCTATTGCTGTTGGGG 58.835 45.455 0.00 0.00 0.00 4.96
2275 2314 3.754323 TCCGAGTTCAACTGTTTTGTTGT 59.246 39.130 0.00 0.00 45.26 3.32
2367 2407 2.304092 GGAAGAGGTTTTCCCACGTTT 58.696 47.619 0.00 0.00 40.64 3.60
2402 2442 7.549488 CCCTCTACTACAAAACAGGTCATTTAG 59.451 40.741 0.00 0.00 0.00 1.85
2539 2630 9.145865 GTCTGAGTTCCAAACAAAATTTTTACA 57.854 29.630 0.00 0.00 0.00 2.41
2577 2668 6.767902 GCATTATTCTCAACCAAGTAGGATGA 59.232 38.462 0.00 0.00 45.87 2.92
2595 2686 8.259411 TGCAAGACCAATTCATTTAGCATTATT 58.741 29.630 0.00 0.00 0.00 1.40
2725 3201 7.717568 TCTAATATAGCTGGAGTGAAGTCAAC 58.282 38.462 0.00 0.00 0.00 3.18
2769 3245 7.201478 CGTAAAACAAACCAGCATTTTTCTCAA 60.201 33.333 0.00 0.00 0.00 3.02
2889 3365 4.766891 TCCCAGCCAAAGTAAGAAAATCAG 59.233 41.667 0.00 0.00 0.00 2.90
2974 3450 6.941857 AGAAAAGAGGAGTGGATAAGTCTTC 58.058 40.000 0.00 0.00 35.13 2.87
3162 3649 5.808540 CCTACATTGATGGAAAATGCACTTG 59.191 40.000 0.00 0.00 38.36 3.16
3432 3922 5.474532 ACTGATTGTTGCTCAATACACACAT 59.525 36.000 7.46 0.00 45.49 3.21
3435 3925 6.039159 TCAAACTGATTGTTGCTCAATACACA 59.961 34.615 7.46 2.83 45.49 3.72
3620 4110 4.315803 GTGCTTTTAGGTACTTCTGCTCA 58.684 43.478 0.00 0.00 41.75 4.26
3715 4208 3.748645 TGGTTAACAGGGCCATACAAT 57.251 42.857 6.18 0.00 0.00 2.71
3824 4317 2.456119 CCGACGTCATGCCTCTTGC 61.456 63.158 17.16 0.00 41.77 4.01
3864 4357 2.204463 TCATTAGTTCATCCCTGCCCA 58.796 47.619 0.00 0.00 0.00 5.36
3947 4458 6.037786 TGACACCCTTTGACTAGTTGATAG 57.962 41.667 0.00 0.00 37.53 2.08
3963 4474 7.215719 AGCTTTAGAAATTTAGTTGACACCC 57.784 36.000 0.00 0.00 0.00 4.61
3979 4490 8.848474 ATTTTTGACTAGTTGCTAGCTTTAGA 57.152 30.769 17.23 0.00 37.57 2.10
4014 4525 3.582647 TGTCCTAGTGCATTTCCTTCAGA 59.417 43.478 0.00 0.00 0.00 3.27
4049 4560 3.922240 CACTTAAGAAACCATGCACATGC 59.078 43.478 10.09 0.00 37.49 4.06
4055 4566 2.755103 CTCCCCACTTAAGAAACCATGC 59.245 50.000 10.09 0.00 0.00 4.06
4058 4569 1.074889 GCCTCCCCACTTAAGAAACCA 59.925 52.381 10.09 0.00 0.00 3.67
4079 4590 8.934023 TTAAACTCCAATGGAAATTAGTCACT 57.066 30.769 2.61 0.00 0.00 3.41
4107 4621 4.830600 GGGAGTATAACTGGAGAGAAGGAG 59.169 50.000 0.00 0.00 0.00 3.69
4113 4627 6.366340 TCTACAAGGGAGTATAACTGGAGAG 58.634 44.000 0.00 0.00 0.00 3.20
4125 4639 5.653255 ATATGCCAATTCTACAAGGGAGT 57.347 39.130 0.00 0.00 0.00 3.85
4141 4655 4.109766 GTGCGGGTAAAAGAAAATATGCC 58.890 43.478 0.00 0.00 0.00 4.40
4160 4674 0.670546 ACGACACACTGCTATGGTGC 60.671 55.000 0.00 0.00 38.14 5.01
4177 4691 5.171476 AGATCAAGTAGTCACCATTGAACG 58.829 41.667 0.00 0.00 35.47 3.95
4190 4704 8.970859 ATTGTTCCCTATTCAAGATCAAGTAG 57.029 34.615 0.00 0.00 0.00 2.57
4254 4771 8.980143 TCTGGTGTTTTTCAAACTAAAGAAAG 57.020 30.769 1.33 0.00 35.41 2.62
4291 4808 3.560636 ATTCCCCTGTTATTCTCGGTG 57.439 47.619 0.00 0.00 0.00 4.94
4345 4862 8.752005 AAGCAATAAAAGGATAATGAGCAGTA 57.248 30.769 0.00 0.00 0.00 2.74
4360 4877 8.885494 AATGTAAAGACAGCAAAGCAATAAAA 57.115 26.923 0.00 0.00 39.50 1.52
4538 5055 1.600485 CGTTTTTACTGAACAGGCGGT 59.400 47.619 6.76 0.00 0.00 5.68
4563 5080 1.838077 GTGCCCTAGACCCTGTTGTAT 59.162 52.381 0.00 0.00 0.00 2.29
4820 5340 4.333649 ACAAACTTCATAGCACATCATCGG 59.666 41.667 0.00 0.00 0.00 4.18
4864 5384 9.474920 CAAGACATGATAGAATAAGAGAGAACC 57.525 37.037 0.00 0.00 0.00 3.62
4884 5406 2.449518 TGCCCCTGGACCAAGACA 60.450 61.111 0.00 0.00 0.00 3.41
4935 5457 2.367894 CCATGAGGCTCAGCTAGATCAA 59.632 50.000 23.24 0.00 0.00 2.57
4959 5481 5.011431 TGGCATAATGGACACAAAAATCACA 59.989 36.000 0.00 0.00 0.00 3.58
4960 5482 5.477510 TGGCATAATGGACACAAAAATCAC 58.522 37.500 0.00 0.00 0.00 3.06
4961 5483 5.735285 TGGCATAATGGACACAAAAATCA 57.265 34.783 0.00 0.00 0.00 2.57
4962 5484 7.432350 TTTTGGCATAATGGACACAAAAATC 57.568 32.000 0.00 0.00 35.60 2.17
4963 5485 7.521910 GCTTTTTGGCATAATGGACACAAAAAT 60.522 33.333 11.85 0.00 42.90 1.82
4964 5486 6.238593 GCTTTTTGGCATAATGGACACAAAAA 60.239 34.615 11.18 11.18 42.17 1.94
4965 5487 5.238214 GCTTTTTGGCATAATGGACACAAAA 59.762 36.000 0.00 0.00 36.41 2.44
4974 5496 6.651755 ATTTCGAAGCTTTTTGGCATAATG 57.348 33.333 0.00 0.00 34.17 1.90
4976 5500 7.542890 TGATATTTCGAAGCTTTTTGGCATAA 58.457 30.769 0.00 0.00 34.17 1.90
4977 5501 7.094508 TGATATTTCGAAGCTTTTTGGCATA 57.905 32.000 0.00 0.00 34.17 3.14
4983 5507 7.147846 ACCATCCATGATATTTCGAAGCTTTTT 60.148 33.333 0.00 0.00 0.00 1.94
4992 5516 7.442364 ACAGAGTTTACCATCCATGATATTTCG 59.558 37.037 0.00 0.00 0.00 3.46
4994 5518 9.479549 AAACAGAGTTTACCATCCATGATATTT 57.520 29.630 0.00 0.00 0.00 1.40
5034 5585 5.685728 AGAGAAGCAATAAATACCCAGGAC 58.314 41.667 0.00 0.00 0.00 3.85
5053 5604 6.759827 GTGTAGTGTACCTTTCACAAAAGAGA 59.240 38.462 0.00 0.00 43.90 3.10
5066 5617 3.671008 TCATTTGCGTGTAGTGTACCT 57.329 42.857 0.00 0.00 0.00 3.08
5078 5630 6.417635 ACATGTCTTGTAAAGTTTCATTTGCG 59.582 34.615 0.00 0.00 46.34 4.85
5093 5645 6.310224 GCTGTTTTACAAACAACATGTCTTGT 59.690 34.615 19.05 19.05 41.53 3.16
5123 5684 9.109393 TGTCATTGGATTTCTAACTATTAGCAC 57.891 33.333 0.00 0.00 33.23 4.40
5124 5685 9.330063 CTGTCATTGGATTTCTAACTATTAGCA 57.670 33.333 0.00 0.00 33.23 3.49
5154 5825 6.909550 AAACAAATGGGCTCACAATACTTA 57.090 33.333 0.00 0.00 0.00 2.24
5286 6215 2.614057 CTCTCTGGTTCGCACACTTTTT 59.386 45.455 0.00 0.00 0.00 1.94
5303 6232 3.444034 TGTATGTGACTGCTACACCTCTC 59.556 47.826 0.00 0.00 37.45 3.20
5305 6234 3.868757 TGTATGTGACTGCTACACCTC 57.131 47.619 0.00 0.00 37.45 3.85
5421 6354 5.932303 TGTACTGAAGAAACAGGTCTATTGC 59.068 40.000 0.00 0.00 41.59 3.56
5466 6399 0.107017 CATCCAAAGCCAGGGACGAT 60.107 55.000 0.00 0.00 35.67 3.73
5502 6435 2.436417 TCATACAAAGGCCTGCAAGTC 58.564 47.619 5.69 0.00 0.00 3.01
5542 6475 0.325933 TGGCCAAGAGTGTGATGGAG 59.674 55.000 0.61 0.00 36.27 3.86
5593 6527 0.954452 CTCACTGGTTTGCCTGGTTC 59.046 55.000 0.00 0.00 37.95 3.62
5608 6542 7.819900 ACTAGTCAAGTGAAATTACATCCTCAC 59.180 37.037 0.00 0.00 36.93 3.51
5625 6559 7.821359 TCATTGAATCTCTGGAAACTAGTCAAG 59.179 37.037 0.00 0.00 0.00 3.02
5672 6606 4.688879 CGGATGCAGTTAGTTTTCAGTACA 59.311 41.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.