Multiple sequence alignment - TraesCS5A01G383600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G383600 chr5A 100.000 3661 0 0 1 3661 581298648 581302308 0.000000e+00 6761.0
1 TraesCS5A01G383600 chr5A 92.000 100 8 0 1 100 472082428 472082527 1.370000e-29 141.0
2 TraesCS5A01G383600 chr5B 89.272 3160 211 68 111 3204 567151894 567154991 0.000000e+00 3840.0
3 TraesCS5A01G383600 chr5B 95.085 468 19 3 3198 3661 567155013 567155480 0.000000e+00 734.0
4 TraesCS5A01G383600 chr5D 88.479 2413 182 49 641 3029 461211551 461213891 0.000000e+00 2828.0
5 TraesCS5A01G383600 chr5D 94.255 470 19 5 3198 3661 461214464 461214931 0.000000e+00 712.0
6 TraesCS5A01G383600 chr5D 90.892 527 27 2 111 617 461210912 461211437 0.000000e+00 688.0
7 TraesCS5A01G383600 chr5D 96.491 57 2 0 3026 3082 461214146 461214202 1.080000e-15 95.3
8 TraesCS5A01G383600 chr2D 94.737 95 5 0 1 95 161896415 161896509 8.190000e-32 148.0
9 TraesCS5A01G383600 chr2A 94.737 95 5 0 1 95 774861811 774861905 8.190000e-32 148.0
10 TraesCS5A01G383600 chr3D 93.814 97 6 0 1 97 39900916 39900820 2.950000e-31 147.0
11 TraesCS5A01G383600 chr3A 89.565 115 10 2 1 114 80519600 80519487 1.060000e-30 145.0
12 TraesCS5A01G383600 chr3A 90.110 91 8 1 2303 2393 10690972 10690883 2.310000e-22 117.0
13 TraesCS5A01G383600 chr7A 90.566 106 9 1 1 106 163778845 163778949 4.930000e-29 139.0
14 TraesCS5A01G383600 chr7A 100.000 29 0 0 2173 2201 450094690 450094662 2.000000e-03 54.7
15 TraesCS5A01G383600 chr4A 90.476 105 9 1 1 105 21507512 21507409 1.770000e-28 137.0
16 TraesCS5A01G383600 chr4D 88.496 113 12 1 1 112 95885024 95885136 6.380000e-28 135.0
17 TraesCS5A01G383600 chr4D 88.421 95 11 0 2301 2395 32768487 32768393 8.310000e-22 115.0
18 TraesCS5A01G383600 chr2B 87.826 115 11 2 1 113 522308288 522308175 8.250000e-27 132.0
19 TraesCS5A01G383600 chrUn 94.048 84 5 0 2310 2393 50872449 50872366 1.070000e-25 128.0
20 TraesCS5A01G383600 chrUn 94.048 84 5 0 2310 2393 50890361 50890278 1.070000e-25 128.0
21 TraesCS5A01G383600 chrUn 92.045 88 6 1 2305 2392 50872363 50872449 4.960000e-24 122.0
22 TraesCS5A01G383600 chrUn 92.045 88 6 1 2305 2392 50890275 50890361 4.960000e-24 122.0
23 TraesCS5A01G383600 chrUn 87.912 91 10 1 2303 2393 319858116 319858027 5.000000e-19 106.0
24 TraesCS5A01G383600 chr1B 86.275 102 13 1 2293 2393 667091028 667091129 3.870000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G383600 chr5A 581298648 581302308 3660 False 6761.000 6761 100.00000 1 3661 1 chr5A.!!$F2 3660
1 TraesCS5A01G383600 chr5B 567151894 567155480 3586 False 2287.000 3840 92.17850 111 3661 2 chr5B.!!$F1 3550
2 TraesCS5A01G383600 chr5D 461210912 461214931 4019 False 1080.825 2828 92.52925 111 3661 4 chr5D.!!$F1 3550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.317160 ACGTGGCGAATGTCTGAGAA 59.683 50.0 0.0 0.0 0.0 2.87 F
107 108 0.326904 TGCTCCCATCTCATGTCCCT 60.327 55.0 0.0 0.0 0.0 4.20 F
1562 1694 0.112412 AGGGGTTTGTTAGTGCTGGG 59.888 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1672 0.184933 AGCACTAACAAACCCCTGCA 59.815 50.000 0.0 0.0 0.00 4.41 R
1988 2131 1.204941 CCGAAGATCTCGTCAAGGGTT 59.795 52.381 0.0 0.0 46.65 4.11 R
3284 3854 0.031178 GAATGGGCTAATGGCTTGCG 59.969 55.000 0.0 0.0 41.46 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.261888 GACACGTGGCGAATGTCT 57.738 55.556 21.57 0.00 39.72 3.41
27 28 1.781555 GACACGTGGCGAATGTCTG 59.218 57.895 21.57 0.00 39.72 3.51
28 29 0.666274 GACACGTGGCGAATGTCTGA 60.666 55.000 21.57 0.00 39.72 3.27
29 30 0.667487 ACACGTGGCGAATGTCTGAG 60.667 55.000 21.57 0.00 0.00 3.35
30 31 0.388520 CACGTGGCGAATGTCTGAGA 60.389 55.000 7.95 0.00 0.00 3.27
31 32 0.317160 ACGTGGCGAATGTCTGAGAA 59.683 50.000 0.00 0.00 0.00 2.87
32 33 1.066858 ACGTGGCGAATGTCTGAGAAT 60.067 47.619 0.00 0.00 0.00 2.40
33 34 2.165641 ACGTGGCGAATGTCTGAGAATA 59.834 45.455 0.00 0.00 0.00 1.75
34 35 2.535984 CGTGGCGAATGTCTGAGAATAC 59.464 50.000 0.00 0.00 0.00 1.89
35 36 2.535984 GTGGCGAATGTCTGAGAATACG 59.464 50.000 0.00 0.00 0.00 3.06
36 37 2.165641 TGGCGAATGTCTGAGAATACGT 59.834 45.455 0.00 0.00 0.00 3.57
37 38 2.789893 GGCGAATGTCTGAGAATACGTC 59.210 50.000 0.00 0.00 0.00 4.34
38 39 3.435566 GCGAATGTCTGAGAATACGTCA 58.564 45.455 0.00 0.00 0.00 4.35
39 40 3.857665 GCGAATGTCTGAGAATACGTCAA 59.142 43.478 0.00 0.00 0.00 3.18
40 41 4.027295 GCGAATGTCTGAGAATACGTCAAG 60.027 45.833 0.00 0.00 0.00 3.02
41 42 5.096169 CGAATGTCTGAGAATACGTCAAGT 58.904 41.667 0.00 0.00 0.00 3.16
42 43 5.003872 CGAATGTCTGAGAATACGTCAAGTG 59.996 44.000 0.00 0.00 0.00 3.16
43 44 5.644977 ATGTCTGAGAATACGTCAAGTGA 57.355 39.130 0.00 0.00 0.00 3.41
44 45 4.795268 TGTCTGAGAATACGTCAAGTGAC 58.205 43.478 0.00 1.12 41.47 3.67
62 63 2.510238 GCTGATCGTTGCGAGGCT 60.510 61.111 0.00 0.00 39.91 4.58
63 64 2.103042 GCTGATCGTTGCGAGGCTT 61.103 57.895 0.00 0.00 39.91 4.35
64 65 2.002127 CTGATCGTTGCGAGGCTTC 58.998 57.895 0.00 0.00 39.91 3.86
65 66 1.424493 CTGATCGTTGCGAGGCTTCC 61.424 60.000 0.00 0.00 39.91 3.46
66 67 2.509336 ATCGTTGCGAGGCTTCCG 60.509 61.111 0.00 0.00 39.91 4.30
67 68 2.884087 GATCGTTGCGAGGCTTCCGA 62.884 60.000 0.00 0.00 39.91 4.55
68 69 2.501223 ATCGTTGCGAGGCTTCCGAA 62.501 55.000 0.00 0.00 39.91 4.30
69 70 2.730672 CGTTGCGAGGCTTCCGAAG 61.731 63.158 3.56 3.56 0.00 3.79
82 83 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
83 84 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
84 85 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
85 86 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
86 87 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
87 88 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
88 89 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
89 90 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
90 91 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
91 92 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
92 93 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
93 94 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
94 95 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
95 96 2.353406 GCTCGTTAACTAGTTGCTCCCA 60.353 50.000 18.56 0.00 0.00 4.37
96 97 3.679083 GCTCGTTAACTAGTTGCTCCCAT 60.679 47.826 18.56 0.00 0.00 4.00
97 98 4.113354 CTCGTTAACTAGTTGCTCCCATC 58.887 47.826 18.56 0.00 0.00 3.51
98 99 3.767673 TCGTTAACTAGTTGCTCCCATCT 59.232 43.478 18.56 0.00 0.00 2.90
99 100 4.113354 CGTTAACTAGTTGCTCCCATCTC 58.887 47.826 18.56 0.00 0.00 2.75
100 101 4.381612 CGTTAACTAGTTGCTCCCATCTCA 60.382 45.833 18.56 0.00 0.00 3.27
101 102 5.675538 GTTAACTAGTTGCTCCCATCTCAT 58.324 41.667 18.56 0.00 0.00 2.90
102 103 3.834489 ACTAGTTGCTCCCATCTCATG 57.166 47.619 0.00 0.00 0.00 3.07
103 104 3.110705 ACTAGTTGCTCCCATCTCATGT 58.889 45.455 0.00 0.00 0.00 3.21
104 105 2.706339 AGTTGCTCCCATCTCATGTC 57.294 50.000 0.00 0.00 0.00 3.06
105 106 1.211457 AGTTGCTCCCATCTCATGTCC 59.789 52.381 0.00 0.00 0.00 4.02
106 107 0.548031 TTGCTCCCATCTCATGTCCC 59.452 55.000 0.00 0.00 0.00 4.46
107 108 0.326904 TGCTCCCATCTCATGTCCCT 60.327 55.000 0.00 0.00 0.00 4.20
108 109 1.062198 TGCTCCCATCTCATGTCCCTA 60.062 52.381 0.00 0.00 0.00 3.53
109 110 2.050144 GCTCCCATCTCATGTCCCTAA 58.950 52.381 0.00 0.00 0.00 2.69
110 111 2.439507 GCTCCCATCTCATGTCCCTAAA 59.560 50.000 0.00 0.00 0.00 1.85
111 112 3.117888 GCTCCCATCTCATGTCCCTAAAA 60.118 47.826 0.00 0.00 0.00 1.52
112 113 4.628715 GCTCCCATCTCATGTCCCTAAAAA 60.629 45.833 0.00 0.00 0.00 1.94
162 163 4.378459 GGCCACGACTAAAAACAGATTCAG 60.378 45.833 0.00 0.00 0.00 3.02
351 354 0.691413 ATCCCCTTCTCCGTCTTCCC 60.691 60.000 0.00 0.00 0.00 3.97
363 366 0.528684 GTCTTCCCGCGGATTCTCAG 60.529 60.000 30.73 12.49 0.00 3.35
376 386 3.710722 CTCAGGCCAGCTTCCGGT 61.711 66.667 5.01 0.00 0.00 5.28
509 521 3.428045 GGCATGTTGAGTATTTGGCTGTC 60.428 47.826 0.00 0.00 0.00 3.51
568 600 0.541063 TCACTAGGCTGGGTTGTCGA 60.541 55.000 2.02 0.00 0.00 4.20
570 602 0.542232 ACTAGGCTGGGTTGTCGACT 60.542 55.000 17.92 0.00 0.00 4.18
586 618 1.002134 ACTGTCCAGAAATGGCCGG 60.002 57.895 0.00 0.00 0.00 6.13
599 631 3.053291 GCCGGATTTGTGCGTGGA 61.053 61.111 5.05 0.00 0.00 4.02
602 634 1.671054 CGGATTTGTGCGTGGACCT 60.671 57.895 0.00 0.00 0.00 3.85
632 697 6.071334 TGAGCTACTGGTTATGCATATCCTAC 60.071 42.308 26.69 14.43 0.00 3.18
660 782 3.260632 TGCTAAGCAATCACTAGGTGTGA 59.739 43.478 0.86 0.86 46.11 3.58
703 827 2.271800 GGTTTAGCACCAGATCGACAG 58.728 52.381 0.00 0.00 46.42 3.51
710 834 0.620556 ACCAGATCGACAGGGCAATT 59.379 50.000 0.00 0.00 0.00 2.32
715 839 4.321718 CAGATCGACAGGGCAATTCATAT 58.678 43.478 0.00 0.00 0.00 1.78
721 845 7.667043 TCGACAGGGCAATTCATATTATTAC 57.333 36.000 0.00 0.00 0.00 1.89
726 850 7.882791 ACAGGGCAATTCATATTATTACGATGA 59.117 33.333 0.00 0.00 0.00 2.92
766 890 5.912396 TGTTGCAGTAGCTTGTAAAATTTCG 59.088 36.000 0.00 0.00 42.74 3.46
804 929 4.737855 TCGTTGGAAGAAATAGAGAGGG 57.262 45.455 0.00 0.00 0.00 4.30
806 931 4.530946 TCGTTGGAAGAAATAGAGAGGGTT 59.469 41.667 0.00 0.00 0.00 4.11
808 933 5.351740 CGTTGGAAGAAATAGAGAGGGTTTC 59.648 44.000 0.00 0.00 33.24 2.78
813 938 6.295916 GGAAGAAATAGAGAGGGTTTCTGTGA 60.296 42.308 0.89 0.00 40.29 3.58
817 942 6.532988 AATAGAGAGGGTTTCTGTGAGTAC 57.467 41.667 0.00 0.00 35.87 2.73
820 945 5.258051 AGAGAGGGTTTCTGTGAGTACTAG 58.742 45.833 0.00 0.00 35.87 2.57
821 946 3.764972 AGAGGGTTTCTGTGAGTACTAGC 59.235 47.826 0.00 0.00 33.93 3.42
822 947 3.507411 AGGGTTTCTGTGAGTACTAGCA 58.493 45.455 0.00 0.00 0.00 3.49
823 948 3.511934 AGGGTTTCTGTGAGTACTAGCAG 59.488 47.826 16.03 16.03 0.00 4.24
824 949 3.258622 GGGTTTCTGTGAGTACTAGCAGT 59.741 47.826 19.45 0.00 0.00 4.40
825 950 4.262506 GGGTTTCTGTGAGTACTAGCAGTT 60.263 45.833 19.45 0.00 0.00 3.16
826 951 5.047519 GGGTTTCTGTGAGTACTAGCAGTTA 60.048 44.000 19.45 10.61 0.00 2.24
827 952 6.351117 GGGTTTCTGTGAGTACTAGCAGTTAT 60.351 42.308 19.45 0.00 0.00 1.89
828 953 7.097834 GGTTTCTGTGAGTACTAGCAGTTATT 58.902 38.462 19.45 0.00 0.00 1.40
829 954 7.603024 GGTTTCTGTGAGTACTAGCAGTTATTT 59.397 37.037 19.45 0.00 0.00 1.40
855 987 8.908786 TGTTGCAATTTCCTAGGAAGATATAG 57.091 34.615 23.11 12.60 35.38 1.31
874 1006 1.003696 AGTAGTTTTGGAGCCCTGAGC 59.996 52.381 0.00 0.00 44.25 4.26
892 1024 0.952984 GCACCTGTCTCTTGGCTGAC 60.953 60.000 0.00 0.00 0.00 3.51
1075 1207 1.063764 TGAAACCGTTCCCGAAAAACG 59.936 47.619 9.13 9.13 46.79 3.60
1149 1281 5.400066 TCGAAGACCATCATGTACAGAAA 57.600 39.130 0.33 0.00 0.00 2.52
1267 1399 2.790433 GGTATGCTTTTCCACTGACCA 58.210 47.619 0.00 0.00 0.00 4.02
1274 1406 3.440522 GCTTTTCCACTGACCACCTATTC 59.559 47.826 0.00 0.00 0.00 1.75
1279 1411 3.769844 TCCACTGACCACCTATTCTTCTC 59.230 47.826 0.00 0.00 0.00 2.87
1282 1414 5.513094 CCACTGACCACCTATTCTTCTCAAA 60.513 44.000 0.00 0.00 0.00 2.69
1293 1425 8.160106 ACCTATTCTTCTCAAAACTCAATCACT 58.840 33.333 0.00 0.00 0.00 3.41
1307 1439 9.659830 AAACTCAATCACTATTTGTTTACGTTC 57.340 29.630 0.00 0.00 32.20 3.95
1455 1587 8.980481 AGGTGGAGATAACATAAAAGTATTGG 57.020 34.615 0.00 0.00 0.00 3.16
1456 1588 8.557450 AGGTGGAGATAACATAAAAGTATTGGT 58.443 33.333 0.00 0.00 0.00 3.67
1457 1589 9.185680 GGTGGAGATAACATAAAAGTATTGGTT 57.814 33.333 0.00 0.00 0.00 3.67
1540 1672 9.651913 AATCATTATGTCGCCTTTTAATGTTTT 57.348 25.926 0.00 0.00 34.91 2.43
1562 1694 0.112412 AGGGGTTTGTTAGTGCTGGG 59.888 55.000 0.00 0.00 0.00 4.45
1710 1842 3.188460 TCGTTCTTTTGAGGTTAGCATGC 59.812 43.478 10.51 10.51 0.00 4.06
1857 1992 3.282021 CTTTGATCCATTCCGTCACCAT 58.718 45.455 0.00 0.00 0.00 3.55
1880 2023 9.007901 CCATGTCTTTACTTTCTTCTGAATCTT 57.992 33.333 0.00 0.00 31.56 2.40
1900 2043 8.425577 AATCTTTTAATGACTGTCGGTAGATG 57.574 34.615 2.98 0.00 0.00 2.90
1914 2057 4.275196 TCGGTAGATGAAGTCCGATAAGTG 59.725 45.833 0.97 0.00 45.49 3.16
1918 2061 5.860941 AGATGAAGTCCGATAAGTGACAT 57.139 39.130 0.00 0.00 33.89 3.06
1930 2073 6.873605 CCGATAAGTGACATTGGCAAGATATA 59.126 38.462 5.96 0.00 0.00 0.86
1931 2074 7.550551 CCGATAAGTGACATTGGCAAGATATAT 59.449 37.037 5.96 0.00 0.00 0.86
1941 2084 8.408601 ACATTGGCAAGATATATGAAGTTTGAC 58.591 33.333 5.96 0.00 0.00 3.18
1961 2104 7.747809 TTGACATATGGTATCATATAGCCCA 57.252 36.000 8.19 2.36 42.81 5.36
1972 2115 5.276694 TCATATAGCCCAGTAGAGGACAT 57.723 43.478 0.00 0.00 0.00 3.06
1985 2128 3.489355 AGAGGACATTGTTCATTGTGCA 58.511 40.909 16.79 0.00 36.73 4.57
1988 2131 5.021033 AGGACATTGTTCATTGTGCAAAA 57.979 34.783 16.79 0.00 36.73 2.44
2081 2233 4.423625 ACCATAGGTAAAGGAGTGCATC 57.576 45.455 0.00 0.00 32.11 3.91
2112 2264 7.928706 GGCTCAGTATAGTGTTCATTACAATCT 59.071 37.037 7.44 0.00 38.80 2.40
2262 2414 8.830580 CATGGTAAGAATGTTTTATCTGTCGAT 58.169 33.333 0.00 0.00 0.00 3.59
2264 2416 7.126398 GGTAAGAATGTTTTATCTGTCGATGC 58.874 38.462 0.00 0.00 0.00 3.91
2268 2420 7.467623 AGAATGTTTTATCTGTCGATGCTTTC 58.532 34.615 0.00 0.00 0.00 2.62
2269 2421 6.992063 ATGTTTTATCTGTCGATGCTTTCT 57.008 33.333 0.00 0.00 0.00 2.52
2280 2434 7.604164 TCTGTCGATGCTTTCTTTCTTTTATCT 59.396 33.333 0.00 0.00 0.00 1.98
2384 2539 7.540299 CAAAAACGTCTTATATTAAGGGGCAA 58.460 34.615 0.00 0.00 0.00 4.52
2395 2550 4.831674 TTAAGGGGCAAAGGTAGTACTC 57.168 45.455 0.00 0.00 0.00 2.59
2396 2551 2.337359 AGGGGCAAAGGTAGTACTCA 57.663 50.000 0.00 0.00 0.00 3.41
2535 2693 4.688879 CGGATGCAGTTAGTTTTCAGTACA 59.311 41.667 0.00 0.00 0.00 2.90
2582 2740 7.821359 TCATTGAATCTCTGGAAACTAGTCAAG 59.179 37.037 0.00 0.00 0.00 3.02
2599 2757 7.819900 ACTAGTCAAGTGAAATTACATCCTCAC 59.180 37.037 0.00 0.00 36.93 3.51
2614 2772 0.954452 CTCACTGGTTTGCCTGGTTC 59.046 55.000 0.00 0.00 37.95 3.62
2665 2824 0.325933 TGGCCAAGAGTGTGATGGAG 59.674 55.000 0.61 0.00 36.27 3.86
2705 2864 2.436417 TCATACAAAGGCCTGCAAGTC 58.564 47.619 5.69 0.00 0.00 3.01
2741 2900 0.107017 CATCCAAAGCCAGGGACGAT 60.107 55.000 0.00 0.00 35.67 3.73
2786 2945 5.932303 TGTACTGAAGAAACAGGTCTATTGC 59.068 40.000 0.00 0.00 41.59 3.56
2902 3065 3.868757 TGTATGTGACTGCTACACCTC 57.131 47.619 0.00 0.00 37.45 3.85
2904 3067 3.444034 TGTATGTGACTGCTACACCTCTC 59.556 47.826 0.00 0.00 37.45 3.20
2921 3084 2.614057 CTCTCTGGTTCGCACACTTTTT 59.386 45.455 0.00 0.00 0.00 1.94
3053 3474 6.909550 AAACAAATGGGCTCACAATACTTA 57.090 33.333 0.00 0.00 0.00 2.24
3082 3503 9.331282 ACTGTCATTGGATTTCTAACTATTAGC 57.669 33.333 0.00 0.00 33.23 3.09
3083 3504 9.330063 CTGTCATTGGATTTCTAACTATTAGCA 57.670 33.333 0.00 0.00 33.23 3.49
3084 3505 9.109393 TGTCATTGGATTTCTAACTATTAGCAC 57.891 33.333 0.00 0.00 33.23 4.40
3114 3654 6.310224 GCTGTTTTACAAACAACATGTCTTGT 59.690 34.615 19.05 19.05 41.53 3.16
3129 3669 6.417635 ACATGTCTTGTAAAGTTTCATTTGCG 59.582 34.615 0.00 0.00 46.34 4.85
3141 3682 3.671008 TCATTTGCGTGTAGTGTACCT 57.329 42.857 0.00 0.00 0.00 3.08
3154 3695 6.759827 GTGTAGTGTACCTTTCACAAAAGAGA 59.240 38.462 0.00 0.00 43.90 3.10
3173 3714 5.685728 AGAGAAGCAATAAATACCCAGGAC 58.314 41.667 0.00 0.00 0.00 3.85
3213 3781 9.479549 AAACAGAGTTTACCATCCATGATATTT 57.520 29.630 0.00 0.00 0.00 1.40
3215 3783 7.442364 ACAGAGTTTACCATCCATGATATTTCG 59.558 37.037 0.00 0.00 0.00 3.46
3224 3792 7.147846 ACCATCCATGATATTTCGAAGCTTTTT 60.148 33.333 0.00 0.00 0.00 1.94
3230 3798 7.094508 TGATATTTCGAAGCTTTTTGGCATA 57.905 32.000 0.00 0.00 34.17 3.14
3231 3799 7.542890 TGATATTTCGAAGCTTTTTGGCATAA 58.457 30.769 0.00 0.00 34.17 1.90
3242 3812 5.238214 GCTTTTTGGCATAATGGACACAAAA 59.762 36.000 0.00 0.00 36.41 2.44
3243 3813 6.238593 GCTTTTTGGCATAATGGACACAAAAA 60.239 34.615 11.18 11.18 42.17 1.94
3244 3814 7.521910 GCTTTTTGGCATAATGGACACAAAAAT 60.522 33.333 11.85 0.00 42.90 1.82
3248 3818 5.011431 TGGCATAATGGACACAAAAATCACA 59.989 36.000 0.00 0.00 0.00 3.58
3272 3842 2.367894 CCATGAGGCTCAGCTAGATCAA 59.632 50.000 23.24 0.00 0.00 2.57
3323 3893 2.449518 TGCCCCTGGACCAAGACA 60.450 61.111 0.00 0.00 0.00 3.41
3343 3915 9.474920 CAAGACATGATAGAATAAGAGAGAACC 57.525 37.037 0.00 0.00 0.00 3.62
3387 3959 4.333649 ACAAACTTCATAGCACATCATCGG 59.666 41.667 0.00 0.00 0.00 4.18
3644 4219 1.838077 GTGCCCTAGACCCTGTTGTAT 59.162 52.381 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.348967 GACATTCGCCACGTGTCGC 62.349 63.158 15.09 10.47 33.73 5.19
8 9 1.733041 AGACATTCGCCACGTGTCG 60.733 57.895 13.61 13.61 45.17 4.35
9 10 0.666274 TCAGACATTCGCCACGTGTC 60.666 55.000 15.65 0.00 41.88 3.67
11 12 0.388520 TCTCAGACATTCGCCACGTG 60.389 55.000 9.08 9.08 0.00 4.49
12 13 0.317160 TTCTCAGACATTCGCCACGT 59.683 50.000 0.00 0.00 0.00 4.49
13 14 1.645034 ATTCTCAGACATTCGCCACG 58.355 50.000 0.00 0.00 0.00 4.94
14 15 2.535984 CGTATTCTCAGACATTCGCCAC 59.464 50.000 0.00 0.00 0.00 5.01
15 16 2.165641 ACGTATTCTCAGACATTCGCCA 59.834 45.455 0.00 0.00 0.00 5.69
16 17 2.789893 GACGTATTCTCAGACATTCGCC 59.210 50.000 0.00 0.00 0.00 5.54
17 18 3.435566 TGACGTATTCTCAGACATTCGC 58.564 45.455 0.00 0.00 0.00 4.70
18 19 5.003872 CACTTGACGTATTCTCAGACATTCG 59.996 44.000 0.00 0.00 0.00 3.34
19 20 6.034044 GTCACTTGACGTATTCTCAGACATTC 59.966 42.308 0.00 0.00 35.12 2.67
20 21 5.864474 GTCACTTGACGTATTCTCAGACATT 59.136 40.000 0.00 0.00 35.12 2.71
21 22 5.403246 GTCACTTGACGTATTCTCAGACAT 58.597 41.667 0.00 0.00 35.12 3.06
22 23 4.795268 GTCACTTGACGTATTCTCAGACA 58.205 43.478 0.00 0.00 35.12 3.41
45 46 2.029904 GAAGCCTCGCAACGATCAGC 62.030 60.000 0.00 0.00 34.61 4.26
46 47 1.424493 GGAAGCCTCGCAACGATCAG 61.424 60.000 0.00 0.00 34.61 2.90
47 48 1.447838 GGAAGCCTCGCAACGATCA 60.448 57.895 0.00 0.00 34.61 2.92
48 49 2.517450 CGGAAGCCTCGCAACGATC 61.517 63.158 0.00 0.00 34.61 3.69
49 50 2.501223 TTCGGAAGCCTCGCAACGAT 62.501 55.000 0.00 0.00 34.61 3.73
50 51 3.215597 TTCGGAAGCCTCGCAACGA 62.216 57.895 0.00 0.00 0.00 3.85
51 52 2.730672 CTTCGGAAGCCTCGCAACG 61.731 63.158 4.57 0.00 0.00 4.10
52 53 2.391389 CCTTCGGAAGCCTCGCAAC 61.391 63.158 12.29 0.00 0.00 4.17
53 54 2.047274 CCTTCGGAAGCCTCGCAA 60.047 61.111 12.29 0.00 0.00 4.85
54 55 2.994995 TCCTTCGGAAGCCTCGCA 60.995 61.111 12.29 0.00 0.00 5.10
55 56 2.202810 CTCCTTCGGAAGCCTCGC 60.203 66.667 12.29 0.00 0.00 5.03
56 57 2.202810 GCTCCTTCGGAAGCCTCG 60.203 66.667 12.29 0.00 0.00 4.63
57 58 2.202810 CGCTCCTTCGGAAGCCTC 60.203 66.667 12.29 2.39 0.00 4.70
58 59 4.459089 GCGCTCCTTCGGAAGCCT 62.459 66.667 12.29 0.00 32.03 4.58
59 60 4.459089 AGCGCTCCTTCGGAAGCC 62.459 66.667 2.64 2.30 36.52 4.35
60 61 2.888051 GAGCGCTCCTTCGGAAGC 60.888 66.667 27.22 1.06 36.25 3.86
61 62 2.580867 CGAGCGCTCCTTCGGAAG 60.581 66.667 30.66 10.96 0.00 3.46
62 63 1.588824 TAACGAGCGCTCCTTCGGAA 61.589 55.000 30.66 10.15 0.00 4.30
63 64 1.588824 TTAACGAGCGCTCCTTCGGA 61.589 55.000 30.66 12.50 0.00 4.55
64 65 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
65 66 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
66 67 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
67 68 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
68 69 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
69 70 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
70 71 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
71 72 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
72 73 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
73 74 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
74 75 2.269172 GGGAGCAACTAGTTAACGAGC 58.731 52.381 14.82 7.28 0.00 5.03
75 76 3.587797 TGGGAGCAACTAGTTAACGAG 57.412 47.619 13.50 13.50 0.00 4.18
76 77 3.767673 AGATGGGAGCAACTAGTTAACGA 59.232 43.478 8.04 0.00 0.00 3.85
77 78 4.113354 GAGATGGGAGCAACTAGTTAACG 58.887 47.826 8.04 0.00 0.00 3.18
78 79 5.086104 TGAGATGGGAGCAACTAGTTAAC 57.914 43.478 8.04 3.72 0.00 2.01
79 80 5.189736 ACATGAGATGGGAGCAACTAGTTAA 59.810 40.000 8.04 0.00 33.60 2.01
80 81 4.716784 ACATGAGATGGGAGCAACTAGTTA 59.283 41.667 8.04 0.00 33.60 2.24
81 82 3.521126 ACATGAGATGGGAGCAACTAGTT 59.479 43.478 1.12 1.12 33.60 2.24
82 83 3.110705 ACATGAGATGGGAGCAACTAGT 58.889 45.455 0.00 0.00 33.60 2.57
83 84 3.494048 GGACATGAGATGGGAGCAACTAG 60.494 52.174 0.00 0.00 33.60 2.57
84 85 2.435805 GGACATGAGATGGGAGCAACTA 59.564 50.000 0.00 0.00 33.60 2.24
85 86 1.211457 GGACATGAGATGGGAGCAACT 59.789 52.381 0.00 0.00 33.60 3.16
86 87 1.673168 GGACATGAGATGGGAGCAAC 58.327 55.000 0.00 0.00 33.60 4.17
87 88 0.548031 GGGACATGAGATGGGAGCAA 59.452 55.000 0.00 0.00 33.60 3.91
88 89 0.326904 AGGGACATGAGATGGGAGCA 60.327 55.000 0.00 0.00 33.60 4.26
89 90 1.722034 TAGGGACATGAGATGGGAGC 58.278 55.000 0.00 0.00 33.60 4.70
90 91 4.778213 TTTTAGGGACATGAGATGGGAG 57.222 45.455 0.00 0.00 33.60 4.30
111 112 3.166560 AGCCCATGAGAAGCTCTTTTT 57.833 42.857 0.00 0.00 28.40 1.94
112 113 2.895242 AGCCCATGAGAAGCTCTTTT 57.105 45.000 0.00 0.00 28.40 2.27
113 114 2.419297 CGTAGCCCATGAGAAGCTCTTT 60.419 50.000 0.00 0.00 38.06 2.52
114 115 1.137872 CGTAGCCCATGAGAAGCTCTT 59.862 52.381 0.00 0.00 38.06 2.85
115 116 0.749649 CGTAGCCCATGAGAAGCTCT 59.250 55.000 0.00 0.00 38.06 4.09
116 117 0.747255 TCGTAGCCCATGAGAAGCTC 59.253 55.000 0.00 0.00 38.06 4.09
117 118 1.134670 GTTCGTAGCCCATGAGAAGCT 60.135 52.381 0.00 0.00 40.66 3.74
118 119 1.291132 GTTCGTAGCCCATGAGAAGC 58.709 55.000 0.00 0.00 0.00 3.86
119 120 1.560923 CGTTCGTAGCCCATGAGAAG 58.439 55.000 0.00 0.00 0.00 2.85
120 121 0.174845 CCGTTCGTAGCCCATGAGAA 59.825 55.000 0.00 0.00 0.00 2.87
125 126 4.171103 GGCCCGTTCGTAGCCCAT 62.171 66.667 10.90 0.00 41.00 4.00
351 354 2.587194 CTGGCCTGAGAATCCGCG 60.587 66.667 3.32 0.00 30.81 6.46
494 505 1.281867 CCCCAGACAGCCAAATACTCA 59.718 52.381 0.00 0.00 0.00 3.41
509 521 2.171003 GAACAGAAATCCCAACCCCAG 58.829 52.381 0.00 0.00 0.00 4.45
586 618 1.606668 TGAAAGGTCCACGCACAAATC 59.393 47.619 0.00 0.00 0.00 2.17
599 631 5.431765 CATAACCAGTAGCTCATGAAAGGT 58.568 41.667 0.00 0.00 0.00 3.50
602 634 4.842574 TGCATAACCAGTAGCTCATGAAA 58.157 39.130 0.00 0.00 0.00 2.69
632 697 7.875041 ACACCTAGTGATTGCTTAGCATTATAG 59.125 37.037 8.05 7.84 36.22 1.31
695 819 6.992063 ATAATATGAATTGCCCTGTCGATC 57.008 37.500 0.00 0.00 0.00 3.69
699 823 7.667043 TCGTAATAATATGAATTGCCCTGTC 57.333 36.000 0.00 0.00 0.00 3.51
703 827 7.698130 GCTTCATCGTAATAATATGAATTGCCC 59.302 37.037 0.00 0.00 38.55 5.36
715 839 9.678941 CTCTAACATACTGCTTCATCGTAATAA 57.321 33.333 0.00 0.00 0.00 1.40
721 845 5.344066 ACACTCTAACATACTGCTTCATCG 58.656 41.667 0.00 0.00 0.00 3.84
726 850 4.641396 TGCAACACTCTAACATACTGCTT 58.359 39.130 0.00 0.00 0.00 3.91
766 890 9.543018 CTTCCAACGATTACTGAATTTAAAGTC 57.457 33.333 8.68 8.68 0.00 3.01
782 906 4.717280 ACCCTCTCTATTTCTTCCAACGAT 59.283 41.667 0.00 0.00 0.00 3.73
783 907 4.094476 ACCCTCTCTATTTCTTCCAACGA 58.906 43.478 0.00 0.00 0.00 3.85
784 908 4.473477 ACCCTCTCTATTTCTTCCAACG 57.527 45.455 0.00 0.00 0.00 4.10
804 929 8.535690 AAATAACTGCTAGTACTCACAGAAAC 57.464 34.615 24.46 0.00 34.25 2.78
806 931 8.148351 ACAAAATAACTGCTAGTACTCACAGAA 58.852 33.333 24.46 15.26 34.25 3.02
808 933 7.891183 ACAAAATAACTGCTAGTACTCACAG 57.109 36.000 18.75 18.75 36.22 3.66
813 938 7.504924 TTGCAACAAAATAACTGCTAGTACT 57.495 32.000 0.00 0.00 35.78 2.73
817 942 7.599998 AGGAAATTGCAACAAAATAACTGCTAG 59.400 33.333 0.00 0.00 35.78 3.42
820 945 6.544038 AGGAAATTGCAACAAAATAACTGC 57.456 33.333 0.00 0.00 35.32 4.40
821 946 8.087750 TCCTAGGAAATTGCAACAAAATAACTG 58.912 33.333 9.71 0.00 0.00 3.16
822 947 8.189119 TCCTAGGAAATTGCAACAAAATAACT 57.811 30.769 9.71 0.00 0.00 2.24
823 948 8.825667 TTCCTAGGAAATTGCAACAAAATAAC 57.174 30.769 22.27 0.00 0.00 1.89
824 949 8.865090 TCTTCCTAGGAAATTGCAACAAAATAA 58.135 29.630 24.31 0.00 33.34 1.40
825 950 8.415950 TCTTCCTAGGAAATTGCAACAAAATA 57.584 30.769 24.31 0.00 33.34 1.40
826 951 7.301868 TCTTCCTAGGAAATTGCAACAAAAT 57.698 32.000 24.31 0.00 33.34 1.82
827 952 6.723298 TCTTCCTAGGAAATTGCAACAAAA 57.277 33.333 24.31 0.00 33.34 2.44
828 953 6.916360 ATCTTCCTAGGAAATTGCAACAAA 57.084 33.333 24.31 0.00 33.34 2.83
829 954 9.342308 CTATATCTTCCTAGGAAATTGCAACAA 57.658 33.333 24.31 0.00 33.34 2.83
855 987 1.271379 TGCTCAGGGCTCCAAAACTAC 60.271 52.381 0.00 0.00 42.39 2.73
874 1006 0.321122 GGTCAGCCAAGAGACAGGTG 60.321 60.000 0.00 0.00 36.50 4.00
875 1007 0.764369 TGGTCAGCCAAGAGACAGGT 60.764 55.000 0.00 0.00 42.83 4.00
994 1126 3.457263 TAGCGTCGGCATGGCTGA 61.457 61.111 18.09 13.11 42.08 4.26
1075 1207 3.488090 GCTACACGAACCAGCGGC 61.488 66.667 0.00 0.00 35.12 6.53
1149 1281 2.071778 AGCTGGAAACAATGTGTGGT 57.928 45.000 0.00 0.00 42.06 4.16
1164 1296 6.223852 TCTGGTAAAGTTAACTCTGAAGCTG 58.776 40.000 8.95 8.41 0.00 4.24
1267 1399 8.160106 AGTGATTGAGTTTTGAGAAGAATAGGT 58.840 33.333 0.00 0.00 0.00 3.08
1274 1406 9.956720 AACAAATAGTGATTGAGTTTTGAGAAG 57.043 29.630 0.00 0.00 0.00 2.85
1279 1411 9.445786 ACGTAAACAAATAGTGATTGAGTTTTG 57.554 29.630 0.00 0.00 36.39 2.44
1282 1414 8.007716 CGAACGTAAACAAATAGTGATTGAGTT 58.992 33.333 0.00 0.00 31.03 3.01
1307 1439 1.154488 CGCCCAACACAATCGTTCG 60.154 57.895 0.00 0.00 0.00 3.95
1312 1444 2.126346 GCTGCGCCCAACACAATC 60.126 61.111 4.18 0.00 0.00 2.67
1397 1529 8.668353 TCAATGACATTCTTATACTGCTTGAAC 58.332 33.333 0.00 0.00 0.00 3.18
1455 1587 5.560966 TCTCAACAAGAACCAACAAGAAC 57.439 39.130 0.00 0.00 0.00 3.01
1456 1588 6.603201 AGAATCTCAACAAGAACCAACAAGAA 59.397 34.615 0.00 0.00 37.61 2.52
1457 1589 6.122277 AGAATCTCAACAAGAACCAACAAGA 58.878 36.000 0.00 0.00 37.61 3.02
1458 1590 6.382869 AGAATCTCAACAAGAACCAACAAG 57.617 37.500 0.00 0.00 37.61 3.16
1459 1591 6.376864 TGAAGAATCTCAACAAGAACCAACAA 59.623 34.615 0.00 0.00 37.61 2.83
1460 1592 5.885352 TGAAGAATCTCAACAAGAACCAACA 59.115 36.000 0.00 0.00 37.61 3.33
1461 1593 6.038714 AGTGAAGAATCTCAACAAGAACCAAC 59.961 38.462 0.00 0.00 37.61 3.77
1462 1594 6.038603 CAGTGAAGAATCTCAACAAGAACCAA 59.961 38.462 0.00 0.00 37.61 3.67
1463 1595 5.528690 CAGTGAAGAATCTCAACAAGAACCA 59.471 40.000 0.00 0.00 37.61 3.67
1464 1596 5.049129 CCAGTGAAGAATCTCAACAAGAACC 60.049 44.000 0.00 0.00 37.61 3.62
1465 1597 5.529060 ACCAGTGAAGAATCTCAACAAGAAC 59.471 40.000 0.00 0.00 37.61 3.01
1540 1672 0.184933 AGCACTAACAAACCCCTGCA 59.815 50.000 0.00 0.00 0.00 4.41
1799 1934 8.403236 GGTTTGAGTGTAAAACTGTGAATACTT 58.597 33.333 0.00 0.00 40.07 2.24
1880 2023 6.931838 ACTTCATCTACCGACAGTCATTAAA 58.068 36.000 0.41 0.00 0.00 1.52
1900 2043 3.309954 GCCAATGTCACTTATCGGACTTC 59.690 47.826 0.00 0.00 35.11 3.01
1914 2057 8.623903 TCAAACTTCATATATCTTGCCAATGTC 58.376 33.333 0.00 0.00 0.00 3.06
1918 2061 7.936496 TGTCAAACTTCATATATCTTGCCAA 57.064 32.000 0.00 0.00 0.00 4.52
1941 2084 8.712228 TCTACTGGGCTATATGATACCATATG 57.288 38.462 0.00 0.00 43.70 1.78
1961 2104 4.697352 GCACAATGAACAATGTCCTCTACT 59.303 41.667 0.00 0.00 0.00 2.57
1972 2115 4.213564 AGGGTTTTTGCACAATGAACAA 57.786 36.364 10.41 0.00 0.00 2.83
1985 2128 3.746492 CGAAGATCTCGTCAAGGGTTTTT 59.254 43.478 0.00 0.00 42.89 1.94
1988 2131 1.204941 CCGAAGATCTCGTCAAGGGTT 59.795 52.381 0.00 0.00 46.65 4.11
2011 2154 4.755123 ACTTGAGACGAATGGAAACGAAAT 59.245 37.500 0.00 0.00 0.00 2.17
2052 2195 7.338449 GCACTCCTTTACCTATGGTTAATGAAA 59.662 37.037 0.00 0.00 37.09 2.69
2053 2196 6.826741 GCACTCCTTTACCTATGGTTAATGAA 59.173 38.462 0.00 0.00 37.09 2.57
2054 2197 6.069905 TGCACTCCTTTACCTATGGTTAATGA 60.070 38.462 0.00 0.00 37.09 2.57
2055 2198 6.119536 TGCACTCCTTTACCTATGGTTAATG 58.880 40.000 0.00 0.00 37.09 1.90
2056 2199 6.321821 TGCACTCCTTTACCTATGGTTAAT 57.678 37.500 0.00 0.00 37.09 1.40
2057 2200 5.765576 TGCACTCCTTTACCTATGGTTAA 57.234 39.130 0.00 0.00 37.09 2.01
2058 2201 5.163237 GGATGCACTCCTTTACCTATGGTTA 60.163 44.000 7.65 0.00 41.29 2.85
2059 2202 4.385310 GGATGCACTCCTTTACCTATGGTT 60.385 45.833 7.65 0.00 41.29 3.67
2060 2203 3.136626 GGATGCACTCCTTTACCTATGGT 59.863 47.826 7.65 0.00 41.29 3.55
2061 2204 3.744660 GGATGCACTCCTTTACCTATGG 58.255 50.000 7.65 0.00 41.29 2.74
2295 2449 9.398538 GGACAGAGGGAGTAGTATATAATACTG 57.601 40.741 23.67 13.28 37.24 2.74
2296 2450 8.559175 GGGACAGAGGGAGTAGTATATAATACT 58.441 40.741 19.91 19.91 39.50 2.12
2297 2451 8.559175 AGGGACAGAGGGAGTAGTATATAATAC 58.441 40.741 11.52 11.52 0.00 1.89
2298 2452 8.712168 AGGGACAGAGGGAGTAGTATATAATA 57.288 38.462 0.00 0.00 0.00 0.98
2299 2453 7.606892 AGGGACAGAGGGAGTAGTATATAAT 57.393 40.000 0.00 0.00 0.00 1.28
2308 2462 8.065385 TCTTATATTAAGGGACAGAGGGAGTA 57.935 38.462 0.00 0.00 0.00 2.59
2395 2550 3.242091 CGCGTTGGATTTGATCAGTAGTG 60.242 47.826 0.00 0.00 0.00 2.74
2396 2551 2.930040 CGCGTTGGATTTGATCAGTAGT 59.070 45.455 0.00 0.00 0.00 2.73
2535 2693 3.887621 TTGCTGCTACGAACCTCTAAT 57.112 42.857 0.00 0.00 0.00 1.73
2582 2740 6.381801 CAAACCAGTGAGGATGTAATTTCAC 58.618 40.000 0.00 0.00 39.81 3.18
2599 2757 1.402787 ACAAGAACCAGGCAAACCAG 58.597 50.000 0.00 0.00 39.06 4.00
2614 2772 6.085555 TGACTACCTACAGAGTTGAACAAG 57.914 41.667 0.00 0.00 0.00 3.16
2665 2824 4.139786 TGATCATATTGCTTGCTCTTCCC 58.860 43.478 0.00 0.00 0.00 3.97
2705 2864 2.292267 GATGTGGCATGGGTTCTGTAG 58.708 52.381 0.00 0.00 0.00 2.74
2921 3084 3.468770 TGTCTAGCAAACTAAACGGCAA 58.531 40.909 0.00 0.00 0.00 4.52
2922 3085 3.114668 TGTCTAGCAAACTAAACGGCA 57.885 42.857 0.00 0.00 0.00 5.69
3041 3462 8.251026 TCCAATGACAGTAGTAAGTATTGTGAG 58.749 37.037 0.00 0.00 31.97 3.51
3082 3503 5.795939 TGTTGTTTGTAAAACAGCTAACGTG 59.204 36.000 16.95 0.00 33.38 4.49
3083 3504 5.940595 TGTTGTTTGTAAAACAGCTAACGT 58.059 33.333 16.95 0.00 33.38 3.99
3084 3505 6.470877 ACATGTTGTTTGTAAAACAGCTAACG 59.529 34.615 16.95 8.15 39.50 3.18
3114 3654 6.366315 ACACTACACGCAAATGAAACTTTA 57.634 33.333 0.00 0.00 0.00 1.85
3129 3669 6.759827 TCTCTTTTGTGAAAGGTACACTACAC 59.240 38.462 0.00 5.26 42.05 2.90
3141 3682 9.691362 GGTATTTATTGCTTCTCTTTTGTGAAA 57.309 29.630 0.00 0.00 32.45 2.69
3154 3695 7.180051 TCAAAATGTCCTGGGTATTTATTGCTT 59.820 33.333 8.71 0.00 0.00 3.91
3173 3714 9.221775 GTAAACTCTGTTTACAGTGTCAAAATG 57.778 33.333 21.30 0.00 46.26 2.32
3213 3781 3.761218 TCCATTATGCCAAAAAGCTTCGA 59.239 39.130 0.00 0.00 0.00 3.71
3215 3783 4.627035 GTGTCCATTATGCCAAAAAGCTTC 59.373 41.667 0.00 0.00 0.00 3.86
3224 3792 5.011431 TGTGATTTTTGTGTCCATTATGCCA 59.989 36.000 0.00 0.00 0.00 4.92
3230 3798 3.070878 GGGGTGTGATTTTTGTGTCCATT 59.929 43.478 0.00 0.00 0.00 3.16
3231 3799 2.632512 GGGGTGTGATTTTTGTGTCCAT 59.367 45.455 0.00 0.00 0.00 3.41
3242 3812 2.402238 AGCCTCATGGGGTGTGATT 58.598 52.632 14.66 0.00 45.16 2.57
3243 3813 4.176404 AGCCTCATGGGGTGTGAT 57.824 55.556 14.66 0.00 45.16 3.06
3272 3842 1.207593 GCTTGCGATGAAACTGCGT 59.792 52.632 0.00 0.00 0.00 5.24
3284 3854 0.031178 GAATGGGCTAATGGCTTGCG 59.969 55.000 0.00 0.00 41.46 4.85
3323 3893 9.432982 AGTTCTGGTTCTCTCTTATTCTATCAT 57.567 33.333 0.00 0.00 0.00 2.45
3352 3924 8.052748 TGCTATGAAGTTTGTAAATCCTGGTAT 58.947 33.333 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.