Multiple sequence alignment - TraesCS5A01G382000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G382000 chr5A 100.000 2924 0 0 1 2924 580202014 580199091 0.000000e+00 5400
1 TraesCS5A01G382000 chr5A 81.880 1181 183 23 702 1864 579325762 579326929 0.000000e+00 966
2 TraesCS5A01G382000 chr5A 83.861 948 136 11 1016 1951 580212751 580211809 0.000000e+00 887
3 TraesCS5A01G382000 chr5A 78.261 391 56 14 2169 2553 579216149 579216516 1.050000e-54 224
4 TraesCS5A01G382000 chr5A 80.719 306 29 18 2317 2596 579322204 579322505 8.210000e-51 211
5 TraesCS5A01G382000 chr5B 93.492 2274 103 15 461 2710 565509407 565507155 0.000000e+00 3338
6 TraesCS5A01G382000 chr5B 84.155 1319 185 14 650 1951 565512637 565511326 0.000000e+00 1256
7 TraesCS5A01G382000 chr5B 82.640 1250 197 16 703 1944 565687281 565686044 0.000000e+00 1088
8 TraesCS5A01G382000 chr5B 80.736 1277 207 27 702 1953 565502830 565501568 0.000000e+00 959
9 TraesCS5A01G382000 chr5B 81.186 1180 199 14 702 1877 565537837 565536677 0.000000e+00 928
10 TraesCS5A01G382000 chr5B 80.842 475 43 21 1979 2433 565501410 565500964 2.170000e-86 329
11 TraesCS5A01G382000 chr5B 80.441 363 47 14 2051 2409 565511149 565510807 3.740000e-64 255
12 TraesCS5A01G382000 chr5B 88.667 150 17 0 2775 2924 565507166 565507017 1.790000e-42 183
13 TraesCS5A01G382000 chr5D 93.844 1527 59 11 883 2395 460069138 460067633 0.000000e+00 2266
14 TraesCS5A01G382000 chr5D 86.978 1198 150 3 689 1883 460073102 460071908 0.000000e+00 1343
15 TraesCS5A01G382000 chr5D 92.391 552 36 5 260 808 460069691 460069143 0.000000e+00 782
16 TraesCS5A01G382000 chr5D 81.363 499 77 9 2053 2539 460071684 460071190 2.730000e-105 392
17 TraesCS5A01G382000 chr5D 89.151 212 23 0 2713 2924 460067575 460067364 6.210000e-67 265
18 TraesCS5A01G382000 chr5D 81.046 306 28 15 2317 2596 460064636 460064335 1.760000e-52 217
19 TraesCS5A01G382000 chr4B 88.259 247 27 2 3 249 2700729 2700973 7.920000e-76 294
20 TraesCS5A01G382000 chr1A 83.258 221 33 4 32 249 186480990 186480771 1.780000e-47 200
21 TraesCS5A01G382000 chr6B 81.423 253 35 11 1 249 5280477 5280721 2.300000e-46 196
22 TraesCS5A01G382000 chr7A 81.176 255 33 15 4 249 580379818 580380066 1.070000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G382000 chr5A 580199091 580202014 2923 True 5400.0 5400 100.000000 1 2924 1 chr5A.!!$R1 2923
1 TraesCS5A01G382000 chr5A 580211809 580212751 942 True 887.0 887 83.861000 1016 1951 1 chr5A.!!$R2 935
2 TraesCS5A01G382000 chr5A 579322204 579326929 4725 False 588.5 966 81.299500 702 2596 2 chr5A.!!$F2 1894
3 TraesCS5A01G382000 chr5B 565507017 565512637 5620 True 1258.0 3338 86.688750 461 2924 4 chr5B.!!$R4 2463
4 TraesCS5A01G382000 chr5B 565686044 565687281 1237 True 1088.0 1088 82.640000 703 1944 1 chr5B.!!$R2 1241
5 TraesCS5A01G382000 chr5B 565536677 565537837 1160 True 928.0 928 81.186000 702 1877 1 chr5B.!!$R1 1175
6 TraesCS5A01G382000 chr5B 565500964 565502830 1866 True 644.0 959 80.789000 702 2433 2 chr5B.!!$R3 1731
7 TraesCS5A01G382000 chr5D 460064335 460073102 8767 True 877.5 2266 87.462167 260 2924 6 chr5D.!!$R1 2664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.03213 CTATGTAGCATGGACGGCGT 59.968 55.0 14.65 14.65 36.08 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 9340 0.322456 GCAGCCACTACCATGTCCAA 60.322 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.247380 GGAGGAGCCGCATCTGGG 62.247 72.222 0.00 0.00 0.00 4.45
66 67 4.088762 CCGCCGCACACACATGTC 62.089 66.667 0.00 0.00 36.72 3.06
68 69 3.041351 GCCGCACACACATGTCGA 61.041 61.111 0.00 0.00 36.72 4.20
69 70 3.015293 GCCGCACACACATGTCGAG 62.015 63.158 0.00 0.00 36.72 4.04
70 71 2.471607 CGCACACACATGTCGAGC 59.528 61.111 0.00 0.00 36.72 5.03
71 72 2.309501 CGCACACACATGTCGAGCA 61.310 57.895 12.62 0.00 36.72 4.26
72 73 1.494628 GCACACACATGTCGAGCAG 59.505 57.895 0.00 0.00 36.72 4.24
75 76 0.037882 ACACACATGTCGAGCAGGAG 60.038 55.000 0.00 2.24 31.55 3.69
76 77 0.244721 CACACATGTCGAGCAGGAGA 59.755 55.000 0.00 0.00 32.48 3.71
78 79 1.135915 ACACATGTCGAGCAGGAGATC 59.864 52.381 0.00 0.00 32.48 2.75
87 88 2.898705 GAGCAGGAGATCGTGATTTGT 58.101 47.619 6.71 0.00 33.92 2.83
88 89 2.863137 GAGCAGGAGATCGTGATTTGTC 59.137 50.000 6.71 0.00 33.92 3.18
89 90 2.499289 AGCAGGAGATCGTGATTTGTCT 59.501 45.455 6.71 0.00 33.92 3.41
90 91 3.701542 AGCAGGAGATCGTGATTTGTCTA 59.298 43.478 6.71 0.00 33.92 2.59
91 92 4.047822 GCAGGAGATCGTGATTTGTCTAG 58.952 47.826 6.71 0.00 33.92 2.43
92 93 4.615949 CAGGAGATCGTGATTTGTCTAGG 58.384 47.826 0.00 0.00 33.92 3.02
93 94 3.639094 AGGAGATCGTGATTTGTCTAGGG 59.361 47.826 0.00 0.00 0.00 3.53
96 97 5.068723 GGAGATCGTGATTTGTCTAGGGTTA 59.931 44.000 0.00 0.00 0.00 2.85
97 98 6.150396 AGATCGTGATTTGTCTAGGGTTAG 57.850 41.667 0.00 0.00 0.00 2.34
98 99 4.730949 TCGTGATTTGTCTAGGGTTAGG 57.269 45.455 0.00 0.00 0.00 2.69
100 101 3.542648 GTGATTTGTCTAGGGTTAGGGC 58.457 50.000 0.00 0.00 0.00 5.19
101 102 2.169769 TGATTTGTCTAGGGTTAGGGCG 59.830 50.000 0.00 0.00 0.00 6.13
102 103 1.648116 TTTGTCTAGGGTTAGGGCGT 58.352 50.000 0.00 0.00 0.00 5.68
103 104 1.648116 TTGTCTAGGGTTAGGGCGTT 58.352 50.000 0.00 0.00 0.00 4.84
104 105 1.648116 TGTCTAGGGTTAGGGCGTTT 58.352 50.000 0.00 0.00 0.00 3.60
106 107 0.906775 TCTAGGGTTAGGGCGTTTGG 59.093 55.000 0.00 0.00 0.00 3.28
108 109 1.003928 CTAGGGTTAGGGCGTTTGGTT 59.996 52.381 0.00 0.00 0.00 3.67
109 110 0.251033 AGGGTTAGGGCGTTTGGTTC 60.251 55.000 0.00 0.00 0.00 3.62
110 111 1.579964 GGGTTAGGGCGTTTGGTTCG 61.580 60.000 0.00 0.00 0.00 3.95
113 114 1.395954 GTTAGGGCGTTTGGTTCGATC 59.604 52.381 0.00 0.00 0.00 3.69
114 115 0.108041 TAGGGCGTTTGGTTCGATCC 60.108 55.000 5.52 5.52 0.00 3.36
116 117 0.958876 GGGCGTTTGGTTCGATCCTT 60.959 55.000 13.55 0.00 0.00 3.36
117 118 0.879090 GGCGTTTGGTTCGATCCTTT 59.121 50.000 13.55 0.00 0.00 3.11
118 119 1.268625 GGCGTTTGGTTCGATCCTTTT 59.731 47.619 13.55 0.00 0.00 2.27
119 120 2.485038 GGCGTTTGGTTCGATCCTTTTA 59.515 45.455 13.55 0.00 0.00 1.52
120 121 3.128068 GGCGTTTGGTTCGATCCTTTTAT 59.872 43.478 13.55 0.00 0.00 1.40
123 124 6.459161 GGCGTTTGGTTCGATCCTTTTATATT 60.459 38.462 13.55 0.00 0.00 1.28
124 125 6.413818 GCGTTTGGTTCGATCCTTTTATATTG 59.586 38.462 13.55 0.00 0.00 1.90
125 126 6.910433 CGTTTGGTTCGATCCTTTTATATTGG 59.090 38.462 13.55 0.00 0.00 3.16
126 127 6.952773 TTGGTTCGATCCTTTTATATTGGG 57.047 37.500 13.55 0.00 0.00 4.12
127 128 4.825085 TGGTTCGATCCTTTTATATTGGGC 59.175 41.667 13.55 0.00 0.00 5.36
131 132 6.633500 TCGATCCTTTTATATTGGGCAAAG 57.367 37.500 0.00 0.00 0.00 2.77
132 133 5.009610 TCGATCCTTTTATATTGGGCAAAGC 59.990 40.000 0.00 0.00 0.00 3.51
133 134 4.647424 TCCTTTTATATTGGGCAAAGCG 57.353 40.909 0.00 0.00 0.00 4.68
134 135 4.020543 TCCTTTTATATTGGGCAAAGCGT 58.979 39.130 0.00 0.00 0.00 5.07
135 136 4.111916 CCTTTTATATTGGGCAAAGCGTG 58.888 43.478 0.00 0.00 0.00 5.34
144 145 2.866028 CAAAGCGTGCAGAGGCTC 59.134 61.111 6.34 6.34 42.53 4.70
145 146 2.359230 AAAGCGTGCAGAGGCTCC 60.359 61.111 11.71 0.00 42.53 4.70
146 147 3.182590 AAAGCGTGCAGAGGCTCCA 62.183 57.895 11.71 0.00 42.53 3.86
149 150 1.153369 GCGTGCAGAGGCTCCATAA 60.153 57.895 11.71 0.00 41.91 1.90
150 151 1.156645 GCGTGCAGAGGCTCCATAAG 61.157 60.000 11.71 1.63 41.91 1.73
152 153 1.406069 CGTGCAGAGGCTCCATAAGTT 60.406 52.381 11.71 0.00 41.91 2.66
153 154 2.012673 GTGCAGAGGCTCCATAAGTTG 58.987 52.381 11.71 1.84 41.91 3.16
154 155 1.065199 TGCAGAGGCTCCATAAGTTGG 60.065 52.381 11.71 0.00 41.92 3.77
171 172 2.397044 TGGATTGGGCCAAAAAGAGT 57.603 45.000 24.97 5.06 34.31 3.24
172 173 3.534357 TGGATTGGGCCAAAAAGAGTA 57.466 42.857 24.97 0.00 34.31 2.59
173 174 3.161866 TGGATTGGGCCAAAAAGAGTAC 58.838 45.455 24.97 6.83 34.31 2.73
174 175 3.161866 GGATTGGGCCAAAAAGAGTACA 58.838 45.455 24.97 0.00 0.00 2.90
175 176 3.576550 GGATTGGGCCAAAAAGAGTACAA 59.423 43.478 24.97 0.00 0.00 2.41
176 177 4.039852 GGATTGGGCCAAAAAGAGTACAAA 59.960 41.667 24.97 0.00 0.00 2.83
177 178 4.394439 TTGGGCCAAAAAGAGTACAAAC 57.606 40.909 18.51 0.00 0.00 2.93
178 179 3.637769 TGGGCCAAAAAGAGTACAAACT 58.362 40.909 2.13 0.00 39.21 2.66
179 180 3.383185 TGGGCCAAAAAGAGTACAAACTG 59.617 43.478 2.13 0.00 35.56 3.16
180 181 3.243737 GGGCCAAAAAGAGTACAAACTGG 60.244 47.826 4.39 0.00 35.56 4.00
184 185 1.892209 AAAGAGTACAAACTGGGCCG 58.108 50.000 0.00 0.00 35.56 6.13
186 187 1.053424 AGAGTACAAACTGGGCCGAA 58.947 50.000 0.00 0.00 35.56 4.30
188 189 2.158726 AGAGTACAAACTGGGCCGAAAA 60.159 45.455 0.00 0.00 35.56 2.29
189 190 2.619646 GAGTACAAACTGGGCCGAAAAA 59.380 45.455 0.00 0.00 35.56 1.94
191 192 3.639561 AGTACAAACTGGGCCGAAAAATT 59.360 39.130 0.00 0.00 33.57 1.82
192 193 3.552132 ACAAACTGGGCCGAAAAATTT 57.448 38.095 0.00 0.00 0.00 1.82
194 195 2.542020 AACTGGGCCGAAAAATTTGG 57.458 45.000 0.00 0.00 0.00 3.28
198 199 3.869187 GCCGAAAAATTTGGCCGG 58.131 55.556 16.92 16.92 43.06 6.13
199 200 1.005512 GCCGAAAAATTTGGCCGGT 60.006 52.632 20.13 0.00 43.06 5.28
200 201 0.244178 GCCGAAAAATTTGGCCGGTA 59.756 50.000 20.13 0.00 43.06 4.02
201 202 1.985334 CCGAAAAATTTGGCCGGTAC 58.015 50.000 1.90 0.00 35.83 3.34
202 203 1.269998 CCGAAAAATTTGGCCGGTACA 59.730 47.619 1.90 0.00 35.83 2.90
203 204 2.591133 CGAAAAATTTGGCCGGTACAG 58.409 47.619 1.90 0.00 0.00 2.74
204 205 2.226912 CGAAAAATTTGGCCGGTACAGA 59.773 45.455 1.90 0.00 0.00 3.41
205 206 3.571571 GAAAAATTTGGCCGGTACAGAC 58.428 45.455 1.90 0.00 0.00 3.51
207 208 2.507407 AATTTGGCCGGTACAGACAT 57.493 45.000 1.90 0.00 0.00 3.06
210 211 3.420300 TTTGGCCGGTACAGACATTTA 57.580 42.857 1.90 0.00 0.00 1.40
211 212 2.389962 TGGCCGGTACAGACATTTAC 57.610 50.000 1.90 0.00 0.00 2.01
212 213 1.065998 TGGCCGGTACAGACATTTACC 60.066 52.381 1.90 0.00 35.32 2.85
216 217 1.660167 GGTACAGACATTTACCGGGC 58.340 55.000 6.32 0.00 0.00 6.13
217 218 1.660167 GTACAGACATTTACCGGGCC 58.340 55.000 6.32 0.00 0.00 5.80
218 219 0.542805 TACAGACATTTACCGGGCCC 59.457 55.000 13.57 13.57 0.00 5.80
219 220 1.301623 CAGACATTTACCGGGCCCA 59.698 57.895 24.92 0.53 0.00 5.36
220 221 0.748005 CAGACATTTACCGGGCCCAG 60.748 60.000 24.92 14.49 0.00 4.45
221 222 1.453197 GACATTTACCGGGCCCAGG 60.453 63.158 24.92 25.27 0.00 4.45
222 223 2.833121 CATTTACCGGGCCCAGGC 60.833 66.667 26.62 0.00 41.06 4.85
223 224 4.499633 ATTTACCGGGCCCAGGCG 62.500 66.667 26.62 11.86 43.06 5.52
231 232 4.554036 GGCCCAGGCGAGATGGAC 62.554 72.222 1.86 0.00 40.51 4.02
233 234 4.227134 CCCAGGCGAGATGGACGG 62.227 72.222 2.84 0.00 40.51 4.79
237 238 0.179073 CAGGCGAGATGGACGGAATT 60.179 55.000 0.00 0.00 0.00 2.17
238 239 0.105039 AGGCGAGATGGACGGAATTC 59.895 55.000 0.00 0.00 0.00 2.17
239 240 1.215655 GGCGAGATGGACGGAATTCG 61.216 60.000 0.00 0.00 45.88 3.34
240 241 0.248907 GCGAGATGGACGGAATTCGA 60.249 55.000 0.00 0.00 42.43 3.71
241 242 1.478137 CGAGATGGACGGAATTCGAC 58.522 55.000 0.00 0.00 42.43 4.20
254 255 5.740838 GGAATTCGACCGAAAATCAAAAC 57.259 39.130 8.97 0.00 37.69 2.43
255 256 5.216648 GGAATTCGACCGAAAATCAAAACA 58.783 37.500 8.97 0.00 37.69 2.83
256 257 5.116528 GGAATTCGACCGAAAATCAAAACAC 59.883 40.000 8.97 0.00 37.69 3.32
257 258 4.617808 TTCGACCGAAAATCAAAACACA 57.382 36.364 2.02 0.00 0.00 3.72
260 261 4.025229 TCGACCGAAAATCAAAACACAGAG 60.025 41.667 0.00 0.00 0.00 3.35
261 262 4.025229 CGACCGAAAATCAAAACACAGAGA 60.025 41.667 0.00 0.00 0.00 3.10
262 263 5.503357 CGACCGAAAATCAAAACACAGAGAA 60.503 40.000 0.00 0.00 0.00 2.87
263 264 5.821204 ACCGAAAATCAAAACACAGAGAAG 58.179 37.500 0.00 0.00 0.00 2.85
264 265 5.588648 ACCGAAAATCAAAACACAGAGAAGA 59.411 36.000 0.00 0.00 0.00 2.87
265 266 6.263168 ACCGAAAATCAAAACACAGAGAAGAT 59.737 34.615 0.00 0.00 0.00 2.40
266 267 6.580041 CCGAAAATCAAAACACAGAGAAGATG 59.420 38.462 0.00 0.00 0.00 2.90
268 269 7.322222 CGAAAATCAAAACACAGAGAAGATGTC 59.678 37.037 0.00 0.00 0.00 3.06
269 270 7.572523 AAATCAAAACACAGAGAAGATGTCA 57.427 32.000 0.00 0.00 0.00 3.58
270 271 7.756395 AATCAAAACACAGAGAAGATGTCAT 57.244 32.000 0.00 0.00 0.00 3.06
271 272 6.549912 TCAAAACACAGAGAAGATGTCATG 57.450 37.500 0.00 0.00 0.00 3.07
272 273 5.471116 TCAAAACACAGAGAAGATGTCATGG 59.529 40.000 0.00 0.00 0.00 3.66
273 274 3.623906 ACACAGAGAAGATGTCATGGG 57.376 47.619 0.00 0.00 0.00 4.00
274 275 2.238144 ACACAGAGAAGATGTCATGGGG 59.762 50.000 0.00 0.00 0.00 4.96
275 276 1.211457 ACAGAGAAGATGTCATGGGGC 59.789 52.381 0.00 0.00 0.00 5.80
276 277 1.211212 CAGAGAAGATGTCATGGGGCA 59.789 52.381 0.00 0.00 0.00 5.36
277 278 1.489649 AGAGAAGATGTCATGGGGCAG 59.510 52.381 0.00 0.00 0.00 4.85
278 279 1.211457 GAGAAGATGTCATGGGGCAGT 59.789 52.381 0.00 0.00 0.00 4.40
279 280 1.637553 AGAAGATGTCATGGGGCAGTT 59.362 47.619 0.00 0.00 0.00 3.16
280 281 1.747355 GAAGATGTCATGGGGCAGTTG 59.253 52.381 0.00 0.00 0.00 3.16
282 283 1.000739 ATGTCATGGGGCAGTTGGG 59.999 57.895 0.00 0.00 0.00 4.12
283 284 2.362889 GTCATGGGGCAGTTGGGG 60.363 66.667 0.00 0.00 0.00 4.96
284 285 2.863484 TCATGGGGCAGTTGGGGT 60.863 61.111 0.00 0.00 0.00 4.95
285 286 2.681064 CATGGGGCAGTTGGGGTG 60.681 66.667 0.00 0.00 0.00 4.61
286 287 3.996621 ATGGGGCAGTTGGGGTGG 61.997 66.667 0.00 0.00 0.00 4.61
288 289 4.366684 GGGGCAGTTGGGGTGGAG 62.367 72.222 0.00 0.00 0.00 3.86
289 290 4.366684 GGGCAGTTGGGGTGGAGG 62.367 72.222 0.00 0.00 0.00 4.30
290 291 4.366684 GGCAGTTGGGGTGGAGGG 62.367 72.222 0.00 0.00 0.00 4.30
291 292 3.256960 GCAGTTGGGGTGGAGGGA 61.257 66.667 0.00 0.00 0.00 4.20
292 293 3.081554 CAGTTGGGGTGGAGGGAG 58.918 66.667 0.00 0.00 0.00 4.30
293 294 2.204151 AGTTGGGGTGGAGGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
295 296 3.547737 TTGGGGTGGAGGGAGGGA 61.548 66.667 0.00 0.00 0.00 4.20
296 297 3.579451 TTGGGGTGGAGGGAGGGAG 62.579 68.421 0.00 0.00 0.00 4.30
297 298 4.825679 GGGGTGGAGGGAGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
298 299 4.825679 GGGTGGAGGGAGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
299 300 4.026357 GGTGGAGGGAGGGAGGGT 62.026 72.222 0.00 0.00 0.00 4.34
300 301 2.365768 GTGGAGGGAGGGAGGGTC 60.366 72.222 0.00 0.00 0.00 4.46
301 302 3.695825 TGGAGGGAGGGAGGGTCC 61.696 72.222 0.00 0.00 35.23 4.46
302 303 3.369388 GGAGGGAGGGAGGGTCCT 61.369 72.222 0.00 0.00 40.43 3.85
303 304 2.041405 GAGGGAGGGAGGGTCCTG 60.041 72.222 0.00 0.00 37.25 3.86
304 305 3.700350 AGGGAGGGAGGGTCCTGG 61.700 72.222 0.00 0.00 37.25 4.45
305 306 4.825679 GGGAGGGAGGGTCCTGGG 62.826 77.778 0.00 0.00 37.25 4.45
314 315 3.009115 GGTCCTGGGCCAGCTGTA 61.009 66.667 28.51 9.90 0.00 2.74
315 316 2.586792 GTCCTGGGCCAGCTGTAG 59.413 66.667 28.51 14.08 0.00 2.74
316 317 2.688666 TCCTGGGCCAGCTGTAGG 60.689 66.667 28.51 14.57 0.00 3.18
318 319 2.300967 CCTGGGCCAGCTGTAGGAA 61.301 63.158 28.51 0.00 0.00 3.36
319 320 1.222936 CTGGGCCAGCTGTAGGAAG 59.777 63.158 22.68 0.00 0.00 3.46
320 321 2.262774 CTGGGCCAGCTGTAGGAAGG 62.263 65.000 22.68 0.00 0.00 3.46
321 322 1.995626 GGGCCAGCTGTAGGAAGGA 60.996 63.158 13.81 0.00 0.00 3.36
322 323 1.562672 GGGCCAGCTGTAGGAAGGAA 61.563 60.000 13.81 0.00 0.00 3.36
326 327 2.911484 CCAGCTGTAGGAAGGAATGAC 58.089 52.381 13.81 0.00 0.00 3.06
327 328 2.503356 CCAGCTGTAGGAAGGAATGACT 59.497 50.000 13.81 0.00 0.00 3.41
329 330 2.428890 AGCTGTAGGAAGGAATGACTCG 59.571 50.000 0.00 0.00 0.00 4.18
331 332 2.101582 CTGTAGGAAGGAATGACTCGGG 59.898 54.545 0.00 0.00 0.00 5.14
332 333 1.413077 GTAGGAAGGAATGACTCGGGG 59.587 57.143 0.00 0.00 0.00 5.73
333 334 0.983378 AGGAAGGAATGACTCGGGGG 60.983 60.000 0.00 0.00 0.00 5.40
334 335 0.981277 GGAAGGAATGACTCGGGGGA 60.981 60.000 0.00 0.00 0.00 4.81
337 338 1.689582 GGAATGACTCGGGGGAGGT 60.690 63.158 0.00 0.00 0.00 3.85
338 339 1.522569 GAATGACTCGGGGGAGGTG 59.477 63.158 0.00 0.00 0.00 4.00
339 340 2.595009 GAATGACTCGGGGGAGGTGC 62.595 65.000 0.00 0.00 0.00 5.01
340 341 3.924013 ATGACTCGGGGGAGGTGCA 62.924 63.158 0.00 0.00 0.00 4.57
341 342 4.083862 GACTCGGGGGAGGTGCAC 62.084 72.222 8.80 8.80 0.00 4.57
346 347 3.717294 GGGGGAGGTGCACGTGAT 61.717 66.667 22.23 0.52 0.00 3.06
348 349 2.125106 GGGAGGTGCACGTGATCC 60.125 66.667 22.23 19.47 0.00 3.36
350 351 2.125106 GAGGTGCACGTGATCCCC 60.125 66.667 22.23 12.17 0.00 4.81
351 352 2.927856 AGGTGCACGTGATCCCCA 60.928 61.111 22.23 3.91 0.00 4.96
353 354 2.040544 GGTGCACGTGATCCCCAAG 61.041 63.158 22.23 0.00 0.00 3.61
354 355 1.302511 GTGCACGTGATCCCCAAGT 60.303 57.895 22.23 0.00 37.99 3.16
355 356 1.003839 TGCACGTGATCCCCAAGTC 60.004 57.895 22.23 0.00 35.30 3.01
356 357 1.745489 GCACGTGATCCCCAAGTCC 60.745 63.158 22.23 0.00 35.30 3.85
357 358 1.676968 CACGTGATCCCCAAGTCCA 59.323 57.895 10.90 0.00 35.30 4.02
358 359 0.391661 CACGTGATCCCCAAGTCCAG 60.392 60.000 10.90 0.00 35.30 3.86
360 361 0.833287 CGTGATCCCCAAGTCCAGAT 59.167 55.000 0.00 0.00 0.00 2.90
361 362 1.473965 CGTGATCCCCAAGTCCAGATG 60.474 57.143 0.00 0.00 0.00 2.90
362 363 0.548031 TGATCCCCAAGTCCAGATGC 59.452 55.000 0.00 0.00 0.00 3.91
364 365 1.649271 ATCCCCAAGTCCAGATGCCC 61.649 60.000 0.00 0.00 0.00 5.36
365 366 2.124570 CCCAAGTCCAGATGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
366 367 2.825836 CCAAGTCCAGATGCCCGC 60.826 66.667 0.00 0.00 0.00 6.13
367 368 3.197790 CAAGTCCAGATGCCCGCG 61.198 66.667 0.00 0.00 0.00 6.46
389 390 3.698820 GGGGGACGCGTGGTTAGT 61.699 66.667 20.70 0.00 0.00 2.24
393 394 1.012486 GGGACGCGTGGTTAGTGAAG 61.012 60.000 20.70 0.00 0.00 3.02
396 397 2.388232 CGCGTGGTTAGTGAAGGGC 61.388 63.158 0.00 0.00 0.00 5.19
398 399 2.388232 CGTGGTTAGTGAAGGGCGC 61.388 63.158 0.00 0.00 0.00 6.53
400 401 2.047560 GGTTAGTGAAGGGCGCGT 60.048 61.111 8.43 0.00 0.00 6.01
402 403 1.373748 GTTAGTGAAGGGCGCGTGA 60.374 57.895 8.43 0.00 0.00 4.35
403 404 1.373748 TTAGTGAAGGGCGCGTGAC 60.374 57.895 8.43 0.00 0.00 3.67
404 405 1.812686 TTAGTGAAGGGCGCGTGACT 61.813 55.000 13.23 13.23 0.00 3.41
406 407 1.153628 GTGAAGGGCGCGTGACTAT 60.154 57.895 8.43 0.00 0.00 2.12
407 408 1.153647 TGAAGGGCGCGTGACTATG 60.154 57.895 8.43 0.00 0.00 2.23
409 410 0.101759 GAAGGGCGCGTGACTATGTA 59.898 55.000 8.43 0.00 0.00 2.29
410 411 0.102481 AAGGGCGCGTGACTATGTAG 59.898 55.000 8.43 0.00 0.00 2.74
411 412 1.949631 GGGCGCGTGACTATGTAGC 60.950 63.158 8.43 0.00 0.00 3.58
412 413 1.226859 GGCGCGTGACTATGTAGCA 60.227 57.895 8.43 0.00 0.00 3.49
414 415 0.504384 GCGCGTGACTATGTAGCATG 59.496 55.000 8.43 0.00 0.00 4.06
415 416 1.131771 CGCGTGACTATGTAGCATGG 58.868 55.000 0.00 0.00 0.00 3.66
416 417 1.269051 CGCGTGACTATGTAGCATGGA 60.269 52.381 0.00 0.00 0.00 3.41
418 419 2.385315 CGTGACTATGTAGCATGGACG 58.615 52.381 0.00 0.00 0.00 4.79
419 420 2.743938 GTGACTATGTAGCATGGACGG 58.256 52.381 0.00 0.00 0.00 4.79
422 423 0.032130 CTATGTAGCATGGACGGCGT 59.968 55.000 14.65 14.65 36.08 5.68
423 424 0.249280 TATGTAGCATGGACGGCGTG 60.249 55.000 21.19 3.49 36.08 5.34
424 425 2.890474 GTAGCATGGACGGCGTGG 60.890 66.667 21.19 5.13 36.08 4.94
425 426 4.155733 TAGCATGGACGGCGTGGG 62.156 66.667 21.19 4.72 36.08 4.61
429 430 4.175337 ATGGACGGCGTGGGATGG 62.175 66.667 21.19 0.00 0.00 3.51
432 433 3.463585 GACGGCGTGGGATGGGTA 61.464 66.667 21.19 0.00 0.00 3.69
433 434 3.728279 GACGGCGTGGGATGGGTAC 62.728 68.421 21.19 0.00 0.00 3.34
434 435 3.467226 CGGCGTGGGATGGGTACT 61.467 66.667 0.00 0.00 0.00 2.73
435 436 2.995547 GGCGTGGGATGGGTACTT 59.004 61.111 0.00 0.00 0.00 2.24
436 437 1.301954 GGCGTGGGATGGGTACTTT 59.698 57.895 0.00 0.00 0.00 2.66
437 438 0.746923 GGCGTGGGATGGGTACTTTC 60.747 60.000 0.00 0.00 0.00 2.62
438 439 0.746923 GCGTGGGATGGGTACTTTCC 60.747 60.000 0.00 0.00 0.00 3.13
441 442 2.290705 CGTGGGATGGGTACTTTCCTTT 60.291 50.000 8.50 0.00 31.69 3.11
443 444 3.762288 GTGGGATGGGTACTTTCCTTTTC 59.238 47.826 8.50 0.00 31.69 2.29
444 445 3.660669 TGGGATGGGTACTTTCCTTTTCT 59.339 43.478 8.50 0.00 31.69 2.52
446 447 4.017126 GGATGGGTACTTTCCTTTTCTGG 58.983 47.826 0.00 0.00 0.00 3.86
447 448 2.871453 TGGGTACTTTCCTTTTCTGGC 58.129 47.619 0.00 0.00 0.00 4.85
449 450 1.810755 GGTACTTTCCTTTTCTGGCCG 59.189 52.381 0.00 0.00 0.00 6.13
450 451 2.551504 GGTACTTTCCTTTTCTGGCCGA 60.552 50.000 0.00 0.00 0.00 5.54
451 452 2.358322 ACTTTCCTTTTCTGGCCGAA 57.642 45.000 0.00 1.58 0.00 4.30
471 472 2.383608 GGGACCAGGTGCTTTCCTA 58.616 57.895 11.48 0.00 35.87 2.94
472 473 0.919710 GGGACCAGGTGCTTTCCTAT 59.080 55.000 11.48 0.00 35.87 2.57
473 474 1.285078 GGGACCAGGTGCTTTCCTATT 59.715 52.381 11.48 0.00 35.87 1.73
474 475 2.291605 GGGACCAGGTGCTTTCCTATTT 60.292 50.000 11.48 0.00 35.87 1.40
476 477 3.193479 GGACCAGGTGCTTTCCTATTTTG 59.807 47.826 3.25 0.00 35.87 2.44
477 478 3.165071 ACCAGGTGCTTTCCTATTTTGG 58.835 45.455 0.00 0.00 35.87 3.28
478 479 2.094026 CCAGGTGCTTTCCTATTTTGGC 60.094 50.000 0.00 0.00 35.87 4.52
479 480 2.094026 CAGGTGCTTTCCTATTTTGGCC 60.094 50.000 0.00 0.00 35.87 5.36
480 481 1.135112 GGTGCTTTCCTATTTTGGCCG 60.135 52.381 0.00 0.00 0.00 6.13
481 482 1.135112 GTGCTTTCCTATTTTGGCCGG 60.135 52.381 0.00 0.00 0.00 6.13
482 483 1.182667 GCTTTCCTATTTTGGCCGGT 58.817 50.000 1.90 0.00 0.00 5.28
483 484 1.134367 GCTTTCCTATTTTGGCCGGTC 59.866 52.381 0.00 0.00 0.00 4.79
484 485 1.400494 CTTTCCTATTTTGGCCGGTCG 59.600 52.381 0.00 0.00 0.00 4.79
485 486 1.027792 TTCCTATTTTGGCCGGTCGC 61.028 55.000 0.00 0.00 0.00 5.19
486 487 1.451387 CCTATTTTGGCCGGTCGCT 60.451 57.895 0.00 0.00 37.74 4.93
487 488 1.436983 CCTATTTTGGCCGGTCGCTC 61.437 60.000 0.00 0.00 37.74 5.03
488 489 1.762222 CTATTTTGGCCGGTCGCTCG 61.762 60.000 0.00 0.00 37.74 5.03
505 506 2.978824 GGGAACGCTAGCAGGACA 59.021 61.111 16.45 0.00 0.00 4.02
506 507 1.295423 GGGAACGCTAGCAGGACAA 59.705 57.895 16.45 0.00 0.00 3.18
507 508 0.107654 GGGAACGCTAGCAGGACAAT 60.108 55.000 16.45 0.00 0.00 2.71
508 509 1.009829 GGAACGCTAGCAGGACAATG 58.990 55.000 16.45 0.00 0.00 2.82
509 510 0.375106 GAACGCTAGCAGGACAATGC 59.625 55.000 16.45 0.00 46.88 3.56
515 516 2.956987 GCAGGACAATGCGTGCTT 59.043 55.556 12.51 0.00 45.30 3.91
517 518 1.443194 CAGGACAATGCGTGCTTGC 60.443 57.895 0.00 0.00 45.30 4.01
520 521 0.097674 GGACAATGCGTGCTTGCTAG 59.902 55.000 2.56 0.00 35.36 3.42
521 522 1.078709 GACAATGCGTGCTTGCTAGA 58.921 50.000 0.00 0.00 35.36 2.43
522 523 0.798776 ACAATGCGTGCTTGCTAGAC 59.201 50.000 0.00 0.00 35.36 2.59
523 524 0.247419 CAATGCGTGCTTGCTAGACG 60.247 55.000 12.84 12.84 36.18 4.18
525 526 1.354337 ATGCGTGCTTGCTAGACGTG 61.354 55.000 16.34 0.00 35.52 4.49
526 527 2.022129 GCGTGCTTGCTAGACGTGT 61.022 57.895 16.34 0.00 35.52 4.49
527 528 1.945776 GCGTGCTTGCTAGACGTGTC 61.946 60.000 16.34 0.00 35.52 3.67
528 529 1.344942 CGTGCTTGCTAGACGTGTCC 61.345 60.000 0.00 0.00 0.00 4.02
529 530 1.014564 GTGCTTGCTAGACGTGTCCC 61.015 60.000 0.00 0.00 0.00 4.46
530 531 1.292223 GCTTGCTAGACGTGTCCCA 59.708 57.895 0.00 0.00 0.00 4.37
531 532 0.320421 GCTTGCTAGACGTGTCCCAA 60.320 55.000 0.00 0.00 0.00 4.12
532 533 1.676014 GCTTGCTAGACGTGTCCCAAT 60.676 52.381 0.00 0.00 0.00 3.16
533 534 2.418197 GCTTGCTAGACGTGTCCCAATA 60.418 50.000 0.00 0.00 0.00 1.90
534 535 3.857052 CTTGCTAGACGTGTCCCAATAA 58.143 45.455 0.00 0.00 0.00 1.40
536 537 2.829720 TGCTAGACGTGTCCCAATAAGT 59.170 45.455 0.00 0.00 0.00 2.24
538 539 4.463539 TGCTAGACGTGTCCCAATAAGTAA 59.536 41.667 0.00 0.00 0.00 2.24
539 540 5.128171 TGCTAGACGTGTCCCAATAAGTAAT 59.872 40.000 0.00 0.00 0.00 1.89
540 541 5.462398 GCTAGACGTGTCCCAATAAGTAATG 59.538 44.000 0.00 0.00 0.00 1.90
541 542 5.416271 AGACGTGTCCCAATAAGTAATGT 57.584 39.130 0.00 0.00 0.00 2.71
542 543 5.801380 AGACGTGTCCCAATAAGTAATGTT 58.199 37.500 0.00 0.00 0.00 2.71
544 545 4.698304 ACGTGTCCCAATAAGTAATGTTGG 59.302 41.667 0.00 0.00 46.78 3.77
555 556 9.347240 CAATAAGTAATGTTGGATCTCCATCTT 57.653 33.333 0.00 0.00 46.97 2.40
560 561 5.815233 ATGTTGGATCTCCATCTTACGAT 57.185 39.130 0.00 0.00 46.97 3.73
561 562 5.614324 TGTTGGATCTCCATCTTACGATT 57.386 39.130 0.00 0.00 46.97 3.34
562 563 5.359756 TGTTGGATCTCCATCTTACGATTG 58.640 41.667 0.00 0.00 46.97 2.67
563 564 4.607293 TGGATCTCCATCTTACGATTGG 57.393 45.455 0.00 0.00 42.01 3.16
564 565 3.324846 TGGATCTCCATCTTACGATTGGG 59.675 47.826 0.00 0.00 42.01 4.12
565 566 2.910688 TCTCCATCTTACGATTGGGC 57.089 50.000 0.00 0.00 0.00 5.36
569 570 1.881973 CCATCTTACGATTGGGCCATG 59.118 52.381 7.26 2.77 0.00 3.66
571 572 1.208706 TCTTACGATTGGGCCATGGA 58.791 50.000 18.40 0.00 0.00 3.41
572 573 1.134220 TCTTACGATTGGGCCATGGAC 60.134 52.381 18.40 14.40 0.00 4.02
574 575 0.180171 TACGATTGGGCCATGGACAG 59.820 55.000 22.13 7.32 0.00 3.51
575 576 1.224315 CGATTGGGCCATGGACAGA 59.776 57.895 22.13 7.35 0.00 3.41
576 577 1.097547 CGATTGGGCCATGGACAGAC 61.098 60.000 22.13 1.93 0.00 3.51
577 578 0.753111 GATTGGGCCATGGACAGACC 60.753 60.000 22.13 8.49 39.54 3.85
587 588 1.216710 GGACAGACCAGCCGAAGAG 59.783 63.158 0.00 0.00 38.79 2.85
588 589 1.536943 GGACAGACCAGCCGAAGAGT 61.537 60.000 0.00 0.00 38.79 3.24
589 590 0.109039 GACAGACCAGCCGAAGAGTC 60.109 60.000 0.00 0.00 0.00 3.36
590 591 1.216710 CAGACCAGCCGAAGAGTCC 59.783 63.158 0.00 0.00 0.00 3.85
591 592 1.228894 AGACCAGCCGAAGAGTCCA 60.229 57.895 0.00 0.00 0.00 4.02
592 593 1.216710 GACCAGCCGAAGAGTCCAG 59.783 63.158 0.00 0.00 0.00 3.86
593 594 1.534235 ACCAGCCGAAGAGTCCAGT 60.534 57.895 0.00 0.00 0.00 4.00
594 595 1.079543 CCAGCCGAAGAGTCCAGTG 60.080 63.158 0.00 0.00 0.00 3.66
595 596 1.739562 CAGCCGAAGAGTCCAGTGC 60.740 63.158 0.00 0.00 0.00 4.40
596 597 1.910772 AGCCGAAGAGTCCAGTGCT 60.911 57.895 0.00 0.00 0.00 4.40
597 598 1.004440 GCCGAAGAGTCCAGTGCTT 60.004 57.895 0.00 0.00 0.00 3.91
599 600 1.433534 CCGAAGAGTCCAGTGCTTTC 58.566 55.000 0.00 0.00 0.00 2.62
600 601 1.001406 CCGAAGAGTCCAGTGCTTTCT 59.999 52.381 0.00 0.00 0.00 2.52
603 604 3.733337 GAAGAGTCCAGTGCTTTCTCAA 58.267 45.455 0.00 0.00 0.00 3.02
605 606 3.936564 AGAGTCCAGTGCTTTCTCAATC 58.063 45.455 0.00 0.00 0.00 2.67
607 608 4.774726 AGAGTCCAGTGCTTTCTCAATCTA 59.225 41.667 0.00 0.00 0.00 1.98
608 609 5.083533 AGTCCAGTGCTTTCTCAATCTAG 57.916 43.478 0.00 0.00 0.00 2.43
609 610 4.530161 AGTCCAGTGCTTTCTCAATCTAGT 59.470 41.667 0.00 0.00 0.00 2.57
610 611 4.867608 GTCCAGTGCTTTCTCAATCTAGTC 59.132 45.833 0.00 0.00 0.00 2.59
611 612 4.081420 TCCAGTGCTTTCTCAATCTAGTCC 60.081 45.833 0.00 0.00 0.00 3.85
613 614 5.486526 CAGTGCTTTCTCAATCTAGTCCTT 58.513 41.667 0.00 0.00 0.00 3.36
614 615 5.580297 CAGTGCTTTCTCAATCTAGTCCTTC 59.420 44.000 0.00 0.00 0.00 3.46
616 617 4.080863 TGCTTTCTCAATCTAGTCCTTCCC 60.081 45.833 0.00 0.00 0.00 3.97
618 619 5.683770 GCTTTCTCAATCTAGTCCTTCCCTC 60.684 48.000 0.00 0.00 0.00 4.30
619 620 3.556999 TCTCAATCTAGTCCTTCCCTCG 58.443 50.000 0.00 0.00 0.00 4.63
622 623 2.766828 CAATCTAGTCCTTCCCTCGGTT 59.233 50.000 0.00 0.00 0.00 4.44
623 624 2.617840 TCTAGTCCTTCCCTCGGTTT 57.382 50.000 0.00 0.00 0.00 3.27
624 625 2.454538 TCTAGTCCTTCCCTCGGTTTC 58.545 52.381 0.00 0.00 0.00 2.78
625 626 2.176889 CTAGTCCTTCCCTCGGTTTCA 58.823 52.381 0.00 0.00 0.00 2.69
626 627 0.685660 AGTCCTTCCCTCGGTTTCAC 59.314 55.000 0.00 0.00 0.00 3.18
627 628 0.321387 GTCCTTCCCTCGGTTTCACC 60.321 60.000 0.00 0.00 34.05 4.02
639 640 2.285977 GGTTTCACCGATACATCACCC 58.714 52.381 0.00 0.00 0.00 4.61
641 642 3.340034 GTTTCACCGATACATCACCCAA 58.660 45.455 0.00 0.00 0.00 4.12
642 643 3.704800 TTCACCGATACATCACCCAAA 57.295 42.857 0.00 0.00 0.00 3.28
645 646 2.422127 CACCGATACATCACCCAAAACC 59.578 50.000 0.00 0.00 0.00 3.27
646 647 2.040545 ACCGATACATCACCCAAAACCA 59.959 45.455 0.00 0.00 0.00 3.67
647 648 3.287222 CCGATACATCACCCAAAACCAT 58.713 45.455 0.00 0.00 0.00 3.55
648 649 4.080243 ACCGATACATCACCCAAAACCATA 60.080 41.667 0.00 0.00 0.00 2.74
649 650 4.515191 CCGATACATCACCCAAAACCATAG 59.485 45.833 0.00 0.00 0.00 2.23
650 651 4.024048 CGATACATCACCCAAAACCATAGC 60.024 45.833 0.00 0.00 0.00 2.97
651 652 2.456577 ACATCACCCAAAACCATAGCC 58.543 47.619 0.00 0.00 0.00 3.93
653 654 0.402504 TCACCCAAAACCATAGCCGT 59.597 50.000 0.00 0.00 0.00 5.68
687 693 3.636231 CACTTCCGGAGCCACCCA 61.636 66.667 3.34 0.00 34.64 4.51
699 705 1.756024 CCACCCAAACCGACCACTA 59.244 57.895 0.00 0.00 0.00 2.74
700 706 0.321298 CCACCCAAACCGACCACTAG 60.321 60.000 0.00 0.00 0.00 2.57
702 708 0.683412 ACCCAAACCGACCACTAGAC 59.317 55.000 0.00 0.00 0.00 2.59
705 711 1.607251 CCAAACCGACCACTAGACACC 60.607 57.143 0.00 0.00 0.00 4.16
706 712 1.069513 CAAACCGACCACTAGACACCA 59.930 52.381 0.00 0.00 0.00 4.17
733 7687 4.794439 CCTCGCATGTCGTCGGCA 62.794 66.667 0.14 0.14 39.67 5.69
783 7737 0.184211 TCATATCCGGGGTCGTGAGA 59.816 55.000 0.00 0.00 38.16 3.27
816 7770 1.671328 CTGAAGATCGTCGGCTACTCA 59.329 52.381 4.47 0.00 0.00 3.41
860 7814 0.761802 GAGGGGATCGAATCTTGCCT 59.238 55.000 0.00 0.00 0.00 4.75
992 7946 1.535833 GAGGTCGAGACTGTGAAGGA 58.464 55.000 3.09 0.00 0.00 3.36
1006 7960 6.208644 ACTGTGAAGGAAAAATTCATGTTCG 58.791 36.000 0.00 0.00 38.81 3.95
1089 8043 6.351286 GGGAATTTTCTGTGCATAAAGGTCAT 60.351 38.462 0.00 0.00 0.00 3.06
1146 8100 2.038295 GGAATCCGAGCATCTCAAGGAT 59.962 50.000 0.00 0.00 42.93 3.24
1296 8251 4.298332 GCGTCAATGTCAAATTCCAAGTT 58.702 39.130 0.00 0.00 0.00 2.66
1299 8254 5.600696 GTCAATGTCAAATTCCAAGTTGGT 58.399 37.500 21.35 0.00 39.03 3.67
1376 8331 0.877743 GCAGAGTTCTTTGGCCAGAC 59.122 55.000 5.11 3.96 0.00 3.51
1408 8363 2.586079 CCACTGAGGCCATACGCG 60.586 66.667 5.01 3.53 38.94 6.01
1436 8391 1.451504 TGGAGGCACCAGTGTTCAG 59.548 57.895 0.00 0.00 44.64 3.02
1501 8456 5.503927 TGAAGCAAGAAGAAGAATATGCCT 58.496 37.500 0.00 0.00 34.44 4.75
1738 8693 3.251004 CGAGTTTTTAACCAAGAGCTGCT 59.749 43.478 0.00 0.00 0.00 4.24
1789 8744 4.384208 CCCAGGTTGCTGCTAGTATACTTT 60.384 45.833 11.40 0.00 0.00 2.66
1882 8842 1.261480 ACTGACTACAGACCCTGCAG 58.739 55.000 6.78 6.78 46.03 4.41
2038 9139 2.827921 AGCCTTTCAATTAGTTGCCCTG 59.172 45.455 0.00 0.00 35.26 4.45
2223 9333 4.764679 TTATGGCTGCAGTTTGTACTTG 57.235 40.909 16.64 0.00 30.26 3.16
2224 9334 2.340210 TGGCTGCAGTTTGTACTTGA 57.660 45.000 16.64 0.00 30.26 3.02
2226 9336 2.553602 TGGCTGCAGTTTGTACTTGATG 59.446 45.455 16.64 0.00 30.26 3.07
2228 9338 3.441572 GGCTGCAGTTTGTACTTGATGAT 59.558 43.478 16.64 0.00 30.26 2.45
2229 9339 4.082571 GGCTGCAGTTTGTACTTGATGATT 60.083 41.667 16.64 0.00 30.26 2.57
2230 9340 5.464168 GCTGCAGTTTGTACTTGATGATTT 58.536 37.500 16.64 0.00 30.26 2.17
2264 9395 2.432146 TGGCTGCTAAGGTAGTGATCTG 59.568 50.000 0.00 0.00 0.00 2.90
2266 9397 3.243704 GGCTGCTAAGGTAGTGATCTGAG 60.244 52.174 0.00 0.00 0.00 3.35
2283 9414 8.567948 GTGATCTGAGGAATGTTTTGAAGTTTA 58.432 33.333 0.00 0.00 0.00 2.01
2326 9457 6.366877 ACAAGCTTATGATGTCATTTTGTTGC 59.633 34.615 0.00 0.00 37.76 4.17
2331 9462 7.095523 GCTTATGATGTCATTTTGTTGCTGTTT 60.096 33.333 0.19 0.00 37.76 2.83
2464 9595 7.189079 ACATCCAAAAGTAAAAAGGGTTCAA 57.811 32.000 0.00 0.00 0.00 2.69
2541 9672 6.468956 CCTTGTGATTGTAATAAACACATCGC 59.531 38.462 0.00 0.00 40.32 4.58
2580 9711 3.118149 TCACTGGCTCATTACATGCTCAT 60.118 43.478 0.00 0.00 0.00 2.90
2620 9751 7.238710 AGAACTTAATTTCCCTTTGCTTCCTA 58.761 34.615 2.18 0.00 0.00 2.94
2621 9752 7.728532 AGAACTTAATTTCCCTTTGCTTCCTAA 59.271 33.333 2.18 0.00 0.00 2.69
2702 9833 4.458989 TGCTGGAATCTTTGGTATGAACAC 59.541 41.667 0.00 0.00 0.00 3.32
2703 9834 4.458989 GCTGGAATCTTTGGTATGAACACA 59.541 41.667 0.00 0.00 0.00 3.72
2704 9835 5.619981 GCTGGAATCTTTGGTATGAACACAC 60.620 44.000 0.00 0.00 0.00 3.82
2705 9836 4.764823 TGGAATCTTTGGTATGAACACACC 59.235 41.667 0.00 0.00 35.24 4.16
2706 9837 5.010282 GGAATCTTTGGTATGAACACACCT 58.990 41.667 3.94 0.00 35.73 4.00
2707 9838 5.476945 GGAATCTTTGGTATGAACACACCTT 59.523 40.000 3.94 0.00 35.73 3.50
2708 9839 6.657541 GGAATCTTTGGTATGAACACACCTTA 59.342 38.462 3.94 0.00 35.73 2.69
2709 9840 7.339466 GGAATCTTTGGTATGAACACACCTTAT 59.661 37.037 3.94 0.00 35.73 1.73
2710 9841 7.630242 ATCTTTGGTATGAACACACCTTATG 57.370 36.000 3.94 0.00 35.73 1.90
2711 9842 5.943416 TCTTTGGTATGAACACACCTTATGG 59.057 40.000 3.94 0.00 35.73 2.74
2724 9855 5.532406 CACACCTTATGGCTTATGCTGTAAT 59.468 40.000 0.13 0.00 39.59 1.89
2732 9863 3.194861 GCTTATGCTGTAATGACGACCA 58.805 45.455 0.00 0.00 36.03 4.02
2734 9865 4.319046 GCTTATGCTGTAATGACGACCATG 60.319 45.833 0.00 0.00 34.13 3.66
2744 9875 2.046938 ACGACCATGGACACGTCTT 58.953 52.632 21.47 0.00 33.80 3.01
2763 9894 5.181245 CGTCTTTAAATGGGTGAATGACAGT 59.819 40.000 0.00 0.00 31.19 3.55
2768 9899 5.964958 AAATGGGTGAATGACAGTACTTG 57.035 39.130 0.00 0.00 0.00 3.16
2769 9900 4.908601 ATGGGTGAATGACAGTACTTGA 57.091 40.909 0.00 0.00 0.00 3.02
2772 9903 3.997021 GGGTGAATGACAGTACTTGACAG 59.003 47.826 0.00 0.00 35.04 3.51
2778 9909 7.385205 GTGAATGACAGTACTTGACAGTAACAT 59.615 37.037 0.00 0.00 37.24 2.71
2779 9910 7.384932 TGAATGACAGTACTTGACAGTAACATG 59.615 37.037 0.00 0.00 37.24 3.21
2797 9928 9.173021 AGTAACATGCTTTGTATAGTAATTGCA 57.827 29.630 0.00 0.00 37.68 4.08
2798 9929 9.950680 GTAACATGCTTTGTATAGTAATTGCAT 57.049 29.630 0.00 0.00 37.68 3.96
2883 10014 2.158842 GCTATCTGTGCCATCAGGTTCT 60.159 50.000 0.00 0.00 37.19 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.803426 CTCGTCACGGCCTGCCTC 62.803 72.222 6.60 0.00 0.00 4.70
10 11 4.838486 GCTCCTCCGCTCGTCACG 62.838 72.222 0.00 0.00 0.00 4.35
11 12 4.500116 GGCTCCTCCGCTCGTCAC 62.500 72.222 0.00 0.00 0.00 3.67
20 21 4.247380 CCCAGATGCGGCTCCTCC 62.247 72.222 0.00 0.00 0.00 4.30
21 22 4.247380 CCCCAGATGCGGCTCCTC 62.247 72.222 0.00 0.00 0.00 3.71
49 50 4.088762 GACATGTGTGTGCGGCGG 62.089 66.667 9.78 0.00 39.09 6.13
50 51 4.428922 CGACATGTGTGTGCGGCG 62.429 66.667 1.15 0.51 39.09 6.46
51 52 3.015293 CTCGACATGTGTGTGCGGC 62.015 63.158 1.15 0.00 39.09 6.53
52 53 3.015293 GCTCGACATGTGTGTGCGG 62.015 63.158 1.15 0.00 39.09 5.69
53 54 2.219209 CTGCTCGACATGTGTGTGCG 62.219 60.000 1.15 0.00 39.09 5.34
54 55 1.494628 CTGCTCGACATGTGTGTGC 59.505 57.895 1.15 8.88 39.09 4.57
56 57 0.037882 CTCCTGCTCGACATGTGTGT 60.038 55.000 1.15 0.00 42.49 3.72
57 58 0.244721 TCTCCTGCTCGACATGTGTG 59.755 55.000 1.15 0.00 0.00 3.82
59 60 1.850377 GATCTCCTGCTCGACATGTG 58.150 55.000 1.15 0.00 0.00 3.21
60 61 0.383590 CGATCTCCTGCTCGACATGT 59.616 55.000 0.00 0.00 37.05 3.21
62 63 0.383590 CACGATCTCCTGCTCGACAT 59.616 55.000 0.00 0.00 38.24 3.06
63 64 0.676782 TCACGATCTCCTGCTCGACA 60.677 55.000 0.00 0.00 38.24 4.35
64 65 0.665835 ATCACGATCTCCTGCTCGAC 59.334 55.000 0.00 0.00 38.24 4.20
66 67 1.857217 CAAATCACGATCTCCTGCTCG 59.143 52.381 0.00 0.00 40.62 5.03
68 69 2.499289 AGACAAATCACGATCTCCTGCT 59.501 45.455 0.00 0.00 0.00 4.24
69 70 2.898705 AGACAAATCACGATCTCCTGC 58.101 47.619 0.00 0.00 0.00 4.85
70 71 4.500545 CCCTAGACAAATCACGATCTCCTG 60.501 50.000 0.00 0.00 0.00 3.86
71 72 3.639094 CCCTAGACAAATCACGATCTCCT 59.361 47.826 0.00 0.00 0.00 3.69
72 73 3.385111 ACCCTAGACAAATCACGATCTCC 59.615 47.826 0.00 0.00 0.00 3.71
75 76 5.290386 CCTAACCCTAGACAAATCACGATC 58.710 45.833 0.00 0.00 0.00 3.69
76 77 4.101119 CCCTAACCCTAGACAAATCACGAT 59.899 45.833 0.00 0.00 0.00 3.73
78 79 3.793559 CCCTAACCCTAGACAAATCACG 58.206 50.000 0.00 0.00 0.00 4.35
79 80 3.542648 GCCCTAACCCTAGACAAATCAC 58.457 50.000 0.00 0.00 0.00 3.06
80 81 2.169769 CGCCCTAACCCTAGACAAATCA 59.830 50.000 0.00 0.00 0.00 2.57
84 85 1.648116 AACGCCCTAACCCTAGACAA 58.352 50.000 0.00 0.00 0.00 3.18
85 86 1.276989 CAAACGCCCTAACCCTAGACA 59.723 52.381 0.00 0.00 0.00 3.41
86 87 1.406477 CCAAACGCCCTAACCCTAGAC 60.406 57.143 0.00 0.00 0.00 2.59
87 88 0.906775 CCAAACGCCCTAACCCTAGA 59.093 55.000 0.00 0.00 0.00 2.43
88 89 0.616891 ACCAAACGCCCTAACCCTAG 59.383 55.000 0.00 0.00 0.00 3.02
89 90 1.003464 GAACCAAACGCCCTAACCCTA 59.997 52.381 0.00 0.00 0.00 3.53
90 91 0.251033 GAACCAAACGCCCTAACCCT 60.251 55.000 0.00 0.00 0.00 4.34
91 92 1.579964 CGAACCAAACGCCCTAACCC 61.580 60.000 0.00 0.00 0.00 4.11
92 93 0.603439 TCGAACCAAACGCCCTAACC 60.603 55.000 0.00 0.00 0.00 2.85
93 94 1.395954 GATCGAACCAAACGCCCTAAC 59.604 52.381 0.00 0.00 0.00 2.34
96 97 1.376812 GGATCGAACCAAACGCCCT 60.377 57.895 6.88 0.00 0.00 5.19
97 98 0.958876 AAGGATCGAACCAAACGCCC 60.959 55.000 14.80 0.00 0.00 6.13
98 99 0.879090 AAAGGATCGAACCAAACGCC 59.121 50.000 14.80 0.00 0.00 5.68
100 101 6.910433 CCAATATAAAAGGATCGAACCAAACG 59.090 38.462 14.80 0.00 0.00 3.60
101 102 7.200455 CCCAATATAAAAGGATCGAACCAAAC 58.800 38.462 14.80 0.00 0.00 2.93
102 103 6.183360 GCCCAATATAAAAGGATCGAACCAAA 60.183 38.462 14.80 0.00 0.00 3.28
103 104 5.300792 GCCCAATATAAAAGGATCGAACCAA 59.699 40.000 14.80 0.00 0.00 3.67
104 105 4.825085 GCCCAATATAAAAGGATCGAACCA 59.175 41.667 14.80 0.00 0.00 3.67
106 107 6.385649 TTGCCCAATATAAAAGGATCGAAC 57.614 37.500 0.00 0.00 0.00 3.95
108 109 5.009610 GCTTTGCCCAATATAAAAGGATCGA 59.990 40.000 0.00 0.00 31.67 3.59
109 110 5.222631 GCTTTGCCCAATATAAAAGGATCG 58.777 41.667 0.00 0.00 31.67 3.69
110 111 5.221244 ACGCTTTGCCCAATATAAAAGGATC 60.221 40.000 0.00 0.00 31.67 3.36
113 114 4.111916 CACGCTTTGCCCAATATAAAAGG 58.888 43.478 0.00 0.00 31.67 3.11
114 115 3.551485 GCACGCTTTGCCCAATATAAAAG 59.449 43.478 0.00 0.00 46.63 2.27
116 117 3.157932 GCACGCTTTGCCCAATATAAA 57.842 42.857 0.00 0.00 46.63 1.40
117 118 2.861462 GCACGCTTTGCCCAATATAA 57.139 45.000 0.00 0.00 46.63 0.98
127 128 2.684843 GGAGCCTCTGCACGCTTTG 61.685 63.158 0.09 0.00 41.13 2.77
131 132 1.153369 TTATGGAGCCTCTGCACGC 60.153 57.895 0.00 0.00 41.13 5.34
132 133 0.176680 ACTTATGGAGCCTCTGCACG 59.823 55.000 0.00 0.00 41.13 5.34
133 134 2.012673 CAACTTATGGAGCCTCTGCAC 58.987 52.381 0.00 0.00 41.13 4.57
134 135 2.408271 CAACTTATGGAGCCTCTGCA 57.592 50.000 0.00 0.00 41.13 4.41
145 146 4.550076 TTTTGGCCCAATCCAACTTATG 57.450 40.909 0.00 0.00 45.08 1.90
146 147 4.843516 TCTTTTTGGCCCAATCCAACTTAT 59.156 37.500 0.00 0.00 45.08 1.73
149 150 2.634453 CTCTTTTTGGCCCAATCCAACT 59.366 45.455 0.00 0.00 45.08 3.16
150 151 2.368548 ACTCTTTTTGGCCCAATCCAAC 59.631 45.455 0.00 0.00 45.08 3.77
152 153 2.397044 ACTCTTTTTGGCCCAATCCA 57.603 45.000 0.00 0.00 0.00 3.41
153 154 3.161866 TGTACTCTTTTTGGCCCAATCC 58.838 45.455 0.00 0.00 0.00 3.01
154 155 4.864704 TTGTACTCTTTTTGGCCCAATC 57.135 40.909 0.00 0.00 0.00 2.67
156 157 4.027437 AGTTTGTACTCTTTTTGGCCCAA 58.973 39.130 0.00 0.00 0.00 4.12
157 158 3.383185 CAGTTTGTACTCTTTTTGGCCCA 59.617 43.478 0.00 0.00 30.26 5.36
158 159 3.243737 CCAGTTTGTACTCTTTTTGGCCC 60.244 47.826 0.00 0.00 30.26 5.80
159 160 3.243737 CCCAGTTTGTACTCTTTTTGGCC 60.244 47.826 0.00 0.00 30.26 5.36
160 161 3.798889 GCCCAGTTTGTACTCTTTTTGGC 60.799 47.826 0.00 0.00 30.26 4.52
161 162 3.243737 GGCCCAGTTTGTACTCTTTTTGG 60.244 47.826 0.00 0.00 30.26 3.28
162 163 3.550030 CGGCCCAGTTTGTACTCTTTTTG 60.550 47.826 0.00 0.00 30.26 2.44
163 164 2.621526 CGGCCCAGTTTGTACTCTTTTT 59.378 45.455 0.00 0.00 30.26 1.94
164 165 2.158726 TCGGCCCAGTTTGTACTCTTTT 60.159 45.455 0.00 0.00 30.26 2.27
165 166 1.418637 TCGGCCCAGTTTGTACTCTTT 59.581 47.619 0.00 0.00 30.26 2.52
166 167 1.053424 TCGGCCCAGTTTGTACTCTT 58.947 50.000 0.00 0.00 30.26 2.85
167 168 1.053424 TTCGGCCCAGTTTGTACTCT 58.947 50.000 0.00 0.00 30.26 3.24
168 169 1.886886 TTTCGGCCCAGTTTGTACTC 58.113 50.000 0.00 0.00 30.26 2.59
171 172 4.372656 CAAATTTTTCGGCCCAGTTTGTA 58.627 39.130 0.00 0.00 0.00 2.41
172 173 3.202097 CAAATTTTTCGGCCCAGTTTGT 58.798 40.909 0.00 0.00 0.00 2.83
173 174 2.547634 CCAAATTTTTCGGCCCAGTTTG 59.452 45.455 0.00 0.61 0.00 2.93
174 175 2.844946 CCAAATTTTTCGGCCCAGTTT 58.155 42.857 0.00 0.00 0.00 2.66
175 176 1.542328 GCCAAATTTTTCGGCCCAGTT 60.542 47.619 6.74 0.00 40.07 3.16
176 177 0.034756 GCCAAATTTTTCGGCCCAGT 59.965 50.000 6.74 0.00 40.07 4.00
177 178 2.839629 GCCAAATTTTTCGGCCCAG 58.160 52.632 6.74 0.00 40.07 4.45
184 185 3.004944 TGTCTGTACCGGCCAAATTTTTC 59.995 43.478 0.00 0.00 0.00 2.29
186 187 2.588620 TGTCTGTACCGGCCAAATTTT 58.411 42.857 0.00 0.00 0.00 1.82
188 189 2.507407 ATGTCTGTACCGGCCAAATT 57.493 45.000 0.00 0.00 0.00 1.82
189 190 2.507407 AATGTCTGTACCGGCCAAAT 57.493 45.000 0.00 0.00 0.00 2.32
191 192 2.616001 GGTAAATGTCTGTACCGGCCAA 60.616 50.000 0.00 0.00 30.94 4.52
192 193 1.065998 GGTAAATGTCTGTACCGGCCA 60.066 52.381 0.00 0.00 30.94 5.36
197 198 1.660167 GCCCGGTAAATGTCTGTACC 58.340 55.000 0.00 0.00 37.08 3.34
198 199 1.660167 GGCCCGGTAAATGTCTGTAC 58.340 55.000 0.00 0.00 0.00 2.90
199 200 0.542805 GGGCCCGGTAAATGTCTGTA 59.457 55.000 5.69 0.00 0.00 2.74
200 201 1.301954 GGGCCCGGTAAATGTCTGT 59.698 57.895 5.69 0.00 0.00 3.41
201 202 0.748005 CTGGGCCCGGTAAATGTCTG 60.748 60.000 23.90 0.00 0.00 3.51
202 203 1.607612 CTGGGCCCGGTAAATGTCT 59.392 57.895 23.90 0.00 0.00 3.41
203 204 1.453197 CCTGGGCCCGGTAAATGTC 60.453 63.158 29.35 0.00 0.00 3.06
204 205 2.680965 CCTGGGCCCGGTAAATGT 59.319 61.111 29.35 0.00 0.00 2.71
205 206 2.833121 GCCTGGGCCCGGTAAATG 60.833 66.667 29.35 14.49 34.56 2.32
214 215 4.554036 GTCCATCTCGCCTGGGCC 62.554 72.222 5.99 0.00 37.98 5.80
215 216 4.899239 CGTCCATCTCGCCTGGGC 62.899 72.222 0.82 0.82 34.95 5.36
216 217 4.227134 CCGTCCATCTCGCCTGGG 62.227 72.222 0.00 0.00 34.36 4.45
217 218 2.032860 ATTCCGTCCATCTCGCCTGG 62.033 60.000 0.00 0.00 34.93 4.45
218 219 0.179073 AATTCCGTCCATCTCGCCTG 60.179 55.000 0.00 0.00 0.00 4.85
219 220 0.105039 GAATTCCGTCCATCTCGCCT 59.895 55.000 0.00 0.00 0.00 5.52
220 221 1.215655 CGAATTCCGTCCATCTCGCC 61.216 60.000 0.00 0.00 0.00 5.54
221 222 0.248907 TCGAATTCCGTCCATCTCGC 60.249 55.000 0.00 0.00 39.75 5.03
222 223 1.478137 GTCGAATTCCGTCCATCTCG 58.522 55.000 0.00 0.00 39.75 4.04
223 224 1.854227 GGTCGAATTCCGTCCATCTC 58.146 55.000 0.00 0.00 44.16 2.75
224 225 0.102481 CGGTCGAATTCCGTCCATCT 59.898 55.000 4.86 0.00 44.82 2.90
225 226 0.101759 TCGGTCGAATTCCGTCCATC 59.898 55.000 12.10 0.00 44.82 3.51
226 227 0.533491 TTCGGTCGAATTCCGTCCAT 59.467 50.000 12.10 0.00 44.82 3.41
229 230 2.669434 TGATTTTCGGTCGAATTCCGTC 59.331 45.455 12.10 4.11 46.86 4.79
230 231 2.690786 TGATTTTCGGTCGAATTCCGT 58.309 42.857 12.10 0.00 46.86 4.69
233 234 5.683743 TGTGTTTTGATTTTCGGTCGAATTC 59.316 36.000 6.63 7.83 33.79 2.17
237 238 3.872182 TCTGTGTTTTGATTTTCGGTCGA 59.128 39.130 0.00 0.00 0.00 4.20
238 239 4.025229 TCTCTGTGTTTTGATTTTCGGTCG 60.025 41.667 0.00 0.00 0.00 4.79
239 240 5.418310 TCTCTGTGTTTTGATTTTCGGTC 57.582 39.130 0.00 0.00 0.00 4.79
240 241 5.588648 TCTTCTCTGTGTTTTGATTTTCGGT 59.411 36.000 0.00 0.00 0.00 4.69
241 242 6.060028 TCTTCTCTGTGTTTTGATTTTCGG 57.940 37.500 0.00 0.00 0.00 4.30
243 244 8.131100 TGACATCTTCTCTGTGTTTTGATTTTC 58.869 33.333 0.00 0.00 0.00 2.29
244 245 7.999679 TGACATCTTCTCTGTGTTTTGATTTT 58.000 30.769 0.00 0.00 0.00 1.82
245 246 7.572523 TGACATCTTCTCTGTGTTTTGATTT 57.427 32.000 0.00 0.00 0.00 2.17
246 247 7.309012 CCATGACATCTTCTCTGTGTTTTGATT 60.309 37.037 0.00 0.00 0.00 2.57
247 248 6.150641 CCATGACATCTTCTCTGTGTTTTGAT 59.849 38.462 0.00 0.00 0.00 2.57
249 250 5.335426 CCCATGACATCTTCTCTGTGTTTTG 60.335 44.000 0.00 0.00 0.00 2.44
250 251 4.763793 CCCATGACATCTTCTCTGTGTTTT 59.236 41.667 0.00 0.00 0.00 2.43
251 252 4.330250 CCCATGACATCTTCTCTGTGTTT 58.670 43.478 0.00 0.00 0.00 2.83
252 253 3.307975 CCCCATGACATCTTCTCTGTGTT 60.308 47.826 0.00 0.00 0.00 3.32
254 255 2.915349 CCCCATGACATCTTCTCTGTG 58.085 52.381 0.00 0.00 0.00 3.66
255 256 1.211457 GCCCCATGACATCTTCTCTGT 59.789 52.381 0.00 0.00 0.00 3.41
256 257 1.211212 TGCCCCATGACATCTTCTCTG 59.789 52.381 0.00 0.00 0.00 3.35
257 258 1.489649 CTGCCCCATGACATCTTCTCT 59.510 52.381 0.00 0.00 0.00 3.10
260 261 1.747355 CAACTGCCCCATGACATCTTC 59.253 52.381 0.00 0.00 0.00 2.87
261 262 1.617804 CCAACTGCCCCATGACATCTT 60.618 52.381 0.00 0.00 0.00 2.40
262 263 0.033796 CCAACTGCCCCATGACATCT 60.034 55.000 0.00 0.00 0.00 2.90
263 264 1.039233 CCCAACTGCCCCATGACATC 61.039 60.000 0.00 0.00 0.00 3.06
264 265 1.000739 CCCAACTGCCCCATGACAT 59.999 57.895 0.00 0.00 0.00 3.06
265 266 2.440147 CCCAACTGCCCCATGACA 59.560 61.111 0.00 0.00 0.00 3.58
266 267 2.362889 CCCCAACTGCCCCATGAC 60.363 66.667 0.00 0.00 0.00 3.06
268 269 2.681064 CACCCCAACTGCCCCATG 60.681 66.667 0.00 0.00 0.00 3.66
269 270 3.996621 CCACCCCAACTGCCCCAT 61.997 66.667 0.00 0.00 0.00 4.00
271 272 4.366684 CTCCACCCCAACTGCCCC 62.367 72.222 0.00 0.00 0.00 5.80
272 273 4.366684 CCTCCACCCCAACTGCCC 62.367 72.222 0.00 0.00 0.00 5.36
273 274 4.366684 CCCTCCACCCCAACTGCC 62.367 72.222 0.00 0.00 0.00 4.85
274 275 3.256960 TCCCTCCACCCCAACTGC 61.257 66.667 0.00 0.00 0.00 4.40
275 276 2.606587 CCTCCCTCCACCCCAACTG 61.607 68.421 0.00 0.00 0.00 3.16
276 277 2.204151 CCTCCCTCCACCCCAACT 60.204 66.667 0.00 0.00 0.00 3.16
277 278 3.339093 CCCTCCCTCCACCCCAAC 61.339 72.222 0.00 0.00 0.00 3.77
278 279 3.547737 TCCCTCCCTCCACCCCAA 61.548 66.667 0.00 0.00 0.00 4.12
279 280 4.024984 CTCCCTCCCTCCACCCCA 62.025 72.222 0.00 0.00 0.00 4.96
280 281 4.825679 CCTCCCTCCCTCCACCCC 62.826 77.778 0.00 0.00 0.00 4.95
282 283 4.026357 ACCCTCCCTCCCTCCACC 62.026 72.222 0.00 0.00 0.00 4.61
283 284 2.365768 GACCCTCCCTCCCTCCAC 60.366 72.222 0.00 0.00 0.00 4.02
284 285 3.695825 GGACCCTCCCTCCCTCCA 61.696 72.222 0.00 0.00 0.00 3.86
285 286 3.369388 AGGACCCTCCCTCCCTCC 61.369 72.222 0.00 0.00 37.19 4.30
286 287 2.041405 CAGGACCCTCCCTCCCTC 60.041 72.222 0.00 0.00 37.19 4.30
288 289 4.825679 CCCAGGACCCTCCCTCCC 62.826 77.778 0.00 0.00 37.19 4.30
297 298 3.009115 TACAGCTGGCCCAGGACC 61.009 66.667 19.93 0.00 31.21 4.46
298 299 2.586792 CTACAGCTGGCCCAGGAC 59.413 66.667 19.93 0.00 31.21 3.85
299 300 2.688666 CCTACAGCTGGCCCAGGA 60.689 66.667 19.93 0.00 31.21 3.86
300 301 2.262774 CTTCCTACAGCTGGCCCAGG 62.263 65.000 19.93 17.47 31.21 4.45
301 302 1.222936 CTTCCTACAGCTGGCCCAG 59.777 63.158 19.93 6.32 34.12 4.45
302 303 2.300967 CCTTCCTACAGCTGGCCCA 61.301 63.158 19.93 0.00 0.00 5.36
303 304 1.562672 TTCCTTCCTACAGCTGGCCC 61.563 60.000 19.93 0.00 0.00 5.80
304 305 0.548510 ATTCCTTCCTACAGCTGGCC 59.451 55.000 19.93 0.00 0.00 5.36
305 306 1.210478 TCATTCCTTCCTACAGCTGGC 59.790 52.381 19.93 0.00 0.00 4.85
307 308 3.736433 CGAGTCATTCCTTCCTACAGCTG 60.736 52.174 13.48 13.48 0.00 4.24
308 309 2.428890 CGAGTCATTCCTTCCTACAGCT 59.571 50.000 0.00 0.00 0.00 4.24
309 310 2.482142 CCGAGTCATTCCTTCCTACAGC 60.482 54.545 0.00 0.00 0.00 4.40
310 311 2.101582 CCCGAGTCATTCCTTCCTACAG 59.898 54.545 0.00 0.00 0.00 2.74
312 313 1.413077 CCCCGAGTCATTCCTTCCTAC 59.587 57.143 0.00 0.00 0.00 3.18
313 314 1.691482 CCCCCGAGTCATTCCTTCCTA 60.691 57.143 0.00 0.00 0.00 2.94
314 315 0.983378 CCCCCGAGTCATTCCTTCCT 60.983 60.000 0.00 0.00 0.00 3.36
315 316 0.981277 TCCCCCGAGTCATTCCTTCC 60.981 60.000 0.00 0.00 0.00 3.46
316 317 0.466124 CTCCCCCGAGTCATTCCTTC 59.534 60.000 0.00 0.00 0.00 3.46
318 319 1.383248 CCTCCCCCGAGTCATTCCT 60.383 63.158 0.00 0.00 33.93 3.36
319 320 1.689582 ACCTCCCCCGAGTCATTCC 60.690 63.158 0.00 0.00 33.93 3.01
320 321 1.522569 CACCTCCCCCGAGTCATTC 59.477 63.158 0.00 0.00 33.93 2.67
321 322 2.670148 GCACCTCCCCCGAGTCATT 61.670 63.158 0.00 0.00 33.93 2.57
322 323 3.083997 GCACCTCCCCCGAGTCAT 61.084 66.667 0.00 0.00 33.93 3.06
329 330 3.682292 GATCACGTGCACCTCCCCC 62.682 68.421 11.67 0.00 0.00 5.40
331 332 2.125106 GGATCACGTGCACCTCCC 60.125 66.667 11.67 1.97 0.00 4.30
332 333 2.125106 GGGATCACGTGCACCTCC 60.125 66.667 22.83 18.59 0.00 4.30
333 334 2.125106 GGGGATCACGTGCACCTC 60.125 66.667 22.83 18.45 0.00 3.85
334 335 2.469465 CTTGGGGATCACGTGCACCT 62.469 60.000 22.83 0.00 0.00 4.00
337 338 1.003839 GACTTGGGGATCACGTGCA 60.004 57.895 11.67 0.00 0.00 4.57
338 339 1.745489 GGACTTGGGGATCACGTGC 60.745 63.158 11.67 0.00 0.00 5.34
339 340 0.391661 CTGGACTTGGGGATCACGTG 60.392 60.000 9.94 9.94 0.00 4.49
340 341 0.544357 TCTGGACTTGGGGATCACGT 60.544 55.000 0.00 0.00 0.00 4.49
341 342 0.833287 ATCTGGACTTGGGGATCACG 59.167 55.000 0.00 0.00 0.00 4.35
342 343 1.748591 GCATCTGGACTTGGGGATCAC 60.749 57.143 0.00 0.00 0.00 3.06
343 344 0.548031 GCATCTGGACTTGGGGATCA 59.452 55.000 0.00 0.00 0.00 2.92
344 345 0.179006 GGCATCTGGACTTGGGGATC 60.179 60.000 0.00 0.00 0.00 3.36
345 346 1.649271 GGGCATCTGGACTTGGGGAT 61.649 60.000 0.00 0.00 0.00 3.85
346 347 2.308722 GGGCATCTGGACTTGGGGA 61.309 63.158 0.00 0.00 0.00 4.81
348 349 2.124570 CGGGCATCTGGACTTGGG 60.125 66.667 0.00 0.00 0.00 4.12
350 351 3.197790 CGCGGGCATCTGGACTTG 61.198 66.667 0.00 0.00 0.00 3.16
371 372 4.807039 CTAACCACGCGTCCCCCG 62.807 72.222 9.86 0.00 40.40 5.73
373 374 2.433664 CACTAACCACGCGTCCCC 60.434 66.667 9.86 0.00 0.00 4.81
374 375 1.005867 TTCACTAACCACGCGTCCC 60.006 57.895 9.86 0.00 0.00 4.46
375 376 1.012486 CCTTCACTAACCACGCGTCC 61.012 60.000 9.86 0.00 0.00 4.79
376 377 1.012486 CCCTTCACTAACCACGCGTC 61.012 60.000 9.86 0.00 0.00 5.19
378 379 2.388232 GCCCTTCACTAACCACGCG 61.388 63.158 3.53 3.53 0.00 6.01
379 380 2.388232 CGCCCTTCACTAACCACGC 61.388 63.158 0.00 0.00 0.00 5.34
380 381 2.388232 GCGCCCTTCACTAACCACG 61.388 63.158 0.00 0.00 0.00 4.94
381 382 2.388232 CGCGCCCTTCACTAACCAC 61.388 63.158 0.00 0.00 0.00 4.16
382 383 2.047655 CGCGCCCTTCACTAACCA 60.048 61.111 0.00 0.00 0.00 3.67
383 384 2.047560 ACGCGCCCTTCACTAACC 60.048 61.111 5.73 0.00 0.00 2.85
384 385 1.373748 TCACGCGCCCTTCACTAAC 60.374 57.895 5.73 0.00 0.00 2.34
385 386 1.373748 GTCACGCGCCCTTCACTAA 60.374 57.895 5.73 0.00 0.00 2.24
388 389 1.153628 ATAGTCACGCGCCCTTCAC 60.154 57.895 5.73 0.00 0.00 3.18
389 390 1.153647 CATAGTCACGCGCCCTTCA 60.154 57.895 5.73 0.00 0.00 3.02
393 394 1.949631 GCTACATAGTCACGCGCCC 60.950 63.158 5.73 0.00 0.00 6.13
396 397 1.131771 CCATGCTACATAGTCACGCG 58.868 55.000 3.53 3.53 0.00 6.01
398 399 2.385315 CGTCCATGCTACATAGTCACG 58.615 52.381 0.00 0.00 0.00 4.35
400 401 1.068588 GCCGTCCATGCTACATAGTCA 59.931 52.381 0.00 0.00 0.00 3.41
402 403 0.032130 CGCCGTCCATGCTACATAGT 59.968 55.000 0.00 0.00 0.00 2.12
403 404 0.032130 ACGCCGTCCATGCTACATAG 59.968 55.000 0.00 0.00 0.00 2.23
404 405 0.249280 CACGCCGTCCATGCTACATA 60.249 55.000 0.00 0.00 0.00 2.29
406 407 2.125713 CACGCCGTCCATGCTACA 60.126 61.111 0.00 0.00 0.00 2.74
407 408 2.890474 CCACGCCGTCCATGCTAC 60.890 66.667 0.00 0.00 0.00 3.58
410 411 4.856801 ATCCCACGCCGTCCATGC 62.857 66.667 0.00 0.00 0.00 4.06
411 412 2.896854 CATCCCACGCCGTCCATG 60.897 66.667 0.00 0.00 0.00 3.66
412 413 4.175337 CCATCCCACGCCGTCCAT 62.175 66.667 0.00 0.00 0.00 3.41
415 416 3.463585 TACCCATCCCACGCCGTC 61.464 66.667 0.00 0.00 0.00 4.79
416 417 3.777910 GTACCCATCCCACGCCGT 61.778 66.667 0.00 0.00 0.00 5.68
418 419 0.746923 GAAAGTACCCATCCCACGCC 60.747 60.000 0.00 0.00 0.00 5.68
419 420 0.746923 GGAAAGTACCCATCCCACGC 60.747 60.000 0.00 0.00 0.00 5.34
422 423 3.660669 AGAAAAGGAAAGTACCCATCCCA 59.339 43.478 5.76 0.00 33.55 4.37
423 424 4.017126 CAGAAAAGGAAAGTACCCATCCC 58.983 47.826 5.76 0.00 33.55 3.85
424 425 4.017126 CCAGAAAAGGAAAGTACCCATCC 58.983 47.826 1.84 1.84 0.00 3.51
425 426 3.444034 GCCAGAAAAGGAAAGTACCCATC 59.556 47.826 0.00 0.00 0.00 3.51
426 427 3.431415 GCCAGAAAAGGAAAGTACCCAT 58.569 45.455 0.00 0.00 0.00 4.00
429 430 1.810755 CGGCCAGAAAAGGAAAGTACC 59.189 52.381 2.24 0.00 0.00 3.34
430 431 2.774687 TCGGCCAGAAAAGGAAAGTAC 58.225 47.619 2.24 0.00 0.00 2.73
431 432 3.408634 CTTCGGCCAGAAAAGGAAAGTA 58.591 45.455 2.24 0.00 38.57 2.24
432 433 2.230660 CTTCGGCCAGAAAAGGAAAGT 58.769 47.619 2.24 0.00 38.57 2.66
433 434 1.541588 CCTTCGGCCAGAAAAGGAAAG 59.458 52.381 14.94 1.69 41.78 2.62
434 435 1.616159 CCTTCGGCCAGAAAAGGAAA 58.384 50.000 14.94 0.00 41.78 3.13
435 436 0.251165 CCCTTCGGCCAGAAAAGGAA 60.251 55.000 19.61 5.93 41.78 3.36
436 437 1.378762 CCCTTCGGCCAGAAAAGGA 59.621 57.895 19.61 0.00 41.78 3.36
437 438 1.678970 CCCCTTCGGCCAGAAAAGG 60.679 63.158 2.24 9.79 38.57 3.11
438 439 0.960861 GTCCCCTTCGGCCAGAAAAG 60.961 60.000 2.24 0.01 38.57 2.27
441 442 3.327404 GGTCCCCTTCGGCCAGAA 61.327 66.667 2.24 6.71 37.31 3.02
443 444 4.101448 CTGGTCCCCTTCGGCCAG 62.101 72.222 2.24 0.00 44.40 4.85
446 447 4.410400 CACCTGGTCCCCTTCGGC 62.410 72.222 0.00 0.00 0.00 5.54
447 448 4.410400 GCACCTGGTCCCCTTCGG 62.410 72.222 0.00 0.00 0.00 4.30
449 450 0.609406 GAAAGCACCTGGTCCCCTTC 60.609 60.000 0.00 0.00 0.00 3.46
450 451 1.460699 GAAAGCACCTGGTCCCCTT 59.539 57.895 0.00 0.00 0.00 3.95
451 452 2.539081 GGAAAGCACCTGGTCCCCT 61.539 63.158 0.00 0.00 0.00 4.79
453 454 0.919710 ATAGGAAAGCACCTGGTCCC 59.080 55.000 0.00 0.00 40.81 4.46
454 455 2.808906 AATAGGAAAGCACCTGGTCC 57.191 50.000 0.00 0.00 40.81 4.46
455 456 3.193479 CCAAAATAGGAAAGCACCTGGTC 59.807 47.826 0.00 0.00 40.81 4.02
456 457 3.165071 CCAAAATAGGAAAGCACCTGGT 58.835 45.455 0.00 0.00 40.81 4.00
457 458 2.094026 GCCAAAATAGGAAAGCACCTGG 60.094 50.000 7.26 0.00 40.81 4.45
459 460 2.179427 GGCCAAAATAGGAAAGCACCT 58.821 47.619 0.00 0.00 43.32 4.00
461 462 1.135112 CCGGCCAAAATAGGAAAGCAC 60.135 52.381 2.24 0.00 0.00 4.40
462 463 1.181786 CCGGCCAAAATAGGAAAGCA 58.818 50.000 2.24 0.00 0.00 3.91
463 464 1.134367 GACCGGCCAAAATAGGAAAGC 59.866 52.381 0.00 0.00 0.00 3.51
466 467 1.027792 GCGACCGGCCAAAATAGGAA 61.028 55.000 0.00 0.00 34.80 3.36
468 469 1.436983 GAGCGACCGGCCAAAATAGG 61.437 60.000 0.00 0.00 45.17 2.57
471 472 3.124921 CGAGCGACCGGCCAAAAT 61.125 61.111 0.00 0.00 45.17 1.82
480 481 3.753070 CTAGCGTTCCCGAGCGACC 62.753 68.421 5.07 0.00 37.19 4.79
481 482 2.278013 CTAGCGTTCCCGAGCGAC 60.278 66.667 5.07 0.00 37.19 5.19
482 483 4.189188 GCTAGCGTTCCCGAGCGA 62.189 66.667 0.00 0.00 37.19 4.93
483 484 4.492160 TGCTAGCGTTCCCGAGCG 62.492 66.667 10.77 0.00 36.89 5.03
484 485 2.583593 CTGCTAGCGTTCCCGAGC 60.584 66.667 10.77 0.00 35.24 5.03
485 486 2.105128 CCTGCTAGCGTTCCCGAG 59.895 66.667 10.77 0.00 35.63 4.63
486 487 2.361992 TCCTGCTAGCGTTCCCGA 60.362 61.111 10.77 0.00 35.63 5.14
487 488 2.202756 GTCCTGCTAGCGTTCCCG 60.203 66.667 10.77 0.00 37.07 5.14
488 489 0.107654 ATTGTCCTGCTAGCGTTCCC 60.108 55.000 10.77 0.00 0.00 3.97
489 490 1.009829 CATTGTCCTGCTAGCGTTCC 58.990 55.000 10.77 0.00 0.00 3.62
490 491 0.375106 GCATTGTCCTGCTAGCGTTC 59.625 55.000 10.77 1.28 39.12 3.95
492 493 1.811266 CGCATTGTCCTGCTAGCGT 60.811 57.895 10.77 0.00 40.06 5.07
494 495 1.717937 CACGCATTGTCCTGCTAGC 59.282 57.895 8.10 8.10 40.06 3.42
495 496 0.742281 AGCACGCATTGTCCTGCTAG 60.742 55.000 3.84 0.00 38.22 3.42
496 497 0.321564 AAGCACGCATTGTCCTGCTA 60.322 50.000 5.61 0.00 39.08 3.49
497 498 1.601759 AAGCACGCATTGTCCTGCT 60.602 52.632 0.00 0.00 41.83 4.24
498 499 1.443194 CAAGCACGCATTGTCCTGC 60.443 57.895 0.00 0.00 38.81 4.85
500 501 0.321564 TAGCAAGCACGCATTGTCCT 60.322 50.000 0.00 0.00 0.00 3.85
504 505 0.247419 CGTCTAGCAAGCACGCATTG 60.247 55.000 0.00 0.00 0.00 2.82
505 506 0.670546 ACGTCTAGCAAGCACGCATT 60.671 50.000 3.73 0.00 37.02 3.56
506 507 1.079819 ACGTCTAGCAAGCACGCAT 60.080 52.632 3.73 0.00 37.02 4.73
507 508 2.021584 CACGTCTAGCAAGCACGCA 61.022 57.895 3.73 0.00 37.02 5.24
508 509 1.945776 GACACGTCTAGCAAGCACGC 61.946 60.000 3.73 0.00 37.02 5.34
509 510 1.344942 GGACACGTCTAGCAAGCACG 61.345 60.000 2.45 2.45 39.48 5.34
510 511 1.014564 GGGACACGTCTAGCAAGCAC 61.015 60.000 0.00 0.00 0.00 4.40
511 512 1.292223 GGGACACGTCTAGCAAGCA 59.708 57.895 0.00 0.00 0.00 3.91
512 513 0.320421 TTGGGACACGTCTAGCAAGC 60.320 55.000 0.00 0.00 39.29 4.01
513 514 2.386661 ATTGGGACACGTCTAGCAAG 57.613 50.000 0.00 0.00 39.29 4.01
515 516 2.829720 ACTTATTGGGACACGTCTAGCA 59.170 45.455 0.00 0.00 39.29 3.49
517 518 6.570692 ACATTACTTATTGGGACACGTCTAG 58.429 40.000 0.00 0.00 39.29 2.43
520 521 5.163794 CCAACATTACTTATTGGGACACGTC 60.164 44.000 0.00 0.00 39.29 4.34
521 522 4.698304 CCAACATTACTTATTGGGACACGT 59.302 41.667 0.00 0.00 39.29 4.49
522 523 4.938832 TCCAACATTACTTATTGGGACACG 59.061 41.667 2.58 0.00 42.70 4.49
523 524 6.828785 AGATCCAACATTACTTATTGGGACAC 59.171 38.462 2.58 0.00 42.70 3.67
525 526 6.486993 GGAGATCCAACATTACTTATTGGGAC 59.513 42.308 2.58 0.00 42.70 4.46
526 527 6.159575 TGGAGATCCAACATTACTTATTGGGA 59.840 38.462 0.00 0.00 44.35 4.37
527 528 6.364701 TGGAGATCCAACATTACTTATTGGG 58.635 40.000 0.00 0.00 44.35 4.12
553 554 1.308998 GTCCATGGCCCAATCGTAAG 58.691 55.000 6.96 0.00 0.00 2.34
555 556 0.180171 CTGTCCATGGCCCAATCGTA 59.820 55.000 6.96 0.00 0.00 3.43
560 561 2.141011 CTGGTCTGTCCATGGCCCAA 62.141 60.000 6.96 0.00 46.12 4.12
561 562 2.531428 TGGTCTGTCCATGGCCCA 60.531 61.111 6.96 5.27 41.93 5.36
562 563 2.273449 CTGGTCTGTCCATGGCCC 59.727 66.667 6.96 0.00 46.12 5.80
563 564 2.439156 GCTGGTCTGTCCATGGCC 60.439 66.667 6.96 2.14 46.12 5.36
564 565 2.439156 GGCTGGTCTGTCCATGGC 60.439 66.667 6.96 2.72 46.12 4.40
565 566 2.124983 CGGCTGGTCTGTCCATGG 60.125 66.667 4.97 4.97 46.12 3.66
569 570 1.216710 CTCTTCGGCTGGTCTGTCC 59.783 63.158 0.00 0.00 0.00 4.02
571 572 1.536943 GGACTCTTCGGCTGGTCTGT 61.537 60.000 0.00 0.00 0.00 3.41
572 573 1.216710 GGACTCTTCGGCTGGTCTG 59.783 63.158 0.00 0.00 0.00 3.51
574 575 1.216710 CTGGACTCTTCGGCTGGTC 59.783 63.158 0.00 0.00 0.00 4.02
575 576 1.534235 ACTGGACTCTTCGGCTGGT 60.534 57.895 0.00 0.00 0.00 4.00
576 577 1.079543 CACTGGACTCTTCGGCTGG 60.080 63.158 0.00 0.00 0.00 4.85
577 578 1.739562 GCACTGGACTCTTCGGCTG 60.740 63.158 0.00 0.00 0.00 4.85
578 579 1.476007 AAGCACTGGACTCTTCGGCT 61.476 55.000 0.00 0.00 0.00 5.52
580 581 1.001406 AGAAAGCACTGGACTCTTCGG 59.999 52.381 0.00 0.00 0.00 4.30
581 582 2.288457 TGAGAAAGCACTGGACTCTTCG 60.288 50.000 0.00 0.00 0.00 3.79
582 583 3.393089 TGAGAAAGCACTGGACTCTTC 57.607 47.619 0.00 0.00 0.00 2.87
584 585 3.582208 AGATTGAGAAAGCACTGGACTCT 59.418 43.478 0.00 0.00 0.00 3.24
587 588 4.826556 ACTAGATTGAGAAAGCACTGGAC 58.173 43.478 0.00 0.00 0.00 4.02
588 589 4.081420 GGACTAGATTGAGAAAGCACTGGA 60.081 45.833 0.00 0.00 0.00 3.86
589 590 4.081198 AGGACTAGATTGAGAAAGCACTGG 60.081 45.833 0.00 0.00 0.00 4.00
590 591 5.083533 AGGACTAGATTGAGAAAGCACTG 57.916 43.478 0.00 0.00 0.00 3.66
591 592 5.337975 GGAAGGACTAGATTGAGAAAGCACT 60.338 44.000 0.00 0.00 0.00 4.40
592 593 4.873259 GGAAGGACTAGATTGAGAAAGCAC 59.127 45.833 0.00 0.00 0.00 4.40
593 594 4.080863 GGGAAGGACTAGATTGAGAAAGCA 60.081 45.833 0.00 0.00 0.00 3.91
594 595 4.163268 AGGGAAGGACTAGATTGAGAAAGC 59.837 45.833 0.00 0.00 0.00 3.51
595 596 5.451242 CGAGGGAAGGACTAGATTGAGAAAG 60.451 48.000 0.00 0.00 0.00 2.62
596 597 4.402793 CGAGGGAAGGACTAGATTGAGAAA 59.597 45.833 0.00 0.00 0.00 2.52
597 598 3.954904 CGAGGGAAGGACTAGATTGAGAA 59.045 47.826 0.00 0.00 0.00 2.87
599 600 2.625790 CCGAGGGAAGGACTAGATTGAG 59.374 54.545 0.00 0.00 0.00 3.02
600 601 2.024273 ACCGAGGGAAGGACTAGATTGA 60.024 50.000 0.00 0.00 0.00 2.57
603 604 2.850695 AACCGAGGGAAGGACTAGAT 57.149 50.000 0.00 0.00 0.00 1.98
605 606 2.094130 GTGAAACCGAGGGAAGGACTAG 60.094 54.545 0.00 0.00 0.00 2.57
607 608 0.685660 GTGAAACCGAGGGAAGGACT 59.314 55.000 0.00 0.00 0.00 3.85
608 609 3.228499 GTGAAACCGAGGGAAGGAC 57.772 57.895 0.00 0.00 0.00 3.85
622 623 3.704800 TTTGGGTGATGTATCGGTGAA 57.295 42.857 0.00 0.00 0.00 3.18
623 624 3.340034 GTTTTGGGTGATGTATCGGTGA 58.660 45.455 0.00 0.00 0.00 4.02
624 625 2.422127 GGTTTTGGGTGATGTATCGGTG 59.578 50.000 0.00 0.00 0.00 4.94
625 626 2.040545 TGGTTTTGGGTGATGTATCGGT 59.959 45.455 0.00 0.00 0.00 4.69
626 627 2.717390 TGGTTTTGGGTGATGTATCGG 58.283 47.619 0.00 0.00 0.00 4.18
627 628 4.024048 GCTATGGTTTTGGGTGATGTATCG 60.024 45.833 0.00 0.00 0.00 2.92
629 630 4.215109 GGCTATGGTTTTGGGTGATGTAT 58.785 43.478 0.00 0.00 0.00 2.29
631 632 2.456577 GGCTATGGTTTTGGGTGATGT 58.543 47.619 0.00 0.00 0.00 3.06
633 634 1.005450 ACGGCTATGGTTTTGGGTGAT 59.995 47.619 0.00 0.00 0.00 3.06
634 635 0.402504 ACGGCTATGGTTTTGGGTGA 59.597 50.000 0.00 0.00 0.00 4.02
635 636 0.808755 GACGGCTATGGTTTTGGGTG 59.191 55.000 0.00 0.00 0.00 4.61
637 638 1.988834 GCGACGGCTATGGTTTTGGG 61.989 60.000 0.00 0.00 35.83 4.12
638 639 1.427819 GCGACGGCTATGGTTTTGG 59.572 57.895 0.00 0.00 35.83 3.28
639 640 1.427819 GGCGACGGCTATGGTTTTG 59.572 57.895 15.00 0.00 39.81 2.44
668 669 3.319198 GGTGGCTCCGGAAGTGGA 61.319 66.667 5.23 0.00 36.37 4.02
671 672 2.457323 TTTGGGTGGCTCCGGAAGT 61.457 57.895 5.23 0.00 37.00 3.01
674 675 3.961414 GGTTTGGGTGGCTCCGGA 61.961 66.667 2.93 2.93 37.00 5.14
679 680 3.494254 TGGTCGGTTTGGGTGGCT 61.494 61.111 0.00 0.00 0.00 4.75
681 682 0.321298 CTAGTGGTCGGTTTGGGTGG 60.321 60.000 0.00 0.00 0.00 4.61
682 683 0.682852 TCTAGTGGTCGGTTTGGGTG 59.317 55.000 0.00 0.00 0.00 4.61
683 684 0.683412 GTCTAGTGGTCGGTTTGGGT 59.317 55.000 0.00 0.00 0.00 4.51
687 693 1.416243 TGGTGTCTAGTGGTCGGTTT 58.584 50.000 0.00 0.00 0.00 3.27
699 705 2.660064 GGAGGTCGGCATGGTGTCT 61.660 63.158 0.00 0.00 0.00 3.41
700 706 2.125106 GGAGGTCGGCATGGTGTC 60.125 66.667 0.00 0.00 0.00 3.67
702 708 2.187946 GAGGAGGTCGGCATGGTG 59.812 66.667 0.00 0.00 0.00 4.17
783 7737 1.352083 TCTTCAGCAAGTGGTAGCCT 58.648 50.000 0.00 0.00 0.00 4.58
816 7770 2.003548 GGGGATCTCCTTGGTGCCT 61.004 63.158 3.62 0.00 35.95 4.75
852 7806 1.002134 CACCCGGAACAGGCAAGAT 60.002 57.895 0.73 0.00 0.00 2.40
860 7814 4.974438 AGCCTCCCACCCGGAACA 62.974 66.667 0.73 0.00 41.40 3.18
977 7931 5.364778 TGAATTTTTCCTTCACAGTCTCGA 58.635 37.500 0.00 0.00 0.00 4.04
984 7938 5.527951 CCGAACATGAATTTTTCCTTCACA 58.472 37.500 0.00 0.00 35.57 3.58
992 7946 6.640907 GTCAAGTAAGCCGAACATGAATTTTT 59.359 34.615 0.00 0.00 0.00 1.94
1006 7960 1.818674 CCCATGTTGGTCAAGTAAGCC 59.181 52.381 0.00 0.00 35.17 4.35
1089 8043 2.516227 TCATAAATCCGCCAAACCCA 57.484 45.000 0.00 0.00 0.00 4.51
1146 8100 1.697432 ACCTTGACCGTGAAGGAATCA 59.303 47.619 22.06 0.00 42.44 2.57
1279 8233 4.202346 CCCACCAACTTGGAATTTGACATT 60.202 41.667 15.14 0.00 40.96 2.71
1296 8251 1.264749 CCGAGAATGTCTCCCCACCA 61.265 60.000 0.00 0.00 40.34 4.17
1299 8254 2.721167 CGCCGAGAATGTCTCCCCA 61.721 63.158 0.00 0.00 40.34 4.96
1376 8331 2.606519 TGGTGGTTCCCTCCCTCG 60.607 66.667 0.00 0.00 36.43 4.63
1408 8363 1.065491 TGGTGCCTCCATGTCATGTAC 60.065 52.381 11.84 3.25 41.93 2.90
1436 8391 4.690748 TGTACATGAAAGTAAGCAGAGCAC 59.309 41.667 0.00 0.00 0.00 4.40
1526 8481 4.087182 CCTCTCCAGGTTGTACTTGTCTA 58.913 47.826 0.00 0.00 34.60 2.59
1789 8744 5.579047 TCATGCCCTAGATTTTCTTTTCCA 58.421 37.500 0.00 0.00 0.00 3.53
1882 8842 5.704217 GCACTAATGCGTATAAGATAGCC 57.296 43.478 0.00 0.00 43.33 3.93
1909 8878 5.809562 CCTTGTGAGATCAAGACTACACATC 59.190 44.000 7.83 0.00 45.11 3.06
2038 9139 0.443869 CTCACAGCGGCACAATGTAC 59.556 55.000 1.45 0.00 0.00 2.90
2223 9333 4.202050 GCCACTACCATGTCCAAAATCATC 60.202 45.833 0.00 0.00 0.00 2.92
2224 9334 3.701040 GCCACTACCATGTCCAAAATCAT 59.299 43.478 0.00 0.00 0.00 2.45
2226 9336 3.129287 CAGCCACTACCATGTCCAAAATC 59.871 47.826 0.00 0.00 0.00 2.17
2228 9338 2.513753 CAGCCACTACCATGTCCAAAA 58.486 47.619 0.00 0.00 0.00 2.44
2229 9339 1.886222 GCAGCCACTACCATGTCCAAA 60.886 52.381 0.00 0.00 0.00 3.28
2230 9340 0.322456 GCAGCCACTACCATGTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
2264 9395 7.170998 TCGAGACTAAACTTCAAAACATTCCTC 59.829 37.037 0.00 0.00 0.00 3.71
2266 9397 7.041984 ACTCGAGACTAAACTTCAAAACATTCC 60.042 37.037 21.68 0.00 0.00 3.01
2326 9457 6.016777 AGCTTCTGGTTACAAATCTGAAACAG 60.017 38.462 0.00 0.00 0.00 3.16
2331 9462 4.973168 ACAGCTTCTGGTTACAAATCTGA 58.027 39.130 0.00 0.00 35.51 3.27
2464 9595 4.460263 TGACATCTTGGCAAGTAAACAGT 58.540 39.130 25.39 15.39 28.38 3.55
2541 9672 5.677091 GCCAGTGAATATGCAAACTACCAAG 60.677 44.000 0.00 0.00 0.00 3.61
2620 9751 6.376581 CCAGAACTAAGAAATGATCCAGCTTT 59.623 38.462 0.00 0.00 0.00 3.51
2621 9752 5.884792 CCAGAACTAAGAAATGATCCAGCTT 59.115 40.000 0.00 0.00 0.00 3.74
2631 9762 5.308237 ACAGACAGTCCCAGAACTAAGAAAT 59.692 40.000 0.00 0.00 0.00 2.17
2702 9833 5.764686 TCATTACAGCATAAGCCATAAGGTG 59.235 40.000 0.00 0.00 43.56 4.00
2703 9834 5.765182 GTCATTACAGCATAAGCCATAAGGT 59.235 40.000 0.00 0.00 43.56 3.50
2704 9835 5.106948 CGTCATTACAGCATAAGCCATAAGG 60.107 44.000 0.00 0.00 43.56 2.69
2705 9836 5.696270 TCGTCATTACAGCATAAGCCATAAG 59.304 40.000 0.00 0.00 43.56 1.73
2706 9837 5.465390 GTCGTCATTACAGCATAAGCCATAA 59.535 40.000 0.00 0.00 43.56 1.90
2707 9838 4.988540 GTCGTCATTACAGCATAAGCCATA 59.011 41.667 0.00 0.00 43.56 2.74
2708 9839 3.809832 GTCGTCATTACAGCATAAGCCAT 59.190 43.478 0.00 0.00 43.56 4.40
2709 9840 3.194861 GTCGTCATTACAGCATAAGCCA 58.805 45.455 0.00 0.00 43.56 4.75
2710 9841 2.544267 GGTCGTCATTACAGCATAAGCC 59.456 50.000 0.00 0.00 43.56 4.35
2711 9842 3.194861 TGGTCGTCATTACAGCATAAGC 58.805 45.455 0.00 0.00 42.56 3.09
2724 9855 3.450507 ACGTGTCCATGGTCGTCA 58.549 55.556 19.99 10.56 30.71 4.35
2732 9863 3.756434 CACCCATTTAAAGACGTGTCCAT 59.244 43.478 0.00 0.00 0.00 3.41
2734 9865 3.404899 TCACCCATTTAAAGACGTGTCC 58.595 45.455 0.00 0.00 0.00 4.02
2744 9875 7.174253 GTCAAGTACTGTCATTCACCCATTTAA 59.826 37.037 0.00 0.00 0.00 1.52
2763 9894 9.366216 CTATACAAAGCATGTTACTGTCAAGTA 57.634 33.333 0.21 0.00 43.63 2.24
2772 9903 9.950680 ATGCAATTACTATACAAAGCATGTTAC 57.049 29.630 0.00 0.00 43.63 2.50
2820 9951 5.316167 TGCTAGATGAGGAACACAAATTGT 58.684 37.500 0.00 0.00 41.74 2.71
2838 9969 3.935203 CTGGTACAAGAACCACATGCTAG 59.065 47.826 0.00 0.00 44.68 3.42
2874 10005 6.152661 CACACTAGAGAAGAGAAGAACCTGAT 59.847 42.308 0.00 0.00 0.00 2.90
2878 10009 4.219725 AGCACACTAGAGAAGAGAAGAACC 59.780 45.833 0.00 0.00 0.00 3.62
2883 10014 2.232452 GGCAGCACACTAGAGAAGAGAA 59.768 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.