Multiple sequence alignment - TraesCS5A01G381600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G381600 chr5A 100.000 1902 0 0 1 1902 579411227 579409326 0.000000e+00 3513.0
1 TraesCS5A01G381600 chr5A 100.000 393 0 0 2336 2728 579408892 579408500 0.000000e+00 726.0
2 TraesCS5A01G381600 chr5B 86.239 981 73 31 976 1900 565096539 565097513 0.000000e+00 1007.0
3 TraesCS5A01G381600 chr5B 90.857 350 21 5 597 936 565096191 565096539 2.480000e-125 459.0
4 TraesCS5A01G381600 chr5B 83.742 449 22 19 134 554 565095769 565096194 7.130000e-101 377.0
5 TraesCS5A01G381600 chr5B 91.549 71 6 0 1 71 166635295 166635225 6.220000e-17 99.0
6 TraesCS5A01G381600 chr5B 83.333 72 4 5 2349 2412 565097559 565097630 2.930000e-05 60.2
7 TraesCS5A01G381600 chr5D 83.294 844 56 35 994 1767 459926608 459927436 0.000000e+00 699.0
8 TraesCS5A01G381600 chr5D 90.407 344 10 4 597 939 459925907 459926228 5.400000e-117 431.0
9 TraesCS5A01G381600 chr5D 83.296 443 40 27 130 554 459925484 459925910 7.130000e-101 377.0
10 TraesCS5A01G381600 chr5D 91.429 70 6 0 2 71 40978171 40978102 2.240000e-16 97.1
11 TraesCS5A01G381600 chr4A 84.116 447 24 18 78 492 563452066 563451635 3.290000e-104 388.0
12 TraesCS5A01G381600 chr2D 93.269 208 14 0 2521 2728 5221739 5221532 9.490000e-80 307.0
13 TraesCS5A01G381600 chr2D 91.549 71 6 0 1 71 455942295 455942225 6.220000e-17 99.0
14 TraesCS5A01G381600 chr7B 92.381 210 16 0 2519 2728 374486786 374486577 1.590000e-77 300.0
15 TraesCS5A01G381600 chr6B 92.308 208 16 0 2521 2728 61208076 61207869 2.050000e-76 296.0
16 TraesCS5A01G381600 chr6B 90.141 71 7 0 1 71 665636276 665636346 2.890000e-15 93.5
17 TraesCS5A01G381600 chr1A 91.905 210 17 0 2519 2728 97866730 97866939 7.390000e-76 294.0
18 TraesCS5A01G381600 chr1B 91.866 209 17 0 2520 2728 454358129 454358337 2.660000e-75 292.0
19 TraesCS5A01G381600 chr1B 91.346 208 18 0 2521 2728 290935910 290935703 4.450000e-73 285.0
20 TraesCS5A01G381600 chr3B 94.366 71 4 0 1 71 779370477 779370547 2.870000e-20 110.0
21 TraesCS5A01G381600 chr3A 94.366 71 4 0 1 71 192847447 192847377 2.870000e-20 110.0
22 TraesCS5A01G381600 chr3D 91.026 78 7 0 2 79 614118635 614118558 3.720000e-19 106.0
23 TraesCS5A01G381600 chr7A 92.958 71 5 0 1 71 103136323 103136393 1.340000e-18 104.0
24 TraesCS5A01G381600 chr1D 92.857 70 5 0 2 71 258094179 258094110 4.810000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G381600 chr5A 579408500 579411227 2727 True 2119.500000 3513 100.000000 1 2728 2 chr5A.!!$R1 2727
1 TraesCS5A01G381600 chr5B 565095769 565097630 1861 False 475.800000 1007 86.042750 134 2412 4 chr5B.!!$F1 2278
2 TraesCS5A01G381600 chr5D 459925484 459927436 1952 False 502.333333 699 85.665667 130 1767 3 chr5D.!!$F1 1637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.027324 GCAGAAGCTCAATACAGCGC 59.973 55.0 0.0 0.0 44.82 5.92 F
931 989 0.109723 GGGAAGTGGGTTACTGCACA 59.890 55.0 0.0 0.0 38.36 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 2168 0.038166 TTGGAGAGAATGTGGCCCAC 59.962 55.0 7.01 7.01 34.56 4.61 R
2571 3067 0.171007 CAGCAGCCAAAATACGTGGG 59.829 55.0 0.00 0.00 36.58 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.482451 CTTTGTCAAAGTTTACGAAGCTTG 57.518 37.500 15.93 0.00 32.00 4.01
24 25 5.804692 TTGTCAAAGTTTACGAAGCTTGA 57.195 34.783 2.10 0.00 0.00 3.02
25 26 5.151632 TGTCAAAGTTTACGAAGCTTGAC 57.848 39.130 2.10 1.88 0.00 3.18
26 27 4.873827 TGTCAAAGTTTACGAAGCTTGACT 59.126 37.500 2.10 0.00 0.00 3.41
27 28 5.353123 TGTCAAAGTTTACGAAGCTTGACTT 59.647 36.000 2.10 3.45 42.98 3.01
28 29 6.128117 TGTCAAAGTTTACGAAGCTTGACTTT 60.128 34.615 2.10 9.31 39.29 2.66
29 30 6.482451 CAAAGTTTACGAAGCTTGACTTTG 57.518 37.500 21.42 21.42 43.93 2.77
30 31 6.431198 AAAGTTTACGAAGCTTGACTTTGA 57.569 33.333 2.10 0.00 41.75 2.69
31 32 6.619801 AAGTTTACGAAGCTTGACTTTGAT 57.380 33.333 2.10 0.00 41.75 2.57
32 33 6.229561 AGTTTACGAAGCTTGACTTTGATC 57.770 37.500 2.10 0.00 41.75 2.92
33 34 5.758296 AGTTTACGAAGCTTGACTTTGATCA 59.242 36.000 2.10 0.00 41.75 2.92
34 35 6.260050 AGTTTACGAAGCTTGACTTTGATCAA 59.740 34.615 2.10 3.38 41.75 2.57
35 36 6.612247 TTACGAAGCTTGACTTTGATCAAA 57.388 33.333 19.45 19.45 41.75 2.69
48 49 6.349973 CTTTGATCAAAGCTAATACGCAGA 57.650 37.500 29.90 1.29 40.94 4.26
49 50 5.973651 TTGATCAAAGCTAATACGCAGAG 57.026 39.130 5.45 0.00 0.00 3.35
50 51 5.011090 TGATCAAAGCTAATACGCAGAGT 57.989 39.130 0.00 0.00 0.00 3.24
51 52 6.144078 TGATCAAAGCTAATACGCAGAGTA 57.856 37.500 0.00 0.00 40.03 2.59
52 53 6.569780 TGATCAAAGCTAATACGCAGAGTAA 58.430 36.000 0.00 0.00 39.04 2.24
53 54 7.039270 TGATCAAAGCTAATACGCAGAGTAAA 58.961 34.615 0.00 0.00 39.04 2.01
54 55 7.710907 TGATCAAAGCTAATACGCAGAGTAAAT 59.289 33.333 0.00 0.00 39.04 1.40
55 56 9.193133 GATCAAAGCTAATACGCAGAGTAAATA 57.807 33.333 0.00 0.00 39.04 1.40
56 57 8.936070 TCAAAGCTAATACGCAGAGTAAATAA 57.064 30.769 0.00 0.00 39.04 1.40
57 58 9.373603 TCAAAGCTAATACGCAGAGTAAATAAA 57.626 29.630 0.00 0.00 39.04 1.40
58 59 9.638300 CAAAGCTAATACGCAGAGTAAATAAAG 57.362 33.333 0.00 0.00 39.04 1.85
59 60 9.595823 AAAGCTAATACGCAGAGTAAATAAAGA 57.404 29.630 0.00 0.00 39.04 2.52
60 61 8.576936 AGCTAATACGCAGAGTAAATAAAGAC 57.423 34.615 0.00 0.00 39.04 3.01
61 62 7.378995 AGCTAATACGCAGAGTAAATAAAGACG 59.621 37.037 0.00 0.00 39.04 4.18
62 63 6.823678 AATACGCAGAGTAAATAAAGACGG 57.176 37.500 0.00 0.00 39.04 4.79
63 64 4.445452 ACGCAGAGTAAATAAAGACGGA 57.555 40.909 0.00 0.00 0.00 4.69
64 65 4.421948 ACGCAGAGTAAATAAAGACGGAG 58.578 43.478 0.00 0.00 0.00 4.63
65 66 3.797256 CGCAGAGTAAATAAAGACGGAGG 59.203 47.826 0.00 0.00 0.00 4.30
66 67 4.120589 GCAGAGTAAATAAAGACGGAGGG 58.879 47.826 0.00 0.00 0.00 4.30
67 68 4.142004 GCAGAGTAAATAAAGACGGAGGGA 60.142 45.833 0.00 0.00 0.00 4.20
68 69 5.593010 CAGAGTAAATAAAGACGGAGGGAG 58.407 45.833 0.00 0.00 0.00 4.30
69 70 5.127356 CAGAGTAAATAAAGACGGAGGGAGT 59.873 44.000 0.00 0.00 0.00 3.85
70 71 6.320672 CAGAGTAAATAAAGACGGAGGGAGTA 59.679 42.308 0.00 0.00 0.00 2.59
71 72 6.894103 AGAGTAAATAAAGACGGAGGGAGTAA 59.106 38.462 0.00 0.00 0.00 2.24
72 73 7.564292 AGAGTAAATAAAGACGGAGGGAGTAAT 59.436 37.037 0.00 0.00 0.00 1.89
73 74 7.498443 AGTAAATAAAGACGGAGGGAGTAATG 58.502 38.462 0.00 0.00 0.00 1.90
74 75 6.555463 AAATAAAGACGGAGGGAGTAATGA 57.445 37.500 0.00 0.00 0.00 2.57
75 76 3.889520 AAAGACGGAGGGAGTAATGAC 57.110 47.619 0.00 0.00 0.00 3.06
76 77 2.526888 AGACGGAGGGAGTAATGACA 57.473 50.000 0.00 0.00 0.00 3.58
77 78 2.816411 AGACGGAGGGAGTAATGACAA 58.184 47.619 0.00 0.00 0.00 3.18
78 79 3.170717 AGACGGAGGGAGTAATGACAAA 58.829 45.455 0.00 0.00 0.00 2.83
79 80 3.195825 AGACGGAGGGAGTAATGACAAAG 59.804 47.826 0.00 0.00 0.00 2.77
80 81 2.904434 ACGGAGGGAGTAATGACAAAGT 59.096 45.455 0.00 0.00 0.00 2.66
81 82 3.056035 ACGGAGGGAGTAATGACAAAGTC 60.056 47.826 0.00 0.00 0.00 3.01
82 83 3.056107 CGGAGGGAGTAATGACAAAGTCA 60.056 47.826 1.95 1.95 46.90 3.41
92 93 1.800586 TGACAAAGTCATCGCAGAAGC 59.199 47.619 0.00 0.00 43.58 3.86
93 94 2.072298 GACAAAGTCATCGCAGAAGCT 58.928 47.619 0.00 0.00 43.58 3.74
94 95 2.072298 ACAAAGTCATCGCAGAAGCTC 58.928 47.619 0.00 0.00 43.58 4.09
95 96 2.071540 CAAAGTCATCGCAGAAGCTCA 58.928 47.619 0.00 0.00 43.58 4.26
96 97 2.462456 AAGTCATCGCAGAAGCTCAA 57.538 45.000 0.00 0.00 43.58 3.02
97 98 2.687700 AGTCATCGCAGAAGCTCAAT 57.312 45.000 0.00 0.00 43.58 2.57
98 99 3.808466 AGTCATCGCAGAAGCTCAATA 57.192 42.857 0.00 0.00 43.58 1.90
99 100 3.452474 AGTCATCGCAGAAGCTCAATAC 58.548 45.455 0.00 0.00 43.58 1.89
100 101 3.118992 AGTCATCGCAGAAGCTCAATACA 60.119 43.478 0.00 0.00 43.58 2.29
101 102 3.244814 GTCATCGCAGAAGCTCAATACAG 59.755 47.826 0.00 0.00 43.58 2.74
102 103 1.645034 TCGCAGAAGCTCAATACAGC 58.355 50.000 0.00 0.00 39.99 4.40
103 104 0.299895 CGCAGAAGCTCAATACAGCG 59.700 55.000 0.00 0.00 44.82 5.18
104 105 0.027324 GCAGAAGCTCAATACAGCGC 59.973 55.000 0.00 0.00 44.82 5.92
105 106 0.299895 CAGAAGCTCAATACAGCGCG 59.700 55.000 0.00 0.00 44.82 6.86
106 107 1.011794 GAAGCTCAATACAGCGCGC 60.012 57.895 26.66 26.66 44.82 6.86
107 108 2.671345 GAAGCTCAATACAGCGCGCG 62.671 60.000 28.44 28.44 44.82 6.86
108 109 3.554692 GCTCAATACAGCGCGCGT 61.555 61.111 32.35 26.73 0.00 6.01
109 110 2.317689 CTCAATACAGCGCGCGTG 59.682 61.111 32.35 27.45 0.00 5.34
110 111 2.431771 TCAATACAGCGCGCGTGT 60.432 55.556 32.35 31.03 0.00 4.49
111 112 1.955529 CTCAATACAGCGCGCGTGTT 61.956 55.000 31.68 27.20 0.00 3.32
112 113 1.154488 CAATACAGCGCGCGTGTTT 60.154 52.632 31.68 24.45 0.00 2.83
113 114 1.154488 AATACAGCGCGCGTGTTTG 60.154 52.632 31.68 23.85 0.00 2.93
114 115 1.837538 AATACAGCGCGCGTGTTTGT 61.838 50.000 31.68 27.40 0.00 2.83
115 116 1.837538 ATACAGCGCGCGTGTTTGTT 61.838 50.000 31.68 16.29 0.00 2.83
116 117 2.037913 TACAGCGCGCGTGTTTGTTT 62.038 50.000 31.68 15.78 0.00 2.83
117 118 2.351888 AGCGCGCGTGTTTGTTTC 60.352 55.556 32.35 11.09 0.00 2.78
118 119 2.649349 GCGCGCGTGTTTGTTTCA 60.649 55.556 32.35 0.00 0.00 2.69
119 120 2.218239 GCGCGCGTGTTTGTTTCAA 61.218 52.632 32.35 0.00 0.00 2.69
120 121 1.734359 GCGCGCGTGTTTGTTTCAAA 61.734 50.000 32.35 0.00 0.00 2.69
121 122 0.843242 CGCGCGTGTTTGTTTCAAAT 59.157 45.000 24.19 0.00 0.00 2.32
122 123 1.394101 CGCGCGTGTTTGTTTCAAATG 60.394 47.619 24.19 0.00 0.00 2.32
123 124 1.849219 GCGCGTGTTTGTTTCAAATGA 59.151 42.857 8.43 0.00 0.00 2.57
124 125 2.280183 GCGCGTGTTTGTTTCAAATGAA 59.720 40.909 8.43 0.00 0.00 2.57
125 126 3.241804 GCGCGTGTTTGTTTCAAATGAAA 60.242 39.130 8.43 4.52 41.29 2.69
139 140 8.647143 TTTCAAATGAAACCAAATCAGAGAAC 57.353 30.769 4.52 0.00 38.94 3.01
152 153 0.949397 AGAGAACGACACGTGCACTA 59.051 50.000 17.22 0.00 39.99 2.74
187 188 0.921347 CAGTATGCAAGTACGTCCGC 59.079 55.000 0.00 0.00 0.00 5.54
224 226 6.658391 AGCCAATTAAGATTGAGCATATCCTC 59.342 38.462 12.02 0.00 44.37 3.71
225 227 6.127786 GCCAATTAAGATTGAGCATATCCTCC 60.128 42.308 0.92 0.00 44.37 4.30
226 228 7.173722 CCAATTAAGATTGAGCATATCCTCCT 58.826 38.462 0.92 0.00 44.37 3.69
238 240 0.173708 ATCCTCCTGCTCGACGAAAC 59.826 55.000 0.00 0.00 0.00 2.78
247 249 1.853230 CTCGACGAAACAATTCACGC 58.147 50.000 0.00 0.00 36.02 5.34
248 250 1.455786 CTCGACGAAACAATTCACGCT 59.544 47.619 0.00 0.00 36.02 5.07
249 251 2.659757 CTCGACGAAACAATTCACGCTA 59.340 45.455 0.00 0.00 36.02 4.26
250 252 2.406024 TCGACGAAACAATTCACGCTAC 59.594 45.455 0.00 0.00 36.02 3.58
366 380 1.450312 GAGCCCAATCACCACTCGG 60.450 63.158 0.00 0.00 38.77 4.63
376 390 2.511818 ACCACTCGGTGTTCACAGA 58.488 52.632 5.32 5.56 46.79 3.41
377 391 1.048601 ACCACTCGGTGTTCACAGAT 58.951 50.000 6.28 0.00 46.79 2.90
378 392 2.244695 ACCACTCGGTGTTCACAGATA 58.755 47.619 6.28 0.00 46.79 1.98
379 393 2.029290 ACCACTCGGTGTTCACAGATAC 60.029 50.000 6.28 0.00 46.79 2.24
380 394 2.029380 CCACTCGGTGTTCACAGATACA 60.029 50.000 6.28 0.00 0.00 2.29
381 395 2.987149 CACTCGGTGTTCACAGATACAC 59.013 50.000 6.28 0.00 42.97 2.90
382 396 2.626266 ACTCGGTGTTCACAGATACACA 59.374 45.455 6.28 0.00 44.94 3.72
383 397 3.245797 CTCGGTGTTCACAGATACACAG 58.754 50.000 6.28 0.00 44.94 3.66
384 398 1.726791 CGGTGTTCACAGATACACAGC 59.273 52.381 0.00 0.00 44.94 4.40
385 399 2.610479 CGGTGTTCACAGATACACAGCT 60.610 50.000 0.00 0.00 44.94 4.24
386 400 2.996621 GGTGTTCACAGATACACAGCTC 59.003 50.000 0.00 0.00 44.94 4.09
387 401 2.663602 GTGTTCACAGATACACAGCTCG 59.336 50.000 0.00 0.00 43.15 5.03
433 468 3.384532 CCCTTTGCTTGCGCCCAT 61.385 61.111 4.18 0.00 34.43 4.00
434 469 2.125832 CCTTTGCTTGCGCCCATG 60.126 61.111 4.18 0.00 34.43 3.66
435 470 2.125832 CTTTGCTTGCGCCCATGG 60.126 61.111 4.18 4.14 34.43 3.66
436 471 2.599875 TTTGCTTGCGCCCATGGA 60.600 55.556 15.22 0.00 34.43 3.41
532 579 3.855524 GCCGGGTCATTGTTGTTTACTTG 60.856 47.826 2.18 0.00 0.00 3.16
550 598 4.122776 ACTTGATCAGGCAATTAGCTACG 58.877 43.478 4.46 0.00 44.79 3.51
551 599 3.819564 TGATCAGGCAATTAGCTACGT 57.180 42.857 0.00 0.00 44.79 3.57
552 600 4.929819 TGATCAGGCAATTAGCTACGTA 57.070 40.909 0.00 0.00 44.79 3.57
553 601 4.617959 TGATCAGGCAATTAGCTACGTAC 58.382 43.478 0.00 0.00 44.79 3.67
554 602 3.447918 TCAGGCAATTAGCTACGTACC 57.552 47.619 0.00 0.00 44.79 3.34
555 603 3.028850 TCAGGCAATTAGCTACGTACCT 58.971 45.455 0.00 0.00 44.79 3.08
556 604 3.449737 TCAGGCAATTAGCTACGTACCTT 59.550 43.478 0.00 0.00 44.79 3.50
557 605 4.081309 TCAGGCAATTAGCTACGTACCTTT 60.081 41.667 0.00 0.00 44.79 3.11
558 606 4.634443 CAGGCAATTAGCTACGTACCTTTT 59.366 41.667 0.00 0.00 44.79 2.27
559 607 5.813672 CAGGCAATTAGCTACGTACCTTTTA 59.186 40.000 0.00 0.00 44.79 1.52
560 608 6.482308 CAGGCAATTAGCTACGTACCTTTTAT 59.518 38.462 0.00 0.00 44.79 1.40
561 609 6.704937 AGGCAATTAGCTACGTACCTTTTATC 59.295 38.462 0.00 0.00 44.79 1.75
562 610 6.704937 GGCAATTAGCTACGTACCTTTTATCT 59.295 38.462 0.00 0.00 44.79 1.98
563 611 7.869429 GGCAATTAGCTACGTACCTTTTATCTA 59.131 37.037 0.00 0.00 44.79 1.98
564 612 8.697960 GCAATTAGCTACGTACCTTTTATCTAC 58.302 37.037 0.00 0.00 41.15 2.59
565 613 8.899776 CAATTAGCTACGTACCTTTTATCTACG 58.100 37.037 0.00 0.00 39.32 3.51
566 614 7.553881 TTAGCTACGTACCTTTTATCTACGT 57.446 36.000 7.21 7.21 46.14 3.57
567 615 8.657074 TTAGCTACGTACCTTTTATCTACGTA 57.343 34.615 8.53 8.53 43.45 3.57
568 616 6.949449 AGCTACGTACCTTTTATCTACGTAC 58.051 40.000 5.44 4.18 43.45 3.67
571 619 4.587306 CGTACCTTTTATCTACGTACGCA 58.413 43.478 16.72 0.23 43.72 5.24
572 620 4.667948 CGTACCTTTTATCTACGTACGCAG 59.332 45.833 16.72 12.80 43.72 5.18
573 621 4.037858 ACCTTTTATCTACGTACGCAGG 57.962 45.455 16.72 9.96 0.00 4.85
574 622 2.793232 CCTTTTATCTACGTACGCAGGC 59.207 50.000 16.72 0.00 0.00 4.85
575 623 3.441163 CTTTTATCTACGTACGCAGGCA 58.559 45.455 16.72 0.31 0.00 4.75
576 624 2.480224 TTATCTACGTACGCAGGCAC 57.520 50.000 16.72 0.00 0.00 5.01
577 625 0.305617 TATCTACGTACGCAGGCACG 59.694 55.000 16.72 3.05 43.84 5.34
578 626 2.931713 ATCTACGTACGCAGGCACGC 62.932 60.000 16.72 0.00 42.41 5.34
579 627 3.957027 CTACGTACGCAGGCACGCA 62.957 63.158 16.72 0.00 42.41 5.24
630 678 1.050204 AGTGTTACTGTTACCGGCCA 58.950 50.000 0.00 0.00 0.00 5.36
789 838 2.001872 GTGTAATGTAAACGTCCCGGG 58.998 52.381 16.85 16.85 0.00 5.73
909 967 3.126514 TCCGATCGAGTAGTGTGTTTCTC 59.873 47.826 18.66 0.00 0.00 2.87
920 978 1.142870 TGTGTTTCTCCAGGGAAGTGG 59.857 52.381 0.00 0.00 39.19 4.00
928 986 0.322546 CCAGGGAAGTGGGTTACTGC 60.323 60.000 0.00 0.00 40.26 4.40
929 987 0.400213 CAGGGAAGTGGGTTACTGCA 59.600 55.000 0.00 0.00 40.26 4.41
930 988 0.400594 AGGGAAGTGGGTTACTGCAC 59.599 55.000 0.00 0.00 38.82 4.57
931 989 0.109723 GGGAAGTGGGTTACTGCACA 59.890 55.000 0.00 0.00 38.36 4.57
932 990 1.235724 GGAAGTGGGTTACTGCACAC 58.764 55.000 0.00 0.00 42.75 3.82
933 991 1.476110 GGAAGTGGGTTACTGCACACA 60.476 52.381 5.77 0.00 44.71 3.72
936 994 3.088259 TGGGTTACTGCACACACAC 57.912 52.632 0.00 0.00 0.00 3.82
937 995 0.253327 TGGGTTACTGCACACACACA 59.747 50.000 0.00 0.00 0.00 3.72
938 996 0.661020 GGGTTACTGCACACACACAC 59.339 55.000 0.00 0.00 0.00 3.82
939 997 1.374560 GGTTACTGCACACACACACA 58.625 50.000 0.00 0.00 0.00 3.72
940 998 1.063469 GGTTACTGCACACACACACAC 59.937 52.381 0.00 0.00 0.00 3.82
941 999 1.735018 GTTACTGCACACACACACACA 59.265 47.619 0.00 0.00 0.00 3.72
942 1000 1.364721 TACTGCACACACACACACAC 58.635 50.000 0.00 0.00 0.00 3.82
943 1001 0.605050 ACTGCACACACACACACACA 60.605 50.000 0.00 0.00 0.00 3.72
944 1002 0.179192 CTGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
957 1015 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
963 1021 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
964 1022 3.189080 CACACACACAGAGAGAGAGAGAG 59.811 52.174 0.00 0.00 0.00 3.20
965 1023 3.072330 ACACACACAGAGAGAGAGAGAGA 59.928 47.826 0.00 0.00 0.00 3.10
966 1024 3.686241 CACACACAGAGAGAGAGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
967 1025 3.582647 ACACACAGAGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
968 1026 4.186926 CACACAGAGAGAGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
969 1027 4.081476 CACACAGAGAGAGAGAGAGAGAGA 60.081 50.000 0.00 0.00 0.00 3.10
970 1028 4.161189 ACACAGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
971 1029 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
972 1030 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
973 1031 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
974 1032 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
975 1033 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
976 1034 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
977 1035 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
978 1036 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
979 1037 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
980 1038 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
981 1039 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
982 1040 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
983 1041 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
984 1042 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
985 1043 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
986 1044 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
987 1045 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1097 1496 4.142622 TGTTCCTCAATTGATTCATGTCGC 60.143 41.667 8.96 0.00 0.00 5.19
1105 1504 3.443099 TGATTCATGTCGCAGAGTAGG 57.557 47.619 0.00 0.00 36.95 3.18
1113 1512 4.933483 GCAGAGTAGGCGATCGAG 57.067 61.111 21.57 0.00 0.00 4.04
1114 1513 2.026522 GCAGAGTAGGCGATCGAGT 58.973 57.895 21.57 7.12 0.00 4.18
1115 1514 1.227639 GCAGAGTAGGCGATCGAGTA 58.772 55.000 21.57 6.00 0.00 2.59
1136 1541 2.014093 GAGCAGTGCGTACGTGATGC 62.014 60.000 23.84 23.84 40.84 3.91
1140 1545 1.225745 GTGCGTACGTGATGCTTGC 60.226 57.895 17.90 0.00 41.07 4.01
1142 1547 0.948623 TGCGTACGTGATGCTTGCTT 60.949 50.000 17.90 0.00 41.07 3.91
1144 1549 1.266891 GCGTACGTGATGCTTGCTTAC 60.267 52.381 17.90 0.00 37.09 2.34
1145 1550 1.007422 CGTACGTGATGCTTGCTTACG 60.007 52.381 7.22 12.35 40.30 3.18
1163 1568 5.050769 GCTTACGTGATCATACATGTTGGAG 60.051 44.000 2.30 0.00 40.03 3.86
1173 1578 1.675641 ATGTTGGAGCGGCAGGTTC 60.676 57.895 1.45 0.00 0.00 3.62
1338 1749 2.490903 GACGGCCACGAGGTATATACAT 59.509 50.000 14.70 7.53 44.60 2.29
1339 1750 2.230508 ACGGCCACGAGGTATATACATG 59.769 50.000 14.70 6.04 44.60 3.21
1341 1752 2.028476 GGCCACGAGGTATATACATGCA 60.028 50.000 14.70 0.00 37.19 3.96
1343 1754 3.585862 CCACGAGGTATATACATGCACC 58.414 50.000 14.70 0.00 0.00 5.01
1344 1755 3.585862 CACGAGGTATATACATGCACCC 58.414 50.000 14.70 0.00 0.00 4.61
1345 1756 3.006430 CACGAGGTATATACATGCACCCA 59.994 47.826 14.70 0.00 0.00 4.51
1346 1757 3.838317 ACGAGGTATATACATGCACCCAT 59.162 43.478 14.70 0.00 0.00 4.00
1372 1794 2.024588 GCTTGTGTGTGCGTGTGG 59.975 61.111 0.00 0.00 0.00 4.17
1406 1849 1.740296 GAATACGTGTGGCGGCACT 60.740 57.895 37.33 23.06 46.52 4.40
1574 2033 2.224621 GGTGACGATCCATCCAATCCAT 60.225 50.000 0.00 0.00 0.00 3.41
1585 2044 4.567116 CCATCCAATCCATCGGATCAATCT 60.567 45.833 0.00 0.00 42.27 2.40
1589 2048 4.214971 CCAATCCATCGGATCAATCTTGTC 59.785 45.833 0.00 0.00 42.27 3.18
1644 2114 2.671177 CGCTCTGACCGTTTGCTGG 61.671 63.158 0.00 0.00 0.00 4.85
1742 2218 2.503920 CGTAGCGGCCATTAACTAGT 57.496 50.000 2.24 0.00 0.00 2.57
1744 2220 3.303406 CGTAGCGGCCATTAACTAGTAC 58.697 50.000 2.24 0.00 0.00 2.73
1745 2221 2.503920 AGCGGCCATTAACTAGTACG 57.496 50.000 2.24 0.00 0.00 3.67
1746 2222 1.068127 AGCGGCCATTAACTAGTACGG 59.932 52.381 2.24 0.00 0.00 4.02
1776 2262 1.132640 GTTCAGGACGCGAACATGC 59.867 57.895 15.93 0.00 41.92 4.06
1780 2266 1.005037 AGGACGCGAACATGCTTGA 60.005 52.632 15.93 0.00 0.00 3.02
1785 2271 0.729116 CGCGAACATGCTTGATTCCT 59.271 50.000 0.00 0.00 0.00 3.36
1794 2280 2.362736 TGCTTGATTCCTGCAGATGAC 58.637 47.619 17.39 4.67 32.55 3.06
1819 2305 2.027625 CAGGTGCCCTTTCGACGAC 61.028 63.158 0.00 0.00 0.00 4.34
1823 2309 0.599204 GTGCCCTTTCGACGACAGAA 60.599 55.000 12.50 0.00 0.00 3.02
1826 2312 1.939838 GCCCTTTCGACGACAGAACAT 60.940 52.381 12.50 0.00 0.00 2.71
1858 2346 1.877672 TACCTCCCCTGCTTCCCGTA 61.878 60.000 0.00 0.00 0.00 4.02
1859 2347 2.732619 CCTCCCCTGCTTCCCGTAC 61.733 68.421 0.00 0.00 0.00 3.67
1860 2348 3.072468 TCCCCTGCTTCCCGTACG 61.072 66.667 8.69 8.69 0.00 3.67
1862 2350 2.053865 CCCCTGCTTCCCGTACGTA 61.054 63.158 15.21 0.00 0.00 3.57
1866 2354 1.269102 CCTGCTTCCCGTACGTAGATG 60.269 57.143 15.21 13.06 0.00 2.90
1867 2355 0.742505 TGCTTCCCGTACGTAGATGG 59.257 55.000 15.21 7.85 0.00 3.51
2412 2908 7.876068 GGATTAGTGAATAATATCGGTTGGACA 59.124 37.037 0.00 0.00 34.10 4.02
2413 2909 9.436957 GATTAGTGAATAATATCGGTTGGACAT 57.563 33.333 0.00 0.00 34.10 3.06
2414 2910 9.793259 ATTAGTGAATAATATCGGTTGGACATT 57.207 29.630 0.00 0.00 32.08 2.71
2415 2911 9.621629 TTAGTGAATAATATCGGTTGGACATTT 57.378 29.630 0.00 0.00 0.00 2.32
2416 2912 8.519799 AGTGAATAATATCGGTTGGACATTTT 57.480 30.769 0.00 0.00 0.00 1.82
2417 2913 8.621286 AGTGAATAATATCGGTTGGACATTTTC 58.379 33.333 0.00 0.00 0.00 2.29
2418 2914 8.621286 GTGAATAATATCGGTTGGACATTTTCT 58.379 33.333 0.00 0.00 0.00 2.52
2419 2915 9.184523 TGAATAATATCGGTTGGACATTTTCTT 57.815 29.630 0.00 0.00 0.00 2.52
2422 2918 9.801873 ATAATATCGGTTGGACATTTTCTTTTG 57.198 29.630 0.00 0.00 0.00 2.44
2423 2919 5.782893 ATCGGTTGGACATTTTCTTTTGA 57.217 34.783 0.00 0.00 0.00 2.69
2424 2920 5.181690 TCGGTTGGACATTTTCTTTTGAG 57.818 39.130 0.00 0.00 0.00 3.02
2425 2921 4.884744 TCGGTTGGACATTTTCTTTTGAGA 59.115 37.500 0.00 0.00 0.00 3.27
2426 2922 5.358442 TCGGTTGGACATTTTCTTTTGAGAA 59.642 36.000 0.00 0.00 0.00 2.87
2427 2923 6.039616 CGGTTGGACATTTTCTTTTGAGAAA 58.960 36.000 0.00 0.00 36.17 2.52
2428 2924 6.019881 CGGTTGGACATTTTCTTTTGAGAAAC 60.020 38.462 1.35 0.00 37.50 2.78
2429 2925 6.816140 GGTTGGACATTTTCTTTTGAGAAACA 59.184 34.615 1.35 0.00 37.50 2.83
2430 2926 7.495606 GGTTGGACATTTTCTTTTGAGAAACAT 59.504 33.333 1.35 0.00 37.50 2.71
2431 2927 8.330302 GTTGGACATTTTCTTTTGAGAAACATG 58.670 33.333 14.90 14.90 37.50 3.21
2432 2928 7.555087 TGGACATTTTCTTTTGAGAAACATGT 58.445 30.769 18.46 18.46 39.36 3.21
2433 2929 7.706179 TGGACATTTTCTTTTGAGAAACATGTC 59.294 33.333 25.26 25.26 43.60 3.06
2434 2930 7.096477 GGACATTTTCTTTTGAGAAACATGTCG 60.096 37.037 25.61 10.47 44.17 4.35
2435 2931 7.257722 ACATTTTCTTTTGAGAAACATGTCGT 58.742 30.769 0.00 0.00 36.28 4.34
2436 2932 7.759433 ACATTTTCTTTTGAGAAACATGTCGTT 59.241 29.630 0.00 0.00 36.28 3.85
2451 2947 6.911484 CATGTCGTTTGGACTTGTAAAATC 57.089 37.500 2.60 0.00 46.24 2.17
2452 2948 5.085636 TGTCGTTTGGACTTGTAAAATCG 57.914 39.130 0.00 0.00 46.24 3.34
2453 2949 4.809958 TGTCGTTTGGACTTGTAAAATCGA 59.190 37.500 0.00 0.00 46.24 3.59
2454 2950 5.293814 TGTCGTTTGGACTTGTAAAATCGAA 59.706 36.000 0.00 0.00 46.24 3.71
2455 2951 6.017770 TGTCGTTTGGACTTGTAAAATCGAAT 60.018 34.615 0.00 0.00 46.24 3.34
2456 2952 6.518736 GTCGTTTGGACTTGTAAAATCGAATC 59.481 38.462 0.00 0.00 42.62 2.52
2457 2953 5.793457 CGTTTGGACTTGTAAAATCGAATCC 59.207 40.000 0.00 0.00 0.00 3.01
2458 2954 6.348213 CGTTTGGACTTGTAAAATCGAATCCT 60.348 38.462 0.00 0.00 0.00 3.24
2459 2955 7.368059 GTTTGGACTTGTAAAATCGAATCCTT 58.632 34.615 0.00 0.00 0.00 3.36
2460 2956 6.494893 TGGACTTGTAAAATCGAATCCTTG 57.505 37.500 0.00 0.00 0.00 3.61
2461 2957 6.001460 TGGACTTGTAAAATCGAATCCTTGT 58.999 36.000 0.00 0.00 0.00 3.16
2462 2958 7.162761 TGGACTTGTAAAATCGAATCCTTGTA 58.837 34.615 0.00 0.00 0.00 2.41
2463 2959 7.827236 TGGACTTGTAAAATCGAATCCTTGTAT 59.173 33.333 0.00 0.00 0.00 2.29
2464 2960 9.321562 GGACTTGTAAAATCGAATCCTTGTATA 57.678 33.333 0.00 0.00 0.00 1.47
2469 2965 8.988934 TGTAAAATCGAATCCTTGTATATGAGC 58.011 33.333 0.00 0.00 0.00 4.26
2470 2966 8.988934 GTAAAATCGAATCCTTGTATATGAGCA 58.011 33.333 0.00 0.00 0.00 4.26
2471 2967 7.664082 AAATCGAATCCTTGTATATGAGCAG 57.336 36.000 0.00 0.00 0.00 4.24
2472 2968 4.560128 TCGAATCCTTGTATATGAGCAGC 58.440 43.478 0.00 0.00 0.00 5.25
2473 2969 4.281941 TCGAATCCTTGTATATGAGCAGCT 59.718 41.667 0.00 0.00 0.00 4.24
2474 2970 5.476945 TCGAATCCTTGTATATGAGCAGCTA 59.523 40.000 0.00 0.00 0.00 3.32
2475 2971 5.574830 CGAATCCTTGTATATGAGCAGCTAC 59.425 44.000 0.00 0.00 0.00 3.58
2476 2972 6.571344 CGAATCCTTGTATATGAGCAGCTACT 60.571 42.308 0.00 0.00 0.00 2.57
2477 2973 5.459536 TCCTTGTATATGAGCAGCTACTG 57.540 43.478 0.00 0.00 34.12 2.74
2478 2974 4.281941 TCCTTGTATATGAGCAGCTACTGG 59.718 45.833 0.00 0.00 31.21 4.00
2479 2975 3.667497 TGTATATGAGCAGCTACTGGC 57.333 47.619 0.00 0.00 42.19 4.85
2480 2976 2.965147 TGTATATGAGCAGCTACTGGCA 59.035 45.455 0.00 0.00 44.79 4.92
2481 2977 3.580022 TGTATATGAGCAGCTACTGGCAT 59.420 43.478 0.00 0.00 44.79 4.40
2482 2978 3.784511 ATATGAGCAGCTACTGGCATT 57.215 42.857 0.00 0.00 44.79 3.56
2483 2979 4.897509 ATATGAGCAGCTACTGGCATTA 57.102 40.909 0.00 0.00 44.79 1.90
2484 2980 3.784511 ATGAGCAGCTACTGGCATTAT 57.215 42.857 0.00 0.00 44.79 1.28
2485 2981 3.565764 TGAGCAGCTACTGGCATTATT 57.434 42.857 0.00 0.00 44.79 1.40
2486 2982 3.208594 TGAGCAGCTACTGGCATTATTG 58.791 45.455 0.00 0.00 44.79 1.90
2487 2983 2.551459 GAGCAGCTACTGGCATTATTGG 59.449 50.000 0.00 0.00 44.79 3.16
2488 2984 2.092212 AGCAGCTACTGGCATTATTGGT 60.092 45.455 0.00 0.00 44.79 3.67
2489 2985 2.689983 GCAGCTACTGGCATTATTGGTT 59.310 45.455 0.00 0.00 44.79 3.67
2490 2986 3.489738 GCAGCTACTGGCATTATTGGTTG 60.490 47.826 0.00 0.00 44.79 3.77
2491 2987 3.067180 CAGCTACTGGCATTATTGGTTGG 59.933 47.826 0.00 0.00 44.79 3.77
2492 2988 2.223805 GCTACTGGCATTATTGGTTGGC 60.224 50.000 0.00 0.00 41.35 4.52
2493 2989 1.194218 ACTGGCATTATTGGTTGGCC 58.806 50.000 0.00 0.00 44.82 5.36
2494 2990 1.273211 ACTGGCATTATTGGTTGGCCT 60.273 47.619 3.32 0.00 44.85 5.19
2495 2991 2.024464 ACTGGCATTATTGGTTGGCCTA 60.024 45.455 3.32 0.00 44.85 3.93
2496 2992 3.233507 CTGGCATTATTGGTTGGCCTAT 58.766 45.455 3.32 0.00 44.85 2.57
2497 2993 3.642848 CTGGCATTATTGGTTGGCCTATT 59.357 43.478 3.32 0.00 44.85 1.73
2498 2994 3.640967 TGGCATTATTGGTTGGCCTATTC 59.359 43.478 3.32 0.00 44.85 1.75
2499 2995 3.006859 GGCATTATTGGTTGGCCTATTCC 59.993 47.826 3.32 1.50 41.39 3.01
2500 2996 3.305335 GCATTATTGGTTGGCCTATTCCG 60.305 47.826 3.32 0.00 32.61 4.30
2501 2997 3.655615 TTATTGGTTGGCCTATTCCGT 57.344 42.857 3.32 0.00 32.61 4.69
2502 2998 2.525105 ATTGGTTGGCCTATTCCGTT 57.475 45.000 3.32 0.00 35.27 4.44
2503 2999 3.655615 ATTGGTTGGCCTATTCCGTTA 57.344 42.857 3.32 0.00 35.27 3.18
2504 3000 3.436577 TTGGTTGGCCTATTCCGTTAA 57.563 42.857 3.32 0.00 35.27 2.01
2505 3001 2.713877 TGGTTGGCCTATTCCGTTAAC 58.286 47.619 3.32 0.00 35.27 2.01
2506 3002 1.667212 GGTTGGCCTATTCCGTTAACG 59.333 52.381 20.99 20.99 39.44 3.18
2516 3012 3.884900 CGTTAACGGGCCTTCTGG 58.115 61.111 20.24 0.00 35.37 3.86
2534 3030 3.596362 GCTTAGGGCCTGTTTGGAT 57.404 52.632 18.53 0.00 38.35 3.41
2535 3031 1.852633 GCTTAGGGCCTGTTTGGATT 58.147 50.000 18.53 0.00 38.35 3.01
2536 3032 1.751351 GCTTAGGGCCTGTTTGGATTC 59.249 52.381 18.53 0.00 38.35 2.52
2537 3033 2.883888 GCTTAGGGCCTGTTTGGATTCA 60.884 50.000 18.53 0.00 38.35 2.57
2538 3034 3.635591 CTTAGGGCCTGTTTGGATTCAT 58.364 45.455 18.53 0.00 38.35 2.57
2539 3035 1.856629 AGGGCCTGTTTGGATTCATG 58.143 50.000 4.50 0.00 38.35 3.07
2540 3036 0.176449 GGGCCTGTTTGGATTCATGC 59.824 55.000 0.84 0.00 38.35 4.06
2541 3037 0.176449 GGCCTGTTTGGATTCATGCC 59.824 55.000 0.00 0.00 37.94 4.40
2542 3038 0.896923 GCCTGTTTGGATTCATGCCA 59.103 50.000 0.00 0.00 38.35 4.92
2543 3039 1.275856 GCCTGTTTGGATTCATGCCAA 59.724 47.619 0.00 0.00 43.31 4.52
2544 3040 2.093341 GCCTGTTTGGATTCATGCCAAT 60.093 45.455 4.37 0.00 44.30 3.16
2545 3041 3.527533 CCTGTTTGGATTCATGCCAATG 58.472 45.455 4.37 0.10 44.30 2.82
2546 3042 2.933906 CTGTTTGGATTCATGCCAATGC 59.066 45.455 4.37 0.00 44.30 3.56
2547 3043 6.662986 CCTGTTTGGATTCATGCCAATGCA 62.663 45.833 4.37 1.28 44.30 3.96
2558 3054 3.361158 CAATGCACGCCCGACCAA 61.361 61.111 0.00 0.00 0.00 3.67
2559 3055 2.596046 AATGCACGCCCGACCAAA 60.596 55.556 0.00 0.00 0.00 3.28
2560 3056 2.196925 AATGCACGCCCGACCAAAA 61.197 52.632 0.00 0.00 0.00 2.44
2561 3057 1.739338 AATGCACGCCCGACCAAAAA 61.739 50.000 0.00 0.00 0.00 1.94
2562 3058 2.050442 GCACGCCCGACCAAAAAG 60.050 61.111 0.00 0.00 0.00 2.27
2563 3059 2.841160 GCACGCCCGACCAAAAAGT 61.841 57.895 0.00 0.00 0.00 2.66
2564 3060 1.731093 CACGCCCGACCAAAAAGTT 59.269 52.632 0.00 0.00 0.00 2.66
2565 3061 0.593773 CACGCCCGACCAAAAAGTTG 60.594 55.000 0.00 0.00 34.25 3.16
2576 3072 2.738135 CAAAAAGTTGGCTAACCCACG 58.262 47.619 9.60 0.00 45.34 4.94
2577 3073 2.061509 AAAAGTTGGCTAACCCACGT 57.938 45.000 9.60 0.00 45.34 4.49
2578 3074 2.934886 AAAGTTGGCTAACCCACGTA 57.065 45.000 9.60 0.00 45.34 3.57
2579 3075 3.428413 AAAGTTGGCTAACCCACGTAT 57.572 42.857 9.60 0.00 45.34 3.06
2580 3076 3.428413 AAGTTGGCTAACCCACGTATT 57.572 42.857 9.60 0.00 45.34 1.89
2581 3077 3.428413 AGTTGGCTAACCCACGTATTT 57.572 42.857 9.60 0.00 45.34 1.40
2582 3078 3.758425 AGTTGGCTAACCCACGTATTTT 58.242 40.909 9.60 0.00 45.34 1.82
2583 3079 3.504520 AGTTGGCTAACCCACGTATTTTG 59.495 43.478 9.60 0.00 45.34 2.44
2584 3080 2.438411 TGGCTAACCCACGTATTTTGG 58.562 47.619 0.00 0.00 39.18 3.28
2585 3081 1.133598 GGCTAACCCACGTATTTTGGC 59.866 52.381 0.00 0.00 32.13 4.52
2586 3082 2.089201 GCTAACCCACGTATTTTGGCT 58.911 47.619 0.00 0.00 32.13 4.75
2587 3083 2.159435 GCTAACCCACGTATTTTGGCTG 60.159 50.000 0.00 0.00 32.13 4.85
2588 3084 0.601057 AACCCACGTATTTTGGCTGC 59.399 50.000 0.00 0.00 32.13 5.25
2589 3085 0.251165 ACCCACGTATTTTGGCTGCT 60.251 50.000 0.00 0.00 32.13 4.24
2590 3086 0.171007 CCCACGTATTTTGGCTGCTG 59.829 55.000 0.00 0.00 32.13 4.41
2591 3087 0.881118 CCACGTATTTTGGCTGCTGT 59.119 50.000 0.00 0.00 0.00 4.40
2592 3088 1.269448 CCACGTATTTTGGCTGCTGTT 59.731 47.619 0.00 0.00 0.00 3.16
2593 3089 2.288152 CCACGTATTTTGGCTGCTGTTT 60.288 45.455 0.00 0.00 0.00 2.83
2594 3090 2.725723 CACGTATTTTGGCTGCTGTTTG 59.274 45.455 0.00 0.00 0.00 2.93
2595 3091 2.288152 ACGTATTTTGGCTGCTGTTTGG 60.288 45.455 0.00 0.00 0.00 3.28
2596 3092 2.030363 CGTATTTTGGCTGCTGTTTGGA 60.030 45.455 0.00 0.00 0.00 3.53
2597 3093 3.367292 CGTATTTTGGCTGCTGTTTGGAT 60.367 43.478 0.00 0.00 0.00 3.41
2598 3094 2.818130 TTTTGGCTGCTGTTTGGATC 57.182 45.000 0.00 0.00 0.00 3.36
2599 3095 0.597568 TTTGGCTGCTGTTTGGATCG 59.402 50.000 0.00 0.00 0.00 3.69
2600 3096 0.250684 TTGGCTGCTGTTTGGATCGA 60.251 50.000 0.00 0.00 0.00 3.59
2601 3097 0.955428 TGGCTGCTGTTTGGATCGAC 60.955 55.000 0.00 0.00 0.00 4.20
2602 3098 1.421485 GCTGCTGTTTGGATCGACG 59.579 57.895 0.00 0.00 0.00 5.12
2603 3099 1.421485 CTGCTGTTTGGATCGACGC 59.579 57.895 0.00 0.00 0.00 5.19
2604 3100 1.970917 CTGCTGTTTGGATCGACGCC 61.971 60.000 0.00 0.00 0.00 5.68
2605 3101 2.032634 GCTGTTTGGATCGACGCCA 61.033 57.895 4.80 4.80 0.00 5.69
2606 3102 1.573829 GCTGTTTGGATCGACGCCAA 61.574 55.000 15.49 15.49 43.31 4.52
2637 3133 4.785453 CCAACTGGCCCGGCTCTC 62.785 72.222 9.86 0.00 0.00 3.20
2638 3134 4.785453 CAACTGGCCCGGCTCTCC 62.785 72.222 9.86 0.00 0.00 3.71
2647 3143 2.829003 CGGCTCTCCTCCGTGCTA 60.829 66.667 0.00 0.00 41.85 3.49
2648 3144 2.196925 CGGCTCTCCTCCGTGCTAT 61.197 63.158 0.00 0.00 41.85 2.97
2649 3145 1.739338 CGGCTCTCCTCCGTGCTATT 61.739 60.000 0.00 0.00 41.85 1.73
2650 3146 0.466124 GGCTCTCCTCCGTGCTATTT 59.534 55.000 0.00 0.00 0.00 1.40
2651 3147 1.576356 GCTCTCCTCCGTGCTATTTG 58.424 55.000 0.00 0.00 0.00 2.32
2652 3148 1.576356 CTCTCCTCCGTGCTATTTGC 58.424 55.000 0.00 0.00 43.25 3.68
2653 3149 0.179111 TCTCCTCCGTGCTATTTGCG 60.179 55.000 0.00 0.00 46.63 4.85
2659 3155 4.056097 GTGCTATTTGCGCCAACG 57.944 55.556 4.18 0.00 45.73 4.10
2690 3186 3.880846 CAGGCGCCGGAATGCTTC 61.881 66.667 23.19 0.00 0.00 3.86
2695 3191 3.439540 GCCGGAATGCTTCGCCAA 61.440 61.111 5.05 0.00 0.00 4.52
2696 3192 2.988688 GCCGGAATGCTTCGCCAAA 61.989 57.895 5.05 0.00 0.00 3.28
2697 3193 1.583986 CCGGAATGCTTCGCCAAAA 59.416 52.632 0.00 0.00 0.00 2.44
2698 3194 0.038709 CCGGAATGCTTCGCCAAAAA 60.039 50.000 0.00 0.00 0.00 1.94
2715 3211 3.535280 AAAAATTGGCGTGGTGACTTT 57.465 38.095 0.00 0.00 0.00 2.66
2716 3212 2.507339 AAATTGGCGTGGTGACTTTG 57.493 45.000 0.00 0.00 0.00 2.77
2717 3213 0.673437 AATTGGCGTGGTGACTTTGG 59.327 50.000 0.00 0.00 0.00 3.28
2718 3214 0.467290 ATTGGCGTGGTGACTTTGGT 60.467 50.000 0.00 0.00 0.00 3.67
2719 3215 0.681564 TTGGCGTGGTGACTTTGGTT 60.682 50.000 0.00 0.00 0.00 3.67
2720 3216 1.358759 GGCGTGGTGACTTTGGTTG 59.641 57.895 0.00 0.00 0.00 3.77
2721 3217 1.381165 GGCGTGGTGACTTTGGTTGT 61.381 55.000 0.00 0.00 0.00 3.32
2722 3218 0.454196 GCGTGGTGACTTTGGTTGTT 59.546 50.000 0.00 0.00 0.00 2.83
2723 3219 1.797348 GCGTGGTGACTTTGGTTGTTG 60.797 52.381 0.00 0.00 0.00 3.33
2724 3220 1.740585 CGTGGTGACTTTGGTTGTTGA 59.259 47.619 0.00 0.00 0.00 3.18
2725 3221 2.357637 CGTGGTGACTTTGGTTGTTGAT 59.642 45.455 0.00 0.00 0.00 2.57
2726 3222 3.181491 CGTGGTGACTTTGGTTGTTGATT 60.181 43.478 0.00 0.00 0.00 2.57
2727 3223 4.111916 GTGGTGACTTTGGTTGTTGATTG 58.888 43.478 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.194692 GTCAAGCTTCGTAAACTTTGACAAAG 59.805 38.462 23.41 23.41 44.10 2.77
1 2 6.025280 GTCAAGCTTCGTAAACTTTGACAAA 58.975 36.000 0.00 0.00 0.00 2.83
3 4 4.873827 AGTCAAGCTTCGTAAACTTTGACA 59.126 37.500 15.04 0.00 30.59 3.58
4 5 5.405331 AGTCAAGCTTCGTAAACTTTGAC 57.595 39.130 0.00 6.98 0.00 3.18
5 6 6.431198 AAAGTCAAGCTTCGTAAACTTTGA 57.569 33.333 14.61 0.00 36.06 2.69
6 7 6.482451 CAAAGTCAAGCTTCGTAAACTTTG 57.518 37.500 21.13 21.13 43.84 2.77
8 9 6.260050 TGATCAAAGTCAAGCTTCGTAAACTT 59.740 34.615 0.00 0.00 36.17 2.66
10 11 5.985781 TGATCAAAGTCAAGCTTCGTAAAC 58.014 37.500 0.00 0.00 36.17 2.01
11 12 6.612247 TTGATCAAAGTCAAGCTTCGTAAA 57.388 33.333 5.45 0.00 36.17 2.01
12 13 6.612247 TTTGATCAAAGTCAAGCTTCGTAA 57.388 33.333 16.91 0.00 39.13 3.18
13 14 6.228273 CTTTGATCAAAGTCAAGCTTCGTA 57.772 37.500 31.54 3.66 42.02 3.43
14 15 5.100751 CTTTGATCAAAGTCAAGCTTCGT 57.899 39.130 31.54 0.00 42.02 3.85
26 27 5.874810 ACTCTGCGTATTAGCTTTGATCAAA 59.125 36.000 19.45 19.45 38.13 2.69
27 28 5.419542 ACTCTGCGTATTAGCTTTGATCAA 58.580 37.500 3.38 3.38 38.13 2.57
28 29 5.011090 ACTCTGCGTATTAGCTTTGATCA 57.989 39.130 0.00 0.00 38.13 2.92
29 30 7.464830 TTTACTCTGCGTATTAGCTTTGATC 57.535 36.000 0.00 0.00 38.13 2.92
30 31 9.542462 TTATTTACTCTGCGTATTAGCTTTGAT 57.458 29.630 0.00 0.00 38.13 2.57
31 32 8.936070 TTATTTACTCTGCGTATTAGCTTTGA 57.064 30.769 0.00 0.00 38.13 2.69
32 33 9.638300 CTTTATTTACTCTGCGTATTAGCTTTG 57.362 33.333 0.00 0.00 38.13 2.77
33 34 9.595823 TCTTTATTTACTCTGCGTATTAGCTTT 57.404 29.630 0.00 0.00 38.13 3.51
34 35 9.032420 GTCTTTATTTACTCTGCGTATTAGCTT 57.968 33.333 0.00 0.00 38.13 3.74
35 36 7.378995 CGTCTTTATTTACTCTGCGTATTAGCT 59.621 37.037 0.00 0.00 38.13 3.32
36 37 7.358187 CCGTCTTTATTTACTCTGCGTATTAGC 60.358 40.741 0.00 0.00 37.71 3.09
37 38 7.859377 TCCGTCTTTATTTACTCTGCGTATTAG 59.141 37.037 0.00 0.00 0.00 1.73
38 39 7.706159 TCCGTCTTTATTTACTCTGCGTATTA 58.294 34.615 0.00 0.00 0.00 0.98
39 40 6.567050 TCCGTCTTTATTTACTCTGCGTATT 58.433 36.000 0.00 0.00 0.00 1.89
40 41 6.140303 TCCGTCTTTATTTACTCTGCGTAT 57.860 37.500 0.00 0.00 0.00 3.06
41 42 5.449588 CCTCCGTCTTTATTTACTCTGCGTA 60.450 44.000 0.00 0.00 0.00 4.42
42 43 4.421948 CTCCGTCTTTATTTACTCTGCGT 58.578 43.478 0.00 0.00 0.00 5.24
43 44 3.797256 CCTCCGTCTTTATTTACTCTGCG 59.203 47.826 0.00 0.00 0.00 5.18
44 45 4.120589 CCCTCCGTCTTTATTTACTCTGC 58.879 47.826 0.00 0.00 0.00 4.26
45 46 5.127356 ACTCCCTCCGTCTTTATTTACTCTG 59.873 44.000 0.00 0.00 0.00 3.35
46 47 5.270794 ACTCCCTCCGTCTTTATTTACTCT 58.729 41.667 0.00 0.00 0.00 3.24
47 48 5.595257 ACTCCCTCCGTCTTTATTTACTC 57.405 43.478 0.00 0.00 0.00 2.59
48 49 7.343833 TCATTACTCCCTCCGTCTTTATTTACT 59.656 37.037 0.00 0.00 0.00 2.24
49 50 7.437565 GTCATTACTCCCTCCGTCTTTATTTAC 59.562 40.741 0.00 0.00 0.00 2.01
50 51 7.124599 TGTCATTACTCCCTCCGTCTTTATTTA 59.875 37.037 0.00 0.00 0.00 1.40
51 52 6.070424 TGTCATTACTCCCTCCGTCTTTATTT 60.070 38.462 0.00 0.00 0.00 1.40
52 53 5.424252 TGTCATTACTCCCTCCGTCTTTATT 59.576 40.000 0.00 0.00 0.00 1.40
53 54 4.960469 TGTCATTACTCCCTCCGTCTTTAT 59.040 41.667 0.00 0.00 0.00 1.40
54 55 4.346730 TGTCATTACTCCCTCCGTCTTTA 58.653 43.478 0.00 0.00 0.00 1.85
55 56 3.170717 TGTCATTACTCCCTCCGTCTTT 58.829 45.455 0.00 0.00 0.00 2.52
56 57 2.816411 TGTCATTACTCCCTCCGTCTT 58.184 47.619 0.00 0.00 0.00 3.01
57 58 2.526888 TGTCATTACTCCCTCCGTCT 57.473 50.000 0.00 0.00 0.00 4.18
58 59 3.056035 ACTTTGTCATTACTCCCTCCGTC 60.056 47.826 0.00 0.00 0.00 4.79
59 60 2.904434 ACTTTGTCATTACTCCCTCCGT 59.096 45.455 0.00 0.00 0.00 4.69
60 61 3.056107 TGACTTTGTCATTACTCCCTCCG 60.056 47.826 0.00 0.00 37.67 4.63
61 62 4.553330 TGACTTTGTCATTACTCCCTCC 57.447 45.455 0.00 0.00 37.67 4.30
68 69 8.043723 AGCTTCTGCGATGACTTTGTCATTAC 62.044 42.308 13.46 9.73 46.19 1.89
69 70 6.084354 AGCTTCTGCGATGACTTTGTCATTA 61.084 40.000 13.46 4.55 46.19 1.90
70 71 5.338589 AGCTTCTGCGATGACTTTGTCATT 61.339 41.667 13.46 0.00 46.19 2.57
71 72 3.867600 AGCTTCTGCGATGACTTTGTCAT 60.868 43.478 12.31 12.31 45.17 3.06
72 73 1.800586 GCTTCTGCGATGACTTTGTCA 59.199 47.619 2.77 2.77 46.90 3.58
73 74 2.072298 AGCTTCTGCGATGACTTTGTC 58.928 47.619 0.00 0.00 45.42 3.18
74 75 2.072298 GAGCTTCTGCGATGACTTTGT 58.928 47.619 0.00 0.00 45.42 2.83
75 76 2.071540 TGAGCTTCTGCGATGACTTTG 58.928 47.619 0.00 0.00 45.42 2.77
76 77 2.462456 TGAGCTTCTGCGATGACTTT 57.538 45.000 0.00 0.00 45.42 2.66
77 78 2.462456 TTGAGCTTCTGCGATGACTT 57.538 45.000 0.00 0.00 45.42 3.01
78 79 2.687700 ATTGAGCTTCTGCGATGACT 57.312 45.000 0.00 0.00 45.42 3.41
79 80 3.190079 TGTATTGAGCTTCTGCGATGAC 58.810 45.455 0.00 0.00 45.42 3.06
80 81 3.451526 CTGTATTGAGCTTCTGCGATGA 58.548 45.455 0.00 0.00 45.42 2.92
81 82 2.033065 GCTGTATTGAGCTTCTGCGATG 60.033 50.000 0.00 0.00 45.42 3.84
82 83 2.208431 GCTGTATTGAGCTTCTGCGAT 58.792 47.619 0.00 0.00 45.42 4.58
83 84 1.645034 GCTGTATTGAGCTTCTGCGA 58.355 50.000 0.00 0.00 45.42 5.10
84 85 0.299895 CGCTGTATTGAGCTTCTGCG 59.700 55.000 0.00 0.97 45.42 5.18
85 86 0.027324 GCGCTGTATTGAGCTTCTGC 59.973 55.000 0.00 0.00 36.77 4.26
86 87 0.299895 CGCGCTGTATTGAGCTTCTG 59.700 55.000 5.56 0.00 36.77 3.02
87 88 1.424493 GCGCGCTGTATTGAGCTTCT 61.424 55.000 26.67 0.00 36.77 2.85
88 89 1.011794 GCGCGCTGTATTGAGCTTC 60.012 57.895 26.67 0.00 36.77 3.86
89 90 2.802667 CGCGCGCTGTATTGAGCTT 61.803 57.895 30.48 0.00 36.77 3.74
90 91 3.257561 CGCGCGCTGTATTGAGCT 61.258 61.111 30.48 0.00 36.77 4.09
91 92 3.554692 ACGCGCGCTGTATTGAGC 61.555 61.111 32.58 0.00 35.46 4.26
92 93 1.955529 AACACGCGCGCTGTATTGAG 61.956 55.000 32.58 17.01 0.00 3.02
93 94 1.561717 AAACACGCGCGCTGTATTGA 61.562 50.000 32.58 0.00 0.00 2.57
94 95 1.154488 AAACACGCGCGCTGTATTG 60.154 52.632 32.58 21.85 0.00 1.90
95 96 1.154488 CAAACACGCGCGCTGTATT 60.154 52.632 32.58 20.39 0.00 1.89
96 97 1.837538 AACAAACACGCGCGCTGTAT 61.838 50.000 32.58 15.33 0.00 2.29
97 98 2.037913 AAACAAACACGCGCGCTGTA 62.038 50.000 32.58 0.00 0.00 2.74
98 99 3.389727 AAACAAACACGCGCGCTGT 62.390 52.632 32.58 28.03 0.00 4.40
99 100 2.626151 GAAACAAACACGCGCGCTG 61.626 57.895 32.58 27.36 0.00 5.18
100 101 2.351888 GAAACAAACACGCGCGCT 60.352 55.556 32.58 14.89 0.00 5.92
101 102 1.734359 TTTGAAACAAACACGCGCGC 61.734 50.000 32.58 23.91 0.00 6.86
102 103 0.843242 ATTTGAAACAAACACGCGCG 59.157 45.000 30.96 30.96 0.00 6.86
103 104 1.849219 TCATTTGAAACAAACACGCGC 59.151 42.857 5.73 0.00 0.00 6.86
104 105 4.491554 TTTCATTTGAAACAAACACGCG 57.508 36.364 3.53 3.53 38.94 6.01
114 115 7.434897 CGTTCTCTGATTTGGTTTCATTTGAAA 59.565 33.333 1.66 1.66 41.29 2.69
115 116 6.917477 CGTTCTCTGATTTGGTTTCATTTGAA 59.083 34.615 0.00 0.00 0.00 2.69
116 117 6.262049 TCGTTCTCTGATTTGGTTTCATTTGA 59.738 34.615 0.00 0.00 0.00 2.69
117 118 6.360681 GTCGTTCTCTGATTTGGTTTCATTTG 59.639 38.462 0.00 0.00 0.00 2.32
118 119 6.039270 TGTCGTTCTCTGATTTGGTTTCATTT 59.961 34.615 0.00 0.00 0.00 2.32
119 120 5.530915 TGTCGTTCTCTGATTTGGTTTCATT 59.469 36.000 0.00 0.00 0.00 2.57
120 121 5.049405 GTGTCGTTCTCTGATTTGGTTTCAT 60.049 40.000 0.00 0.00 0.00 2.57
121 122 4.272504 GTGTCGTTCTCTGATTTGGTTTCA 59.727 41.667 0.00 0.00 0.00 2.69
122 123 4.608445 CGTGTCGTTCTCTGATTTGGTTTC 60.608 45.833 0.00 0.00 0.00 2.78
123 124 3.247648 CGTGTCGTTCTCTGATTTGGTTT 59.752 43.478 0.00 0.00 0.00 3.27
124 125 2.800544 CGTGTCGTTCTCTGATTTGGTT 59.199 45.455 0.00 0.00 0.00 3.67
125 126 2.223971 ACGTGTCGTTCTCTGATTTGGT 60.224 45.455 0.00 0.00 36.35 3.67
126 127 2.155732 CACGTGTCGTTCTCTGATTTGG 59.844 50.000 7.58 0.00 38.32 3.28
127 128 2.410262 GCACGTGTCGTTCTCTGATTTG 60.410 50.000 18.38 0.00 38.32 2.32
128 129 1.792949 GCACGTGTCGTTCTCTGATTT 59.207 47.619 18.38 0.00 38.32 2.17
129 130 1.269569 TGCACGTGTCGTTCTCTGATT 60.270 47.619 18.38 0.00 38.32 2.57
130 131 0.313987 TGCACGTGTCGTTCTCTGAT 59.686 50.000 18.38 0.00 38.32 2.90
131 132 0.594028 GTGCACGTGTCGTTCTCTGA 60.594 55.000 18.38 0.00 38.32 3.27
132 133 0.595053 AGTGCACGTGTCGTTCTCTG 60.595 55.000 18.38 0.00 38.32 3.35
135 136 0.318445 GGTAGTGCACGTGTCGTTCT 60.318 55.000 18.38 10.62 38.32 3.01
139 140 0.731514 ATTCGGTAGTGCACGTGTCG 60.732 55.000 18.38 13.94 0.00 4.35
152 153 4.556898 GCATACTGATCGTGTAGATTCGGT 60.557 45.833 4.99 0.00 40.26 4.69
192 193 3.448301 TCAATCTTAATTGGCTTGGGCAG 59.552 43.478 0.00 0.00 42.19 4.85
224 226 1.798223 TGAATTGTTTCGTCGAGCAGG 59.202 47.619 0.00 0.00 34.39 4.85
225 227 2.718789 CGTGAATTGTTTCGTCGAGCAG 60.719 50.000 0.00 0.00 35.39 4.24
226 228 1.191425 CGTGAATTGTTTCGTCGAGCA 59.809 47.619 0.00 0.00 35.39 4.26
238 240 2.282555 CGATCCAGTGTAGCGTGAATTG 59.717 50.000 0.00 0.00 0.00 2.32
247 249 2.417516 CGGGCCGATCCAGTGTAG 59.582 66.667 24.41 0.00 36.21 2.74
248 250 3.151710 CCGGGCCGATCCAGTGTA 61.152 66.667 30.79 0.00 36.21 2.90
326 334 1.608590 CCGGCCGATCATTGCTTATTT 59.391 47.619 30.73 0.00 0.00 1.40
366 380 2.663602 CGAGCTGTGTATCTGTGAACAC 59.336 50.000 0.00 0.00 44.97 3.32
369 383 1.732405 CGCGAGCTGTGTATCTGTGAA 60.732 52.381 0.00 0.00 0.00 3.18
373 387 1.142185 CCACGCGAGCTGTGTATCTG 61.142 60.000 15.93 0.00 39.94 2.90
376 390 2.509336 GCCACGCGAGCTGTGTAT 60.509 61.111 15.93 0.00 39.94 2.29
377 391 3.507597 TTGCCACGCGAGCTGTGTA 62.508 57.895 15.93 0.00 39.94 2.90
378 392 4.908687 TTGCCACGCGAGCTGTGT 62.909 61.111 15.93 0.00 43.63 3.72
379 393 4.374702 GTTGCCACGCGAGCTGTG 62.375 66.667 15.93 0.00 37.09 3.66
387 401 3.353836 ATGACACGGTTGCCACGC 61.354 61.111 0.00 0.00 34.00 5.34
423 458 3.136123 CCAGTCCATGGGCGCAAG 61.136 66.667 11.52 2.58 46.36 4.01
424 459 3.918253 GTCCAGTCCATGGGCGCAA 62.918 63.158 11.52 0.00 45.71 4.85
425 460 4.408821 GTCCAGTCCATGGGCGCA 62.409 66.667 11.52 5.70 45.71 6.09
431 466 0.107800 CAGGAGCAGTCCAGTCCATG 60.108 60.000 0.00 0.00 46.80 3.66
432 467 1.908340 GCAGGAGCAGTCCAGTCCAT 61.908 60.000 0.00 0.00 46.80 3.41
433 468 2.587247 GCAGGAGCAGTCCAGTCCA 61.587 63.158 0.00 0.00 46.80 4.02
434 469 2.267324 GCAGGAGCAGTCCAGTCC 59.733 66.667 0.00 0.00 46.80 3.85
435 470 2.116983 TTGGCAGGAGCAGTCCAGTC 62.117 60.000 0.00 0.00 46.80 3.51
436 471 1.495579 ATTGGCAGGAGCAGTCCAGT 61.496 55.000 0.00 0.00 46.80 4.00
532 579 3.988517 GGTACGTAGCTAATTGCCTGATC 59.011 47.826 17.27 0.00 44.23 2.92
550 598 4.972440 CCTGCGTACGTAGATAAAAGGTAC 59.028 45.833 31.25 4.00 35.75 3.34
551 599 4.498009 GCCTGCGTACGTAGATAAAAGGTA 60.498 45.833 31.25 0.00 0.00 3.08
552 600 3.736126 GCCTGCGTACGTAGATAAAAGGT 60.736 47.826 31.25 0.00 0.00 3.50
553 601 2.793232 GCCTGCGTACGTAGATAAAAGG 59.207 50.000 31.25 16.49 0.00 3.11
554 602 3.242248 GTGCCTGCGTACGTAGATAAAAG 59.758 47.826 31.25 16.03 0.00 2.27
555 603 3.181397 GTGCCTGCGTACGTAGATAAAA 58.819 45.455 31.25 11.16 0.00 1.52
556 604 2.792196 CGTGCCTGCGTACGTAGATAAA 60.792 50.000 31.25 12.78 42.38 1.40
557 605 1.268184 CGTGCCTGCGTACGTAGATAA 60.268 52.381 31.25 15.07 42.38 1.75
558 606 0.305617 CGTGCCTGCGTACGTAGATA 59.694 55.000 31.25 17.87 42.38 1.98
559 607 1.063649 CGTGCCTGCGTACGTAGAT 59.936 57.895 31.25 0.00 42.38 1.98
560 608 2.481919 CGTGCCTGCGTACGTAGA 59.518 61.111 31.25 12.43 42.38 2.59
581 629 3.814268 TACTCCGGCCGTACGTGC 61.814 66.667 26.12 16.33 0.00 5.34
582 630 2.100991 GTACTCCGGCCGTACGTG 59.899 66.667 26.12 12.26 0.00 4.49
585 633 1.090052 ACTACGTACTCCGGCCGTAC 61.090 60.000 26.12 18.64 42.24 3.67
586 634 0.462375 TACTACGTACTCCGGCCGTA 59.538 55.000 26.12 7.53 42.24 4.02
587 635 1.090052 GTACTACGTACTCCGGCCGT 61.090 60.000 26.12 8.42 42.24 5.68
588 636 1.643832 GTACTACGTACTCCGGCCG 59.356 63.158 21.04 21.04 42.24 6.13
589 637 1.643832 CGTACTACGTACTCCGGCC 59.356 63.158 0.00 0.00 42.24 6.13
630 678 0.106619 CTACTACCCTCCTCACGGCT 60.107 60.000 0.00 0.00 0.00 5.52
642 690 0.529992 GTCCCACGCATGCTACTACC 60.530 60.000 17.13 0.00 0.00 3.18
789 838 3.319405 AGATGACAGATCACGGTGTATCC 59.681 47.826 8.17 0.00 37.79 2.59
909 967 0.322546 GCAGTAACCCACTTCCCTGG 60.323 60.000 0.00 0.00 34.26 4.45
920 978 1.063469 GTGTGTGTGTGTGCAGTAACC 59.937 52.381 0.00 0.00 0.00 2.85
928 986 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
929 987 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
930 988 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
931 989 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
932 990 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
933 991 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
934 992 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
935 993 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
936 994 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
937 995 1.824852 TCTCTCTGTGTGTGTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
938 996 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
939 997 2.360483 CTCTCTCTCTGTGTGTGTGTGT 59.640 50.000 0.00 0.00 0.00 3.72
940 998 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
941 999 2.884012 CTCTCTCTCTCTGTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
942 1000 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
943 1001 3.072330 TCTCTCTCTCTCTCTGTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
944 1002 3.673902 TCTCTCTCTCTCTCTGTGTGTG 58.326 50.000 0.00 0.00 0.00 3.82
957 1015 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
963 1021 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
964 1022 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
965 1023 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
966 1024 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
967 1025 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
968 1026 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
969 1027 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
970 1028 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
971 1029 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
972 1030 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
973 1031 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
974 1032 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
975 1033 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
976 1034 4.261405 CGTCTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
977 1035 3.634448 CGTCTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
978 1036 3.632604 TCGTCTCTCTCTCTCTCTCTCTC 59.367 52.174 0.00 0.00 0.00 3.20
979 1037 3.632333 TCGTCTCTCTCTCTCTCTCTCT 58.368 50.000 0.00 0.00 0.00 3.10
980 1038 4.302455 CATCGTCTCTCTCTCTCTCTCTC 58.698 52.174 0.00 0.00 0.00 3.20
981 1039 3.070159 CCATCGTCTCTCTCTCTCTCTCT 59.930 52.174 0.00 0.00 0.00 3.10
982 1040 3.069586 TCCATCGTCTCTCTCTCTCTCTC 59.930 52.174 0.00 0.00 0.00 3.20
983 1041 3.038280 TCCATCGTCTCTCTCTCTCTCT 58.962 50.000 0.00 0.00 0.00 3.10
984 1042 3.469008 TCCATCGTCTCTCTCTCTCTC 57.531 52.381 0.00 0.00 0.00 3.20
985 1043 3.554960 CGATCCATCGTCTCTCTCTCTCT 60.555 52.174 0.55 0.00 44.74 3.10
986 1044 2.736721 CGATCCATCGTCTCTCTCTCTC 59.263 54.545 0.55 0.00 44.74 3.20
987 1045 2.766313 CGATCCATCGTCTCTCTCTCT 58.234 52.381 0.55 0.00 44.74 3.10
1067 1466 8.900781 CATGAATCAATTGAGGAACAGAATAGT 58.099 33.333 14.54 0.00 0.00 2.12
1071 1470 6.128200 CGACATGAATCAATTGAGGAACAGAA 60.128 38.462 14.54 0.00 0.00 3.02
1097 1496 1.192757 CGTACTCGATCGCCTACTCTG 59.807 57.143 11.09 0.00 39.71 3.35
1105 1504 0.926174 CACTGCTCGTACTCGATCGC 60.926 60.000 11.09 0.00 45.21 4.58
1107 1506 0.926174 CGCACTGCTCGTACTCGATC 60.926 60.000 0.00 0.00 45.21 3.69
1108 1507 1.062685 CGCACTGCTCGTACTCGAT 59.937 57.895 0.00 0.00 45.21 3.59
1109 1508 1.015607 TACGCACTGCTCGTACTCGA 61.016 55.000 0.00 0.00 44.12 4.04
1114 1513 1.154357 CACGTACGCACTGCTCGTA 60.154 57.895 16.72 1.32 40.89 3.43
1115 1514 2.196382 ATCACGTACGCACTGCTCGT 62.196 55.000 16.72 4.91 43.20 4.18
1120 1519 0.093535 CAAGCATCACGTACGCACTG 59.906 55.000 16.72 10.95 0.00 3.66
1125 1524 1.007422 CGTAAGCAAGCATCACGTACG 60.007 52.381 15.01 15.01 35.95 3.67
1136 1541 5.973651 ACATGTATGATCACGTAAGCAAG 57.026 39.130 0.00 0.00 45.62 4.01
1142 1547 4.368315 GCTCCAACATGTATGATCACGTA 58.632 43.478 0.00 0.00 0.00 3.57
1144 1549 2.219445 CGCTCCAACATGTATGATCACG 59.781 50.000 0.00 0.22 0.00 4.35
1145 1550 2.545526 CCGCTCCAACATGTATGATCAC 59.454 50.000 0.00 0.00 0.00 3.06
1163 1568 3.741476 CTTGCCAGAACCTGCCGC 61.741 66.667 0.00 0.00 0.00 6.53
1173 1578 3.429141 CAGCACCGCTCTTGCCAG 61.429 66.667 0.00 0.00 41.18 4.85
1178 1583 4.400961 GCCCTCAGCACCGCTCTT 62.401 66.667 0.00 0.00 42.97 2.85
1344 1755 2.277692 CACAAGCCATCGCGCATG 60.278 61.111 8.75 10.44 41.18 4.06
1345 1756 2.747460 ACACAAGCCATCGCGCAT 60.747 55.556 8.75 0.00 41.18 4.73
1346 1757 3.725459 CACACAAGCCATCGCGCA 61.725 61.111 8.75 0.00 41.18 6.09
1348 1759 2.174107 CACACACAAGCCATCGCG 59.826 61.111 0.00 0.00 41.18 5.87
1349 1760 2.126734 GCACACACAAGCCATCGC 60.127 61.111 0.00 0.00 0.00 4.58
1350 1761 2.174107 CGCACACACAAGCCATCG 59.826 61.111 0.00 0.00 0.00 3.84
1351 1762 1.081906 CACGCACACACAAGCCATC 60.082 57.895 0.00 0.00 0.00 3.51
1352 1763 1.823470 ACACGCACACACAAGCCAT 60.823 52.632 0.00 0.00 0.00 4.40
1353 1764 2.437537 ACACGCACACACAAGCCA 60.438 55.556 0.00 0.00 0.00 4.75
1376 1816 2.588034 GTATTCGTCAGCCGGCCC 60.588 66.667 26.15 10.88 37.11 5.80
1390 1830 2.434185 CAGTGCCGCCACACGTAT 60.434 61.111 0.00 0.00 45.45 3.06
1574 2033 4.956700 AGGAGTAAGACAAGATTGATCCGA 59.043 41.667 0.00 0.00 0.00 4.55
1585 2044 1.735700 CGCGCATCAGGAGTAAGACAA 60.736 52.381 8.75 0.00 0.00 3.18
1589 2048 1.478137 GTACGCGCATCAGGAGTAAG 58.522 55.000 5.73 0.00 0.00 2.34
1676 2152 0.247736 CCACCTTCTCCTTCGTCAGG 59.752 60.000 0.00 0.00 45.64 3.86
1682 2158 1.002011 GTGGCCCACCTTCTCCTTC 60.002 63.158 1.17 0.00 36.63 3.46
1692 2168 0.038166 TTGGAGAGAATGTGGCCCAC 59.962 55.000 7.01 7.01 34.56 4.61
1742 2218 3.194116 CCTGAACCAAGCTAAGTACCGTA 59.806 47.826 0.00 0.00 0.00 4.02
1744 2220 2.232941 TCCTGAACCAAGCTAAGTACCG 59.767 50.000 0.00 0.00 0.00 4.02
1745 2221 3.597255 GTCCTGAACCAAGCTAAGTACC 58.403 50.000 0.00 0.00 0.00 3.34
1746 2222 3.251571 CGTCCTGAACCAAGCTAAGTAC 58.748 50.000 0.00 0.00 0.00 2.73
1776 2262 2.864946 CTCGTCATCTGCAGGAATCAAG 59.135 50.000 15.13 1.86 0.00 3.02
1780 2266 0.179062 GCCTCGTCATCTGCAGGAAT 60.179 55.000 15.13 0.00 0.00 3.01
1785 2271 1.079612 CTGTGCCTCGTCATCTGCA 60.080 57.895 0.00 0.00 0.00 4.41
1807 2293 1.726791 CATGTTCTGTCGTCGAAAGGG 59.273 52.381 12.50 0.00 0.00 3.95
1808 2294 2.663602 CTCATGTTCTGTCGTCGAAAGG 59.336 50.000 12.50 0.00 0.00 3.11
1814 2300 1.071605 GCACCTCATGTTCTGTCGTC 58.928 55.000 0.00 0.00 0.00 4.20
1819 2305 0.877071 GTGTGGCACCTCATGTTCTG 59.123 55.000 16.26 0.00 0.00 3.02
1823 2309 0.324943 GGTAGTGTGGCACCTCATGT 59.675 55.000 16.26 0.00 34.49 3.21
1826 2312 4.639726 AGGTAGTGTGGCACCTCA 57.360 55.556 16.26 0.00 41.44 3.86
1858 2346 7.762588 AATACTAGCACTAATCCATCTACGT 57.237 36.000 0.00 0.00 0.00 3.57
2428 2924 5.563751 CGATTTTACAAGTCCAAACGACATG 59.436 40.000 0.00 0.00 44.66 3.21
2429 2925 5.467399 TCGATTTTACAAGTCCAAACGACAT 59.533 36.000 0.00 0.00 44.66 3.06
2430 2926 4.809958 TCGATTTTACAAGTCCAAACGACA 59.190 37.500 0.00 0.00 44.66 4.35
2431 2927 5.333046 TCGATTTTACAAGTCCAAACGAC 57.667 39.130 0.00 0.00 42.32 4.34
2432 2928 5.987777 TTCGATTTTACAAGTCCAAACGA 57.012 34.783 0.00 0.00 0.00 3.85
2433 2929 5.793457 GGATTCGATTTTACAAGTCCAAACG 59.207 40.000 0.00 0.00 0.00 3.60
2434 2930 6.909909 AGGATTCGATTTTACAAGTCCAAAC 58.090 36.000 0.00 0.00 0.00 2.93
2435 2931 7.013846 ACAAGGATTCGATTTTACAAGTCCAAA 59.986 33.333 0.00 0.00 0.00 3.28
2436 2932 6.488683 ACAAGGATTCGATTTTACAAGTCCAA 59.511 34.615 0.00 0.00 0.00 3.53
2437 2933 6.001460 ACAAGGATTCGATTTTACAAGTCCA 58.999 36.000 0.00 0.00 0.00 4.02
2438 2934 6.496338 ACAAGGATTCGATTTTACAAGTCC 57.504 37.500 0.00 0.00 0.00 3.85
2443 2939 8.988934 GCTCATATACAAGGATTCGATTTTACA 58.011 33.333 0.00 0.00 0.00 2.41
2444 2940 8.988934 TGCTCATATACAAGGATTCGATTTTAC 58.011 33.333 0.00 0.00 0.00 2.01
2445 2941 9.208022 CTGCTCATATACAAGGATTCGATTTTA 57.792 33.333 0.00 0.00 0.00 1.52
2446 2942 7.308229 GCTGCTCATATACAAGGATTCGATTTT 60.308 37.037 0.00 0.00 0.00 1.82
2447 2943 6.148480 GCTGCTCATATACAAGGATTCGATTT 59.852 38.462 0.00 0.00 0.00 2.17
2448 2944 5.641209 GCTGCTCATATACAAGGATTCGATT 59.359 40.000 0.00 0.00 0.00 3.34
2449 2945 5.046735 AGCTGCTCATATACAAGGATTCGAT 60.047 40.000 0.00 0.00 0.00 3.59
2450 2946 4.281941 AGCTGCTCATATACAAGGATTCGA 59.718 41.667 0.00 0.00 0.00 3.71
2451 2947 4.564041 AGCTGCTCATATACAAGGATTCG 58.436 43.478 0.00 0.00 0.00 3.34
2452 2948 6.589523 CAGTAGCTGCTCATATACAAGGATTC 59.410 42.308 4.91 0.00 0.00 2.52
2453 2949 6.462500 CAGTAGCTGCTCATATACAAGGATT 58.538 40.000 4.91 0.00 0.00 3.01
2454 2950 5.046735 CCAGTAGCTGCTCATATACAAGGAT 60.047 44.000 4.91 0.00 0.00 3.24
2455 2951 4.281941 CCAGTAGCTGCTCATATACAAGGA 59.718 45.833 4.91 0.00 0.00 3.36
2456 2952 4.564041 CCAGTAGCTGCTCATATACAAGG 58.436 47.826 4.91 1.12 0.00 3.61
2457 2953 3.993081 GCCAGTAGCTGCTCATATACAAG 59.007 47.826 4.91 0.00 38.99 3.16
2458 2954 3.387699 TGCCAGTAGCTGCTCATATACAA 59.612 43.478 4.91 0.00 44.23 2.41
2459 2955 2.965147 TGCCAGTAGCTGCTCATATACA 59.035 45.455 4.91 0.00 44.23 2.29
2460 2956 3.667497 TGCCAGTAGCTGCTCATATAC 57.333 47.619 4.91 0.00 44.23 1.47
2461 2957 4.897509 AATGCCAGTAGCTGCTCATATA 57.102 40.909 4.91 0.00 44.23 0.86
2462 2958 3.784511 AATGCCAGTAGCTGCTCATAT 57.215 42.857 4.91 0.00 44.23 1.78
2463 2959 4.897509 ATAATGCCAGTAGCTGCTCATA 57.102 40.909 4.91 0.00 44.23 2.15
2464 2960 3.784511 ATAATGCCAGTAGCTGCTCAT 57.215 42.857 4.91 0.28 44.23 2.90
2465 2961 3.208594 CAATAATGCCAGTAGCTGCTCA 58.791 45.455 4.91 0.00 44.23 4.26
2466 2962 2.551459 CCAATAATGCCAGTAGCTGCTC 59.449 50.000 4.91 0.00 44.23 4.26
2467 2963 2.092212 ACCAATAATGCCAGTAGCTGCT 60.092 45.455 7.57 7.57 44.23 4.24
2468 2964 2.301346 ACCAATAATGCCAGTAGCTGC 58.699 47.619 0.00 0.00 44.23 5.25
2469 2965 3.067180 CCAACCAATAATGCCAGTAGCTG 59.933 47.826 0.00 0.00 44.23 4.24
2470 2966 3.290710 CCAACCAATAATGCCAGTAGCT 58.709 45.455 0.00 0.00 44.23 3.32
2471 2967 2.223805 GCCAACCAATAATGCCAGTAGC 60.224 50.000 0.00 0.00 44.14 3.58
2472 2968 2.362077 GGCCAACCAATAATGCCAGTAG 59.638 50.000 0.00 0.00 41.76 2.57
2473 2969 2.024464 AGGCCAACCAATAATGCCAGTA 60.024 45.455 5.01 0.00 44.60 2.74
2474 2970 1.194218 GGCCAACCAATAATGCCAGT 58.806 50.000 0.00 0.00 41.76 4.00
2475 2971 1.488390 AGGCCAACCAATAATGCCAG 58.512 50.000 5.01 0.00 44.60 4.85
2476 2972 2.836636 TAGGCCAACCAATAATGCCA 57.163 45.000 5.01 0.00 44.60 4.92
2477 2973 3.006859 GGAATAGGCCAACCAATAATGCC 59.993 47.826 5.01 0.00 42.48 4.40
2478 2974 3.305335 CGGAATAGGCCAACCAATAATGC 60.305 47.826 5.01 0.00 39.06 3.56
2479 2975 3.888930 ACGGAATAGGCCAACCAATAATG 59.111 43.478 5.01 0.00 39.06 1.90
2480 2976 4.178956 ACGGAATAGGCCAACCAATAAT 57.821 40.909 5.01 0.00 39.06 1.28
2481 2977 3.655615 ACGGAATAGGCCAACCAATAA 57.344 42.857 5.01 0.00 39.06 1.40
2482 2978 3.655615 AACGGAATAGGCCAACCAATA 57.344 42.857 5.01 0.00 39.06 1.90
2483 2979 2.525105 AACGGAATAGGCCAACCAAT 57.475 45.000 5.01 0.00 39.06 3.16
2484 2980 3.083293 GTTAACGGAATAGGCCAACCAA 58.917 45.455 5.01 0.00 39.06 3.67
2485 2981 2.713877 GTTAACGGAATAGGCCAACCA 58.286 47.619 5.01 0.00 39.06 3.67
2486 2982 1.667212 CGTTAACGGAATAGGCCAACC 59.333 52.381 20.24 1.04 35.37 3.77
2499 2995 3.884900 CCAGAAGGCCCGTTAACG 58.115 61.111 20.99 20.99 39.44 3.18
2516 3012 1.751351 GAATCCAAACAGGCCCTAAGC 59.249 52.381 0.00 0.00 42.60 3.09
2517 3013 3.085952 TGAATCCAAACAGGCCCTAAG 57.914 47.619 0.00 0.00 37.29 2.18
2518 3014 3.364549 CATGAATCCAAACAGGCCCTAA 58.635 45.455 0.00 0.00 37.29 2.69
2519 3015 2.949963 GCATGAATCCAAACAGGCCCTA 60.950 50.000 0.00 0.00 37.76 3.53
2520 3016 1.856629 CATGAATCCAAACAGGCCCT 58.143 50.000 0.00 0.00 37.29 5.19
2521 3017 0.176449 GCATGAATCCAAACAGGCCC 59.824 55.000 0.00 0.00 37.76 5.80
2522 3018 3.746900 GCATGAATCCAAACAGGCC 57.253 52.632 0.00 0.00 37.76 5.19
2523 3019 0.896923 TGGCATGAATCCAAACAGGC 59.103 50.000 0.00 0.00 41.93 4.85
2524 3020 3.527533 CATTGGCATGAATCCAAACAGG 58.472 45.455 7.28 0.00 45.63 4.00
2525 3021 2.933906 GCATTGGCATGAATCCAAACAG 59.066 45.455 7.28 3.15 45.63 3.16
2526 3022 2.975266 GCATTGGCATGAATCCAAACA 58.025 42.857 7.28 0.00 45.63 2.83
2541 3037 2.413437 TTTTGGTCGGGCGTGCATTG 62.413 55.000 0.00 0.00 0.00 2.82
2542 3038 1.739338 TTTTTGGTCGGGCGTGCATT 61.739 50.000 0.00 0.00 0.00 3.56
2543 3039 2.141122 CTTTTTGGTCGGGCGTGCAT 62.141 55.000 0.00 0.00 0.00 3.96
2544 3040 2.829003 TTTTTGGTCGGGCGTGCA 60.829 55.556 0.00 0.00 0.00 4.57
2545 3041 2.050442 CTTTTTGGTCGGGCGTGC 60.050 61.111 0.00 0.00 0.00 5.34
2546 3042 0.593773 CAACTTTTTGGTCGGGCGTG 60.594 55.000 0.00 0.00 0.00 5.34
2547 3043 1.730451 CCAACTTTTTGGTCGGGCGT 61.730 55.000 0.00 0.00 46.63 5.68
2548 3044 1.007849 CCAACTTTTTGGTCGGGCG 60.008 57.895 0.00 0.00 46.63 6.13
2556 3052 2.100087 ACGTGGGTTAGCCAACTTTTTG 59.900 45.455 4.13 0.00 36.53 2.44
2557 3053 2.380941 ACGTGGGTTAGCCAACTTTTT 58.619 42.857 4.13 0.00 36.53 1.94
2558 3054 2.061509 ACGTGGGTTAGCCAACTTTT 57.938 45.000 4.13 0.00 36.53 2.27
2559 3055 2.934886 TACGTGGGTTAGCCAACTTT 57.065 45.000 4.13 0.00 36.53 2.66
2560 3056 3.428413 AATACGTGGGTTAGCCAACTT 57.572 42.857 4.13 0.00 36.53 2.66
2561 3057 3.428413 AAATACGTGGGTTAGCCAACT 57.572 42.857 4.13 0.00 36.53 3.16
2562 3058 3.366577 CCAAAATACGTGGGTTAGCCAAC 60.367 47.826 4.13 0.00 35.29 3.77
2563 3059 2.820787 CCAAAATACGTGGGTTAGCCAA 59.179 45.455 4.13 0.00 36.17 4.52
2564 3060 2.438411 CCAAAATACGTGGGTTAGCCA 58.562 47.619 0.00 0.00 36.17 4.75
2565 3061 1.133598 GCCAAAATACGTGGGTTAGCC 59.866 52.381 0.00 0.00 36.58 3.93
2566 3062 2.089201 AGCCAAAATACGTGGGTTAGC 58.911 47.619 0.00 0.00 44.41 3.09
2567 3063 2.159435 GCAGCCAAAATACGTGGGTTAG 60.159 50.000 0.00 0.00 44.41 2.34
2568 3064 1.813786 GCAGCCAAAATACGTGGGTTA 59.186 47.619 0.00 0.00 44.41 2.85
2569 3065 0.601057 GCAGCCAAAATACGTGGGTT 59.399 50.000 0.00 0.00 44.41 4.11
2571 3067 0.171007 CAGCAGCCAAAATACGTGGG 59.829 55.000 0.00 0.00 36.58 4.61
2572 3068 0.881118 ACAGCAGCCAAAATACGTGG 59.119 50.000 0.00 0.00 39.33 4.94
2573 3069 2.704725 AACAGCAGCCAAAATACGTG 57.295 45.000 0.00 0.00 0.00 4.49
2574 3070 2.288152 CCAAACAGCAGCCAAAATACGT 60.288 45.455 0.00 0.00 0.00 3.57
2575 3071 2.030363 TCCAAACAGCAGCCAAAATACG 60.030 45.455 0.00 0.00 0.00 3.06
2576 3072 3.658757 TCCAAACAGCAGCCAAAATAC 57.341 42.857 0.00 0.00 0.00 1.89
2577 3073 3.119531 CGATCCAAACAGCAGCCAAAATA 60.120 43.478 0.00 0.00 0.00 1.40
2578 3074 2.353011 CGATCCAAACAGCAGCCAAAAT 60.353 45.455 0.00 0.00 0.00 1.82
2579 3075 1.000385 CGATCCAAACAGCAGCCAAAA 60.000 47.619 0.00 0.00 0.00 2.44
2580 3076 0.597568 CGATCCAAACAGCAGCCAAA 59.402 50.000 0.00 0.00 0.00 3.28
2581 3077 0.250684 TCGATCCAAACAGCAGCCAA 60.251 50.000 0.00 0.00 0.00 4.52
2582 3078 0.955428 GTCGATCCAAACAGCAGCCA 60.955 55.000 0.00 0.00 0.00 4.75
2583 3079 1.796796 GTCGATCCAAACAGCAGCC 59.203 57.895 0.00 0.00 0.00 4.85
2584 3080 1.421485 CGTCGATCCAAACAGCAGC 59.579 57.895 0.00 0.00 0.00 5.25
2585 3081 1.421485 GCGTCGATCCAAACAGCAG 59.579 57.895 0.00 0.00 0.00 4.24
2586 3082 2.032634 GGCGTCGATCCAAACAGCA 61.033 57.895 0.00 0.00 0.00 4.41
2587 3083 1.573829 TTGGCGTCGATCCAAACAGC 61.574 55.000 16.62 1.40 40.35 4.40
2588 3084 0.871722 TTTGGCGTCGATCCAAACAG 59.128 50.000 22.85 0.00 45.60 3.16
2589 3085 3.008141 TTTGGCGTCGATCCAAACA 57.992 47.368 22.85 9.24 45.60 2.83
2606 3102 1.047801 AGTTGGGCGAGCCAATTTTT 58.952 45.000 16.65 0.00 37.98 1.94
2607 3103 0.318120 CAGTTGGGCGAGCCAATTTT 59.682 50.000 16.65 0.00 37.98 1.82
2608 3104 1.535204 CCAGTTGGGCGAGCCAATTT 61.535 55.000 16.65 0.00 37.98 1.82
2609 3105 1.978617 CCAGTTGGGCGAGCCAATT 60.979 57.895 16.65 2.91 37.98 2.32
2610 3106 2.361610 CCAGTTGGGCGAGCCAAT 60.362 61.111 16.65 0.00 37.98 3.16
2620 3116 4.785453 GAGAGCCGGGCCAGTTGG 62.785 72.222 17.02 0.89 38.53 3.77
2621 3117 4.785453 GGAGAGCCGGGCCAGTTG 62.785 72.222 17.02 0.00 0.00 3.16
2631 3127 0.466124 AAATAGCACGGAGGAGAGCC 59.534 55.000 0.00 0.00 0.00 4.70
2632 3128 1.576356 CAAATAGCACGGAGGAGAGC 58.424 55.000 0.00 0.00 0.00 4.09
2633 3129 1.576356 GCAAATAGCACGGAGGAGAG 58.424 55.000 0.00 0.00 44.79 3.20
2634 3130 0.179111 CGCAAATAGCACGGAGGAGA 60.179 55.000 0.00 0.00 46.13 3.71
2635 3131 1.766143 GCGCAAATAGCACGGAGGAG 61.766 60.000 0.30 0.00 46.13 3.69
2636 3132 1.813753 GCGCAAATAGCACGGAGGA 60.814 57.895 0.30 0.00 46.13 3.71
2637 3133 2.709475 GCGCAAATAGCACGGAGG 59.291 61.111 0.30 0.00 46.13 4.30
2638 3134 1.643868 TTGGCGCAAATAGCACGGAG 61.644 55.000 10.83 0.00 46.13 4.63
2639 3135 1.672682 TTGGCGCAAATAGCACGGA 60.673 52.632 10.83 0.00 46.13 4.69
2640 3136 1.514014 GTTGGCGCAAATAGCACGG 60.514 57.895 10.83 0.00 46.13 4.94
2641 3137 1.863012 CGTTGGCGCAAATAGCACG 60.863 57.895 10.83 0.00 46.13 5.34
2642 3138 4.056097 CGTTGGCGCAAATAGCAC 57.944 55.556 10.83 0.00 46.13 4.40
2673 3169 3.880846 GAAGCATTCCGGCGCCTG 61.881 66.667 26.68 19.63 39.83 4.85
2695 3191 3.194062 CAAAGTCACCACGCCAATTTTT 58.806 40.909 0.00 0.00 0.00 1.94
2696 3192 2.482839 CCAAAGTCACCACGCCAATTTT 60.483 45.455 0.00 0.00 0.00 1.82
2697 3193 1.068434 CCAAAGTCACCACGCCAATTT 59.932 47.619 0.00 0.00 0.00 1.82
2698 3194 0.673437 CCAAAGTCACCACGCCAATT 59.327 50.000 0.00 0.00 0.00 2.32
2699 3195 0.467290 ACCAAAGTCACCACGCCAAT 60.467 50.000 0.00 0.00 0.00 3.16
2700 3196 0.681564 AACCAAAGTCACCACGCCAA 60.682 50.000 0.00 0.00 0.00 4.52
2701 3197 1.077357 AACCAAAGTCACCACGCCA 60.077 52.632 0.00 0.00 0.00 5.69
2702 3198 1.358759 CAACCAAAGTCACCACGCC 59.641 57.895 0.00 0.00 0.00 5.68
2703 3199 0.454196 AACAACCAAAGTCACCACGC 59.546 50.000 0.00 0.00 0.00 5.34
2704 3200 1.740585 TCAACAACCAAAGTCACCACG 59.259 47.619 0.00 0.00 0.00 4.94
2705 3201 4.111916 CAATCAACAACCAAAGTCACCAC 58.888 43.478 0.00 0.00 0.00 4.16
2706 3202 4.383850 CAATCAACAACCAAAGTCACCA 57.616 40.909 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.