Multiple sequence alignment - TraesCS5A01G381300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G381300 chr5A 100.000 2867 0 0 1 2867 579241640 579244506 0.000000e+00 5295.0
1 TraesCS5A01G381300 chr5A 94.448 1405 70 1 415 1819 579325181 579326577 0.000000e+00 2156.0
2 TraesCS5A01G381300 chr5A 90.097 616 45 7 1836 2445 364168818 364168213 0.000000e+00 785.0
3 TraesCS5A01G381300 chr5A 89.723 613 43 8 1836 2445 34840308 34840903 0.000000e+00 765.0
4 TraesCS5A01G381300 chr5A 80.456 834 133 18 995 1819 579399908 579400720 6.790000e-171 610.0
5 TraesCS5A01G381300 chr5A 83.077 455 67 4 1365 1819 580212699 580212255 3.440000e-109 405.0
6 TraesCS5A01G381300 chr5A 90.476 210 20 0 1 210 322715031 322715240 7.820000e-71 278.0
7 TraesCS5A01G381300 chr5A 96.622 148 4 1 2453 2599 579326734 579326881 7.930000e-61 244.0
8 TraesCS5A01G381300 chr5A 89.286 84 3 3 2711 2793 579326930 579327008 1.820000e-17 100.0
9 TraesCS5A01G381300 chr5B 91.388 1254 85 11 577 1817 565503250 565502007 0.000000e+00 1696.0
10 TraesCS5A01G381300 chr5B 91.153 893 59 8 928 1817 565493213 565492338 0.000000e+00 1194.0
11 TraesCS5A01G381300 chr5B 83.954 779 107 10 1046 1819 565687238 565686473 0.000000e+00 730.0
12 TraesCS5A01G381300 chr5B 79.574 891 144 25 945 1819 565099602 565098734 1.140000e-168 603.0
13 TraesCS5A01G381300 chr5B 80.288 832 136 15 995 1819 565512579 565511769 1.140000e-168 603.0
14 TraesCS5A01G381300 chr5B 80.804 771 134 8 1052 1819 565154258 565153499 2.460000e-165 592.0
15 TraesCS5A01G381300 chr5B 78.784 839 135 29 996 1818 565509164 565508353 9.100000e-145 523.0
16 TraesCS5A01G381300 chr5B 88.089 361 19 3 2453 2792 565501848 565501491 9.560000e-110 407.0
17 TraesCS5A01G381300 chr5B 80.460 348 36 19 2466 2788 565545678 565545338 1.330000e-58 237.0
18 TraesCS5A01G381300 chr5B 94.595 148 7 1 2453 2599 565492179 565492032 7.990000e-56 228.0
19 TraesCS5A01G381300 chr5B 81.754 285 29 8 2453 2714 565508195 565507911 1.730000e-52 217.0
20 TraesCS5A01G381300 chr5B 78.674 347 44 19 2466 2788 565686303 565685963 1.350000e-48 204.0
21 TraesCS5A01G381300 chr5B 81.429 210 24 8 2597 2794 565685647 565685441 1.060000e-34 158.0
22 TraesCS5A01G381300 chr5B 89.333 75 7 1 2794 2867 711076084 711076010 3.040000e-15 93.5
23 TraesCS5A01G381300 chr5B 89.041 73 7 1 2796 2867 711084163 711084091 3.930000e-14 89.8
24 TraesCS5A01G381300 chr5D 90.411 1022 73 10 812 1817 460061884 460060872 0.000000e+00 1321.0
25 TraesCS5A01G381300 chr5D 81.325 830 130 13 995 1818 460073088 460072278 0.000000e+00 651.0
26 TraesCS5A01G381300 chr5D 83.412 639 76 11 1817 2445 380624062 380623444 1.490000e-157 566.0
27 TraesCS5A01G381300 chr5D 95.308 341 8 2 2453 2793 460060713 460060381 4.200000e-148 534.0
28 TraesCS5A01G381300 chr5D 81.769 373 34 13 422 788 460062217 460061873 6.050000e-72 281.0
29 TraesCS5A01G381300 chr5D 89.535 172 10 4 224 395 522209344 522209181 8.050000e-51 211.0
30 TraesCS5A01G381300 chr5D 88.068 176 13 2 224 399 356318821 356318654 4.840000e-48 202.0
31 TraesCS5A01G381300 chr3A 95.591 635 20 3 1817 2445 9136900 9137532 0.000000e+00 1011.0
32 TraesCS5A01G381300 chr3A 89.905 634 53 4 1821 2445 21315278 21315909 0.000000e+00 806.0
33 TraesCS5A01G381300 chr3A 90.453 618 47 5 1836 2445 668865873 668866486 0.000000e+00 804.0
34 TraesCS5A01G381300 chr4A 95.455 616 21 2 1817 2426 29382287 29382901 0.000000e+00 976.0
35 TraesCS5A01G381300 chr7B 93.717 573 28 3 1879 2445 543908537 543907967 0.000000e+00 852.0
36 TraesCS5A01G381300 chr7A 89.540 631 58 5 1817 2445 54921836 54922460 0.000000e+00 793.0
37 TraesCS5A01G381300 chr7A 84.466 206 28 2 4 208 465929310 465929108 1.740000e-47 200.0
38 TraesCS5A01G381300 chr1A 89.320 618 43 9 1836 2445 532432342 532432944 0.000000e+00 754.0
39 TraesCS5A01G381300 chr1A 85.864 191 19 2 225 415 530741687 530741869 2.250000e-46 196.0
40 TraesCS5A01G381300 chr1A 90.411 73 6 1 2796 2867 48256807 48256735 8.460000e-16 95.3
41 TraesCS5A01G381300 chr1A 89.333 75 7 1 2794 2867 48248727 48248653 3.040000e-15 93.5
42 TraesCS5A01G381300 chr1D 88.517 209 21 1 1 209 39863280 39863485 1.710000e-62 250.0
43 TraesCS5A01G381300 chr1D 89.937 159 8 2 224 382 387562956 387563106 6.270000e-47 198.0
44 TraesCS5A01G381300 chr6D 88.083 193 17 4 224 416 310519665 310519479 1.030000e-54 224.0
45 TraesCS5A01G381300 chr3B 87.245 196 21 2 224 415 769805954 769806149 1.340000e-53 220.0
46 TraesCS5A01G381300 chr3D 86.294 197 17 6 224 418 175553212 175553024 3.740000e-49 206.0
47 TraesCS5A01G381300 chr3D 83.582 201 18 5 9 209 37778852 37778667 1.060000e-39 174.0
48 TraesCS5A01G381300 chr4D 83.854 192 23 5 224 415 426517630 426517447 2.940000e-40 176.0
49 TraesCS5A01G381300 chr6B 83.420 193 21 7 224 415 67465527 67465709 4.910000e-38 169.0
50 TraesCS5A01G381300 chr6B 89.333 75 7 1 2794 2867 74676419 74676493 3.040000e-15 93.5
51 TraesCS5A01G381300 chr6A 100.000 74 0 0 2794 2867 367898772 367898845 1.390000e-28 137.0
52 TraesCS5A01G381300 chr6A 100.000 74 0 0 2794 2867 367906280 367906353 1.390000e-28 137.0
53 TraesCS5A01G381300 chr2A 100.000 74 0 0 2794 2867 556610521 556610448 1.390000e-28 137.0
54 TraesCS5A01G381300 chr2A 100.000 72 0 0 2796 2867 556617898 556617827 1.790000e-27 134.0
55 TraesCS5A01G381300 chr4B 89.333 75 7 1 2794 2867 568625804 568625878 3.040000e-15 93.5
56 TraesCS5A01G381300 chr4B 89.041 73 7 1 2796 2867 568617726 568617798 3.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G381300 chr5A 579241640 579244506 2866 False 5295.000000 5295 100.000000 1 2867 1 chr5A.!!$F3 2866
1 TraesCS5A01G381300 chr5A 579325181 579327008 1827 False 833.333333 2156 93.452000 415 2793 3 chr5A.!!$F5 2378
2 TraesCS5A01G381300 chr5A 364168213 364168818 605 True 785.000000 785 90.097000 1836 2445 1 chr5A.!!$R1 609
3 TraesCS5A01G381300 chr5A 34840308 34840903 595 False 765.000000 765 89.723000 1836 2445 1 chr5A.!!$F1 609
4 TraesCS5A01G381300 chr5A 579399908 579400720 812 False 610.000000 610 80.456000 995 1819 1 chr5A.!!$F4 824
5 TraesCS5A01G381300 chr5B 565501491 565503250 1759 True 1051.500000 1696 89.738500 577 2792 2 chr5B.!!$R7 2215
6 TraesCS5A01G381300 chr5B 565492032 565493213 1181 True 711.000000 1194 92.874000 928 2599 2 chr5B.!!$R6 1671
7 TraesCS5A01G381300 chr5B 565098734 565099602 868 True 603.000000 603 79.574000 945 1819 1 chr5B.!!$R1 874
8 TraesCS5A01G381300 chr5B 565153499 565154258 759 True 592.000000 592 80.804000 1052 1819 1 chr5B.!!$R2 767
9 TraesCS5A01G381300 chr5B 565507911 565512579 4668 True 447.666667 603 80.275333 995 2714 3 chr5B.!!$R8 1719
10 TraesCS5A01G381300 chr5B 565685441 565687238 1797 True 364.000000 730 81.352333 1046 2794 3 chr5B.!!$R9 1748
11 TraesCS5A01G381300 chr5D 460060381 460062217 1836 True 712.000000 1321 89.162667 422 2793 3 chr5D.!!$R5 2371
12 TraesCS5A01G381300 chr5D 460072278 460073088 810 True 651.000000 651 81.325000 995 1818 1 chr5D.!!$R3 823
13 TraesCS5A01G381300 chr5D 380623444 380624062 618 True 566.000000 566 83.412000 1817 2445 1 chr5D.!!$R2 628
14 TraesCS5A01G381300 chr3A 9136900 9137532 632 False 1011.000000 1011 95.591000 1817 2445 1 chr3A.!!$F1 628
15 TraesCS5A01G381300 chr3A 21315278 21315909 631 False 806.000000 806 89.905000 1821 2445 1 chr3A.!!$F2 624
16 TraesCS5A01G381300 chr3A 668865873 668866486 613 False 804.000000 804 90.453000 1836 2445 1 chr3A.!!$F3 609
17 TraesCS5A01G381300 chr4A 29382287 29382901 614 False 976.000000 976 95.455000 1817 2426 1 chr4A.!!$F1 609
18 TraesCS5A01G381300 chr7B 543907967 543908537 570 True 852.000000 852 93.717000 1879 2445 1 chr7B.!!$R1 566
19 TraesCS5A01G381300 chr7A 54921836 54922460 624 False 793.000000 793 89.540000 1817 2445 1 chr7A.!!$F1 628
20 TraesCS5A01G381300 chr1A 532432342 532432944 602 False 754.000000 754 89.320000 1836 2445 1 chr1A.!!$F2 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 382 0.041238 TCCCTCCATCAGTTCGGACT 59.959 55.0 0.0 0.0 36.25 3.85 F
1670 1717 0.037447 AGAGCAGAGTTCTTTGGGCC 59.963 55.0 0.0 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 1866 0.173255 AAATTTCGGCCGAATGCTGG 59.827 50.0 38.89 1.93 46.96 4.85 R
2813 6890 0.249573 AGCACTTGCCAATGTTGCAC 60.250 50.0 8.11 0.00 43.38 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.362476 GCCAGCGCCCAAAACCTG 62.362 66.667 2.29 0.00 0.00 4.00
23 24 4.362476 CCAGCGCCCAAAACCTGC 62.362 66.667 2.29 0.00 0.00 4.85
24 25 3.297620 CAGCGCCCAAAACCTGCT 61.298 61.111 2.29 0.00 36.05 4.24
25 26 3.297620 AGCGCCCAAAACCTGCTG 61.298 61.111 2.29 0.00 33.99 4.41
27 28 4.362476 CGCCCAAAACCTGCTGCC 62.362 66.667 0.00 0.00 0.00 4.85
28 29 3.233231 GCCCAAAACCTGCTGCCA 61.233 61.111 0.00 0.00 0.00 4.92
29 30 3.053828 CCCAAAACCTGCTGCCAG 58.946 61.111 0.00 0.00 38.85 4.85
30 31 1.531365 CCCAAAACCTGCTGCCAGA 60.531 57.895 0.00 0.00 41.77 3.86
31 32 1.530013 CCCAAAACCTGCTGCCAGAG 61.530 60.000 0.00 0.00 41.77 3.35
32 33 0.538057 CCAAAACCTGCTGCCAGAGA 60.538 55.000 0.00 0.00 41.77 3.10
33 34 0.879765 CAAAACCTGCTGCCAGAGAG 59.120 55.000 0.00 0.00 41.77 3.20
34 35 0.475906 AAAACCTGCTGCCAGAGAGT 59.524 50.000 0.00 0.00 41.77 3.24
35 36 0.250640 AAACCTGCTGCCAGAGAGTG 60.251 55.000 0.00 0.00 41.77 3.51
64 65 3.998672 GACCGCCCACCAGACGAA 61.999 66.667 0.00 0.00 0.00 3.85
65 66 3.934391 GACCGCCCACCAGACGAAG 62.934 68.421 0.00 0.00 0.00 3.79
67 68 4.680237 CGCCCACCAGACGAAGCA 62.680 66.667 0.00 0.00 0.00 3.91
68 69 3.050275 GCCCACCAGACGAAGCAC 61.050 66.667 0.00 0.00 0.00 4.40
69 70 2.425592 CCCACCAGACGAAGCACA 59.574 61.111 0.00 0.00 0.00 4.57
70 71 1.961277 CCCACCAGACGAAGCACAC 60.961 63.158 0.00 0.00 0.00 3.82
71 72 1.961277 CCACCAGACGAAGCACACC 60.961 63.158 0.00 0.00 0.00 4.16
72 73 1.227527 CACCAGACGAAGCACACCA 60.228 57.895 0.00 0.00 0.00 4.17
73 74 1.227556 ACCAGACGAAGCACACCAC 60.228 57.895 0.00 0.00 0.00 4.16
74 75 1.961277 CCAGACGAAGCACACCACC 60.961 63.158 0.00 0.00 0.00 4.61
75 76 2.029073 AGACGAAGCACACCACCG 59.971 61.111 0.00 0.00 0.00 4.94
76 77 3.712881 GACGAAGCACACCACCGC 61.713 66.667 0.00 0.00 0.00 5.68
133 134 3.849951 TCCGCCGCCAAGGAGATC 61.850 66.667 0.00 0.00 43.02 2.75
134 135 4.918201 CCGCCGCCAAGGAGATCC 62.918 72.222 0.00 0.00 43.02 3.36
135 136 4.918201 CGCCGCCAAGGAGATCCC 62.918 72.222 0.00 0.00 43.02 3.85
136 137 4.570874 GCCGCCAAGGAGATCCCC 62.571 72.222 0.00 0.00 45.00 4.81
137 138 2.770048 CCGCCAAGGAGATCCCCT 60.770 66.667 0.00 0.00 45.00 4.79
138 139 2.812619 CCGCCAAGGAGATCCCCTC 61.813 68.421 0.00 0.00 45.00 4.30
139 140 2.825264 GCCAAGGAGATCCCCTCG 59.175 66.667 0.00 0.00 42.89 4.63
140 141 2.825264 CCAAGGAGATCCCCTCGC 59.175 66.667 0.00 0.00 42.89 5.03
141 142 2.812619 CCAAGGAGATCCCCTCGCC 61.813 68.421 0.00 0.00 43.74 5.54
144 145 3.155167 GGAGATCCCCTCGCCGTT 61.155 66.667 0.00 0.00 42.89 4.44
145 146 2.107141 GAGATCCCCTCGCCGTTG 59.893 66.667 0.00 0.00 31.32 4.10
146 147 2.683933 AGATCCCCTCGCCGTTGT 60.684 61.111 0.00 0.00 0.00 3.32
147 148 2.240162 GAGATCCCCTCGCCGTTGTT 62.240 60.000 0.00 0.00 31.32 2.83
148 149 0.974010 AGATCCCCTCGCCGTTGTTA 60.974 55.000 0.00 0.00 0.00 2.41
149 150 0.808847 GATCCCCTCGCCGTTGTTAC 60.809 60.000 0.00 0.00 0.00 2.50
150 151 2.248086 ATCCCCTCGCCGTTGTTACC 62.248 60.000 0.00 0.00 0.00 2.85
151 152 2.344500 CCCTCGCCGTTGTTACCA 59.656 61.111 0.00 0.00 0.00 3.25
152 153 2.030958 CCCTCGCCGTTGTTACCAC 61.031 63.158 0.00 0.00 0.00 4.16
153 154 2.030958 CCTCGCCGTTGTTACCACC 61.031 63.158 0.00 0.00 0.00 4.61
154 155 2.356075 TCGCCGTTGTTACCACCG 60.356 61.111 0.00 0.00 0.00 4.94
155 156 3.416382 CGCCGTTGTTACCACCGG 61.416 66.667 0.00 0.00 43.22 5.28
156 157 3.051479 GCCGTTGTTACCACCGGG 61.051 66.667 6.32 0.00 40.74 5.73
175 176 3.458163 TCGCCTTCCGAATCGCCT 61.458 61.111 0.00 0.00 44.21 5.52
176 177 3.264897 CGCCTTCCGAATCGCCTG 61.265 66.667 0.00 0.00 40.02 4.85
177 178 2.897350 GCCTTCCGAATCGCCTGG 60.897 66.667 0.00 0.00 0.00 4.45
178 179 2.897350 CCTTCCGAATCGCCTGGC 60.897 66.667 9.11 9.11 0.00 4.85
179 180 2.897350 CTTCCGAATCGCCTGGCC 60.897 66.667 14.12 0.00 0.00 5.36
180 181 4.830765 TTCCGAATCGCCTGGCCG 62.831 66.667 14.12 10.59 0.00 6.13
182 183 4.215742 CCGAATCGCCTGGCCGTA 62.216 66.667 14.12 0.00 0.00 4.02
183 184 2.960129 CGAATCGCCTGGCCGTAC 60.960 66.667 14.12 1.89 0.00 3.67
184 185 2.960129 GAATCGCCTGGCCGTACG 60.960 66.667 14.12 8.69 0.00 3.67
185 186 3.420214 GAATCGCCTGGCCGTACGA 62.420 63.158 18.76 14.96 39.11 3.43
186 187 3.426117 AATCGCCTGGCCGTACGAG 62.426 63.158 18.76 6.13 38.04 4.18
188 189 4.554363 CGCCTGGCCGTACGAGAG 62.554 72.222 18.76 8.89 0.00 3.20
189 190 4.874977 GCCTGGCCGTACGAGAGC 62.875 72.222 18.76 11.80 0.00 4.09
207 208 2.579201 CGTTGGGACGCTCTCCAT 59.421 61.111 0.14 0.00 43.03 3.41
208 209 1.519455 CGTTGGGACGCTCTCCATC 60.519 63.158 0.14 0.00 43.03 3.51
209 210 1.153349 GTTGGGACGCTCTCCATCC 60.153 63.158 0.14 0.00 41.63 3.51
210 211 1.612146 TTGGGACGCTCTCCATCCA 60.612 57.895 0.14 0.00 41.63 3.41
211 212 1.899437 TTGGGACGCTCTCCATCCAC 61.899 60.000 0.14 0.00 41.63 4.02
212 213 2.060980 GGGACGCTCTCCATCCACT 61.061 63.158 0.14 0.00 41.63 4.00
213 214 1.617947 GGGACGCTCTCCATCCACTT 61.618 60.000 0.14 0.00 41.63 3.16
214 215 0.250513 GGACGCTCTCCATCCACTTT 59.749 55.000 0.00 0.00 39.21 2.66
215 216 1.339151 GGACGCTCTCCATCCACTTTT 60.339 52.381 0.00 0.00 39.21 2.27
216 217 1.734465 GACGCTCTCCATCCACTTTTG 59.266 52.381 0.00 0.00 0.00 2.44
217 218 1.072331 ACGCTCTCCATCCACTTTTGT 59.928 47.619 0.00 0.00 0.00 2.83
230 231 3.545703 CACTTTTGTGTCCTCAAGAGGT 58.454 45.455 15.36 0.00 44.15 3.85
231 232 3.561725 CACTTTTGTGTCCTCAAGAGGTC 59.438 47.826 15.36 10.77 44.15 3.85
232 233 4.684485 CACTTTTGTGTCCTCAAGAGGTCT 60.684 45.833 15.36 0.00 44.15 3.85
233 234 6.147561 CACTTTTGTGTCCTCAAGAGGTCTT 61.148 44.000 15.36 0.00 44.15 3.01
250 251 3.725754 TTGAGTTCAAGACCCTGCC 57.274 52.632 0.00 0.00 0.00 4.85
251 252 0.843309 TTGAGTTCAAGACCCTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
252 253 0.843309 TGAGTTCAAGACCCTGCCAA 59.157 50.000 0.00 0.00 0.00 4.52
253 254 1.239347 GAGTTCAAGACCCTGCCAAC 58.761 55.000 0.00 0.00 0.00 3.77
254 255 0.535102 AGTTCAAGACCCTGCCAACG 60.535 55.000 0.00 0.00 0.00 4.10
255 256 1.896660 TTCAAGACCCTGCCAACGC 60.897 57.895 0.00 0.00 0.00 4.84
256 257 2.594303 CAAGACCCTGCCAACGCA 60.594 61.111 0.00 0.00 44.78 5.24
271 272 5.795939 TGCCAACGCAGTATTAAATAAAACG 59.204 36.000 0.00 0.00 45.00 3.60
272 273 6.022821 GCCAACGCAGTATTAAATAAAACGA 58.977 36.000 0.00 0.00 45.00 3.85
273 274 6.689669 GCCAACGCAGTATTAAATAAAACGAT 59.310 34.615 0.00 0.00 45.00 3.73
274 275 7.219344 GCCAACGCAGTATTAAATAAAACGATT 59.781 33.333 0.00 0.00 45.00 3.34
275 276 8.730427 CCAACGCAGTATTAAATAAAACGATTC 58.270 33.333 0.00 0.00 45.00 2.52
276 277 9.485591 CAACGCAGTATTAAATAAAACGATTCT 57.514 29.630 0.00 0.00 45.00 2.40
277 278 9.485591 AACGCAGTATTAAATAAAACGATTCTG 57.514 29.630 0.00 0.00 45.00 3.02
278 279 7.638683 ACGCAGTATTAAATAAAACGATTCTGC 59.361 33.333 0.00 0.00 41.94 4.26
279 280 7.971697 GCAGTATTAAATAAAACGATTCTGCG 58.028 34.615 0.00 0.00 35.10 5.18
280 281 7.111593 GCAGTATTAAATAAAACGATTCTGCGG 59.888 37.037 0.00 0.00 35.10 5.69
281 282 8.120465 CAGTATTAAATAAAACGATTCTGCGGT 58.880 33.333 0.00 0.00 35.12 5.68
282 283 8.333186 AGTATTAAATAAAACGATTCTGCGGTC 58.667 33.333 0.00 0.00 35.12 4.79
283 284 6.730960 TTAAATAAAACGATTCTGCGGTCT 57.269 33.333 0.00 0.00 35.12 3.85
284 285 7.830940 TTAAATAAAACGATTCTGCGGTCTA 57.169 32.000 0.00 0.00 35.12 2.59
285 286 5.713822 AATAAAACGATTCTGCGGTCTAC 57.286 39.130 0.00 0.00 35.12 2.59
286 287 2.736144 AAACGATTCTGCGGTCTACA 57.264 45.000 0.00 0.00 35.12 2.74
287 288 1.992170 AACGATTCTGCGGTCTACAC 58.008 50.000 0.00 0.00 35.12 2.90
288 289 0.172803 ACGATTCTGCGGTCTACACC 59.827 55.000 0.00 0.00 39.69 4.16
298 299 1.673168 GGTCTACACCGATCCTACGT 58.327 55.000 0.00 0.00 31.06 3.57
299 300 1.601430 GGTCTACACCGATCCTACGTC 59.399 57.143 0.00 0.00 31.06 4.34
300 301 2.559440 GTCTACACCGATCCTACGTCT 58.441 52.381 0.00 0.00 0.00 4.18
301 302 3.493350 GGTCTACACCGATCCTACGTCTA 60.493 52.174 0.00 0.00 31.06 2.59
302 303 4.122776 GTCTACACCGATCCTACGTCTAA 58.877 47.826 0.00 0.00 0.00 2.10
303 304 4.210955 GTCTACACCGATCCTACGTCTAAG 59.789 50.000 0.00 0.00 0.00 2.18
304 305 2.295885 ACACCGATCCTACGTCTAAGG 58.704 52.381 0.00 0.00 35.26 2.69
305 306 2.092753 ACACCGATCCTACGTCTAAGGA 60.093 50.000 7.99 7.99 46.96 3.36
306 307 2.290093 CACCGATCCTACGTCTAAGGAC 59.710 54.545 7.71 2.40 45.78 3.85
307 308 2.172293 ACCGATCCTACGTCTAAGGACT 59.828 50.000 7.71 0.00 45.78 3.85
308 309 3.389329 ACCGATCCTACGTCTAAGGACTA 59.611 47.826 7.71 0.00 45.78 2.59
309 310 4.141620 ACCGATCCTACGTCTAAGGACTAA 60.142 45.833 7.71 0.00 45.78 2.24
310 311 5.002516 CCGATCCTACGTCTAAGGACTAAT 58.997 45.833 7.71 0.00 45.78 1.73
311 312 6.169094 CCGATCCTACGTCTAAGGACTAATA 58.831 44.000 7.71 0.00 45.78 0.98
312 313 6.822676 CCGATCCTACGTCTAAGGACTAATAT 59.177 42.308 7.71 0.00 45.78 1.28
313 314 7.984050 CCGATCCTACGTCTAAGGACTAATATA 59.016 40.741 7.71 0.00 45.78 0.86
314 315 9.033481 CGATCCTACGTCTAAGGACTAATATAG 57.967 40.741 7.71 0.00 45.78 1.31
315 316 8.735692 ATCCTACGTCTAAGGACTAATATAGC 57.264 38.462 7.71 0.00 45.78 2.97
316 317 7.108847 TCCTACGTCTAAGGACTAATATAGCC 58.891 42.308 1.23 0.00 38.24 3.93
317 318 6.883217 CCTACGTCTAAGGACTAATATAGCCA 59.117 42.308 0.00 0.00 40.10 4.75
318 319 7.556996 CCTACGTCTAAGGACTAATATAGCCAT 59.443 40.741 0.00 0.00 40.10 4.40
319 320 9.610705 CTACGTCTAAGGACTAATATAGCCATA 57.389 37.037 0.00 0.00 40.10 2.74
324 325 9.589461 TCTAAGGACTAATATAGCCATATAGCC 57.411 37.037 0.00 0.00 0.00 3.93
325 326 9.594936 CTAAGGACTAATATAGCCATATAGCCT 57.405 37.037 0.00 0.00 0.00 4.58
327 328 9.594936 AAGGACTAATATAGCCATATAGCCTAG 57.405 37.037 0.00 0.00 0.00 3.02
328 329 8.961134 AGGACTAATATAGCCATATAGCCTAGA 58.039 37.037 0.00 0.00 0.00 2.43
329 330 9.016438 GGACTAATATAGCCATATAGCCTAGAC 57.984 40.741 0.00 0.00 0.00 2.59
330 331 9.575868 GACTAATATAGCCATATAGCCTAGACA 57.424 37.037 0.00 0.00 0.00 3.41
334 335 9.439461 AATATAGCCATATAGCCTAGACATGAA 57.561 33.333 0.00 0.00 0.00 2.57
335 336 5.674052 AGCCATATAGCCTAGACATGAAG 57.326 43.478 0.00 0.00 0.00 3.02
336 337 4.469227 AGCCATATAGCCTAGACATGAAGG 59.531 45.833 0.00 4.37 35.86 3.46
337 338 4.383552 GCCATATAGCCTAGACATGAAGGG 60.384 50.000 0.00 0.00 33.17 3.95
338 339 4.163078 CCATATAGCCTAGACATGAAGGGG 59.837 50.000 0.00 0.00 33.17 4.79
339 340 3.637821 ATAGCCTAGACATGAAGGGGA 57.362 47.619 0.00 0.00 33.17 4.81
340 341 1.799933 AGCCTAGACATGAAGGGGAG 58.200 55.000 0.00 0.00 33.17 4.30
341 342 1.008938 AGCCTAGACATGAAGGGGAGT 59.991 52.381 0.00 0.00 33.17 3.85
342 343 1.139853 GCCTAGACATGAAGGGGAGTG 59.860 57.143 0.00 0.00 33.17 3.51
343 344 2.472029 CCTAGACATGAAGGGGAGTGT 58.528 52.381 0.00 0.00 0.00 3.55
344 345 2.840651 CCTAGACATGAAGGGGAGTGTT 59.159 50.000 0.00 0.00 0.00 3.32
345 346 2.867109 AGACATGAAGGGGAGTGTTG 57.133 50.000 0.00 0.00 0.00 3.33
346 347 2.338809 AGACATGAAGGGGAGTGTTGA 58.661 47.619 0.00 0.00 0.00 3.18
347 348 2.711009 AGACATGAAGGGGAGTGTTGAA 59.289 45.455 0.00 0.00 0.00 2.69
348 349 3.138283 AGACATGAAGGGGAGTGTTGAAA 59.862 43.478 0.00 0.00 0.00 2.69
349 350 4.082125 GACATGAAGGGGAGTGTTGAAAT 58.918 43.478 0.00 0.00 0.00 2.17
350 351 5.014123 AGACATGAAGGGGAGTGTTGAAATA 59.986 40.000 0.00 0.00 0.00 1.40
351 352 5.831103 ACATGAAGGGGAGTGTTGAAATAT 58.169 37.500 0.00 0.00 0.00 1.28
352 353 6.969043 ACATGAAGGGGAGTGTTGAAATATA 58.031 36.000 0.00 0.00 0.00 0.86
353 354 7.586349 ACATGAAGGGGAGTGTTGAAATATAT 58.414 34.615 0.00 0.00 0.00 0.86
354 355 8.061304 ACATGAAGGGGAGTGTTGAAATATATT 58.939 33.333 0.00 0.00 0.00 1.28
355 356 7.880160 TGAAGGGGAGTGTTGAAATATATTG 57.120 36.000 0.00 0.00 0.00 1.90
356 357 6.321181 TGAAGGGGAGTGTTGAAATATATTGC 59.679 38.462 0.00 0.00 0.00 3.56
357 358 5.140454 AGGGGAGTGTTGAAATATATTGCC 58.860 41.667 0.00 0.00 0.00 4.52
358 359 4.280929 GGGGAGTGTTGAAATATATTGCCC 59.719 45.833 0.00 0.00 0.00 5.36
359 360 4.892934 GGGAGTGTTGAAATATATTGCCCA 59.107 41.667 0.00 0.00 0.00 5.36
360 361 5.221244 GGGAGTGTTGAAATATATTGCCCAC 60.221 44.000 12.40 12.40 0.00 4.61
361 362 5.221244 GGAGTGTTGAAATATATTGCCCACC 60.221 44.000 15.06 9.54 0.00 4.61
362 363 5.518865 AGTGTTGAAATATATTGCCCACCT 58.481 37.500 15.06 4.86 0.00 4.00
363 364 5.594317 AGTGTTGAAATATATTGCCCACCTC 59.406 40.000 15.06 3.10 0.00 3.85
364 365 4.892934 TGTTGAAATATATTGCCCACCTCC 59.107 41.667 0.00 0.00 0.00 4.30
365 366 4.112634 TGAAATATATTGCCCACCTCCC 57.887 45.455 0.00 0.00 0.00 4.30
366 367 3.726859 TGAAATATATTGCCCACCTCCCT 59.273 43.478 0.00 0.00 0.00 4.20
367 368 4.202567 TGAAATATATTGCCCACCTCCCTC 60.203 45.833 0.00 0.00 0.00 4.30
368 369 1.742308 TATATTGCCCACCTCCCTCC 58.258 55.000 0.00 0.00 0.00 4.30
369 370 0.328450 ATATTGCCCACCTCCCTCCA 60.328 55.000 0.00 0.00 0.00 3.86
370 371 0.328450 TATTGCCCACCTCCCTCCAT 60.328 55.000 0.00 0.00 0.00 3.41
371 372 1.649271 ATTGCCCACCTCCCTCCATC 61.649 60.000 0.00 0.00 0.00 3.51
372 373 2.692368 GCCCACCTCCCTCCATCA 60.692 66.667 0.00 0.00 0.00 3.07
373 374 2.750657 GCCCACCTCCCTCCATCAG 61.751 68.421 0.00 0.00 0.00 2.90
374 375 1.307343 CCCACCTCCCTCCATCAGT 60.307 63.158 0.00 0.00 0.00 3.41
375 376 0.916358 CCCACCTCCCTCCATCAGTT 60.916 60.000 0.00 0.00 0.00 3.16
376 377 0.543749 CCACCTCCCTCCATCAGTTC 59.456 60.000 0.00 0.00 0.00 3.01
377 378 0.176680 CACCTCCCTCCATCAGTTCG 59.823 60.000 0.00 0.00 0.00 3.95
378 379 0.978146 ACCTCCCTCCATCAGTTCGG 60.978 60.000 0.00 0.00 0.00 4.30
379 380 0.687757 CCTCCCTCCATCAGTTCGGA 60.688 60.000 0.00 0.00 0.00 4.55
380 381 0.461961 CTCCCTCCATCAGTTCGGAC 59.538 60.000 0.00 0.00 0.00 4.79
381 382 0.041238 TCCCTCCATCAGTTCGGACT 59.959 55.000 0.00 0.00 36.25 3.85
382 383 0.905357 CCCTCCATCAGTTCGGACTT 59.095 55.000 0.00 0.00 32.54 3.01
383 384 1.279271 CCCTCCATCAGTTCGGACTTT 59.721 52.381 0.00 0.00 32.54 2.66
384 385 2.290323 CCCTCCATCAGTTCGGACTTTT 60.290 50.000 0.00 0.00 32.54 2.27
385 386 2.744202 CCTCCATCAGTTCGGACTTTTG 59.256 50.000 0.00 0.00 32.54 2.44
386 387 3.557054 CCTCCATCAGTTCGGACTTTTGA 60.557 47.826 0.00 0.00 32.54 2.69
387 388 4.065088 CTCCATCAGTTCGGACTTTTGAA 58.935 43.478 0.00 0.00 32.54 2.69
388 389 4.651778 TCCATCAGTTCGGACTTTTGAAT 58.348 39.130 0.00 0.00 32.54 2.57
389 390 4.455533 TCCATCAGTTCGGACTTTTGAATG 59.544 41.667 0.00 0.00 32.54 2.67
390 391 4.455533 CCATCAGTTCGGACTTTTGAATGA 59.544 41.667 0.00 0.00 32.54 2.57
391 392 5.391310 CCATCAGTTCGGACTTTTGAATGAG 60.391 44.000 0.00 0.00 32.54 2.90
392 393 4.703897 TCAGTTCGGACTTTTGAATGAGT 58.296 39.130 0.00 0.00 32.54 3.41
393 394 5.123227 TCAGTTCGGACTTTTGAATGAGTT 58.877 37.500 0.00 0.00 32.54 3.01
394 395 5.007626 TCAGTTCGGACTTTTGAATGAGTTG 59.992 40.000 0.00 0.00 32.54 3.16
395 396 5.007626 CAGTTCGGACTTTTGAATGAGTTGA 59.992 40.000 0.00 0.00 32.54 3.18
396 397 5.007724 AGTTCGGACTTTTGAATGAGTTGAC 59.992 40.000 0.00 0.00 29.87 3.18
397 398 4.703897 TCGGACTTTTGAATGAGTTGACT 58.296 39.130 0.00 0.00 0.00 3.41
398 399 4.511454 TCGGACTTTTGAATGAGTTGACTG 59.489 41.667 0.00 0.00 0.00 3.51
399 400 4.511454 CGGACTTTTGAATGAGTTGACTGA 59.489 41.667 0.00 0.00 0.00 3.41
400 401 5.007626 CGGACTTTTGAATGAGTTGACTGAA 59.992 40.000 0.00 0.00 0.00 3.02
401 402 6.293626 CGGACTTTTGAATGAGTTGACTGAAT 60.294 38.462 0.00 0.00 0.00 2.57
402 403 7.428826 GGACTTTTGAATGAGTTGACTGAATT 58.571 34.615 0.00 0.00 0.00 2.17
403 404 8.567948 GGACTTTTGAATGAGTTGACTGAATTA 58.432 33.333 0.00 0.00 0.00 1.40
405 406 9.903682 ACTTTTGAATGAGTTGACTGAATTATG 57.096 29.630 0.00 0.00 0.00 1.90
434 435 2.770164 AGGTCGTCCCAAAGATCTTG 57.230 50.000 9.17 3.45 34.66 3.02
495 498 1.616159 GGACCTGCAGCCAAAACTAA 58.384 50.000 8.66 0.00 0.00 2.24
507 510 5.174943 CAGCCAAAACTAAAAATTGACGGAC 59.825 40.000 0.00 0.00 0.00 4.79
616 621 1.210967 TGTAACCGGGGATGATGAACC 59.789 52.381 6.32 0.00 0.00 3.62
881 891 0.672711 GGAACGGACTGTAGTTGCCC 60.673 60.000 5.96 0.00 33.47 5.36
1072 1105 2.107141 CTTCCTCCATCGTCGCCC 59.893 66.667 0.00 0.00 0.00 6.13
1116 1149 1.671328 CTCAAGATCGACGGCTACTCA 59.329 52.381 0.00 0.00 0.00 3.41
1237 1270 9.900710 ACAAGACAGAAGATATCGATTACATAC 57.099 33.333 1.71 0.00 0.00 2.39
1240 1273 7.891183 AGACAGAAGATATCGATTACATACCCT 59.109 37.037 1.71 0.00 0.00 4.34
1342 1387 1.230324 GAATCCGGTGCTGCCTTATC 58.770 55.000 0.00 0.00 34.25 1.75
1353 1398 1.271840 TGCCTTATCGCTGGGGAACT 61.272 55.000 0.00 0.00 0.00 3.01
1490 1536 0.247736 ACTGTCATGAGCGAGTTCCC 59.752 55.000 0.00 0.00 0.00 3.97
1670 1717 0.037447 AGAGCAGAGTTCTTTGGGCC 59.963 55.000 0.00 0.00 0.00 5.80
1686 1733 3.089838 CCCATGAAGGAGGGCACA 58.910 61.111 0.00 0.00 41.22 4.57
1735 1782 0.250467 TGAGGCAGAGGTGTTCAAGC 60.250 55.000 0.00 0.00 0.00 4.01
1736 1783 0.957888 GAGGCAGAGGTGTTCAAGCC 60.958 60.000 0.00 0.00 44.82 4.35
1737 1784 1.073897 GGCAGAGGTGTTCAAGCCT 59.926 57.895 0.00 0.00 42.61 4.58
1738 1785 0.538287 GGCAGAGGTGTTCAAGCCTT 60.538 55.000 0.00 0.00 42.61 4.35
1802 1857 2.988010 TGGATCAACAGGAGGAATCG 57.012 50.000 0.00 0.00 0.00 3.34
1863 1957 2.293122 TGCAATCAACGGAGGAAAAGTG 59.707 45.455 0.00 0.00 0.00 3.16
1884 1978 0.539438 AGCAGATCGAGCTCTAGGGG 60.539 60.000 12.85 0.00 38.01 4.79
2246 5766 3.788766 GCGCGCACACGGAAAGAT 61.789 61.111 29.10 0.00 40.57 2.40
2445 5981 3.669251 TTTTCGGCCGGAAATCAAAAT 57.331 38.095 27.82 0.00 43.82 1.82
2446 5982 3.669251 TTTCGGCCGGAAATCAAAATT 57.331 38.095 27.83 0.00 39.67 1.82
2447 5983 4.785511 TTTCGGCCGGAAATCAAAATTA 57.214 36.364 27.83 0.00 39.67 1.40
2448 5984 4.364415 TTCGGCCGGAAATCAAAATTAG 57.636 40.909 27.83 0.00 0.00 1.73
2449 5985 3.349022 TCGGCCGGAAATCAAAATTAGT 58.651 40.909 27.83 0.00 0.00 2.24
2450 5986 3.759618 TCGGCCGGAAATCAAAATTAGTT 59.240 39.130 27.83 0.00 0.00 2.24
2451 5987 4.218852 TCGGCCGGAAATCAAAATTAGTTT 59.781 37.500 27.83 0.00 0.00 2.66
2456 5992 6.645003 GCCGGAAATCAAAATTAGTTTTCAGT 59.355 34.615 5.05 0.00 35.41 3.41
2498 6034 2.519013 GCCATGGAGTCTGAAGGTTTT 58.481 47.619 18.40 0.00 0.00 2.43
2518 6054 6.816640 GGTTTTCAGTTTTTAACCAAGAGCTT 59.183 34.615 0.00 0.00 39.80 3.74
2732 6803 6.148645 GTGGTTCTTTTTGTTTGGTCATTGTT 59.851 34.615 0.00 0.00 0.00 2.83
2733 6804 6.148480 TGGTTCTTTTTGTTTGGTCATTGTTG 59.852 34.615 0.00 0.00 0.00 3.33
2734 6805 6.148645 GGTTCTTTTTGTTTGGTCATTGTTGT 59.851 34.615 0.00 0.00 0.00 3.32
2794 6871 4.588899 TGTGCCAAGCAAGAACTGTATAT 58.411 39.130 0.00 0.00 41.47 0.86
2795 6872 5.009631 TGTGCCAAGCAAGAACTGTATATT 58.990 37.500 0.00 0.00 41.47 1.28
2796 6873 5.106197 TGTGCCAAGCAAGAACTGTATATTG 60.106 40.000 0.00 0.00 41.47 1.90
2797 6874 5.009631 TGCCAAGCAAGAACTGTATATTGT 58.990 37.500 0.00 0.00 34.76 2.71
2798 6875 5.106197 TGCCAAGCAAGAACTGTATATTGTG 60.106 40.000 0.00 0.00 34.76 3.33
2799 6876 5.123820 GCCAAGCAAGAACTGTATATTGTGA 59.876 40.000 0.00 0.00 0.00 3.58
2800 6877 6.349280 GCCAAGCAAGAACTGTATATTGTGAA 60.349 38.462 0.00 0.00 0.00 3.18
2801 6878 7.246311 CCAAGCAAGAACTGTATATTGTGAAG 58.754 38.462 0.00 0.00 0.00 3.02
2802 6879 7.094634 CCAAGCAAGAACTGTATATTGTGAAGT 60.095 37.037 0.00 0.00 0.00 3.01
2803 6880 7.602517 AGCAAGAACTGTATATTGTGAAGTC 57.397 36.000 0.00 0.00 0.00 3.01
2804 6881 7.161404 AGCAAGAACTGTATATTGTGAAGTCA 58.839 34.615 0.00 0.00 0.00 3.41
2805 6882 7.826252 AGCAAGAACTGTATATTGTGAAGTCAT 59.174 33.333 0.00 0.00 0.00 3.06
2806 6883 7.907045 GCAAGAACTGTATATTGTGAAGTCATG 59.093 37.037 0.00 0.00 0.00 3.07
2807 6884 8.939929 CAAGAACTGTATATTGTGAAGTCATGT 58.060 33.333 0.00 0.00 0.00 3.21
2808 6885 8.484641 AGAACTGTATATTGTGAAGTCATGTG 57.515 34.615 0.00 0.00 0.00 3.21
2809 6886 8.097038 AGAACTGTATATTGTGAAGTCATGTGT 58.903 33.333 0.00 0.00 0.00 3.72
2810 6887 7.601073 ACTGTATATTGTGAAGTCATGTGTG 57.399 36.000 0.00 0.00 0.00 3.82
2811 6888 7.386059 ACTGTATATTGTGAAGTCATGTGTGA 58.614 34.615 0.00 0.00 0.00 3.58
2812 6889 8.043113 ACTGTATATTGTGAAGTCATGTGTGAT 58.957 33.333 0.00 0.00 36.60 3.06
2813 6890 8.200364 TGTATATTGTGAAGTCATGTGTGATG 57.800 34.615 0.00 0.00 36.60 3.07
2814 6891 7.823799 TGTATATTGTGAAGTCATGTGTGATGT 59.176 33.333 0.00 0.00 36.60 3.06
2815 6892 4.816786 TTGTGAAGTCATGTGTGATGTG 57.183 40.909 0.00 0.00 36.60 3.21
2816 6893 2.549329 TGTGAAGTCATGTGTGATGTGC 59.451 45.455 0.00 0.00 36.60 4.57
2817 6894 2.549329 GTGAAGTCATGTGTGATGTGCA 59.451 45.455 0.00 0.00 36.60 4.57
2818 6895 3.003585 GTGAAGTCATGTGTGATGTGCAA 59.996 43.478 0.00 0.00 36.60 4.08
2819 6896 3.003585 TGAAGTCATGTGTGATGTGCAAC 59.996 43.478 0.00 0.00 36.60 4.17
2830 6907 3.663644 TGTGCAACATTGGCAAGTG 57.336 47.368 5.96 7.06 45.67 3.16
2831 6908 0.530211 TGTGCAACATTGGCAAGTGC 60.530 50.000 20.33 20.33 45.67 4.40
2832 6909 0.249573 GTGCAACATTGGCAAGTGCT 60.250 50.000 24.64 7.13 43.91 4.40
2833 6910 0.464870 TGCAACATTGGCAAGTGCTT 59.535 45.000 24.64 10.77 38.54 3.91
2834 6911 1.685517 TGCAACATTGGCAAGTGCTTA 59.314 42.857 24.64 10.43 38.54 3.09
2835 6912 2.288334 TGCAACATTGGCAAGTGCTTAG 60.288 45.455 24.64 7.01 38.54 2.18
2836 6913 2.288395 GCAACATTGGCAAGTGCTTAGT 60.288 45.455 20.03 3.35 41.70 2.24
2837 6914 3.057596 GCAACATTGGCAAGTGCTTAGTA 60.058 43.478 20.03 0.00 41.70 1.82
2838 6915 4.726416 CAACATTGGCAAGTGCTTAGTAG 58.274 43.478 5.96 0.00 41.70 2.57
2839 6916 4.286297 ACATTGGCAAGTGCTTAGTAGA 57.714 40.909 5.96 0.00 41.70 2.59
2840 6917 4.003648 ACATTGGCAAGTGCTTAGTAGAC 58.996 43.478 5.96 0.00 41.70 2.59
2841 6918 3.762407 TTGGCAAGTGCTTAGTAGACA 57.238 42.857 0.00 0.00 41.70 3.41
2842 6919 3.981071 TGGCAAGTGCTTAGTAGACAT 57.019 42.857 2.85 0.00 41.70 3.06
2843 6920 4.286297 TGGCAAGTGCTTAGTAGACATT 57.714 40.909 2.85 0.00 41.70 2.71
2844 6921 4.002982 TGGCAAGTGCTTAGTAGACATTG 58.997 43.478 2.85 0.00 41.70 2.82
2845 6922 4.253685 GGCAAGTGCTTAGTAGACATTGA 58.746 43.478 2.85 0.00 41.70 2.57
2846 6923 4.878397 GGCAAGTGCTTAGTAGACATTGAT 59.122 41.667 2.85 0.00 41.70 2.57
2847 6924 5.355350 GGCAAGTGCTTAGTAGACATTGATT 59.645 40.000 2.85 0.00 41.70 2.57
2848 6925 6.127897 GGCAAGTGCTTAGTAGACATTGATTT 60.128 38.462 2.85 0.00 41.70 2.17
2849 6926 6.744537 GCAAGTGCTTAGTAGACATTGATTTG 59.255 38.462 0.00 0.00 38.21 2.32
2850 6927 6.992063 AGTGCTTAGTAGACATTGATTTGG 57.008 37.500 0.00 0.00 0.00 3.28
2851 6928 6.711277 AGTGCTTAGTAGACATTGATTTGGA 58.289 36.000 0.00 0.00 0.00 3.53
2852 6929 7.341805 AGTGCTTAGTAGACATTGATTTGGAT 58.658 34.615 0.00 0.00 0.00 3.41
2853 6930 8.486210 AGTGCTTAGTAGACATTGATTTGGATA 58.514 33.333 0.00 0.00 0.00 2.59
2854 6931 8.552034 GTGCTTAGTAGACATTGATTTGGATAC 58.448 37.037 0.00 0.00 0.00 2.24
2855 6932 8.486210 TGCTTAGTAGACATTGATTTGGATACT 58.514 33.333 0.00 0.00 37.61 2.12
2856 6933 8.983724 GCTTAGTAGACATTGATTTGGATACTC 58.016 37.037 0.00 0.00 37.61 2.59
2859 6936 7.504403 AGTAGACATTGATTTGGATACTCTGG 58.496 38.462 0.00 0.00 37.61 3.86
2860 6937 6.566079 AGACATTGATTTGGATACTCTGGA 57.434 37.500 0.00 0.00 37.61 3.86
2861 6938 7.146715 AGACATTGATTTGGATACTCTGGAT 57.853 36.000 0.00 0.00 37.61 3.41
2862 6939 6.996879 AGACATTGATTTGGATACTCTGGATG 59.003 38.462 0.00 0.00 37.61 3.51
2863 6940 6.903516 ACATTGATTTGGATACTCTGGATGA 58.096 36.000 0.00 0.00 37.61 2.92
2864 6941 7.524290 ACATTGATTTGGATACTCTGGATGAT 58.476 34.615 0.00 0.00 37.61 2.45
2865 6942 8.663167 ACATTGATTTGGATACTCTGGATGATA 58.337 33.333 0.00 0.00 37.61 2.15
2866 6943 9.682465 CATTGATTTGGATACTCTGGATGATAT 57.318 33.333 0.00 0.00 37.61 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.362476 CAGGTTTTGGGCGCTGGC 62.362 66.667 7.64 0.00 38.90 4.85
6 7 4.362476 GCAGGTTTTGGGCGCTGG 62.362 66.667 7.64 0.00 0.00 4.85
7 8 3.297620 AGCAGGTTTTGGGCGCTG 61.298 61.111 7.64 0.00 0.00 5.18
8 9 3.297620 CAGCAGGTTTTGGGCGCT 61.298 61.111 7.64 0.00 0.00 5.92
10 11 4.362476 GGCAGCAGGTTTTGGGCG 62.362 66.667 0.00 0.00 0.00 6.13
11 12 3.230522 CTGGCAGCAGGTTTTGGGC 62.231 63.158 0.00 0.00 0.00 5.36
12 13 1.530013 CTCTGGCAGCAGGTTTTGGG 61.530 60.000 10.34 0.00 0.00 4.12
13 14 0.538057 TCTCTGGCAGCAGGTTTTGG 60.538 55.000 10.34 0.00 0.00 3.28
14 15 0.879765 CTCTCTGGCAGCAGGTTTTG 59.120 55.000 10.34 0.00 0.00 2.44
15 16 0.475906 ACTCTCTGGCAGCAGGTTTT 59.524 50.000 10.34 0.00 0.00 2.43
16 17 0.250640 CACTCTCTGGCAGCAGGTTT 60.251 55.000 10.34 0.00 0.00 3.27
17 18 1.374190 CACTCTCTGGCAGCAGGTT 59.626 57.895 10.34 0.00 0.00 3.50
18 19 2.591072 CCACTCTCTGGCAGCAGGT 61.591 63.158 10.34 4.97 31.36 4.00
19 20 2.268280 CCACTCTCTGGCAGCAGG 59.732 66.667 10.34 4.31 31.36 4.85
26 27 4.135153 CGTCCCGCCACTCTCTGG 62.135 72.222 0.00 0.00 44.08 3.86
27 28 4.135153 CCGTCCCGCCACTCTCTG 62.135 72.222 0.00 0.00 0.00 3.35
47 48 3.934391 CTTCGTCTGGTGGGCGGTC 62.934 68.421 0.00 0.00 0.00 4.79
48 49 4.003788 CTTCGTCTGGTGGGCGGT 62.004 66.667 0.00 0.00 0.00 5.68
50 51 4.680237 TGCTTCGTCTGGTGGGCG 62.680 66.667 0.00 0.00 0.00 6.13
51 52 3.050275 GTGCTTCGTCTGGTGGGC 61.050 66.667 0.00 0.00 0.00 5.36
52 53 1.961277 GTGTGCTTCGTCTGGTGGG 60.961 63.158 0.00 0.00 0.00 4.61
53 54 1.961277 GGTGTGCTTCGTCTGGTGG 60.961 63.158 0.00 0.00 0.00 4.61
54 55 1.227527 TGGTGTGCTTCGTCTGGTG 60.228 57.895 0.00 0.00 0.00 4.17
55 56 1.227556 GTGGTGTGCTTCGTCTGGT 60.228 57.895 0.00 0.00 0.00 4.00
56 57 1.961277 GGTGGTGTGCTTCGTCTGG 60.961 63.158 0.00 0.00 0.00 3.86
57 58 2.310233 CGGTGGTGTGCTTCGTCTG 61.310 63.158 0.00 0.00 0.00 3.51
58 59 2.029073 CGGTGGTGTGCTTCGTCT 59.971 61.111 0.00 0.00 0.00 4.18
59 60 3.712881 GCGGTGGTGTGCTTCGTC 61.713 66.667 0.00 0.00 0.00 4.20
115 116 3.798954 GATCTCCTTGGCGGCGGAG 62.799 68.421 22.00 22.00 46.52 4.63
116 117 3.849951 GATCTCCTTGGCGGCGGA 61.850 66.667 9.78 4.82 0.00 5.54
117 118 4.918201 GGATCTCCTTGGCGGCGG 62.918 72.222 9.78 0.00 0.00 6.13
118 119 4.918201 GGGATCTCCTTGGCGGCG 62.918 72.222 0.51 0.51 35.95 6.46
119 120 4.570874 GGGGATCTCCTTGGCGGC 62.571 72.222 3.62 0.00 35.95 6.53
120 121 2.770048 AGGGGATCTCCTTGGCGG 60.770 66.667 8.90 0.00 32.13 6.13
121 122 2.825264 GAGGGGATCTCCTTGGCG 59.175 66.667 17.46 0.00 37.25 5.69
122 123 2.825264 CGAGGGGATCTCCTTGGC 59.175 66.667 20.32 4.85 39.30 4.52
123 124 2.812619 GGCGAGGGGATCTCCTTGG 61.813 68.421 27.52 18.11 39.30 3.61
124 125 2.825264 GGCGAGGGGATCTCCTTG 59.175 66.667 23.31 23.31 39.30 3.61
125 126 2.840102 CGGCGAGGGGATCTCCTT 60.840 66.667 17.46 0.00 39.30 3.36
126 127 3.680920 AACGGCGAGGGGATCTCCT 62.681 63.158 16.15 16.15 39.30 3.69
127 128 3.155167 AACGGCGAGGGGATCTCC 61.155 66.667 16.62 2.22 39.30 3.71
128 129 2.107141 CAACGGCGAGGGGATCTC 59.893 66.667 16.62 0.00 39.10 2.75
129 130 0.974010 TAACAACGGCGAGGGGATCT 60.974 55.000 16.62 0.00 0.00 2.75
130 131 0.808847 GTAACAACGGCGAGGGGATC 60.809 60.000 16.62 0.00 0.00 3.36
131 132 1.219935 GTAACAACGGCGAGGGGAT 59.780 57.895 16.62 0.00 0.00 3.85
132 133 2.658422 GTAACAACGGCGAGGGGA 59.342 61.111 16.62 0.00 0.00 4.81
133 134 2.435410 GGTAACAACGGCGAGGGG 60.435 66.667 16.62 1.71 0.00 4.79
152 153 3.675619 ATTCGGAAGGCGAACCCGG 62.676 63.158 0.00 0.00 43.16 5.73
153 154 2.125269 ATTCGGAAGGCGAACCCG 60.125 61.111 0.00 0.00 44.22 5.28
154 155 2.171725 CGATTCGGAAGGCGAACCC 61.172 63.158 9.36 0.00 36.11 4.11
155 156 2.810012 GCGATTCGGAAGGCGAACC 61.810 63.158 16.65 0.00 0.00 3.62
156 157 2.701606 GCGATTCGGAAGGCGAAC 59.298 61.111 16.65 0.60 0.00 3.95
157 158 2.510691 GGCGATTCGGAAGGCGAA 60.511 61.111 16.65 0.00 0.00 4.70
158 159 3.458163 AGGCGATTCGGAAGGCGA 61.458 61.111 16.65 0.00 35.47 5.54
159 160 3.264897 CAGGCGATTCGGAAGGCG 61.265 66.667 8.34 10.32 35.47 5.52
160 161 2.897350 CCAGGCGATTCGGAAGGC 60.897 66.667 8.34 7.75 0.00 4.35
161 162 2.897350 GCCAGGCGATTCGGAAGG 60.897 66.667 8.34 0.00 0.00 3.46
162 163 2.897350 GGCCAGGCGATTCGGAAG 60.897 66.667 5.00 0.00 0.00 3.46
163 164 4.830765 CGGCCAGGCGATTCGGAA 62.831 66.667 8.02 0.00 0.00 4.30
165 166 4.215742 TACGGCCAGGCGATTCGG 62.216 66.667 21.08 0.80 0.00 4.30
166 167 2.960129 GTACGGCCAGGCGATTCG 60.960 66.667 21.08 13.17 0.00 3.34
167 168 2.960129 CGTACGGCCAGGCGATTC 60.960 66.667 21.08 8.64 0.00 2.52
168 169 3.426117 CTCGTACGGCCAGGCGATT 62.426 63.158 21.08 0.99 32.78 3.34
169 170 3.900892 CTCGTACGGCCAGGCGAT 61.901 66.667 21.08 6.17 32.78 4.58
171 172 4.554363 CTCTCGTACGGCCAGGCG 62.554 72.222 16.52 12.45 0.00 5.52
172 173 4.874977 GCTCTCGTACGGCCAGGC 62.875 72.222 16.52 1.26 0.00 4.85
173 174 4.208686 GGCTCTCGTACGGCCAGG 62.209 72.222 23.70 9.01 44.69 4.45
174 175 4.554363 CGGCTCTCGTACGGCCAG 62.554 72.222 26.49 17.85 45.50 4.85
191 192 1.153349 GGATGGAGAGCGTCCCAAC 60.153 63.158 5.76 0.24 46.31 3.77
192 193 1.612146 TGGATGGAGAGCGTCCCAA 60.612 57.895 5.76 0.00 46.31 4.12
193 194 2.038813 TGGATGGAGAGCGTCCCA 59.961 61.111 5.76 1.38 46.31 4.37
194 195 1.617947 AAGTGGATGGAGAGCGTCCC 61.618 60.000 5.76 0.00 46.31 4.46
196 197 1.734465 CAAAAGTGGATGGAGAGCGTC 59.266 52.381 0.00 0.00 0.00 5.19
197 198 1.072331 ACAAAAGTGGATGGAGAGCGT 59.928 47.619 0.00 0.00 0.00 5.07
198 199 1.466167 CACAAAAGTGGATGGAGAGCG 59.534 52.381 0.00 0.00 0.00 5.03
199 200 2.485814 GACACAAAAGTGGATGGAGAGC 59.514 50.000 0.38 0.00 0.00 4.09
200 201 3.077359 GGACACAAAAGTGGATGGAGAG 58.923 50.000 0.38 0.00 0.00 3.20
201 202 2.711009 AGGACACAAAAGTGGATGGAGA 59.289 45.455 0.38 0.00 0.00 3.71
202 203 3.077359 GAGGACACAAAAGTGGATGGAG 58.923 50.000 0.38 0.00 0.00 3.86
203 204 2.441375 TGAGGACACAAAAGTGGATGGA 59.559 45.455 0.38 0.00 0.00 3.41
204 205 2.862541 TGAGGACACAAAAGTGGATGG 58.137 47.619 0.38 0.00 0.00 3.51
205 206 4.136796 TCTTGAGGACACAAAAGTGGATG 58.863 43.478 0.38 0.00 0.00 3.51
206 207 4.392940 CTCTTGAGGACACAAAAGTGGAT 58.607 43.478 0.38 0.00 0.00 3.41
207 208 3.433598 CCTCTTGAGGACACAAAAGTGGA 60.434 47.826 11.02 0.00 36.04 4.02
208 209 2.880890 CCTCTTGAGGACACAAAAGTGG 59.119 50.000 11.02 0.00 0.00 4.00
209 210 3.545703 ACCTCTTGAGGACACAAAAGTG 58.454 45.455 22.10 0.00 0.00 3.16
210 211 3.456277 AGACCTCTTGAGGACACAAAAGT 59.544 43.478 22.10 0.00 0.00 2.66
211 212 4.078639 AGACCTCTTGAGGACACAAAAG 57.921 45.455 22.10 0.00 0.00 2.27
212 213 4.503714 AAGACCTCTTGAGGACACAAAA 57.496 40.909 22.10 0.00 34.38 2.44
232 233 0.843309 TGGCAGGGTCTTGAACTCAA 59.157 50.000 0.00 0.00 0.00 3.02
233 234 0.843309 TTGGCAGGGTCTTGAACTCA 59.157 50.000 0.00 0.00 0.00 3.41
234 235 1.239347 GTTGGCAGGGTCTTGAACTC 58.761 55.000 0.00 0.00 0.00 3.01
235 236 0.535102 CGTTGGCAGGGTCTTGAACT 60.535 55.000 0.00 0.00 0.00 3.01
236 237 1.949257 CGTTGGCAGGGTCTTGAAC 59.051 57.895 0.00 0.00 0.00 3.18
237 238 1.896660 GCGTTGGCAGGGTCTTGAA 60.897 57.895 0.00 0.00 39.62 2.69
238 239 2.281484 GCGTTGGCAGGGTCTTGA 60.281 61.111 0.00 0.00 39.62 3.02
239 240 2.594303 TGCGTTGGCAGGGTCTTG 60.594 61.111 0.00 0.00 46.21 3.02
248 249 6.022821 TCGTTTTATTTAATACTGCGTTGGC 58.977 36.000 0.00 0.00 40.52 4.52
249 250 8.609478 AATCGTTTTATTTAATACTGCGTTGG 57.391 30.769 0.00 0.00 0.00 3.77
250 251 9.485591 AGAATCGTTTTATTTAATACTGCGTTG 57.514 29.630 0.00 0.00 0.00 4.10
251 252 9.485591 CAGAATCGTTTTATTTAATACTGCGTT 57.514 29.630 0.00 0.00 0.00 4.84
252 253 7.638683 GCAGAATCGTTTTATTTAATACTGCGT 59.361 33.333 0.00 0.00 36.91 5.24
253 254 7.971697 GCAGAATCGTTTTATTTAATACTGCG 58.028 34.615 0.00 1.48 36.91 5.18
254 255 7.111593 CCGCAGAATCGTTTTATTTAATACTGC 59.888 37.037 0.00 0.00 41.18 4.40
255 256 8.120465 ACCGCAGAATCGTTTTATTTAATACTG 58.880 33.333 0.00 0.00 0.00 2.74
256 257 8.205131 ACCGCAGAATCGTTTTATTTAATACT 57.795 30.769 0.00 0.00 0.00 2.12
257 258 8.333186 AGACCGCAGAATCGTTTTATTTAATAC 58.667 33.333 0.00 0.00 0.00 1.89
258 259 8.428186 AGACCGCAGAATCGTTTTATTTAATA 57.572 30.769 0.00 0.00 0.00 0.98
259 260 7.316544 AGACCGCAGAATCGTTTTATTTAAT 57.683 32.000 0.00 0.00 0.00 1.40
260 261 6.730960 AGACCGCAGAATCGTTTTATTTAA 57.269 33.333 0.00 0.00 0.00 1.52
261 262 6.812656 TGTAGACCGCAGAATCGTTTTATTTA 59.187 34.615 0.00 0.00 0.00 1.40
262 263 5.640357 TGTAGACCGCAGAATCGTTTTATTT 59.360 36.000 0.00 0.00 0.00 1.40
263 264 5.063060 GTGTAGACCGCAGAATCGTTTTATT 59.937 40.000 0.00 0.00 0.00 1.40
264 265 4.565564 GTGTAGACCGCAGAATCGTTTTAT 59.434 41.667 0.00 0.00 0.00 1.40
265 266 3.922240 GTGTAGACCGCAGAATCGTTTTA 59.078 43.478 0.00 0.00 0.00 1.52
266 267 2.735134 GTGTAGACCGCAGAATCGTTTT 59.265 45.455 0.00 0.00 0.00 2.43
267 268 2.334838 GTGTAGACCGCAGAATCGTTT 58.665 47.619 0.00 0.00 0.00 3.60
268 269 1.403780 GGTGTAGACCGCAGAATCGTT 60.404 52.381 0.00 0.00 30.61 3.85
269 270 0.172803 GGTGTAGACCGCAGAATCGT 59.827 55.000 0.00 0.00 30.61 3.73
270 271 2.959275 GGTGTAGACCGCAGAATCG 58.041 57.895 0.00 0.00 30.61 3.34
279 280 1.601430 GACGTAGGATCGGTGTAGACC 59.399 57.143 0.00 0.00 39.14 3.85
280 281 2.559440 AGACGTAGGATCGGTGTAGAC 58.441 52.381 0.00 0.00 34.94 2.59
281 282 2.996249 AGACGTAGGATCGGTGTAGA 57.004 50.000 0.00 0.00 34.94 2.59
282 283 3.497640 CCTTAGACGTAGGATCGGTGTAG 59.502 52.174 0.00 0.00 34.56 2.74
283 284 3.134623 TCCTTAGACGTAGGATCGGTGTA 59.865 47.826 1.23 0.00 36.88 2.90
284 285 2.092753 TCCTTAGACGTAGGATCGGTGT 60.093 50.000 1.23 0.00 36.88 4.16
285 286 2.290093 GTCCTTAGACGTAGGATCGGTG 59.710 54.545 8.75 0.00 43.39 4.94
286 287 2.570135 GTCCTTAGACGTAGGATCGGT 58.430 52.381 8.75 0.00 43.39 4.69
298 299 9.589461 GGCTATATGGCTATATTAGTCCTTAGA 57.411 37.037 11.16 0.00 38.32 2.10
314 315 4.383552 CCCTTCATGTCTAGGCTATATGGC 60.384 50.000 1.74 1.74 42.15 4.40
315 316 4.163078 CCCCTTCATGTCTAGGCTATATGG 59.837 50.000 0.00 0.00 0.00 2.74
316 317 5.026121 TCCCCTTCATGTCTAGGCTATATG 58.974 45.833 0.00 1.21 0.00 1.78
317 318 5.222652 ACTCCCCTTCATGTCTAGGCTATAT 60.223 44.000 0.00 0.00 0.00 0.86
318 319 4.108124 ACTCCCCTTCATGTCTAGGCTATA 59.892 45.833 0.00 0.00 0.00 1.31
319 320 3.116551 ACTCCCCTTCATGTCTAGGCTAT 60.117 47.826 0.00 0.00 0.00 2.97
320 321 2.247635 ACTCCCCTTCATGTCTAGGCTA 59.752 50.000 0.00 0.00 0.00 3.93
321 322 1.008938 ACTCCCCTTCATGTCTAGGCT 59.991 52.381 0.00 0.00 0.00 4.58
322 323 1.139853 CACTCCCCTTCATGTCTAGGC 59.860 57.143 0.00 0.00 0.00 3.93
323 324 2.472029 ACACTCCCCTTCATGTCTAGG 58.528 52.381 0.00 0.00 0.00 3.02
324 325 3.515502 TCAACACTCCCCTTCATGTCTAG 59.484 47.826 0.00 0.00 0.00 2.43
325 326 3.516586 TCAACACTCCCCTTCATGTCTA 58.483 45.455 0.00 0.00 0.00 2.59
326 327 2.338809 TCAACACTCCCCTTCATGTCT 58.661 47.619 0.00 0.00 0.00 3.41
327 328 2.859165 TCAACACTCCCCTTCATGTC 57.141 50.000 0.00 0.00 0.00 3.06
328 329 3.593442 TTTCAACACTCCCCTTCATGT 57.407 42.857 0.00 0.00 0.00 3.21
329 330 8.355169 CAATATATTTCAACACTCCCCTTCATG 58.645 37.037 0.00 0.00 0.00 3.07
330 331 7.014615 GCAATATATTTCAACACTCCCCTTCAT 59.985 37.037 0.00 0.00 0.00 2.57
331 332 6.321181 GCAATATATTTCAACACTCCCCTTCA 59.679 38.462 0.00 0.00 0.00 3.02
332 333 6.239036 GGCAATATATTTCAACACTCCCCTTC 60.239 42.308 0.00 0.00 0.00 3.46
333 334 5.598417 GGCAATATATTTCAACACTCCCCTT 59.402 40.000 0.00 0.00 0.00 3.95
334 335 5.140454 GGCAATATATTTCAACACTCCCCT 58.860 41.667 0.00 0.00 0.00 4.79
335 336 4.280929 GGGCAATATATTTCAACACTCCCC 59.719 45.833 0.00 0.00 0.00 4.81
336 337 4.892934 TGGGCAATATATTTCAACACTCCC 59.107 41.667 0.00 0.00 0.00 4.30
337 338 5.221244 GGTGGGCAATATATTTCAACACTCC 60.221 44.000 15.90 6.95 0.00 3.85
338 339 5.594317 AGGTGGGCAATATATTTCAACACTC 59.406 40.000 15.90 9.89 0.00 3.51
339 340 5.518865 AGGTGGGCAATATATTTCAACACT 58.481 37.500 15.90 2.96 0.00 3.55
340 341 5.221244 GGAGGTGGGCAATATATTTCAACAC 60.221 44.000 11.15 11.15 0.00 3.32
341 342 4.892934 GGAGGTGGGCAATATATTTCAACA 59.107 41.667 0.00 0.00 0.00 3.33
342 343 4.280929 GGGAGGTGGGCAATATATTTCAAC 59.719 45.833 0.00 0.00 0.00 3.18
343 344 4.169856 AGGGAGGTGGGCAATATATTTCAA 59.830 41.667 0.00 0.00 0.00 2.69
344 345 3.726859 AGGGAGGTGGGCAATATATTTCA 59.273 43.478 0.00 0.00 0.00 2.69
345 346 4.336280 GAGGGAGGTGGGCAATATATTTC 58.664 47.826 0.00 0.00 0.00 2.17
346 347 3.076032 GGAGGGAGGTGGGCAATATATTT 59.924 47.826 0.00 0.00 0.00 1.40
347 348 2.649816 GGAGGGAGGTGGGCAATATATT 59.350 50.000 0.00 0.00 0.00 1.28
348 349 2.279173 GGAGGGAGGTGGGCAATATAT 58.721 52.381 0.00 0.00 0.00 0.86
349 350 1.060954 TGGAGGGAGGTGGGCAATATA 60.061 52.381 0.00 0.00 0.00 0.86
350 351 0.328450 TGGAGGGAGGTGGGCAATAT 60.328 55.000 0.00 0.00 0.00 1.28
351 352 0.328450 ATGGAGGGAGGTGGGCAATA 60.328 55.000 0.00 0.00 0.00 1.90
352 353 1.623686 ATGGAGGGAGGTGGGCAAT 60.624 57.895 0.00 0.00 0.00 3.56
353 354 2.204291 ATGGAGGGAGGTGGGCAA 60.204 61.111 0.00 0.00 0.00 4.52
354 355 2.692368 GATGGAGGGAGGTGGGCA 60.692 66.667 0.00 0.00 0.00 5.36
355 356 2.692368 TGATGGAGGGAGGTGGGC 60.692 66.667 0.00 0.00 0.00 5.36
356 357 0.916358 AACTGATGGAGGGAGGTGGG 60.916 60.000 0.00 0.00 0.00 4.61
357 358 0.543749 GAACTGATGGAGGGAGGTGG 59.456 60.000 0.00 0.00 0.00 4.61
358 359 0.176680 CGAACTGATGGAGGGAGGTG 59.823 60.000 0.00 0.00 0.00 4.00
359 360 0.978146 CCGAACTGATGGAGGGAGGT 60.978 60.000 0.00 0.00 0.00 3.85
360 361 0.687757 TCCGAACTGATGGAGGGAGG 60.688 60.000 0.00 0.00 0.00 4.30
361 362 0.461961 GTCCGAACTGATGGAGGGAG 59.538 60.000 0.00 0.00 34.21 4.30
362 363 0.041238 AGTCCGAACTGATGGAGGGA 59.959 55.000 0.00 0.00 34.21 4.20
363 364 0.905357 AAGTCCGAACTGATGGAGGG 59.095 55.000 0.00 0.00 35.36 4.30
364 365 2.744202 CAAAAGTCCGAACTGATGGAGG 59.256 50.000 0.00 0.00 35.36 4.30
365 366 3.664107 TCAAAAGTCCGAACTGATGGAG 58.336 45.455 0.00 0.00 35.36 3.86
366 367 3.762407 TCAAAAGTCCGAACTGATGGA 57.238 42.857 0.00 0.00 35.36 3.41
367 368 4.455533 TCATTCAAAAGTCCGAACTGATGG 59.544 41.667 0.00 0.00 35.36 3.51
368 369 5.180117 ACTCATTCAAAAGTCCGAACTGATG 59.820 40.000 0.00 0.00 35.36 3.07
369 370 5.308825 ACTCATTCAAAAGTCCGAACTGAT 58.691 37.500 0.00 0.00 35.36 2.90
370 371 4.703897 ACTCATTCAAAAGTCCGAACTGA 58.296 39.130 0.00 0.00 35.36 3.41
371 372 5.007626 TCAACTCATTCAAAAGTCCGAACTG 59.992 40.000 0.00 0.00 35.36 3.16
372 373 5.007724 GTCAACTCATTCAAAAGTCCGAACT 59.992 40.000 0.00 0.00 37.32 3.01
373 374 5.007724 AGTCAACTCATTCAAAAGTCCGAAC 59.992 40.000 0.00 0.00 0.00 3.95
374 375 5.007626 CAGTCAACTCATTCAAAAGTCCGAA 59.992 40.000 0.00 0.00 0.00 4.30
375 376 4.511454 CAGTCAACTCATTCAAAAGTCCGA 59.489 41.667 0.00 0.00 0.00 4.55
376 377 4.511454 TCAGTCAACTCATTCAAAAGTCCG 59.489 41.667 0.00 0.00 0.00 4.79
377 378 6.377327 TTCAGTCAACTCATTCAAAAGTCC 57.623 37.500 0.00 0.00 0.00 3.85
379 380 9.903682 CATAATTCAGTCAACTCATTCAAAAGT 57.096 29.630 0.00 0.00 0.00 2.66
398 399 8.290325 GGGACGACCTTATTGAATTCATAATTC 58.710 37.037 9.40 5.60 41.00 2.17
399 400 7.777910 TGGGACGACCTTATTGAATTCATAATT 59.222 33.333 9.40 0.00 41.11 1.40
400 401 7.287061 TGGGACGACCTTATTGAATTCATAAT 58.713 34.615 9.40 3.35 41.11 1.28
401 402 6.654959 TGGGACGACCTTATTGAATTCATAA 58.345 36.000 9.40 9.05 41.11 1.90
402 403 6.241882 TGGGACGACCTTATTGAATTCATA 57.758 37.500 9.40 0.91 41.11 2.15
403 404 5.110814 TGGGACGACCTTATTGAATTCAT 57.889 39.130 9.40 2.50 41.11 2.57
404 405 4.561500 TGGGACGACCTTATTGAATTCA 57.438 40.909 3.38 3.38 41.11 2.57
405 406 5.646360 TCTTTGGGACGACCTTATTGAATTC 59.354 40.000 3.44 0.00 41.11 2.17
406 407 5.566469 TCTTTGGGACGACCTTATTGAATT 58.434 37.500 3.44 0.00 41.11 2.17
407 408 5.174037 TCTTTGGGACGACCTTATTGAAT 57.826 39.130 3.44 0.00 41.11 2.57
408 409 4.627284 TCTTTGGGACGACCTTATTGAA 57.373 40.909 3.44 0.00 41.11 2.69
409 410 4.469945 AGATCTTTGGGACGACCTTATTGA 59.530 41.667 3.44 0.00 41.11 2.57
410 411 4.770795 AGATCTTTGGGACGACCTTATTG 58.229 43.478 3.44 0.00 41.11 1.90
411 412 5.045869 TCAAGATCTTTGGGACGACCTTATT 60.046 40.000 4.86 0.00 41.11 1.40
412 413 4.469945 TCAAGATCTTTGGGACGACCTTAT 59.530 41.667 4.86 0.00 41.11 1.73
413 414 3.835978 TCAAGATCTTTGGGACGACCTTA 59.164 43.478 4.86 0.00 41.11 2.69
418 419 2.370519 TGGTTCAAGATCTTTGGGACGA 59.629 45.455 4.86 0.00 0.00 4.20
434 435 0.242017 GACCACTTGCAGCATGGTTC 59.758 55.000 19.69 10.67 46.86 3.62
472 473 3.842925 TTTGGCTGCAGGTCCGACC 62.843 63.158 17.12 9.81 38.99 4.79
495 498 2.841215 TCTTCACCGTCCGTCAATTTT 58.159 42.857 0.00 0.00 0.00 1.82
507 510 2.376808 ACTTCTGAGCATCTTCACCG 57.623 50.000 0.00 0.00 34.92 4.94
572 575 1.226030 AACCGGCGCAGTTTCACTAC 61.226 55.000 10.83 0.00 0.00 2.73
873 883 1.338389 GCTACACGGAAAGGGCAACTA 60.338 52.381 0.00 0.00 0.00 2.24
881 891 0.179134 CTCGAGGGCTACACGGAAAG 60.179 60.000 3.91 0.00 0.00 2.62
1237 1270 2.526304 TCGAGTGTGACAAAGAAGGG 57.474 50.000 0.00 0.00 0.00 3.95
1240 1273 5.168569 GGTATCATCGAGTGTGACAAAGAA 58.831 41.667 0.00 0.00 0.00 2.52
1342 1387 2.267961 GGTACCAGTTCCCCAGCG 59.732 66.667 7.15 0.00 0.00 5.18
1353 1398 2.036733 CACCGAGAAGTTTCTGGTACCA 59.963 50.000 15.39 15.39 36.93 3.25
1457 1503 1.000843 TGACAGTGACATCGACCTTGG 59.999 52.381 0.00 0.00 0.00 3.61
1490 1536 2.047274 ATGGTGTCTTCCGTGCGG 60.047 61.111 3.94 3.94 0.00 5.69
1670 1717 0.967380 GGTTGTGCCCTCCTTCATGG 60.967 60.000 0.00 0.00 37.10 3.66
1686 1733 5.155161 TCTATACATATGGCCTCAGTGGTT 58.845 41.667 3.32 0.00 38.35 3.67
1735 1782 0.608582 AGCAAGCAGAGCCTTGAAGG 60.609 55.000 6.92 6.92 43.79 3.46
1736 1783 1.245732 AAGCAAGCAGAGCCTTGAAG 58.754 50.000 6.12 0.00 43.79 3.02
1737 1784 1.610522 GAAAGCAAGCAGAGCCTTGAA 59.389 47.619 6.12 0.00 43.79 2.69
1738 1785 1.242076 GAAAGCAAGCAGAGCCTTGA 58.758 50.000 6.12 0.00 43.79 3.02
1811 1866 0.173255 AAATTTCGGCCGAATGCTGG 59.827 50.000 38.89 1.93 46.96 4.85
1863 1957 1.810151 CCCTAGAGCTCGATCTGCTAC 59.190 57.143 8.37 5.07 41.30 3.58
1962 2060 9.253832 TGAGGATTGTTTTTATATGTTGGACAT 57.746 29.630 0.00 0.00 42.35 3.06
1963 2061 8.519526 GTGAGGATTGTTTTTATATGTTGGACA 58.480 33.333 0.00 0.00 0.00 4.02
2246 5766 5.082425 ACCCTAAACTTCTCGTTTCCTCTA 58.918 41.667 0.00 0.00 44.39 2.43
2390 5910 1.743772 CGAATTTCGGCCATCTCACCT 60.744 52.381 10.95 0.00 36.00 4.00
2435 5971 8.214472 GGCGAACTGAAAACTAATTTTGATTTC 58.786 33.333 6.63 6.63 38.17 2.17
2445 5981 3.799366 TCACTGGCGAACTGAAAACTAA 58.201 40.909 0.00 0.00 0.00 2.24
2446 5982 3.462483 TCACTGGCGAACTGAAAACTA 57.538 42.857 0.00 0.00 0.00 2.24
2447 5983 2.325583 TCACTGGCGAACTGAAAACT 57.674 45.000 0.00 0.00 0.00 2.66
2448 5984 3.251004 AGATTCACTGGCGAACTGAAAAC 59.749 43.478 0.00 0.00 0.00 2.43
2449 5985 3.250762 CAGATTCACTGGCGAACTGAAAA 59.749 43.478 0.00 0.00 42.39 2.29
2450 5986 2.807967 CAGATTCACTGGCGAACTGAAA 59.192 45.455 0.00 0.00 42.39 2.69
2451 5987 2.416747 CAGATTCACTGGCGAACTGAA 58.583 47.619 0.00 0.00 42.39 3.02
2498 6034 4.583073 GGGAAGCTCTTGGTTAAAAACTGA 59.417 41.667 0.00 0.00 33.64 3.41
2518 6054 5.970640 AGAAGATCCTTTATAACACCAGGGA 59.029 40.000 1.88 0.00 0.00 4.20
2754 6825 3.728864 GCACATAGCTTGTCGAACCATTG 60.729 47.826 0.00 0.00 41.15 2.82
2794 6871 3.003585 GCACATCACACATGACTTCACAA 59.996 43.478 0.00 0.00 37.79 3.33
2795 6872 2.549329 GCACATCACACATGACTTCACA 59.451 45.455 0.00 0.00 37.79 3.58
2796 6873 2.549329 TGCACATCACACATGACTTCAC 59.451 45.455 0.00 0.00 37.79 3.18
2797 6874 2.848691 TGCACATCACACATGACTTCA 58.151 42.857 0.00 0.00 37.79 3.02
2798 6875 3.003585 TGTTGCACATCACACATGACTTC 59.996 43.478 0.00 0.00 37.79 3.01
2799 6876 2.950975 TGTTGCACATCACACATGACTT 59.049 40.909 0.00 0.00 37.79 3.01
2800 6877 2.574450 TGTTGCACATCACACATGACT 58.426 42.857 0.00 0.00 37.79 3.41
2801 6878 3.564235 ATGTTGCACATCACACATGAC 57.436 42.857 0.00 0.00 32.38 3.06
2802 6879 3.305471 CCAATGTTGCACATCACACATGA 60.305 43.478 0.00 0.00 37.97 3.07
2803 6880 2.990514 CCAATGTTGCACATCACACATG 59.009 45.455 0.39 0.00 37.97 3.21
2804 6881 2.610976 GCCAATGTTGCACATCACACAT 60.611 45.455 0.00 0.00 37.97 3.21
2805 6882 1.269673 GCCAATGTTGCACATCACACA 60.270 47.619 0.00 0.00 37.97 3.72
2806 6883 1.269673 TGCCAATGTTGCACATCACAC 60.270 47.619 0.00 0.00 37.97 3.82
2807 6884 1.038280 TGCCAATGTTGCACATCACA 58.962 45.000 0.00 0.00 37.97 3.58
2808 6885 2.063266 CTTGCCAATGTTGCACATCAC 58.937 47.619 0.00 0.00 37.97 3.06
2809 6886 1.687660 ACTTGCCAATGTTGCACATCA 59.312 42.857 0.00 0.00 37.97 3.07
2810 6887 2.063266 CACTTGCCAATGTTGCACATC 58.937 47.619 0.00 0.00 37.97 3.06
2811 6888 1.874739 GCACTTGCCAATGTTGCACAT 60.875 47.619 0.00 0.00 38.72 3.21
2812 6889 0.530211 GCACTTGCCAATGTTGCACA 60.530 50.000 0.00 0.00 38.72 4.57
2813 6890 0.249573 AGCACTTGCCAATGTTGCAC 60.250 50.000 8.11 0.00 43.38 4.57
2814 6891 0.464870 AAGCACTTGCCAATGTTGCA 59.535 45.000 8.11 0.00 43.38 4.08
2815 6892 2.288395 ACTAAGCACTTGCCAATGTTGC 60.288 45.455 0.00 0.00 43.38 4.17
2816 6893 3.648339 ACTAAGCACTTGCCAATGTTG 57.352 42.857 0.00 0.00 43.38 3.33
2817 6894 4.455877 GTCTACTAAGCACTTGCCAATGTT 59.544 41.667 0.00 0.00 43.38 2.71
2818 6895 4.003648 GTCTACTAAGCACTTGCCAATGT 58.996 43.478 0.00 0.00 43.38 2.71
2819 6896 4.002982 TGTCTACTAAGCACTTGCCAATG 58.997 43.478 0.00 0.00 43.38 2.82
2820 6897 4.286297 TGTCTACTAAGCACTTGCCAAT 57.714 40.909 0.00 0.00 43.38 3.16
2821 6898 3.762407 TGTCTACTAAGCACTTGCCAA 57.238 42.857 0.00 0.00 43.38 4.52
2822 6899 3.981071 ATGTCTACTAAGCACTTGCCA 57.019 42.857 0.00 0.00 43.38 4.92
2823 6900 4.253685 TCAATGTCTACTAAGCACTTGCC 58.746 43.478 0.00 0.00 43.38 4.52
2824 6901 6.428385 AATCAATGTCTACTAAGCACTTGC 57.572 37.500 0.00 0.00 42.49 4.01
2825 6902 7.119699 TCCAAATCAATGTCTACTAAGCACTTG 59.880 37.037 0.00 0.00 0.00 3.16
2826 6903 7.168219 TCCAAATCAATGTCTACTAAGCACTT 58.832 34.615 0.00 0.00 0.00 3.16
2827 6904 6.711277 TCCAAATCAATGTCTACTAAGCACT 58.289 36.000 0.00 0.00 0.00 4.40
2828 6905 6.985188 TCCAAATCAATGTCTACTAAGCAC 57.015 37.500 0.00 0.00 0.00 4.40
2829 6906 8.486210 AGTATCCAAATCAATGTCTACTAAGCA 58.514 33.333 0.00 0.00 0.00 3.91
2830 6907 8.894768 AGTATCCAAATCAATGTCTACTAAGC 57.105 34.615 0.00 0.00 0.00 3.09
2833 6910 8.642432 CCAGAGTATCCAAATCAATGTCTACTA 58.358 37.037 0.00 0.00 33.66 1.82
2834 6911 7.345653 TCCAGAGTATCCAAATCAATGTCTACT 59.654 37.037 0.00 0.00 33.66 2.57
2835 6912 7.500992 TCCAGAGTATCCAAATCAATGTCTAC 58.499 38.462 0.00 0.00 33.66 2.59
2836 6913 7.675161 TCCAGAGTATCCAAATCAATGTCTA 57.325 36.000 0.00 0.00 33.66 2.59
2837 6914 6.566079 TCCAGAGTATCCAAATCAATGTCT 57.434 37.500 0.00 0.00 33.66 3.41
2838 6915 6.994496 TCATCCAGAGTATCCAAATCAATGTC 59.006 38.462 0.00 0.00 33.66 3.06
2839 6916 6.903516 TCATCCAGAGTATCCAAATCAATGT 58.096 36.000 0.00 0.00 33.66 2.71
2840 6917 7.997773 ATCATCCAGAGTATCCAAATCAATG 57.002 36.000 0.00 0.00 33.66 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.