Multiple sequence alignment - TraesCS5A01G380900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G380900 chr5A 100.000 3824 0 0 1 3824 578063809 578067632 0.000000e+00 7062.0
1 TraesCS5A01G380900 chr5B 89.420 3431 212 76 480 3824 563150102 563153467 0.000000e+00 4185.0
2 TraesCS5A01G380900 chr5D 89.495 2513 145 65 481 2911 459082336 459084811 0.000000e+00 3068.0
3 TraesCS5A01G380900 chr5D 90.852 634 34 13 2903 3517 459085173 459085801 0.000000e+00 828.0
4 TraesCS5A01G380900 chr5D 88.141 312 33 4 3515 3824 459087193 459087502 6.040000e-98 368.0
5 TraesCS5A01G380900 chr2A 82.993 147 24 1 1 147 411110274 411110419 8.620000e-27 132.0
6 TraesCS5A01G380900 chr7A 83.453 139 17 2 7 145 706901993 706902125 1.440000e-24 124.0
7 TraesCS5A01G380900 chr2B 73.822 382 69 23 7 374 764158644 764159008 5.190000e-24 122.0
8 TraesCS5A01G380900 chr7D 82.143 140 18 3 7 145 614537314 614537447 3.120000e-21 113.0
9 TraesCS5A01G380900 chr7D 81.513 119 19 2 29 147 540731336 540731221 1.130000e-15 95.3
10 TraesCS5A01G380900 chr6D 79.365 126 23 3 22 147 404601607 404601729 6.810000e-13 86.1
11 TraesCS5A01G380900 chr6B 78.295 129 25 3 19 147 607006759 607006884 3.170000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G380900 chr5A 578063809 578067632 3823 False 7062.000000 7062 100.000 1 3824 1 chr5A.!!$F1 3823
1 TraesCS5A01G380900 chr5B 563150102 563153467 3365 False 4185.000000 4185 89.420 480 3824 1 chr5B.!!$F1 3344
2 TraesCS5A01G380900 chr5D 459082336 459087502 5166 False 1421.333333 3068 89.496 481 3824 3 chr5D.!!$F1 3343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 461 0.096976 CACGACATTTGGTGATCCGC 59.903 55.0 0.00 0.0 36.25 5.54 F
789 827 0.462225 GTCTCGCCCCTTTTAGCTCC 60.462 60.0 0.00 0.0 0.00 4.70 F
2673 2828 0.880278 GCTGCTTTCCTCACGTGTCA 60.880 55.0 16.51 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 2562 0.320050 TGACAGTAACAGCGGATGCA 59.680 50.000 0.0 0.0 46.23 3.96 R
2691 2846 1.071699 ACTGCCTTTTCTACCTCGCAA 59.928 47.619 0.0 0.0 0.00 4.85 R
3794 5736 0.318441 CAAGTGCGGAGGAGAGAACA 59.682 55.000 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.368391 CATGCAGATCCTACCCGC 57.632 61.111 0.00 0.00 0.00 6.13
18 19 1.665916 CATGCAGATCCTACCCGCG 60.666 63.158 0.00 0.00 0.00 6.46
19 20 1.832608 ATGCAGATCCTACCCGCGA 60.833 57.895 8.23 0.00 0.00 5.87
20 21 1.188219 ATGCAGATCCTACCCGCGAT 61.188 55.000 8.23 0.00 0.00 4.58
21 22 1.373497 GCAGATCCTACCCGCGATG 60.373 63.158 8.23 0.00 0.00 3.84
22 23 1.806461 GCAGATCCTACCCGCGATGA 61.806 60.000 8.23 0.00 0.00 2.92
23 24 0.242286 CAGATCCTACCCGCGATGAG 59.758 60.000 8.23 0.10 0.00 2.90
24 25 0.178987 AGATCCTACCCGCGATGAGT 60.179 55.000 8.23 1.45 0.00 3.41
25 26 1.073444 AGATCCTACCCGCGATGAGTA 59.927 52.381 8.23 2.73 0.00 2.59
26 27 2.093106 GATCCTACCCGCGATGAGTAT 58.907 52.381 8.23 0.00 0.00 2.12
27 28 1.531423 TCCTACCCGCGATGAGTATC 58.469 55.000 8.23 0.00 0.00 2.24
28 29 0.526662 CCTACCCGCGATGAGTATCC 59.473 60.000 8.23 0.00 0.00 2.59
29 30 0.168348 CTACCCGCGATGAGTATCCG 59.832 60.000 8.23 0.00 0.00 4.18
30 31 1.239296 TACCCGCGATGAGTATCCGG 61.239 60.000 8.23 0.00 42.15 5.14
31 32 2.265904 CCCGCGATGAGTATCCGGA 61.266 63.158 6.61 6.61 43.69 5.14
32 33 1.595993 CCCGCGATGAGTATCCGGAT 61.596 60.000 22.95 22.95 43.69 4.18
33 34 0.243907 CCGCGATGAGTATCCGGATT 59.756 55.000 24.71 5.01 43.69 3.01
34 35 1.340658 CGCGATGAGTATCCGGATTG 58.659 55.000 24.71 2.34 0.00 2.67
35 36 1.714794 GCGATGAGTATCCGGATTGG 58.285 55.000 24.71 6.49 40.09 3.16
53 54 2.593026 TGGAATCCCAAAACACACTCC 58.407 47.619 0.00 0.00 40.09 3.85
54 55 2.091610 TGGAATCCCAAAACACACTCCA 60.092 45.455 0.00 0.00 40.09 3.86
55 56 3.165071 GGAATCCCAAAACACACTCCAT 58.835 45.455 0.00 0.00 0.00 3.41
56 57 3.578282 GGAATCCCAAAACACACTCCATT 59.422 43.478 0.00 0.00 0.00 3.16
57 58 4.770010 GGAATCCCAAAACACACTCCATTA 59.230 41.667 0.00 0.00 0.00 1.90
58 59 5.422012 GGAATCCCAAAACACACTCCATTAT 59.578 40.000 0.00 0.00 0.00 1.28
59 60 5.920193 ATCCCAAAACACACTCCATTATG 57.080 39.130 0.00 0.00 0.00 1.90
60 61 4.735369 TCCCAAAACACACTCCATTATGT 58.265 39.130 0.00 0.00 0.00 2.29
83 84 5.868454 TGGGATATCCAACATGACTATGTG 58.132 41.667 23.27 0.00 46.54 3.21
84 85 5.369404 TGGGATATCCAACATGACTATGTGT 59.631 40.000 23.27 0.00 46.54 3.72
85 86 6.126507 TGGGATATCCAACATGACTATGTGTT 60.127 38.462 23.27 0.00 46.54 3.32
86 87 6.205464 GGGATATCCAACATGACTATGTGTTG 59.795 42.308 23.27 10.39 46.54 3.33
92 93 3.797039 ACATGACTATGTGTTGATCCCG 58.203 45.455 0.00 0.00 45.54 5.14
93 94 3.197766 ACATGACTATGTGTTGATCCCGT 59.802 43.478 0.00 0.00 45.54 5.28
94 95 4.404394 ACATGACTATGTGTTGATCCCGTA 59.596 41.667 0.00 0.00 45.54 4.02
95 96 5.070446 ACATGACTATGTGTTGATCCCGTAT 59.930 40.000 0.00 0.00 45.54 3.06
96 97 4.944048 TGACTATGTGTTGATCCCGTATG 58.056 43.478 0.00 0.00 0.00 2.39
97 98 4.647399 TGACTATGTGTTGATCCCGTATGA 59.353 41.667 0.00 0.00 0.00 2.15
98 99 5.201713 ACTATGTGTTGATCCCGTATGAG 57.798 43.478 0.00 0.00 0.00 2.90
99 100 4.893524 ACTATGTGTTGATCCCGTATGAGA 59.106 41.667 0.00 0.00 0.00 3.27
100 101 4.753516 ATGTGTTGATCCCGTATGAGAA 57.246 40.909 0.00 0.00 0.00 2.87
101 102 4.123497 TGTGTTGATCCCGTATGAGAAG 57.877 45.455 0.00 0.00 0.00 2.85
102 103 3.118775 TGTGTTGATCCCGTATGAGAAGG 60.119 47.826 0.00 0.00 0.00 3.46
103 104 3.132289 GTGTTGATCCCGTATGAGAAGGA 59.868 47.826 0.00 0.00 0.00 3.36
104 105 3.384789 TGTTGATCCCGTATGAGAAGGAG 59.615 47.826 0.00 0.00 0.00 3.69
105 106 2.598565 TGATCCCGTATGAGAAGGAGG 58.401 52.381 0.00 0.00 0.00 4.30
106 107 2.177016 TGATCCCGTATGAGAAGGAGGA 59.823 50.000 0.00 0.00 0.00 3.71
107 108 2.366640 TCCCGTATGAGAAGGAGGAG 57.633 55.000 0.00 0.00 0.00 3.69
108 109 1.569548 TCCCGTATGAGAAGGAGGAGT 59.430 52.381 0.00 0.00 0.00 3.85
109 110 2.781757 TCCCGTATGAGAAGGAGGAGTA 59.218 50.000 0.00 0.00 0.00 2.59
110 111 3.203710 TCCCGTATGAGAAGGAGGAGTAA 59.796 47.826 0.00 0.00 0.00 2.24
111 112 3.318557 CCCGTATGAGAAGGAGGAGTAAC 59.681 52.174 0.00 0.00 0.00 2.50
112 113 3.318557 CCGTATGAGAAGGAGGAGTAACC 59.681 52.174 0.00 0.00 39.35 2.85
124 125 3.357166 GGAGTAACCTCGCTCATACAG 57.643 52.381 0.00 0.00 38.70 2.74
125 126 2.544069 GGAGTAACCTCGCTCATACAGC 60.544 54.545 0.00 0.00 38.70 4.40
126 127 4.802314 GGAGTAACCTCGCTCATACAGCT 61.802 52.174 0.00 0.00 39.89 4.24
127 128 6.563958 GGAGTAACCTCGCTCATACAGCTC 62.564 54.167 0.00 0.00 39.89 4.09
135 136 1.869767 GCTCATACAGCTCAAATCGGG 59.130 52.381 0.00 0.00 45.83 5.14
136 137 2.487934 CTCATACAGCTCAAATCGGGG 58.512 52.381 0.00 0.00 0.00 5.73
137 138 2.103094 CTCATACAGCTCAAATCGGGGA 59.897 50.000 0.00 0.00 0.00 4.81
138 139 2.158957 TCATACAGCTCAAATCGGGGAC 60.159 50.000 0.00 0.00 0.00 4.46
153 154 2.947448 GGGACCACATGCTTCATTTC 57.053 50.000 0.00 0.00 0.00 2.17
154 155 2.170166 GGGACCACATGCTTCATTTCA 58.830 47.619 0.00 0.00 0.00 2.69
155 156 2.165030 GGGACCACATGCTTCATTTCAG 59.835 50.000 0.00 0.00 0.00 3.02
156 157 3.084039 GGACCACATGCTTCATTTCAGA 58.916 45.455 0.00 0.00 0.00 3.27
157 158 3.119708 GGACCACATGCTTCATTTCAGAC 60.120 47.826 0.00 0.00 0.00 3.51
158 159 2.485426 ACCACATGCTTCATTTCAGACG 59.515 45.455 0.00 0.00 0.00 4.18
159 160 2.743664 CCACATGCTTCATTTCAGACGA 59.256 45.455 0.00 0.00 0.00 4.20
160 161 3.425359 CCACATGCTTCATTTCAGACGAC 60.425 47.826 0.00 0.00 0.00 4.34
161 162 3.187022 CACATGCTTCATTTCAGACGACA 59.813 43.478 0.00 0.00 0.00 4.35
162 163 3.814842 ACATGCTTCATTTCAGACGACAA 59.185 39.130 0.00 0.00 0.00 3.18
163 164 3.878086 TGCTTCATTTCAGACGACAAC 57.122 42.857 0.00 0.00 0.00 3.32
164 165 2.220824 TGCTTCATTTCAGACGACAACG 59.779 45.455 0.00 0.00 45.75 4.10
165 166 2.475111 GCTTCATTTCAGACGACAACGA 59.525 45.455 0.00 0.00 42.66 3.85
166 167 3.661936 GCTTCATTTCAGACGACAACGAC 60.662 47.826 0.00 0.00 42.66 4.34
167 168 2.048498 TCATTTCAGACGACAACGACG 58.952 47.619 0.00 0.00 42.66 5.12
168 169 2.048498 CATTTCAGACGACAACGACGA 58.952 47.619 0.00 0.00 42.66 4.20
169 170 1.469917 TTTCAGACGACAACGACGAC 58.530 50.000 0.00 0.00 42.66 4.34
170 171 0.655337 TTCAGACGACAACGACGACG 60.655 55.000 5.58 5.58 42.66 5.12
171 172 2.073220 CAGACGACAACGACGACGG 61.073 63.158 12.58 0.00 44.46 4.79
172 173 3.456039 GACGACAACGACGACGGC 61.456 66.667 12.58 0.00 44.46 5.68
173 174 3.868951 GACGACAACGACGACGGCT 62.869 63.158 12.58 0.00 44.46 5.52
174 175 3.164011 CGACAACGACGACGGCTC 61.164 66.667 12.58 2.02 44.46 4.70
175 176 3.164011 GACAACGACGACGGCTCG 61.164 66.667 12.58 8.32 46.06 5.03
176 177 3.584250 GACAACGACGACGGCTCGA 62.584 63.158 15.50 0.00 43.06 4.04
177 178 2.427905 CAACGACGACGGCTCGAA 60.428 61.111 15.50 0.00 43.06 3.71
178 179 2.428071 AACGACGACGGCTCGAAC 60.428 61.111 15.50 3.12 43.06 3.95
179 180 3.185082 AACGACGACGGCTCGAACA 62.185 57.895 15.50 0.00 43.06 3.18
180 181 2.427905 CGACGACGGCTCGAACAA 60.428 61.111 12.16 0.00 43.06 2.83
181 182 2.012414 CGACGACGGCTCGAACAAA 61.012 57.895 12.16 0.00 43.06 2.83
182 183 1.773496 GACGACGGCTCGAACAAAG 59.227 57.895 12.16 0.00 43.06 2.77
183 184 0.938168 GACGACGGCTCGAACAAAGT 60.938 55.000 12.16 0.00 43.06 2.66
184 185 0.529119 ACGACGGCTCGAACAAAGTT 60.529 50.000 12.16 0.00 43.06 2.66
185 186 0.111266 CGACGGCTCGAACAAAGTTG 60.111 55.000 1.50 0.00 43.06 3.16
186 187 0.384353 GACGGCTCGAACAAAGTTGC 60.384 55.000 1.50 0.00 0.00 4.17
187 188 1.092921 ACGGCTCGAACAAAGTTGCA 61.093 50.000 1.50 0.00 0.00 4.08
188 189 0.384725 CGGCTCGAACAAAGTTGCAG 60.385 55.000 0.00 0.00 0.00 4.41
189 190 0.944386 GGCTCGAACAAAGTTGCAGA 59.056 50.000 0.00 0.00 0.00 4.26
190 191 1.537202 GGCTCGAACAAAGTTGCAGAT 59.463 47.619 0.00 0.00 0.00 2.90
191 192 2.578495 GCTCGAACAAAGTTGCAGATG 58.422 47.619 0.00 0.00 0.00 2.90
192 193 2.666619 GCTCGAACAAAGTTGCAGATGG 60.667 50.000 0.00 0.00 0.00 3.51
193 194 2.549754 CTCGAACAAAGTTGCAGATGGT 59.450 45.455 0.00 0.00 0.00 3.55
194 195 2.290367 TCGAACAAAGTTGCAGATGGTG 59.710 45.455 0.00 0.00 0.00 4.17
195 196 2.290367 CGAACAAAGTTGCAGATGGTGA 59.710 45.455 0.00 0.00 0.00 4.02
196 197 3.632189 GAACAAAGTTGCAGATGGTGAC 58.368 45.455 0.00 0.00 0.00 3.67
208 209 3.543884 TGGTGACAAAGGTATCGGC 57.456 52.632 0.00 0.00 37.44 5.54
209 210 0.390603 TGGTGACAAAGGTATCGGCG 60.391 55.000 0.00 0.00 37.44 6.46
210 211 0.108520 GGTGACAAAGGTATCGGCGA 60.109 55.000 13.87 13.87 0.00 5.54
211 212 0.997196 GTGACAAAGGTATCGGCGAC 59.003 55.000 13.76 0.00 0.00 5.19
212 213 0.108520 TGACAAAGGTATCGGCGACC 60.109 55.000 13.76 11.29 37.22 4.79
216 217 3.522808 AGGTATCGGCGACCTCAC 58.477 61.111 13.76 8.00 44.33 3.51
217 218 2.125961 AGGTATCGGCGACCTCACC 61.126 63.158 13.76 17.00 44.33 4.02
222 223 4.873129 CGGCGACCTCACCGGATG 62.873 72.222 9.46 2.48 45.74 3.51
223 224 4.530857 GGCGACCTCACCGGATGG 62.531 72.222 9.46 9.69 42.84 3.51
224 225 3.458163 GCGACCTCACCGGATGGA 61.458 66.667 9.46 1.08 39.21 3.41
225 226 2.797278 GCGACCTCACCGGATGGAT 61.797 63.158 9.46 0.00 39.21 3.41
226 227 1.364171 CGACCTCACCGGATGGATC 59.636 63.158 9.46 6.56 39.21 3.36
227 228 1.749033 GACCTCACCGGATGGATCC 59.251 63.158 9.46 4.20 43.65 3.36
228 229 0.760945 GACCTCACCGGATGGATCCT 60.761 60.000 9.46 0.00 44.93 3.24
229 230 0.760945 ACCTCACCGGATGGATCCTC 60.761 60.000 9.46 7.92 44.93 3.71
230 231 0.760567 CCTCACCGGATGGATCCTCA 60.761 60.000 9.46 0.00 44.93 3.86
231 232 0.390860 CTCACCGGATGGATCCTCAC 59.609 60.000 9.46 4.16 44.93 3.51
232 233 1.048724 TCACCGGATGGATCCTCACC 61.049 60.000 9.46 12.16 44.93 4.02
233 234 1.050988 CACCGGATGGATCCTCACCT 61.051 60.000 9.46 0.00 44.93 4.00
234 235 0.561184 ACCGGATGGATCCTCACCTA 59.439 55.000 9.46 0.00 44.93 3.08
235 236 1.261480 CCGGATGGATCCTCACCTAG 58.739 60.000 14.23 4.53 44.93 3.02
236 237 1.481428 CCGGATGGATCCTCACCTAGT 60.481 57.143 14.23 0.00 44.93 2.57
237 238 2.320781 CGGATGGATCCTCACCTAGTT 58.679 52.381 14.23 0.00 44.93 2.24
238 239 2.700897 CGGATGGATCCTCACCTAGTTT 59.299 50.000 14.23 0.00 44.93 2.66
239 240 3.134804 CGGATGGATCCTCACCTAGTTTT 59.865 47.826 14.23 0.00 44.93 2.43
240 241 4.344102 CGGATGGATCCTCACCTAGTTTTA 59.656 45.833 14.23 0.00 44.93 1.52
241 242 5.509840 CGGATGGATCCTCACCTAGTTTTAG 60.510 48.000 14.23 0.00 44.93 1.85
242 243 4.755266 TGGATCCTCACCTAGTTTTAGC 57.245 45.455 14.23 0.00 0.00 3.09
243 244 4.362677 TGGATCCTCACCTAGTTTTAGCT 58.637 43.478 14.23 0.00 0.00 3.32
244 245 4.162320 TGGATCCTCACCTAGTTTTAGCTG 59.838 45.833 14.23 0.00 0.00 4.24
245 246 4.443598 GGATCCTCACCTAGTTTTAGCTGG 60.444 50.000 3.84 0.00 0.00 4.85
246 247 3.786553 TCCTCACCTAGTTTTAGCTGGA 58.213 45.455 0.00 0.00 0.00 3.86
247 248 4.164981 TCCTCACCTAGTTTTAGCTGGAA 58.835 43.478 0.00 0.00 0.00 3.53
248 249 4.783227 TCCTCACCTAGTTTTAGCTGGAAT 59.217 41.667 0.00 0.00 0.00 3.01
249 250 5.250774 TCCTCACCTAGTTTTAGCTGGAATT 59.749 40.000 0.00 0.00 0.00 2.17
250 251 6.442564 TCCTCACCTAGTTTTAGCTGGAATTA 59.557 38.462 0.00 0.00 0.00 1.40
251 252 7.037873 TCCTCACCTAGTTTTAGCTGGAATTAA 60.038 37.037 0.00 0.00 0.00 1.40
252 253 7.775561 CCTCACCTAGTTTTAGCTGGAATTAAT 59.224 37.037 0.00 0.00 0.00 1.40
253 254 9.178758 CTCACCTAGTTTTAGCTGGAATTAATT 57.821 33.333 0.00 0.00 0.00 1.40
254 255 9.528489 TCACCTAGTTTTAGCTGGAATTAATTT 57.472 29.630 1.43 0.00 0.00 1.82
285 286 7.184800 AGGTTGAATTTGTTTAAATTTCGCC 57.815 32.000 0.00 0.00 44.35 5.54
286 287 6.203915 AGGTTGAATTTGTTTAAATTTCGCCC 59.796 34.615 0.00 0.00 44.35 6.13
287 288 5.830900 TGAATTTGTTTAAATTTCGCCCG 57.169 34.783 0.00 0.00 44.35 6.13
288 289 5.290386 TGAATTTGTTTAAATTTCGCCCGT 58.710 33.333 0.00 0.00 44.35 5.28
289 290 5.753921 TGAATTTGTTTAAATTTCGCCCGTT 59.246 32.000 0.00 0.00 44.35 4.44
290 291 6.258068 TGAATTTGTTTAAATTTCGCCCGTTT 59.742 30.769 0.00 0.00 44.35 3.60
291 292 5.391060 TTTGTTTAAATTTCGCCCGTTTG 57.609 34.783 0.00 0.00 0.00 2.93
292 293 3.381949 TGTTTAAATTTCGCCCGTTTGG 58.618 40.909 0.00 0.00 37.09 3.28
293 294 3.181478 TGTTTAAATTTCGCCCGTTTGGT 60.181 39.130 0.00 0.00 36.04 3.67
294 295 3.729862 TTAAATTTCGCCCGTTTGGTT 57.270 38.095 0.00 0.00 36.04 3.67
295 296 1.859383 AAATTTCGCCCGTTTGGTTG 58.141 45.000 0.00 0.00 36.04 3.77
296 297 0.598942 AATTTCGCCCGTTTGGTTGC 60.599 50.000 0.00 0.00 36.04 4.17
297 298 1.739338 ATTTCGCCCGTTTGGTTGCA 61.739 50.000 0.00 0.00 36.04 4.08
298 299 1.945354 TTTCGCCCGTTTGGTTGCAA 61.945 50.000 0.00 0.00 36.04 4.08
299 300 1.739338 TTCGCCCGTTTGGTTGCAAT 61.739 50.000 0.59 0.00 36.04 3.56
300 301 0.889638 TCGCCCGTTTGGTTGCAATA 60.890 50.000 0.59 0.00 36.04 1.90
301 302 0.172352 CGCCCGTTTGGTTGCAATAT 59.828 50.000 0.59 0.00 36.04 1.28
302 303 1.402259 CGCCCGTTTGGTTGCAATATA 59.598 47.619 0.59 0.00 36.04 0.86
303 304 2.793237 CGCCCGTTTGGTTGCAATATAC 60.793 50.000 0.59 0.00 36.04 1.47
304 305 2.480587 GCCCGTTTGGTTGCAATATACC 60.481 50.000 0.59 0.00 36.04 2.73
305 306 2.223386 CCCGTTTGGTTGCAATATACCG 60.223 50.000 0.59 3.11 37.23 4.02
306 307 2.678836 CCGTTTGGTTGCAATATACCGA 59.321 45.455 0.59 0.00 37.23 4.69
307 308 3.127203 CCGTTTGGTTGCAATATACCGAA 59.873 43.478 0.59 2.78 37.23 4.30
310 311 5.968528 TTTGGTTGCAATATACCGAACTT 57.031 34.783 0.59 0.00 37.23 2.66
311 312 5.968528 TTGGTTGCAATATACCGAACTTT 57.031 34.783 0.59 0.00 37.23 2.66
312 313 5.303747 TGGTTGCAATATACCGAACTTTG 57.696 39.130 0.59 0.00 37.23 2.77
313 314 4.762765 TGGTTGCAATATACCGAACTTTGT 59.237 37.500 0.59 0.00 37.23 2.83
314 315 5.241949 TGGTTGCAATATACCGAACTTTGTT 59.758 36.000 0.59 0.00 37.23 2.83
315 316 6.153756 GGTTGCAATATACCGAACTTTGTTT 58.846 36.000 0.59 0.00 0.00 2.83
316 317 7.040617 TGGTTGCAATATACCGAACTTTGTTTA 60.041 33.333 0.59 0.00 37.23 2.01
317 318 7.808856 GGTTGCAATATACCGAACTTTGTTTAA 59.191 33.333 0.59 0.00 0.00 1.52
318 319 9.182933 GTTGCAATATACCGAACTTTGTTTAAA 57.817 29.630 0.59 0.00 0.00 1.52
319 320 9.915629 TTGCAATATACCGAACTTTGTTTAAAT 57.084 25.926 0.00 0.00 0.00 1.40
320 321 9.915629 TGCAATATACCGAACTTTGTTTAAATT 57.084 25.926 0.00 0.00 0.00 1.82
326 327 6.146898 ACCGAACTTTGTTTAAATTCCATCG 58.853 36.000 0.00 0.00 0.00 3.84
327 328 6.146898 CCGAACTTTGTTTAAATTCCATCGT 58.853 36.000 0.00 0.00 0.00 3.73
328 329 6.639279 CCGAACTTTGTTTAAATTCCATCGTT 59.361 34.615 0.00 0.00 0.00 3.85
329 330 7.168469 CCGAACTTTGTTTAAATTCCATCGTTT 59.832 33.333 0.00 0.00 0.00 3.60
330 331 8.536407 CGAACTTTGTTTAAATTCCATCGTTTT 58.464 29.630 0.00 0.00 0.00 2.43
331 332 9.631639 GAACTTTGTTTAAATTCCATCGTTTTG 57.368 29.630 0.00 0.00 0.00 2.44
332 333 7.626446 ACTTTGTTTAAATTCCATCGTTTTGC 58.374 30.769 0.00 0.00 0.00 3.68
333 334 7.494298 ACTTTGTTTAAATTCCATCGTTTTGCT 59.506 29.630 0.00 0.00 0.00 3.91
334 335 7.778470 TTGTTTAAATTCCATCGTTTTGCTT 57.222 28.000 0.00 0.00 0.00 3.91
335 336 7.778470 TGTTTAAATTCCATCGTTTTGCTTT 57.222 28.000 0.00 0.00 0.00 3.51
336 337 8.202745 TGTTTAAATTCCATCGTTTTGCTTTT 57.797 26.923 0.00 0.00 0.00 2.27
337 338 9.314321 TGTTTAAATTCCATCGTTTTGCTTTTA 57.686 25.926 0.00 0.00 0.00 1.52
338 339 9.575702 GTTTAAATTCCATCGTTTTGCTTTTAC 57.424 29.630 0.00 0.00 0.00 2.01
339 340 9.535878 TTTAAATTCCATCGTTTTGCTTTTACT 57.464 25.926 0.00 0.00 0.00 2.24
340 341 9.535878 TTAAATTCCATCGTTTTGCTTTTACTT 57.464 25.926 0.00 0.00 0.00 2.24
341 342 7.637709 AATTCCATCGTTTTGCTTTTACTTC 57.362 32.000 0.00 0.00 0.00 3.01
342 343 5.116069 TCCATCGTTTTGCTTTTACTTCC 57.884 39.130 0.00 0.00 0.00 3.46
343 344 4.580995 TCCATCGTTTTGCTTTTACTTCCA 59.419 37.500 0.00 0.00 0.00 3.53
344 345 5.242838 TCCATCGTTTTGCTTTTACTTCCAT 59.757 36.000 0.00 0.00 0.00 3.41
345 346 5.572896 CCATCGTTTTGCTTTTACTTCCATC 59.427 40.000 0.00 0.00 0.00 3.51
346 347 6.381801 CATCGTTTTGCTTTTACTTCCATCT 58.618 36.000 0.00 0.00 0.00 2.90
347 348 5.757886 TCGTTTTGCTTTTACTTCCATCTG 58.242 37.500 0.00 0.00 0.00 2.90
348 349 5.298276 TCGTTTTGCTTTTACTTCCATCTGT 59.702 36.000 0.00 0.00 0.00 3.41
349 350 5.399301 CGTTTTGCTTTTACTTCCATCTGTG 59.601 40.000 0.00 0.00 0.00 3.66
350 351 6.273071 GTTTTGCTTTTACTTCCATCTGTGT 58.727 36.000 0.00 0.00 0.00 3.72
351 352 6.463995 TTTGCTTTTACTTCCATCTGTGTT 57.536 33.333 0.00 0.00 0.00 3.32
352 353 6.463995 TTGCTTTTACTTCCATCTGTGTTT 57.536 33.333 0.00 0.00 0.00 2.83
353 354 5.830912 TGCTTTTACTTCCATCTGTGTTTG 58.169 37.500 0.00 0.00 0.00 2.93
354 355 5.359576 TGCTTTTACTTCCATCTGTGTTTGT 59.640 36.000 0.00 0.00 0.00 2.83
355 356 5.687285 GCTTTTACTTCCATCTGTGTTTGTG 59.313 40.000 0.00 0.00 0.00 3.33
356 357 4.829064 TTACTTCCATCTGTGTTTGTGC 57.171 40.909 0.00 0.00 0.00 4.57
357 358 1.603802 ACTTCCATCTGTGTTTGTGCG 59.396 47.619 0.00 0.00 0.00 5.34
358 359 0.310543 TTCCATCTGTGTTTGTGCGC 59.689 50.000 0.00 0.00 0.00 6.09
359 360 1.440850 CCATCTGTGTTTGTGCGCG 60.441 57.895 0.00 0.00 0.00 6.86
360 361 1.440850 CATCTGTGTTTGTGCGCGG 60.441 57.895 8.83 0.00 0.00 6.46
361 362 1.891919 ATCTGTGTTTGTGCGCGGT 60.892 52.632 8.83 0.00 0.00 5.68
362 363 1.841663 ATCTGTGTTTGTGCGCGGTC 61.842 55.000 8.83 0.00 0.00 4.79
363 364 2.512745 TGTGTTTGTGCGCGGTCT 60.513 55.556 8.83 0.00 0.00 3.85
364 365 2.052237 GTGTTTGTGCGCGGTCTG 60.052 61.111 8.83 0.00 0.00 3.51
365 366 2.512745 TGTTTGTGCGCGGTCTGT 60.513 55.556 8.83 0.00 0.00 3.41
366 367 2.109739 TGTTTGTGCGCGGTCTGTT 61.110 52.632 8.83 0.00 0.00 3.16
367 368 1.063488 GTTTGTGCGCGGTCTGTTT 59.937 52.632 8.83 0.00 0.00 2.83
368 369 0.524604 GTTTGTGCGCGGTCTGTTTT 60.525 50.000 8.83 0.00 0.00 2.43
369 370 1.015109 TTTGTGCGCGGTCTGTTTTA 58.985 45.000 8.83 0.00 0.00 1.52
370 371 1.015109 TTGTGCGCGGTCTGTTTTAA 58.985 45.000 8.83 0.00 0.00 1.52
371 372 1.015109 TGTGCGCGGTCTGTTTTAAA 58.985 45.000 8.83 0.00 0.00 1.52
372 373 1.604755 TGTGCGCGGTCTGTTTTAAAT 59.395 42.857 8.83 0.00 0.00 1.40
373 374 1.976045 GTGCGCGGTCTGTTTTAAATG 59.024 47.619 8.83 0.00 0.00 2.32
374 375 1.068885 TGCGCGGTCTGTTTTAAATGG 60.069 47.619 8.83 0.00 0.00 3.16
375 376 1.068816 GCGCGGTCTGTTTTAAATGGT 60.069 47.619 8.83 0.00 0.00 3.55
376 377 2.606065 GCGCGGTCTGTTTTAAATGGTT 60.606 45.455 8.83 0.00 0.00 3.67
377 378 2.977169 CGCGGTCTGTTTTAAATGGTTG 59.023 45.455 0.00 0.00 0.00 3.77
378 379 3.304123 CGCGGTCTGTTTTAAATGGTTGA 60.304 43.478 0.00 0.00 0.00 3.18
379 380 4.226761 GCGGTCTGTTTTAAATGGTTGAG 58.773 43.478 0.00 0.00 0.00 3.02
380 381 4.226761 CGGTCTGTTTTAAATGGTTGAGC 58.773 43.478 0.00 0.00 0.00 4.26
381 382 4.556233 GGTCTGTTTTAAATGGTTGAGCC 58.444 43.478 0.00 0.00 37.90 4.70
382 383 4.226761 GTCTGTTTTAAATGGTTGAGCCG 58.773 43.478 0.00 0.00 41.21 5.52
383 384 2.986479 CTGTTTTAAATGGTTGAGCCGC 59.014 45.455 0.00 0.00 41.21 6.53
384 385 1.982913 GTTTTAAATGGTTGAGCCGCG 59.017 47.619 0.00 0.00 41.21 6.46
385 386 1.240256 TTTAAATGGTTGAGCCGCGT 58.760 45.000 4.92 0.00 41.21 6.01
386 387 1.240256 TTAAATGGTTGAGCCGCGTT 58.760 45.000 4.92 0.00 41.21 4.84
387 388 0.519519 TAAATGGTTGAGCCGCGTTG 59.480 50.000 4.92 0.00 41.21 4.10
388 389 2.141122 AAATGGTTGAGCCGCGTTGG 62.141 55.000 4.92 0.00 41.21 3.77
389 390 3.545124 ATGGTTGAGCCGCGTTGGA 62.545 57.895 4.92 0.00 42.00 3.53
390 391 2.746277 GGTTGAGCCGCGTTGGAT 60.746 61.111 4.92 0.00 42.00 3.41
391 392 2.480555 GTTGAGCCGCGTTGGATG 59.519 61.111 4.92 0.00 42.00 3.51
392 393 2.032634 GTTGAGCCGCGTTGGATGA 61.033 57.895 4.92 0.00 42.00 2.92
393 394 2.032634 TTGAGCCGCGTTGGATGAC 61.033 57.895 4.92 0.00 42.00 3.06
394 395 2.125512 GAGCCGCGTTGGATGACT 60.126 61.111 4.92 0.00 42.00 3.41
395 396 1.741770 GAGCCGCGTTGGATGACTT 60.742 57.895 4.92 0.00 42.00 3.01
396 397 1.696832 GAGCCGCGTTGGATGACTTC 61.697 60.000 4.92 0.00 42.00 3.01
397 398 2.032634 GCCGCGTTGGATGACTTCA 61.033 57.895 4.92 0.00 42.00 3.02
398 399 1.970917 GCCGCGTTGGATGACTTCAG 61.971 60.000 4.92 0.00 42.00 3.02
399 400 0.670546 CCGCGTTGGATGACTTCAGT 60.671 55.000 4.92 0.00 42.00 3.41
400 401 1.403647 CCGCGTTGGATGACTTCAGTA 60.404 52.381 4.92 0.00 42.00 2.74
401 402 1.920574 CGCGTTGGATGACTTCAGTAG 59.079 52.381 0.00 0.00 0.00 2.57
402 403 1.661112 GCGTTGGATGACTTCAGTAGC 59.339 52.381 0.00 0.00 0.00 3.58
403 404 2.675317 GCGTTGGATGACTTCAGTAGCT 60.675 50.000 0.00 0.00 0.00 3.32
404 405 3.182967 CGTTGGATGACTTCAGTAGCTC 58.817 50.000 0.00 0.00 0.00 4.09
405 406 3.182967 GTTGGATGACTTCAGTAGCTCG 58.817 50.000 0.00 0.00 0.00 5.03
406 407 1.751351 TGGATGACTTCAGTAGCTCGG 59.249 52.381 0.00 0.00 0.00 4.63
407 408 1.751924 GGATGACTTCAGTAGCTCGGT 59.248 52.381 0.00 0.00 0.00 4.69
408 409 2.166664 GGATGACTTCAGTAGCTCGGTT 59.833 50.000 0.00 0.00 0.00 4.44
409 410 2.724977 TGACTTCAGTAGCTCGGTTG 57.275 50.000 0.00 0.00 0.00 3.77
410 411 1.272490 TGACTTCAGTAGCTCGGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
411 412 1.544691 GACTTCAGTAGCTCGGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
412 413 2.166664 GACTTCAGTAGCTCGGTTGGAT 59.833 50.000 0.00 0.00 0.00 3.41
413 414 2.093973 ACTTCAGTAGCTCGGTTGGATG 60.094 50.000 0.00 0.00 0.00 3.51
414 415 1.557099 TCAGTAGCTCGGTTGGATGT 58.443 50.000 0.00 0.00 0.00 3.06
415 416 1.476891 TCAGTAGCTCGGTTGGATGTC 59.523 52.381 0.00 0.00 0.00 3.06
416 417 0.824759 AGTAGCTCGGTTGGATGTCC 59.175 55.000 0.00 0.00 0.00 4.02
417 418 0.527817 GTAGCTCGGTTGGATGTCCG 60.528 60.000 0.00 0.00 46.93 4.79
426 427 4.203076 GGATGTCCGACGTCCCGG 62.203 72.222 24.33 9.88 46.23 5.73
449 450 2.431942 GTCCGCGGACACGACATT 60.432 61.111 44.88 0.00 44.02 2.71
450 451 2.025418 GTCCGCGGACACGACATTT 61.025 57.895 44.88 0.00 44.02 2.32
451 452 2.024868 TCCGCGGACACGACATTTG 61.025 57.895 27.28 0.00 44.60 2.32
452 453 2.474266 CGCGGACACGACATTTGG 59.526 61.111 0.00 0.00 44.60 3.28
453 454 2.314647 CGCGGACACGACATTTGGT 61.315 57.895 0.00 0.00 44.60 3.67
454 455 1.206578 GCGGACACGACATTTGGTG 59.793 57.895 0.00 0.00 44.60 4.17
455 456 1.225376 GCGGACACGACATTTGGTGA 61.225 55.000 0.66 0.00 44.60 4.02
456 457 1.438651 CGGACACGACATTTGGTGAT 58.561 50.000 0.66 0.00 44.60 3.06
457 458 1.393539 CGGACACGACATTTGGTGATC 59.606 52.381 0.66 0.00 44.60 2.92
458 459 1.737793 GGACACGACATTTGGTGATCC 59.262 52.381 0.66 1.42 37.58 3.36
459 460 1.393539 GACACGACATTTGGTGATCCG 59.606 52.381 0.66 0.00 37.58 4.18
460 461 0.096976 CACGACATTTGGTGATCCGC 59.903 55.000 0.00 0.00 36.25 5.54
461 462 1.348250 CGACATTTGGTGATCCGCG 59.652 57.895 0.00 0.00 36.30 6.46
462 463 1.358725 CGACATTTGGTGATCCGCGT 61.359 55.000 4.92 0.00 36.30 6.01
463 464 0.802494 GACATTTGGTGATCCGCGTT 59.198 50.000 4.92 0.00 36.30 4.84
464 465 0.521291 ACATTTGGTGATCCGCGTTG 59.479 50.000 4.92 0.00 36.30 4.10
465 466 0.801872 CATTTGGTGATCCGCGTTGA 59.198 50.000 4.92 0.00 36.30 3.18
466 467 1.198867 CATTTGGTGATCCGCGTTGAA 59.801 47.619 4.92 0.00 36.30 2.69
467 468 1.309950 TTTGGTGATCCGCGTTGAAA 58.690 45.000 4.92 0.00 36.30 2.69
468 469 1.529226 TTGGTGATCCGCGTTGAAAT 58.471 45.000 4.92 0.00 36.30 2.17
469 470 1.529226 TGGTGATCCGCGTTGAAATT 58.471 45.000 4.92 0.00 36.30 1.82
470 471 1.198867 TGGTGATCCGCGTTGAAATTG 59.801 47.619 4.92 0.00 36.30 2.32
471 472 1.259316 GTGATCCGCGTTGAAATTGC 58.741 50.000 4.92 0.00 0.00 3.56
472 473 0.877743 TGATCCGCGTTGAAATTGCA 59.122 45.000 4.92 0.00 0.00 4.08
473 474 1.259316 GATCCGCGTTGAAATTGCAC 58.741 50.000 4.92 0.00 0.00 4.57
474 475 0.881118 ATCCGCGTTGAAATTGCACT 59.119 45.000 4.92 0.00 0.00 4.40
475 476 1.514003 TCCGCGTTGAAATTGCACTA 58.486 45.000 4.92 0.00 0.00 2.74
476 477 1.874231 TCCGCGTTGAAATTGCACTAA 59.126 42.857 4.92 0.00 0.00 2.24
477 478 2.095969 TCCGCGTTGAAATTGCACTAAG 60.096 45.455 4.92 0.00 0.00 2.18
478 479 2.095969 CCGCGTTGAAATTGCACTAAGA 60.096 45.455 4.92 0.00 0.00 2.10
487 488 8.534778 GTTGAAATTGCACTAAGAAAGAAGTTG 58.465 33.333 0.00 0.00 0.00 3.16
490 491 6.566197 ATTGCACTAAGAAAGAAGTTGAGG 57.434 37.500 0.00 0.00 0.00 3.86
541 547 1.488390 AAATCGGCATGCCAAGGAAT 58.512 45.000 34.93 15.54 35.37 3.01
580 586 2.357034 GCCAACCGCGAGTGAAGA 60.357 61.111 8.23 0.00 0.00 2.87
581 587 1.959226 GCCAACCGCGAGTGAAGAA 60.959 57.895 8.23 0.00 0.00 2.52
582 588 1.901650 GCCAACCGCGAGTGAAGAAG 61.902 60.000 8.23 0.00 0.00 2.85
584 590 0.508641 CAACCGCGAGTGAAGAAGTG 59.491 55.000 8.23 0.00 0.00 3.16
586 592 1.373497 CCGCGAGTGAAGAAGTGCT 60.373 57.895 8.23 0.00 0.00 4.40
596 621 4.100189 AGTGAAGAAGTGCTACTTGTCAGT 59.900 41.667 6.31 8.92 38.80 3.41
620 645 2.434359 CCCGCGTGGAACCTTCTC 60.434 66.667 18.79 0.00 37.49 2.87
622 647 2.434359 CGCGTGGAACCTTCTCCC 60.434 66.667 0.00 0.00 34.22 4.30
623 648 2.046217 GCGTGGAACCTTCTCCCC 60.046 66.667 0.00 0.00 34.22 4.81
742 779 0.817634 CCGGGCTCGCAATAAATGGA 60.818 55.000 0.00 0.00 34.56 3.41
778 816 3.119096 GCTTTGACCGTCTCGCCC 61.119 66.667 0.00 0.00 0.00 6.13
789 827 0.462225 GTCTCGCCCCTTTTAGCTCC 60.462 60.000 0.00 0.00 0.00 4.70
791 829 2.124278 CGCCCCTTTTAGCTCCCC 60.124 66.667 0.00 0.00 0.00 4.81
792 830 2.680370 CGCCCCTTTTAGCTCCCCT 61.680 63.158 0.00 0.00 0.00 4.79
798 840 1.120530 CTTTTAGCTCCCCTCGCCTA 58.879 55.000 0.00 0.00 0.00 3.93
925 980 1.334869 CACTTCACCTTCACCAAGCAC 59.665 52.381 0.00 0.00 0.00 4.40
933 988 1.713937 TTCACCAAGCACGCACACAG 61.714 55.000 0.00 0.00 0.00 3.66
934 989 3.585990 ACCAAGCACGCACACAGC 61.586 61.111 0.00 0.00 40.87 4.40
970 1026 2.103934 ATCGACGCAGAGCAGAGC 59.896 61.111 0.00 0.00 0.00 4.09
979 1035 2.511145 GAGCAGAGCAGCGAAGGG 60.511 66.667 0.00 0.00 40.15 3.95
1390 1465 2.829458 AGAGCTACGCCGACCTCC 60.829 66.667 0.00 0.00 0.00 4.30
1410 1485 3.083997 GCCATGGTCTCCTCCCGT 61.084 66.667 14.67 0.00 0.00 5.28
1725 1838 1.427020 GCGCCTCAAGAGCATGAAC 59.573 57.895 0.00 0.00 0.00 3.18
1871 1984 9.287373 TGACAATAATAAACCGGACTAAACTTT 57.713 29.630 9.46 0.00 0.00 2.66
1881 1994 7.255491 ACCGGACTAAACTTTTAAGAAGTTG 57.745 36.000 9.46 7.35 40.10 3.16
1908 2021 4.887748 AGATACAACAGTTGAGTCACCTG 58.112 43.478 20.56 15.53 0.00 4.00
1977 2090 7.806487 ACATCAACGATATACATTACCAGTACG 59.194 37.037 0.00 0.00 0.00 3.67
2077 2195 7.322664 ACTGCAATATGTTTTAAATCCTGTGG 58.677 34.615 0.00 0.00 0.00 4.17
2166 2287 8.237811 AGTATACCATAAAATTGCTGAAAGGG 57.762 34.615 0.00 0.00 0.00 3.95
2182 2303 6.870439 GCTGAAAGGGCATATTAATTCATTCC 59.130 38.462 0.00 0.00 0.00 3.01
2192 2326 8.349983 GCATATTAATTCATTCCACCGTTTACT 58.650 33.333 0.00 0.00 0.00 2.24
2201 2335 7.162761 TCATTCCACCGTTTACTCTTTTCATA 58.837 34.615 0.00 0.00 0.00 2.15
2232 2371 7.647907 TGAAACTCGGTCTTTTCTAATACAC 57.352 36.000 0.00 0.00 33.61 2.90
2349 2492 6.127225 CCCTCTGACTTCTGAAGACATCATTA 60.127 42.308 23.36 7.64 37.44 1.90
2371 2519 2.736670 ACATATCCTTTGCCAGGTCC 57.263 50.000 0.00 0.00 44.37 4.46
2389 2537 4.821805 AGGTCCCATGTTATAAAATCTGCG 59.178 41.667 0.00 0.00 0.00 5.18
2405 2553 2.677228 CGGGGCCAATCCTTGTCT 59.323 61.111 4.39 0.00 34.39 3.41
2414 2562 6.071320 GGGCCAATCCTTGTCTAATTAATCT 58.929 40.000 4.39 0.00 34.39 2.40
2434 2582 1.002366 GCATCCGCTGTTACTGTCAG 58.998 55.000 0.00 0.00 36.18 3.51
2458 2606 9.534565 CAGACTAAATAAATTCTGCAGCTACTA 57.465 33.333 9.47 0.00 29.71 1.82
2470 2620 6.516718 TCTGCAGCTACTATTAGGTCAATTC 58.483 40.000 9.47 0.00 33.58 2.17
2474 2624 7.829211 TGCAGCTACTATTAGGTCAATTCTTTT 59.171 33.333 0.00 0.00 33.58 2.27
2516 2670 8.506168 TCATGCCCTTTTTAAGTAGTAATCAG 57.494 34.615 0.00 0.00 0.00 2.90
2563 2717 4.260907 CCCAATCTGAATAATGCAGTGTCG 60.261 45.833 0.00 0.00 34.98 4.35
2614 2768 6.996282 TGCATGATTGATCAGTCTGATGTTAT 59.004 34.615 20.20 9.79 37.20 1.89
2615 2769 8.152246 TGCATGATTGATCAGTCTGATGTTATA 58.848 33.333 20.20 4.39 37.20 0.98
2616 2770 8.441608 GCATGATTGATCAGTCTGATGTTATAC 58.558 37.037 20.20 5.15 37.20 1.47
2673 2828 0.880278 GCTGCTTTCCTCACGTGTCA 60.880 55.000 16.51 0.00 0.00 3.58
2691 2846 2.874701 GTCATATTCACAGATTGCGGCT 59.125 45.455 0.00 0.00 0.00 5.52
2824 2979 3.631144 CACGTGCAAAATGTGTTCTGAT 58.369 40.909 0.82 0.00 40.39 2.90
2825 2980 3.665409 CACGTGCAAAATGTGTTCTGATC 59.335 43.478 0.82 0.00 40.39 2.92
2924 3448 4.564782 TGATGGAGCAAGTGAAGATCTT 57.435 40.909 7.95 7.95 0.00 2.40
2939 3463 0.333993 ATCTTCACATGCCCTTGCCT 59.666 50.000 0.00 0.00 36.33 4.75
2944 3468 2.438254 CATGCCCTTGCCTGCGTA 60.438 61.111 0.00 0.00 36.33 4.42
2958 3487 1.000506 CTGCGTACTGGTGGTTGTACT 59.999 52.381 0.00 0.00 37.47 2.73
2959 3488 1.000060 TGCGTACTGGTGGTTGTACTC 60.000 52.381 0.00 0.00 37.47 2.59
2960 3489 1.271656 GCGTACTGGTGGTTGTACTCT 59.728 52.381 0.00 0.00 37.47 3.24
2962 3491 2.413765 CGTACTGGTGGTTGTACTCTCG 60.414 54.545 0.00 0.00 37.47 4.04
2963 3492 1.991121 ACTGGTGGTTGTACTCTCGA 58.009 50.000 0.00 0.00 0.00 4.04
2977 3506 0.675837 TCTCGATCGACCCTCGTGTT 60.676 55.000 15.15 0.00 41.35 3.32
2979 3509 1.399440 CTCGATCGACCCTCGTGTTTA 59.601 52.381 15.15 0.00 41.35 2.01
2990 3520 2.165845 CCTCGTGTTTAGTCCTAGTGGG 59.834 54.545 0.00 0.00 0.00 4.61
2991 3521 3.087031 CTCGTGTTTAGTCCTAGTGGGA 58.913 50.000 0.00 0.00 42.77 4.37
3039 3569 3.883830 AGCTCTTCAGATGTGTAGGTG 57.116 47.619 0.00 0.00 0.00 4.00
3072 3602 4.657969 ACTTGGAATCAAATGGGTTGGAAA 59.342 37.500 0.00 0.00 37.85 3.13
3190 3720 1.589803 AACGTTTGGAAGAAGACGGG 58.410 50.000 0.00 0.00 39.63 5.28
3227 3761 5.464168 GTTGCTGAGACTGTAAATTTGCAT 58.536 37.500 9.51 0.73 0.00 3.96
3310 3853 6.739112 AGCAACCTTTTCACTAAAATCTCAC 58.261 36.000 0.00 0.00 34.18 3.51
3383 3926 1.133199 ACCTGGGAACATTGCAAGGAA 60.133 47.619 19.41 0.00 41.94 3.36
3406 3950 7.170320 GGAACTCAACTATTCTCGTGTTTGTAA 59.830 37.037 0.00 0.00 0.00 2.41
3407 3951 8.603242 AACTCAACTATTCTCGTGTTTGTAAT 57.397 30.769 0.00 0.00 0.00 1.89
3507 4051 7.116948 CGCATCCATATCGAGTCTAAAATTTCT 59.883 37.037 0.00 0.00 0.00 2.52
3550 5488 4.523083 TGAGTACCATTATGCCCAAAGAC 58.477 43.478 0.00 0.00 0.00 3.01
3674 5615 2.580815 CCTCATGTCGCTCCTGCA 59.419 61.111 0.00 0.00 39.64 4.41
3677 5618 0.390866 CTCATGTCGCTCCTGCAAGT 60.391 55.000 0.00 0.00 39.64 3.16
3685 5626 2.525629 TCCTGCAAGTGACGGGGA 60.526 61.111 0.00 0.00 34.06 4.81
3723 5665 2.285743 GCCCAGTCCCCTCTCCTT 60.286 66.667 0.00 0.00 0.00 3.36
3812 5754 0.318762 GTGTTCTCTCCTCCGCACTT 59.681 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.665916 CGCGGGTAGGATCTGCATG 60.666 63.158 0.00 0.00 36.37 4.06
1 2 1.188219 ATCGCGGGTAGGATCTGCAT 61.188 55.000 6.13 0.00 36.37 3.96
2 3 1.832608 ATCGCGGGTAGGATCTGCA 60.833 57.895 6.13 0.00 36.37 4.41
3 4 1.373497 CATCGCGGGTAGGATCTGC 60.373 63.158 6.13 0.00 0.00 4.26
4 5 0.242286 CTCATCGCGGGTAGGATCTG 59.758 60.000 6.13 0.00 0.00 2.90
5 6 0.178987 ACTCATCGCGGGTAGGATCT 60.179 55.000 6.13 0.00 0.00 2.75
6 7 1.531423 TACTCATCGCGGGTAGGATC 58.469 55.000 6.13 0.00 0.00 3.36
7 8 2.093106 GATACTCATCGCGGGTAGGAT 58.907 52.381 6.13 2.77 0.00 3.24
8 9 1.531423 GATACTCATCGCGGGTAGGA 58.469 55.000 6.13 0.00 0.00 2.94
9 10 0.526662 GGATACTCATCGCGGGTAGG 59.473 60.000 6.13 0.00 31.33 3.18
10 11 0.168348 CGGATACTCATCGCGGGTAG 59.832 60.000 6.13 3.41 31.33 3.18
11 12 1.239296 CCGGATACTCATCGCGGGTA 61.239 60.000 6.13 5.47 39.43 3.69
12 13 2.561956 CCGGATACTCATCGCGGGT 61.562 63.158 6.13 3.16 39.43 5.28
13 14 1.595993 ATCCGGATACTCATCGCGGG 61.596 60.000 17.43 0.00 41.52 6.13
14 15 0.243907 AATCCGGATACTCATCGCGG 59.756 55.000 19.48 0.00 42.06 6.46
15 16 1.340658 CAATCCGGATACTCATCGCG 58.659 55.000 19.48 0.00 31.33 5.87
16 17 1.272490 TCCAATCCGGATACTCATCGC 59.728 52.381 19.48 0.00 39.64 4.58
17 18 3.660501 TTCCAATCCGGATACTCATCG 57.339 47.619 19.48 0.00 45.80 3.84
18 19 4.508662 GGATTCCAATCCGGATACTCATC 58.491 47.826 19.48 16.09 45.80 2.92
19 20 4.559862 GGATTCCAATCCGGATACTCAT 57.440 45.455 19.48 8.09 45.80 2.90
33 34 2.091610 TGGAGTGTGTTTTGGGATTCCA 60.092 45.455 4.80 0.00 42.25 3.53
34 35 2.593026 TGGAGTGTGTTTTGGGATTCC 58.407 47.619 0.00 0.00 0.00 3.01
35 36 4.871933 AATGGAGTGTGTTTTGGGATTC 57.128 40.909 0.00 0.00 0.00 2.52
36 37 5.779771 ACATAATGGAGTGTGTTTTGGGATT 59.220 36.000 0.00 0.00 0.00 3.01
37 38 5.185635 CACATAATGGAGTGTGTTTTGGGAT 59.814 40.000 0.00 0.00 40.54 3.85
38 39 4.522405 CACATAATGGAGTGTGTTTTGGGA 59.478 41.667 0.00 0.00 40.54 4.37
39 40 4.808558 CACATAATGGAGTGTGTTTTGGG 58.191 43.478 0.00 0.00 40.54 4.12
52 53 6.151648 GTCATGTTGGATATCCCACATAATGG 59.848 42.308 30.96 21.95 46.79 3.16
53 54 6.944290 AGTCATGTTGGATATCCCACATAATG 59.056 38.462 30.96 23.55 46.79 1.90
54 55 7.095183 AGTCATGTTGGATATCCCACATAAT 57.905 36.000 30.96 20.51 46.79 1.28
55 56 6.514012 AGTCATGTTGGATATCCCACATAA 57.486 37.500 30.96 20.56 46.79 1.90
56 57 7.237471 ACATAGTCATGTTGGATATCCCACATA 59.763 37.037 30.96 20.60 46.79 2.29
58 59 5.369404 ACATAGTCATGTTGGATATCCCACA 59.631 40.000 26.16 26.16 42.98 4.17
59 60 5.702670 CACATAGTCATGTTGGATATCCCAC 59.297 44.000 19.34 18.21 42.98 4.61
60 61 5.369404 ACACATAGTCATGTTGGATATCCCA 59.631 40.000 19.34 11.01 42.98 4.37
61 62 5.869579 ACACATAGTCATGTTGGATATCCC 58.130 41.667 19.34 5.19 42.98 3.85
70 71 4.191544 CGGGATCAACACATAGTCATGTT 58.808 43.478 0.00 0.00 42.98 2.71
71 72 3.197766 ACGGGATCAACACATAGTCATGT 59.802 43.478 0.00 0.00 46.58 3.21
72 73 3.797039 ACGGGATCAACACATAGTCATG 58.203 45.455 0.00 0.00 38.21 3.07
73 74 5.304357 TCATACGGGATCAACACATAGTCAT 59.696 40.000 0.00 0.00 0.00 3.06
74 75 4.647399 TCATACGGGATCAACACATAGTCA 59.353 41.667 0.00 0.00 0.00 3.41
75 76 5.009710 TCTCATACGGGATCAACACATAGTC 59.990 44.000 0.00 0.00 0.00 2.59
76 77 4.893524 TCTCATACGGGATCAACACATAGT 59.106 41.667 0.00 0.00 0.00 2.12
77 78 5.453567 TCTCATACGGGATCAACACATAG 57.546 43.478 0.00 0.00 0.00 2.23
78 79 5.221441 CCTTCTCATACGGGATCAACACATA 60.221 44.000 0.00 0.00 0.00 2.29
79 80 4.443457 CCTTCTCATACGGGATCAACACAT 60.443 45.833 0.00 0.00 0.00 3.21
80 81 3.118775 CCTTCTCATACGGGATCAACACA 60.119 47.826 0.00 0.00 0.00 3.72
81 82 3.132289 TCCTTCTCATACGGGATCAACAC 59.868 47.826 0.00 0.00 0.00 3.32
82 83 3.371034 TCCTTCTCATACGGGATCAACA 58.629 45.455 0.00 0.00 0.00 3.33
83 84 3.243907 CCTCCTTCTCATACGGGATCAAC 60.244 52.174 0.00 0.00 0.00 3.18
84 85 2.965831 CCTCCTTCTCATACGGGATCAA 59.034 50.000 0.00 0.00 0.00 2.57
85 86 2.177016 TCCTCCTTCTCATACGGGATCA 59.823 50.000 0.00 0.00 0.00 2.92
86 87 2.823154 CTCCTCCTTCTCATACGGGATC 59.177 54.545 0.00 0.00 0.00 3.36
87 88 2.178106 ACTCCTCCTTCTCATACGGGAT 59.822 50.000 0.00 0.00 0.00 3.85
88 89 1.569548 ACTCCTCCTTCTCATACGGGA 59.430 52.381 0.00 0.00 0.00 5.14
89 90 2.074729 ACTCCTCCTTCTCATACGGG 57.925 55.000 0.00 0.00 0.00 5.28
90 91 3.318557 GGTTACTCCTCCTTCTCATACGG 59.681 52.174 0.00 0.00 0.00 4.02
91 92 4.208746 AGGTTACTCCTCCTTCTCATACG 58.791 47.826 0.00 0.00 44.42 3.06
103 104 4.802314 GCTGTATGAGCGAGGTTACTCCT 61.802 52.174 0.00 0.00 43.52 3.69
104 105 2.544069 GCTGTATGAGCGAGGTTACTCC 60.544 54.545 0.00 0.00 40.77 3.85
105 106 2.733517 GCTGTATGAGCGAGGTTACTC 58.266 52.381 0.00 0.00 38.15 2.59
106 107 2.873133 GCTGTATGAGCGAGGTTACT 57.127 50.000 0.00 0.00 38.15 2.24
116 117 2.103094 TCCCCGATTTGAGCTGTATGAG 59.897 50.000 0.00 0.00 0.00 2.90
117 118 2.115427 TCCCCGATTTGAGCTGTATGA 58.885 47.619 0.00 0.00 0.00 2.15
118 119 2.213499 GTCCCCGATTTGAGCTGTATG 58.787 52.381 0.00 0.00 0.00 2.39
119 120 1.141053 GGTCCCCGATTTGAGCTGTAT 59.859 52.381 0.00 0.00 0.00 2.29
120 121 0.539986 GGTCCCCGATTTGAGCTGTA 59.460 55.000 0.00 0.00 0.00 2.74
121 122 1.299976 GGTCCCCGATTTGAGCTGT 59.700 57.895 0.00 0.00 0.00 4.40
122 123 1.026718 GTGGTCCCCGATTTGAGCTG 61.027 60.000 0.00 0.00 0.00 4.24
123 124 1.299976 GTGGTCCCCGATTTGAGCT 59.700 57.895 0.00 0.00 0.00 4.09
124 125 0.394352 ATGTGGTCCCCGATTTGAGC 60.394 55.000 0.00 0.00 0.00 4.26
125 126 1.382522 CATGTGGTCCCCGATTTGAG 58.617 55.000 0.00 0.00 0.00 3.02
126 127 0.679640 GCATGTGGTCCCCGATTTGA 60.680 55.000 0.00 0.00 0.00 2.69
127 128 0.680921 AGCATGTGGTCCCCGATTTG 60.681 55.000 0.00 0.00 0.00 2.32
128 129 0.039618 AAGCATGTGGTCCCCGATTT 59.960 50.000 0.00 0.00 0.00 2.17
129 130 0.394352 GAAGCATGTGGTCCCCGATT 60.394 55.000 0.00 0.00 0.00 3.34
130 131 1.224592 GAAGCATGTGGTCCCCGAT 59.775 57.895 0.00 0.00 0.00 4.18
131 132 1.561769 ATGAAGCATGTGGTCCCCGA 61.562 55.000 0.00 0.00 0.00 5.14
132 133 0.680921 AATGAAGCATGTGGTCCCCG 60.681 55.000 0.00 0.00 0.00 5.73
133 134 1.478105 GAAATGAAGCATGTGGTCCCC 59.522 52.381 0.00 0.00 0.00 4.81
134 135 2.165030 CTGAAATGAAGCATGTGGTCCC 59.835 50.000 0.00 0.00 0.00 4.46
135 136 3.084039 TCTGAAATGAAGCATGTGGTCC 58.916 45.455 0.00 0.00 0.00 4.46
136 137 3.425359 CGTCTGAAATGAAGCATGTGGTC 60.425 47.826 0.00 0.00 0.00 4.02
137 138 2.485426 CGTCTGAAATGAAGCATGTGGT 59.515 45.455 0.00 0.00 0.00 4.16
138 139 2.743664 TCGTCTGAAATGAAGCATGTGG 59.256 45.455 0.00 0.00 0.00 4.17
139 140 3.187022 TGTCGTCTGAAATGAAGCATGTG 59.813 43.478 0.00 0.00 0.00 3.21
140 141 3.402110 TGTCGTCTGAAATGAAGCATGT 58.598 40.909 0.00 0.00 0.00 3.21
141 142 4.153986 GTTGTCGTCTGAAATGAAGCATG 58.846 43.478 0.00 0.00 0.00 4.06
142 143 3.120546 CGTTGTCGTCTGAAATGAAGCAT 60.121 43.478 0.00 0.00 0.00 3.79
143 144 2.220824 CGTTGTCGTCTGAAATGAAGCA 59.779 45.455 0.00 0.00 0.00 3.91
144 145 2.475111 TCGTTGTCGTCTGAAATGAAGC 59.525 45.455 0.00 0.00 38.33 3.86
145 146 3.420544 CGTCGTTGTCGTCTGAAATGAAG 60.421 47.826 0.00 0.00 38.33 3.02
146 147 2.469886 CGTCGTTGTCGTCTGAAATGAA 59.530 45.455 0.00 0.00 38.33 2.57
147 148 2.048498 CGTCGTTGTCGTCTGAAATGA 58.952 47.619 0.00 0.00 38.33 2.57
148 149 2.048498 TCGTCGTTGTCGTCTGAAATG 58.952 47.619 0.00 0.00 38.33 2.32
149 150 2.049228 GTCGTCGTTGTCGTCTGAAAT 58.951 47.619 0.00 0.00 38.33 2.17
150 151 1.469917 GTCGTCGTTGTCGTCTGAAA 58.530 50.000 0.00 0.00 38.33 2.69
151 152 0.655337 CGTCGTCGTTGTCGTCTGAA 60.655 55.000 0.00 0.00 38.33 3.02
152 153 1.083209 CGTCGTCGTTGTCGTCTGA 60.083 57.895 0.00 0.00 38.33 3.27
153 154 2.073220 CCGTCGTCGTTGTCGTCTG 61.073 63.158 0.71 0.00 38.33 3.51
154 155 2.250485 CCGTCGTCGTTGTCGTCT 59.750 61.111 0.71 0.00 38.33 4.18
155 156 3.456039 GCCGTCGTCGTTGTCGTC 61.456 66.667 0.71 0.00 38.33 4.20
156 157 3.868951 GAGCCGTCGTCGTTGTCGT 62.869 63.158 0.71 0.00 38.33 4.34
157 158 3.164011 GAGCCGTCGTCGTTGTCG 61.164 66.667 0.71 0.00 38.55 4.35
158 159 3.164011 CGAGCCGTCGTCGTTGTC 61.164 66.667 0.71 0.00 41.57 3.18
159 160 3.185082 TTCGAGCCGTCGTCGTTGT 62.185 57.895 0.71 0.00 46.85 3.32
160 161 2.427905 TTCGAGCCGTCGTCGTTG 60.428 61.111 0.71 0.00 46.85 4.10
161 162 2.428071 GTTCGAGCCGTCGTCGTT 60.428 61.111 0.71 0.00 46.85 3.85
162 163 2.666715 TTTGTTCGAGCCGTCGTCGT 62.667 55.000 0.71 0.00 46.85 4.34
163 164 1.930816 CTTTGTTCGAGCCGTCGTCG 61.931 60.000 0.00 0.00 46.85 5.12
164 165 0.938168 ACTTTGTTCGAGCCGTCGTC 60.938 55.000 0.00 0.00 46.85 4.20
165 166 0.529119 AACTTTGTTCGAGCCGTCGT 60.529 50.000 0.00 0.00 46.85 4.34
167 168 0.384353 GCAACTTTGTTCGAGCCGTC 60.384 55.000 0.00 0.00 0.00 4.79
168 169 1.092921 TGCAACTTTGTTCGAGCCGT 61.093 50.000 0.00 0.00 0.00 5.68
169 170 0.384725 CTGCAACTTTGTTCGAGCCG 60.385 55.000 0.00 0.00 0.00 5.52
170 171 0.944386 TCTGCAACTTTGTTCGAGCC 59.056 50.000 0.00 0.00 0.00 4.70
171 172 2.578495 CATCTGCAACTTTGTTCGAGC 58.422 47.619 0.00 0.00 0.00 5.03
172 173 2.549754 ACCATCTGCAACTTTGTTCGAG 59.450 45.455 0.00 0.00 0.00 4.04
173 174 2.290367 CACCATCTGCAACTTTGTTCGA 59.710 45.455 0.00 0.00 0.00 3.71
174 175 2.290367 TCACCATCTGCAACTTTGTTCG 59.710 45.455 0.00 0.00 0.00 3.95
175 176 3.066621 TGTCACCATCTGCAACTTTGTTC 59.933 43.478 0.00 0.00 0.00 3.18
176 177 3.023119 TGTCACCATCTGCAACTTTGTT 58.977 40.909 0.00 0.00 0.00 2.83
177 178 2.653726 TGTCACCATCTGCAACTTTGT 58.346 42.857 0.00 0.00 0.00 2.83
178 179 3.713858 TTGTCACCATCTGCAACTTTG 57.286 42.857 0.00 0.00 0.00 2.77
179 180 3.068590 CCTTTGTCACCATCTGCAACTTT 59.931 43.478 0.00 0.00 0.00 2.66
180 181 2.624838 CCTTTGTCACCATCTGCAACTT 59.375 45.455 0.00 0.00 0.00 2.66
181 182 2.233271 CCTTTGTCACCATCTGCAACT 58.767 47.619 0.00 0.00 0.00 3.16
182 183 1.956477 ACCTTTGTCACCATCTGCAAC 59.044 47.619 0.00 0.00 0.00 4.17
183 184 2.363306 ACCTTTGTCACCATCTGCAA 57.637 45.000 0.00 0.00 0.00 4.08
184 185 3.609853 GATACCTTTGTCACCATCTGCA 58.390 45.455 0.00 0.00 0.00 4.41
185 186 2.609459 CGATACCTTTGTCACCATCTGC 59.391 50.000 0.00 0.00 0.00 4.26
186 187 3.198068 CCGATACCTTTGTCACCATCTG 58.802 50.000 0.00 0.00 0.00 2.90
187 188 2.420129 GCCGATACCTTTGTCACCATCT 60.420 50.000 0.00 0.00 0.00 2.90
188 189 1.940613 GCCGATACCTTTGTCACCATC 59.059 52.381 0.00 0.00 0.00 3.51
189 190 1.742411 CGCCGATACCTTTGTCACCAT 60.742 52.381 0.00 0.00 0.00 3.55
190 191 0.390603 CGCCGATACCTTTGTCACCA 60.391 55.000 0.00 0.00 0.00 4.17
191 192 0.108520 TCGCCGATACCTTTGTCACC 60.109 55.000 0.00 0.00 0.00 4.02
192 193 0.997196 GTCGCCGATACCTTTGTCAC 59.003 55.000 0.00 0.00 0.00 3.67
193 194 0.108520 GGTCGCCGATACCTTTGTCA 60.109 55.000 0.00 0.00 33.97 3.58
194 195 0.175073 AGGTCGCCGATACCTTTGTC 59.825 55.000 0.00 0.00 45.26 3.18
195 196 2.283824 AGGTCGCCGATACCTTTGT 58.716 52.632 0.00 0.00 45.26 2.83
200 201 2.416260 GGTGAGGTCGCCGATACC 59.584 66.667 0.00 0.00 36.72 2.73
206 207 4.530857 CCATCCGGTGAGGTCGCC 62.531 72.222 0.00 0.00 42.91 5.54
207 208 2.701163 GATCCATCCGGTGAGGTCGC 62.701 65.000 0.00 0.00 41.99 5.19
208 209 1.364171 GATCCATCCGGTGAGGTCG 59.636 63.158 0.00 0.00 41.99 4.79
209 210 1.749033 GGATCCATCCGGTGAGGTC 59.251 63.158 6.95 0.00 41.99 3.85
210 211 3.971894 GGATCCATCCGGTGAGGT 58.028 61.111 6.95 0.00 41.99 3.85
218 219 9.783451 CAGCTAAAACTAGGTGAGGATCCATCC 62.783 48.148 15.82 12.70 45.52 3.51
219 220 5.071115 AGCTAAAACTAGGTGAGGATCCATC 59.929 44.000 15.82 9.26 0.00 3.51
220 221 4.971924 AGCTAAAACTAGGTGAGGATCCAT 59.028 41.667 15.82 0.00 0.00 3.41
221 222 4.162320 CAGCTAAAACTAGGTGAGGATCCA 59.838 45.833 15.82 0.00 45.52 3.41
222 223 4.443598 CCAGCTAAAACTAGGTGAGGATCC 60.444 50.000 2.48 2.48 45.52 3.36
223 224 4.406003 TCCAGCTAAAACTAGGTGAGGATC 59.594 45.833 11.84 0.00 45.52 3.36
224 225 4.362677 TCCAGCTAAAACTAGGTGAGGAT 58.637 43.478 11.84 0.00 45.52 3.24
225 226 3.786553 TCCAGCTAAAACTAGGTGAGGA 58.213 45.455 11.84 0.82 45.52 3.71
226 227 4.553330 TTCCAGCTAAAACTAGGTGAGG 57.447 45.455 11.84 0.00 45.52 3.86
227 228 8.738645 ATTAATTCCAGCTAAAACTAGGTGAG 57.261 34.615 11.84 4.04 45.52 3.51
228 229 9.528489 AAATTAATTCCAGCTAAAACTAGGTGA 57.472 29.630 11.84 0.00 45.52 4.02
259 260 8.766151 GGCGAAATTTAAACAAATTCAACCTAA 58.234 29.630 0.00 0.00 31.66 2.69
260 261 7.385478 GGGCGAAATTTAAACAAATTCAACCTA 59.615 33.333 0.00 0.00 31.66 3.08
261 262 6.203915 GGGCGAAATTTAAACAAATTCAACCT 59.796 34.615 0.00 0.00 31.66 3.50
262 263 6.367421 GGGCGAAATTTAAACAAATTCAACC 58.633 36.000 0.00 0.00 31.66 3.77
263 264 6.068300 CGGGCGAAATTTAAACAAATTCAAC 58.932 36.000 0.00 0.00 31.66 3.18
264 265 5.753921 ACGGGCGAAATTTAAACAAATTCAA 59.246 32.000 0.00 0.00 31.66 2.69
265 266 5.290386 ACGGGCGAAATTTAAACAAATTCA 58.710 33.333 0.00 0.00 31.66 2.57
266 267 5.832568 ACGGGCGAAATTTAAACAAATTC 57.167 34.783 0.00 0.00 31.66 2.17
267 268 6.423042 CAAACGGGCGAAATTTAAACAAATT 58.577 32.000 0.00 0.00 34.09 1.82
268 269 5.050023 CCAAACGGGCGAAATTTAAACAAAT 60.050 36.000 0.00 0.00 0.00 2.32
269 270 4.270325 CCAAACGGGCGAAATTTAAACAAA 59.730 37.500 0.00 0.00 0.00 2.83
270 271 3.802685 CCAAACGGGCGAAATTTAAACAA 59.197 39.130 0.00 0.00 0.00 2.83
271 272 3.181478 ACCAAACGGGCGAAATTTAAACA 60.181 39.130 0.00 0.00 42.05 2.83
272 273 3.382855 ACCAAACGGGCGAAATTTAAAC 58.617 40.909 0.00 0.00 42.05 2.01
273 274 3.729862 ACCAAACGGGCGAAATTTAAA 57.270 38.095 0.00 0.00 42.05 1.52
274 275 3.381949 CAACCAAACGGGCGAAATTTAA 58.618 40.909 0.00 0.00 42.05 1.52
275 276 2.862921 GCAACCAAACGGGCGAAATTTA 60.863 45.455 0.00 0.00 42.05 1.40
276 277 1.859383 CAACCAAACGGGCGAAATTT 58.141 45.000 0.00 0.00 42.05 1.82
277 278 0.598942 GCAACCAAACGGGCGAAATT 60.599 50.000 0.00 0.00 42.05 1.82
278 279 1.006688 GCAACCAAACGGGCGAAAT 60.007 52.632 0.00 0.00 42.05 2.17
279 280 1.945354 TTGCAACCAAACGGGCGAAA 61.945 50.000 0.00 0.00 42.05 3.46
280 281 1.739338 ATTGCAACCAAACGGGCGAA 61.739 50.000 0.00 0.00 42.05 4.70
281 282 0.889638 TATTGCAACCAAACGGGCGA 60.890 50.000 0.00 0.00 42.05 5.54
282 283 0.172352 ATATTGCAACCAAACGGGCG 59.828 50.000 0.00 0.00 42.05 6.13
283 284 2.480587 GGTATATTGCAACCAAACGGGC 60.481 50.000 0.00 0.00 42.05 6.13
284 285 2.223386 CGGTATATTGCAACCAAACGGG 60.223 50.000 0.00 0.00 44.81 5.28
285 286 2.678836 TCGGTATATTGCAACCAAACGG 59.321 45.455 0.00 2.97 35.35 4.44
286 287 4.092816 GTTCGGTATATTGCAACCAAACG 58.907 43.478 0.00 4.42 35.35 3.60
287 288 5.305139 AGTTCGGTATATTGCAACCAAAC 57.695 39.130 0.00 0.37 33.67 2.93
288 289 5.968528 AAGTTCGGTATATTGCAACCAAA 57.031 34.783 0.00 0.00 35.35 3.28
289 290 5.241949 ACAAAGTTCGGTATATTGCAACCAA 59.758 36.000 0.00 0.00 35.35 3.67
290 291 4.762765 ACAAAGTTCGGTATATTGCAACCA 59.237 37.500 0.00 0.00 35.35 3.67
291 292 5.305139 ACAAAGTTCGGTATATTGCAACC 57.695 39.130 0.00 0.00 0.00 3.77
292 293 8.730970 TTAAACAAAGTTCGGTATATTGCAAC 57.269 30.769 0.00 0.00 0.00 4.17
293 294 9.915629 ATTTAAACAAAGTTCGGTATATTGCAA 57.084 25.926 0.00 0.00 0.00 4.08
294 295 9.915629 AATTTAAACAAAGTTCGGTATATTGCA 57.084 25.926 0.00 0.00 0.00 4.08
300 301 7.966204 CGATGGAATTTAAACAAAGTTCGGTAT 59.034 33.333 0.00 0.00 35.28 2.73
301 302 7.041235 ACGATGGAATTTAAACAAAGTTCGGTA 60.041 33.333 0.00 0.00 35.28 4.02
302 303 6.146898 CGATGGAATTTAAACAAAGTTCGGT 58.853 36.000 0.00 0.00 35.28 4.69
303 304 6.146898 ACGATGGAATTTAAACAAAGTTCGG 58.853 36.000 0.00 0.00 35.28 4.30
304 305 7.617533 AACGATGGAATTTAAACAAAGTTCG 57.382 32.000 0.00 0.00 35.28 3.95
305 306 9.631639 CAAAACGATGGAATTTAAACAAAGTTC 57.368 29.630 0.00 0.00 34.06 3.01
306 307 8.119845 GCAAAACGATGGAATTTAAACAAAGTT 58.880 29.630 0.00 0.00 0.00 2.66
307 308 7.494298 AGCAAAACGATGGAATTTAAACAAAGT 59.506 29.630 0.00 0.00 0.00 2.66
308 309 7.850501 AGCAAAACGATGGAATTTAAACAAAG 58.149 30.769 0.00 0.00 0.00 2.77
309 310 7.778470 AGCAAAACGATGGAATTTAAACAAA 57.222 28.000 0.00 0.00 0.00 2.83
310 311 7.778470 AAGCAAAACGATGGAATTTAAACAA 57.222 28.000 0.00 0.00 0.00 2.83
311 312 7.778470 AAAGCAAAACGATGGAATTTAAACA 57.222 28.000 0.00 0.00 0.00 2.83
312 313 9.575702 GTAAAAGCAAAACGATGGAATTTAAAC 57.424 29.630 0.00 0.00 0.00 2.01
313 314 9.535878 AGTAAAAGCAAAACGATGGAATTTAAA 57.464 25.926 0.00 0.00 0.00 1.52
314 315 9.535878 AAGTAAAAGCAAAACGATGGAATTTAA 57.464 25.926 0.00 0.00 0.00 1.52
315 316 9.187455 GAAGTAAAAGCAAAACGATGGAATTTA 57.813 29.630 0.00 0.00 0.00 1.40
316 317 7.170828 GGAAGTAAAAGCAAAACGATGGAATTT 59.829 33.333 0.00 0.00 0.00 1.82
317 318 6.645003 GGAAGTAAAAGCAAAACGATGGAATT 59.355 34.615 0.00 0.00 0.00 2.17
318 319 6.156519 GGAAGTAAAAGCAAAACGATGGAAT 58.843 36.000 0.00 0.00 0.00 3.01
319 320 5.067936 TGGAAGTAAAAGCAAAACGATGGAA 59.932 36.000 0.00 0.00 0.00 3.53
320 321 4.580995 TGGAAGTAAAAGCAAAACGATGGA 59.419 37.500 0.00 0.00 0.00 3.41
321 322 4.865776 TGGAAGTAAAAGCAAAACGATGG 58.134 39.130 0.00 0.00 0.00 3.51
322 323 6.306356 CAGATGGAAGTAAAAGCAAAACGATG 59.694 38.462 0.00 0.00 0.00 3.84
323 324 6.016276 ACAGATGGAAGTAAAAGCAAAACGAT 60.016 34.615 0.00 0.00 0.00 3.73
324 325 5.298276 ACAGATGGAAGTAAAAGCAAAACGA 59.702 36.000 0.00 0.00 0.00 3.85
325 326 5.399301 CACAGATGGAAGTAAAAGCAAAACG 59.601 40.000 0.00 0.00 0.00 3.60
326 327 6.273071 ACACAGATGGAAGTAAAAGCAAAAC 58.727 36.000 0.00 0.00 0.00 2.43
327 328 6.463995 ACACAGATGGAAGTAAAAGCAAAA 57.536 33.333 0.00 0.00 0.00 2.44
328 329 6.463995 AACACAGATGGAAGTAAAAGCAAA 57.536 33.333 0.00 0.00 0.00 3.68
329 330 6.127479 ACAAACACAGATGGAAGTAAAAGCAA 60.127 34.615 0.00 0.00 0.00 3.91
330 331 5.359576 ACAAACACAGATGGAAGTAAAAGCA 59.640 36.000 0.00 0.00 0.00 3.91
331 332 5.687285 CACAAACACAGATGGAAGTAAAAGC 59.313 40.000 0.00 0.00 0.00 3.51
332 333 5.687285 GCACAAACACAGATGGAAGTAAAAG 59.313 40.000 0.00 0.00 0.00 2.27
333 334 5.587289 GCACAAACACAGATGGAAGTAAAA 58.413 37.500 0.00 0.00 0.00 1.52
334 335 4.260990 CGCACAAACACAGATGGAAGTAAA 60.261 41.667 0.00 0.00 0.00 2.01
335 336 3.249799 CGCACAAACACAGATGGAAGTAA 59.750 43.478 0.00 0.00 0.00 2.24
336 337 2.805671 CGCACAAACACAGATGGAAGTA 59.194 45.455 0.00 0.00 0.00 2.24
337 338 1.603802 CGCACAAACACAGATGGAAGT 59.396 47.619 0.00 0.00 0.00 3.01
338 339 1.664016 GCGCACAAACACAGATGGAAG 60.664 52.381 0.30 0.00 0.00 3.46
339 340 0.310543 GCGCACAAACACAGATGGAA 59.689 50.000 0.30 0.00 0.00 3.53
340 341 1.840630 CGCGCACAAACACAGATGGA 61.841 55.000 8.75 0.00 0.00 3.41
341 342 1.440850 CGCGCACAAACACAGATGG 60.441 57.895 8.75 0.00 0.00 3.51
342 343 1.440850 CCGCGCACAAACACAGATG 60.441 57.895 8.75 0.00 0.00 2.90
343 344 1.841663 GACCGCGCACAAACACAGAT 61.842 55.000 8.75 0.00 0.00 2.90
344 345 2.512745 ACCGCGCACAAACACAGA 60.513 55.556 8.75 0.00 0.00 3.41
345 346 2.052237 GACCGCGCACAAACACAG 60.052 61.111 8.75 0.00 0.00 3.66
346 347 2.512745 AGACCGCGCACAAACACA 60.513 55.556 8.75 0.00 0.00 3.72
347 348 2.052237 CAGACCGCGCACAAACAC 60.052 61.111 8.75 0.00 0.00 3.32
348 349 1.649390 AAACAGACCGCGCACAAACA 61.649 50.000 8.75 0.00 0.00 2.83
349 350 0.524604 AAAACAGACCGCGCACAAAC 60.525 50.000 8.75 0.00 0.00 2.93
350 351 1.015109 TAAAACAGACCGCGCACAAA 58.985 45.000 8.75 0.00 0.00 2.83
351 352 1.015109 TTAAAACAGACCGCGCACAA 58.985 45.000 8.75 0.00 0.00 3.33
352 353 1.015109 TTTAAAACAGACCGCGCACA 58.985 45.000 8.75 0.00 0.00 4.57
353 354 1.976045 CATTTAAAACAGACCGCGCAC 59.024 47.619 8.75 0.00 0.00 5.34
354 355 1.068885 CCATTTAAAACAGACCGCGCA 60.069 47.619 8.75 0.00 0.00 6.09
355 356 1.068816 ACCATTTAAAACAGACCGCGC 60.069 47.619 0.00 0.00 0.00 6.86
356 357 2.977169 CAACCATTTAAAACAGACCGCG 59.023 45.455 0.00 0.00 0.00 6.46
357 358 4.226761 CTCAACCATTTAAAACAGACCGC 58.773 43.478 0.00 0.00 0.00 5.68
358 359 4.226761 GCTCAACCATTTAAAACAGACCG 58.773 43.478 0.00 0.00 0.00 4.79
359 360 4.556233 GGCTCAACCATTTAAAACAGACC 58.444 43.478 0.00 0.00 38.86 3.85
360 361 4.226761 CGGCTCAACCATTTAAAACAGAC 58.773 43.478 0.00 0.00 39.03 3.51
361 362 3.305064 GCGGCTCAACCATTTAAAACAGA 60.305 43.478 0.00 0.00 39.03 3.41
362 363 2.986479 GCGGCTCAACCATTTAAAACAG 59.014 45.455 0.00 0.00 39.03 3.16
363 364 2.605823 CGCGGCTCAACCATTTAAAACA 60.606 45.455 0.00 0.00 39.03 2.83
364 365 1.982913 CGCGGCTCAACCATTTAAAAC 59.017 47.619 0.00 0.00 39.03 2.43
365 366 1.609555 ACGCGGCTCAACCATTTAAAA 59.390 42.857 12.47 0.00 39.03 1.52
366 367 1.240256 ACGCGGCTCAACCATTTAAA 58.760 45.000 12.47 0.00 39.03 1.52
367 368 1.068885 CAACGCGGCTCAACCATTTAA 60.069 47.619 12.47 0.00 39.03 1.52
368 369 0.519519 CAACGCGGCTCAACCATTTA 59.480 50.000 12.47 0.00 39.03 1.40
369 370 1.285641 CAACGCGGCTCAACCATTT 59.714 52.632 12.47 0.00 39.03 2.32
370 371 2.625823 CCAACGCGGCTCAACCATT 61.626 57.895 12.47 0.00 39.03 3.16
371 372 2.819984 ATCCAACGCGGCTCAACCAT 62.820 55.000 12.47 0.00 39.03 3.55
372 373 3.545124 ATCCAACGCGGCTCAACCA 62.545 57.895 12.47 0.00 39.03 3.67
373 374 2.746277 ATCCAACGCGGCTCAACC 60.746 61.111 12.47 0.00 33.14 3.77
374 375 2.032634 TCATCCAACGCGGCTCAAC 61.033 57.895 12.47 0.00 33.14 3.18
375 376 2.032634 GTCATCCAACGCGGCTCAA 61.033 57.895 12.47 0.00 33.14 3.02
376 377 2.434185 GTCATCCAACGCGGCTCA 60.434 61.111 12.47 0.00 33.14 4.26
377 378 1.696832 GAAGTCATCCAACGCGGCTC 61.697 60.000 12.47 0.00 33.14 4.70
378 379 1.741770 GAAGTCATCCAACGCGGCT 60.742 57.895 12.47 0.00 33.14 5.52
379 380 1.970917 CTGAAGTCATCCAACGCGGC 61.971 60.000 12.47 0.00 33.14 6.53
380 381 0.670546 ACTGAAGTCATCCAACGCGG 60.671 55.000 12.47 0.00 0.00 6.46
381 382 1.920574 CTACTGAAGTCATCCAACGCG 59.079 52.381 3.53 3.53 0.00 6.01
382 383 1.661112 GCTACTGAAGTCATCCAACGC 59.339 52.381 0.00 0.00 0.00 4.84
383 384 3.182967 GAGCTACTGAAGTCATCCAACG 58.817 50.000 0.00 0.00 0.00 4.10
384 385 3.182967 CGAGCTACTGAAGTCATCCAAC 58.817 50.000 0.00 0.00 0.00 3.77
385 386 2.166459 CCGAGCTACTGAAGTCATCCAA 59.834 50.000 0.00 0.00 0.00 3.53
386 387 1.751351 CCGAGCTACTGAAGTCATCCA 59.249 52.381 0.00 0.00 0.00 3.41
387 388 1.751924 ACCGAGCTACTGAAGTCATCC 59.248 52.381 0.00 0.00 0.00 3.51
388 389 3.182967 CAACCGAGCTACTGAAGTCATC 58.817 50.000 0.00 0.00 0.00 2.92
389 390 2.093973 CCAACCGAGCTACTGAAGTCAT 60.094 50.000 0.00 0.00 0.00 3.06
390 391 1.272490 CCAACCGAGCTACTGAAGTCA 59.728 52.381 0.00 0.00 0.00 3.41
391 392 1.544691 TCCAACCGAGCTACTGAAGTC 59.455 52.381 0.00 0.00 0.00 3.01
392 393 1.629043 TCCAACCGAGCTACTGAAGT 58.371 50.000 0.00 0.00 0.00 3.01
393 394 2.093973 ACATCCAACCGAGCTACTGAAG 60.094 50.000 0.00 0.00 0.00 3.02
394 395 1.899814 ACATCCAACCGAGCTACTGAA 59.100 47.619 0.00 0.00 0.00 3.02
395 396 1.476891 GACATCCAACCGAGCTACTGA 59.523 52.381 0.00 0.00 0.00 3.41
396 397 1.471676 GGACATCCAACCGAGCTACTG 60.472 57.143 0.00 0.00 35.64 2.74
397 398 0.824759 GGACATCCAACCGAGCTACT 59.175 55.000 0.00 0.00 35.64 2.57
398 399 3.364277 GGACATCCAACCGAGCTAC 57.636 57.895 0.00 0.00 35.64 3.58
405 406 1.447314 GGACGTCGGACATCCAACC 60.447 63.158 17.73 3.04 35.14 3.77
406 407 1.447314 GGGACGTCGGACATCCAAC 60.447 63.158 23.11 4.80 33.87 3.77
407 408 2.975536 GGGACGTCGGACATCCAA 59.024 61.111 23.11 0.00 33.87 3.53
432 433 2.025418 AAATGTCGTGTCCGCGGAC 61.025 57.895 43.88 43.88 44.77 4.79
433 434 2.024868 CAAATGTCGTGTCCGCGGA 61.025 57.895 27.28 27.28 0.00 5.54
434 435 2.474266 CAAATGTCGTGTCCGCGG 59.526 61.111 22.12 22.12 0.00 6.46
435 436 2.314647 ACCAAATGTCGTGTCCGCG 61.315 57.895 0.00 0.00 0.00 6.46
436 437 1.206578 CACCAAATGTCGTGTCCGC 59.793 57.895 0.00 0.00 0.00 5.54
437 438 1.393539 GATCACCAAATGTCGTGTCCG 59.606 52.381 0.00 0.00 0.00 4.79
438 439 1.737793 GGATCACCAAATGTCGTGTCC 59.262 52.381 0.00 0.00 35.97 4.02
439 440 1.393539 CGGATCACCAAATGTCGTGTC 59.606 52.381 0.00 0.00 35.59 3.67
440 441 1.438651 CGGATCACCAAATGTCGTGT 58.561 50.000 0.00 0.00 35.59 4.49
441 442 0.096976 GCGGATCACCAAATGTCGTG 59.903 55.000 0.00 0.00 35.59 4.35
442 443 1.358725 CGCGGATCACCAAATGTCGT 61.359 55.000 0.00 0.00 35.59 4.34
443 444 1.348250 CGCGGATCACCAAATGTCG 59.652 57.895 0.00 0.00 35.59 4.35
444 445 0.802494 AACGCGGATCACCAAATGTC 59.198 50.000 12.47 0.00 35.59 3.06
445 446 0.521291 CAACGCGGATCACCAAATGT 59.479 50.000 12.47 0.00 35.59 2.71
446 447 0.801872 TCAACGCGGATCACCAAATG 59.198 50.000 12.47 0.00 35.59 2.32
447 448 1.529226 TTCAACGCGGATCACCAAAT 58.471 45.000 12.47 0.00 35.59 2.32
448 449 1.309950 TTTCAACGCGGATCACCAAA 58.690 45.000 12.47 0.00 35.59 3.28
449 450 1.529226 ATTTCAACGCGGATCACCAA 58.471 45.000 12.47 0.00 35.59 3.67
450 451 1.198867 CAATTTCAACGCGGATCACCA 59.801 47.619 12.47 0.00 35.59 4.17
451 452 1.895051 CAATTTCAACGCGGATCACC 58.105 50.000 12.47 0.00 0.00 4.02
452 453 1.259316 GCAATTTCAACGCGGATCAC 58.741 50.000 12.47 0.00 0.00 3.06
453 454 0.877743 TGCAATTTCAACGCGGATCA 59.122 45.000 12.47 0.00 0.00 2.92
454 455 1.135689 AGTGCAATTTCAACGCGGATC 60.136 47.619 12.47 0.00 0.00 3.36
455 456 0.881118 AGTGCAATTTCAACGCGGAT 59.119 45.000 12.47 0.00 0.00 4.18
456 457 1.514003 TAGTGCAATTTCAACGCGGA 58.486 45.000 12.47 0.00 0.00 5.54
457 458 2.095969 TCTTAGTGCAATTTCAACGCGG 60.096 45.455 12.47 0.00 0.00 6.46
458 459 3.181826 TCTTAGTGCAATTTCAACGCG 57.818 42.857 3.53 3.53 0.00 6.01
459 460 5.212194 TCTTTCTTAGTGCAATTTCAACGC 58.788 37.500 0.00 0.00 0.00 4.84
460 461 6.912591 ACTTCTTTCTTAGTGCAATTTCAACG 59.087 34.615 0.00 0.00 0.00 4.10
461 462 8.534778 CAACTTCTTTCTTAGTGCAATTTCAAC 58.465 33.333 0.00 0.00 0.00 3.18
462 463 8.465999 TCAACTTCTTTCTTAGTGCAATTTCAA 58.534 29.630 0.00 0.00 0.00 2.69
463 464 7.995289 TCAACTTCTTTCTTAGTGCAATTTCA 58.005 30.769 0.00 0.00 0.00 2.69
464 465 7.592903 CCTCAACTTCTTTCTTAGTGCAATTTC 59.407 37.037 0.00 0.00 0.00 2.17
465 466 7.428826 CCTCAACTTCTTTCTTAGTGCAATTT 58.571 34.615 0.00 0.00 0.00 1.82
466 467 6.515696 GCCTCAACTTCTTTCTTAGTGCAATT 60.516 38.462 0.00 0.00 0.00 2.32
467 468 5.048434 GCCTCAACTTCTTTCTTAGTGCAAT 60.048 40.000 0.00 0.00 0.00 3.56
468 469 4.275936 GCCTCAACTTCTTTCTTAGTGCAA 59.724 41.667 0.00 0.00 0.00 4.08
469 470 3.815401 GCCTCAACTTCTTTCTTAGTGCA 59.185 43.478 0.00 0.00 0.00 4.57
470 471 3.120511 CGCCTCAACTTCTTTCTTAGTGC 60.121 47.826 0.00 0.00 0.00 4.40
471 472 4.307432 TCGCCTCAACTTCTTTCTTAGTG 58.693 43.478 0.00 0.00 0.00 2.74
472 473 4.602340 TCGCCTCAACTTCTTTCTTAGT 57.398 40.909 0.00 0.00 0.00 2.24
473 474 4.143305 CGTTCGCCTCAACTTCTTTCTTAG 60.143 45.833 0.00 0.00 0.00 2.18
474 475 3.739300 CGTTCGCCTCAACTTCTTTCTTA 59.261 43.478 0.00 0.00 0.00 2.10
475 476 2.544267 CGTTCGCCTCAACTTCTTTCTT 59.456 45.455 0.00 0.00 0.00 2.52
476 477 2.135933 CGTTCGCCTCAACTTCTTTCT 58.864 47.619 0.00 0.00 0.00 2.52
477 478 1.398578 GCGTTCGCCTCAACTTCTTTC 60.399 52.381 5.87 0.00 0.00 2.62
478 479 0.586802 GCGTTCGCCTCAACTTCTTT 59.413 50.000 5.87 0.00 0.00 2.52
517 523 1.955778 CTTGGCATGCCGATTTATCCA 59.044 47.619 30.87 7.94 39.42 3.41
567 573 1.664965 GCACTTCTTCACTCGCGGT 60.665 57.895 6.13 0.00 0.00 5.68
572 578 4.621991 TGACAAGTAGCACTTCTTCACTC 58.378 43.478 0.00 0.00 36.03 3.51
575 581 4.621991 GACTGACAAGTAGCACTTCTTCA 58.378 43.478 0.00 4.87 36.03 3.02
580 586 1.000955 CCCGACTGACAAGTAGCACTT 59.999 52.381 0.00 0.00 39.39 3.16
581 587 0.603569 CCCGACTGACAAGTAGCACT 59.396 55.000 0.00 0.00 36.52 4.40
582 588 1.014564 GCCCGACTGACAAGTAGCAC 61.015 60.000 0.00 0.00 36.52 4.40
584 590 0.458716 GAGCCCGACTGACAAGTAGC 60.459 60.000 0.00 0.00 36.52 3.58
586 592 1.255667 GGGAGCCCGACTGACAAGTA 61.256 60.000 0.00 0.00 36.52 2.24
630 655 4.162690 CGTAGGCAGAGTGGGGGC 62.163 72.222 0.00 0.00 0.00 5.80
631 656 2.683933 ACGTAGGCAGAGTGGGGG 60.684 66.667 0.00 0.00 0.00 5.40
632 657 2.283529 ACACGTAGGCAGAGTGGGG 61.284 63.158 10.15 0.00 39.95 4.96
633 658 1.079819 CACACGTAGGCAGAGTGGG 60.080 63.158 10.15 3.24 39.95 4.61
634 659 1.738099 GCACACGTAGGCAGAGTGG 60.738 63.158 5.80 2.37 39.95 4.00
635 660 2.088763 CGCACACGTAGGCAGAGTG 61.089 63.158 10.69 3.82 41.28 3.51
636 661 2.258591 CGCACACGTAGGCAGAGT 59.741 61.111 10.69 0.00 33.53 3.24
778 816 1.153147 GGCGAGGGGAGCTAAAAGG 60.153 63.158 0.00 0.00 34.52 3.11
789 827 0.536687 TACGGTCTGATAGGCGAGGG 60.537 60.000 0.00 0.00 0.00 4.30
791 829 0.235144 CGTACGGTCTGATAGGCGAG 59.765 60.000 7.57 0.00 0.00 5.03
792 830 1.162181 CCGTACGGTCTGATAGGCGA 61.162 60.000 26.39 0.00 0.00 5.54
935 990 3.745803 GAGTTGCTGCTGCTGGGC 61.746 66.667 17.00 7.19 40.48 5.36
936 991 1.654954 GATGAGTTGCTGCTGCTGGG 61.655 60.000 17.00 0.00 40.48 4.45
937 992 1.801332 GATGAGTTGCTGCTGCTGG 59.199 57.895 17.00 0.00 40.48 4.85
940 995 1.423056 GTCGATGAGTTGCTGCTGC 59.577 57.895 8.89 8.89 40.20 5.25
1232 1295 4.415150 CCATCCTGCCCAGCACGT 62.415 66.667 0.00 0.00 33.79 4.49
1390 1465 2.187946 GGAGGAGACCATGGCGTG 59.812 66.667 13.04 0.00 0.00 5.34
1410 1485 1.270550 GACGGTCGAAGTACCTTGGAA 59.729 52.381 0.00 0.00 37.39 3.53
1445 1523 2.109834 ACCAGTGAAATGGAATGTGGGA 59.890 45.455 3.39 0.00 43.57 4.37
1446 1524 2.231964 CACCAGTGAAATGGAATGTGGG 59.768 50.000 3.39 0.00 43.57 4.61
1681 1794 1.821061 GCCCCGATCATGGAGTCGAT 61.821 60.000 14.67 0.00 40.11 3.59
1725 1838 1.522569 GATCCCCCTGGTCTTGACG 59.477 63.158 0.00 0.00 0.00 4.35
1871 1984 9.403583 ACTGTTGTATCTTTTCCAACTTCTTAA 57.596 29.630 0.00 0.00 39.30 1.85
1872 1985 8.974060 ACTGTTGTATCTTTTCCAACTTCTTA 57.026 30.769 0.00 0.00 39.30 2.10
1873 1986 7.881775 ACTGTTGTATCTTTTCCAACTTCTT 57.118 32.000 0.00 0.00 39.30 2.52
1874 1987 7.556275 TCAACTGTTGTATCTTTTCCAACTTCT 59.444 33.333 19.12 0.00 39.30 2.85
1875 1988 7.703328 TCAACTGTTGTATCTTTTCCAACTTC 58.297 34.615 19.12 0.00 39.30 3.01
1876 1989 7.339466 ACTCAACTGTTGTATCTTTTCCAACTT 59.661 33.333 19.12 0.00 39.30 2.66
1877 1990 6.828785 ACTCAACTGTTGTATCTTTTCCAACT 59.171 34.615 19.12 0.00 39.30 3.16
1881 1994 6.293462 GGTGACTCAACTGTTGTATCTTTTCC 60.293 42.308 19.12 13.70 0.00 3.13
1957 2070 6.866010 TGACGTACTGGTAATGTATATCGT 57.134 37.500 0.00 0.00 0.00 3.73
1977 2090 2.684881 CCCTATCCAACAGTGCAATGAC 59.315 50.000 22.73 0.00 0.00 3.06
2077 2195 8.950403 AGATGTTTTGTAGCTTTCGATAAAAC 57.050 30.769 10.64 10.64 38.44 2.43
2082 2200 5.473504 ACCAAGATGTTTTGTAGCTTTCGAT 59.526 36.000 0.00 0.00 0.00 3.59
2084 2202 5.108385 ACCAAGATGTTTTGTAGCTTTCG 57.892 39.130 0.00 0.00 0.00 3.46
2148 2269 9.545105 TTAATATGCCCTTTCAGCAATTTTATG 57.455 29.630 0.00 0.00 44.83 1.90
2166 2287 8.349983 AGTAAACGGTGGAATGAATTAATATGC 58.650 33.333 0.00 0.00 0.00 3.14
2201 2335 6.920817 AGAAAAGACCGAGTTTCAAACTTTT 58.079 32.000 3.76 0.00 43.03 2.27
2232 2371 1.436600 AGCTGTGCTTTCTCGTGATG 58.563 50.000 0.00 0.00 33.89 3.07
2291 2431 4.336889 ACTTTTGACACAGATTCCTCGA 57.663 40.909 0.00 0.00 0.00 4.04
2371 2519 3.305335 GCCCCGCAGATTTTATAACATGG 60.305 47.826 0.00 0.00 0.00 3.66
2405 2553 6.202762 CAGTAACAGCGGATGCAGATTAATTA 59.797 38.462 0.00 0.00 46.23 1.40
2414 2562 0.320050 TGACAGTAACAGCGGATGCA 59.680 50.000 0.00 0.00 46.23 3.96
2458 2606 6.817765 TCTTGCGAAAAGAATTGACCTAAT 57.182 33.333 0.00 0.00 0.00 1.73
2474 2624 3.485711 GCATGATTGTTCGATTCTTGCGA 60.486 43.478 0.00 0.00 32.97 5.10
2516 2670 4.159377 TCCGTTGACTTGATTCATTTGC 57.841 40.909 0.00 0.00 0.00 3.68
2563 2717 7.435068 TGAACCTTGAGTAAATGTTAAGCTC 57.565 36.000 0.00 0.00 28.05 4.09
2614 2768 9.857656 AGTGTACAAGTGGCTTACTATATAGTA 57.142 33.333 17.03 17.03 39.18 1.82
2615 2769 8.763984 AGTGTACAAGTGGCTTACTATATAGT 57.236 34.615 19.07 19.07 39.18 2.12
2616 2770 9.069082 AGAGTGTACAAGTGGCTTACTATATAG 57.931 37.037 8.27 8.27 39.18 1.31
2673 2828 2.033801 GCAAGCCGCAATCTGTGAATAT 59.966 45.455 0.00 0.00 41.79 1.28
2691 2846 1.071699 ACTGCCTTTTCTACCTCGCAA 59.928 47.619 0.00 0.00 0.00 4.85
2939 3463 1.000060 GAGTACAACCACCAGTACGCA 60.000 52.381 0.00 0.00 43.98 5.24
2944 3468 1.991121 TCGAGAGTACAACCACCAGT 58.009 50.000 0.00 0.00 0.00 4.00
2958 3487 0.675837 AACACGAGGGTCGATCGAGA 60.676 55.000 20.09 0.00 43.74 4.04
2959 3488 0.170561 AAACACGAGGGTCGATCGAG 59.829 55.000 20.09 9.00 43.74 4.04
2960 3489 1.399440 CTAAACACGAGGGTCGATCGA 59.601 52.381 15.15 15.15 43.74 3.59
2962 3491 2.479219 GGACTAAACACGAGGGTCGATC 60.479 54.545 2.82 0.00 43.74 3.69
2963 3492 1.475682 GGACTAAACACGAGGGTCGAT 59.524 52.381 2.82 0.00 43.74 3.59
3011 3541 5.715070 ACACATCTGAAGAGCTACTTACAC 58.285 41.667 0.00 0.00 39.13 2.90
3039 3569 3.140325 TGATTCCAAGTTGACCTCACC 57.860 47.619 3.87 0.00 0.00 4.02
3072 3602 6.092807 GTGCGAGTAGATCCTCTTCAATTTTT 59.907 38.462 0.00 0.00 0.00 1.94
3076 3606 3.243234 CGTGCGAGTAGATCCTCTTCAAT 60.243 47.826 0.00 0.00 0.00 2.57
3083 3613 1.135083 CAAACCGTGCGAGTAGATCCT 60.135 52.381 0.00 0.00 0.00 3.24
3086 3616 0.739813 GCCAAACCGTGCGAGTAGAT 60.740 55.000 0.00 0.00 0.00 1.98
3098 3628 2.675075 TAAGCGCCAGGCCAAACC 60.675 61.111 5.01 0.00 45.17 3.27
3190 3720 2.341176 CAACCAAGGCTTGCTGGC 59.659 61.111 21.77 0.00 42.15 4.85
3227 3761 2.080693 CGATTTCGAACATTGGGTGGA 58.919 47.619 0.00 0.00 43.02 4.02
3331 3874 6.140737 CACGAGAAAGTTTGAATGCAGTTTAC 59.859 38.462 0.00 0.00 0.00 2.01
3383 3926 8.088981 AGATTACAAACACGAGAATAGTTGAGT 58.911 33.333 0.00 0.00 0.00 3.41
3406 3950 5.171339 AGCTCCTTACAATGTTGTCAGAT 57.829 39.130 8.29 0.00 42.35 2.90
3407 3951 4.040339 TGAGCTCCTTACAATGTTGTCAGA 59.960 41.667 12.15 1.84 42.35 3.27
3550 5488 7.984617 AGAAAGCTGAAATTAACTAGAGCCTAG 59.015 37.037 0.00 7.46 0.00 3.02
3596 5535 1.275291 CCCAAAAGCCTACTCTCACGA 59.725 52.381 0.00 0.00 0.00 4.35
3650 5591 1.888436 GAGCGACATGAGGGTGTGGA 61.888 60.000 0.00 0.00 30.43 4.02
3674 5615 1.551019 GGGTTAGCTCCCCGTCACTT 61.551 60.000 5.66 0.00 41.54 3.16
3709 5650 0.689412 GGAGGAAGGAGAGGGGACTG 60.689 65.000 0.00 0.00 44.43 3.51
3723 5665 3.695825 GGTGAGGGGAGGGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
3789 5731 1.609501 CGGAGGAGAGAACACCCCA 60.610 63.158 0.00 0.00 0.00 4.96
3794 5736 0.318441 CAAGTGCGGAGGAGAGAACA 59.682 55.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.