Multiple sequence alignment - TraesCS5A01G380700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G380700 chr5A 100.000 5385 0 0 1 5385 578042596 578047980 0.000000e+00 9945.0
1 TraesCS5A01G380700 chr5A 94.146 615 32 3 1 614 115683765 115684376 0.000000e+00 933.0
2 TraesCS5A01G380700 chr5A 92.707 617 40 3 1 616 170010045 170010657 0.000000e+00 885.0
3 TraesCS5A01G380700 chr5A 88.350 515 37 10 616 1114 578022387 578022894 9.980000e-167 597.0
4 TraesCS5A01G380700 chr5A 92.130 432 21 6 1158 1586 578022898 578023319 9.980000e-167 597.0
5 TraesCS5A01G380700 chr5B 94.450 3225 167 5 907 4127 563118815 563122031 0.000000e+00 4953.0
6 TraesCS5A01G380700 chr5B 84.691 614 58 22 4231 4821 563122585 563123185 1.010000e-161 580.0
7 TraesCS5A01G380700 chr5B 90.698 258 24 0 5127 5384 563123203 563123460 1.440000e-90 344.0
8 TraesCS5A01G380700 chr5B 88.764 178 20 0 4777 4954 266982108 266982285 9.080000e-53 219.0
9 TraesCS5A01G380700 chr5B 86.559 186 24 1 4777 4962 173731984 173731800 2.540000e-48 204.0
10 TraesCS5A01G380700 chr5D 95.240 2983 123 13 1158 4130 459063530 459066503 0.000000e+00 4704.0
11 TraesCS5A01G380700 chr5D 85.842 671 53 23 4189 4821 459066719 459067385 0.000000e+00 675.0
12 TraesCS5A01G380700 chr5D 83.789 512 60 14 616 1118 459063033 459063530 1.060000e-126 464.0
13 TraesCS5A01G380700 chr5D 90.909 264 19 3 5124 5382 459067413 459067676 3.090000e-92 350.0
14 TraesCS5A01G380700 chr5D 90.805 174 16 0 4781 4954 299406116 299406289 3.240000e-57 233.0
15 TraesCS5A01G380700 chr5D 88.764 178 19 1 4777 4954 52604774 52604950 3.270000e-52 217.0
16 TraesCS5A01G380700 chr5D 93.478 92 5 1 4981 5071 416785930 416786021 9.410000e-28 135.0
17 TraesCS5A01G380700 chr3A 93.485 614 32 5 3 614 556472600 556473207 0.000000e+00 905.0
18 TraesCS5A01G380700 chr2A 93.204 618 37 2 4 620 619937019 619936406 0.000000e+00 904.0
19 TraesCS5A01G380700 chr6A 93.160 614 38 4 3 614 263758413 263757802 0.000000e+00 898.0
20 TraesCS5A01G380700 chr6A 83.071 254 28 10 4419 4660 33391447 33391197 3.270000e-52 217.0
21 TraesCS5A01G380700 chr6A 78.470 353 49 20 4272 4607 33302891 33302549 7.070000e-49 206.0
22 TraesCS5A01G380700 chr6A 79.394 330 38 22 4342 4660 33524936 33524626 7.070000e-49 206.0
23 TraesCS5A01G380700 chr1A 92.926 622 35 6 1 619 267916146 267916761 0.000000e+00 896.0
24 TraesCS5A01G380700 chr1A 92.846 615 42 2 1 614 497078909 497079522 0.000000e+00 891.0
25 TraesCS5A01G380700 chr7A 92.974 612 38 2 4 614 222428460 222427853 0.000000e+00 887.0
26 TraesCS5A01G380700 chr7A 92.718 618 38 5 1 616 532689850 532690462 0.000000e+00 885.0
27 TraesCS5A01G380700 chr4A 81.519 395 44 23 4267 4652 655665448 655665822 1.130000e-76 298.0
28 TraesCS5A01G380700 chr4A 87.075 147 11 5 4520 4661 146562444 146562587 5.580000e-35 159.0
29 TraesCS5A01G380700 chr3B 88.947 190 17 2 4777 4963 630594252 630594064 1.170000e-56 231.0
30 TraesCS5A01G380700 chr3B 88.764 178 20 0 4777 4954 271190982 271190805 9.080000e-53 219.0
31 TraesCS5A01G380700 chr3B 87.898 157 5 6 4981 5123 588857493 588857337 7.170000e-39 172.0
32 TraesCS5A01G380700 chr3B 87.179 156 6 7 4981 5122 230932907 230932752 1.200000e-36 165.0
33 TraesCS5A01G380700 chr3B 75.000 164 35 5 1321 1484 779548137 779547980 2.690000e-08 71.3
34 TraesCS5A01G380700 chrUn 88.172 186 21 1 4777 4962 66416366 66416550 2.520000e-53 220.0
35 TraesCS5A01G380700 chrUn 87.059 170 8 6 4973 5128 16946840 16947009 4.290000e-41 180.0
36 TraesCS5A01G380700 chrUn 87.059 170 8 6 4973 5128 266451086 266451255 4.290000e-41 180.0
37 TraesCS5A01G380700 chrUn 87.059 170 8 6 4973 5128 282238451 282238282 4.290000e-41 180.0
38 TraesCS5A01G380700 chr3D 90.000 170 17 0 4777 4946 554058282 554058113 2.520000e-53 220.0
39 TraesCS5A01G380700 chr3D 86.624 157 7 6 4981 5123 556952161 556952317 1.550000e-35 161.0
40 TraesCS5A01G380700 chr4D 88.043 184 21 1 4781 4963 492804449 492804266 3.270000e-52 217.0
41 TraesCS5A01G380700 chr2B 84.946 186 17 6 4494 4674 68622103 68621924 1.540000e-40 178.0
42 TraesCS5A01G380700 chr2B 87.821 156 5 6 4981 5122 23238877 23238722 2.580000e-38 171.0
43 TraesCS5A01G380700 chr2D 83.041 171 20 6 4495 4662 43918622 43918458 4.350000e-31 147.0
44 TraesCS5A01G380700 chr6B 84.076 157 9 7 4981 5122 95769405 95769250 2.620000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G380700 chr5A 578042596 578047980 5384 False 9945.00 9945 100.000000 1 5385 1 chr5A.!!$F3 5384
1 TraesCS5A01G380700 chr5A 115683765 115684376 611 False 933.00 933 94.146000 1 614 1 chr5A.!!$F1 613
2 TraesCS5A01G380700 chr5A 170010045 170010657 612 False 885.00 885 92.707000 1 616 1 chr5A.!!$F2 615
3 TraesCS5A01G380700 chr5A 578022387 578023319 932 False 597.00 597 90.240000 616 1586 2 chr5A.!!$F4 970
4 TraesCS5A01G380700 chr5B 563118815 563123460 4645 False 1959.00 4953 89.946333 907 5384 3 chr5B.!!$F2 4477
5 TraesCS5A01G380700 chr5D 459063033 459067676 4643 False 1548.25 4704 88.945000 616 5382 4 chr5D.!!$F4 4766
6 TraesCS5A01G380700 chr3A 556472600 556473207 607 False 905.00 905 93.485000 3 614 1 chr3A.!!$F1 611
7 TraesCS5A01G380700 chr2A 619936406 619937019 613 True 904.00 904 93.204000 4 620 1 chr2A.!!$R1 616
8 TraesCS5A01G380700 chr6A 263757802 263758413 611 True 898.00 898 93.160000 3 614 1 chr6A.!!$R4 611
9 TraesCS5A01G380700 chr1A 267916146 267916761 615 False 896.00 896 92.926000 1 619 1 chr1A.!!$F1 618
10 TraesCS5A01G380700 chr1A 497078909 497079522 613 False 891.00 891 92.846000 1 614 1 chr1A.!!$F2 613
11 TraesCS5A01G380700 chr7A 222427853 222428460 607 True 887.00 887 92.974000 4 614 1 chr7A.!!$R1 610
12 TraesCS5A01G380700 chr7A 532689850 532690462 612 False 885.00 885 92.718000 1 616 1 chr7A.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 429 0.101579 TGAACGTGTGCTGAACTCGA 59.898 50.0 16.41 0.0 46.19 4.04 F
1837 1872 0.551377 TTGTGGGGGCTGGAGGATTA 60.551 55.0 0.00 0.0 0.00 1.75 F
3319 3366 0.729116 CTCATCGCGTCAAATTGCCT 59.271 50.0 5.77 0.0 0.00 4.75 F
4042 4089 0.032515 TGGAGGAGGTCGAGGCATTA 60.033 55.0 0.00 0.0 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2260 2307 0.107643 TGCCGATTCTGGTTGTCACA 59.892 50.0 0.00 0.0 0.0 3.58 R
3437 3484 0.107066 TCACTGATGCGCCAATCCAT 60.107 50.0 4.18 0.0 0.0 3.41 R
4220 4668 0.319383 AGCAGTCAACGCTGAGACAG 60.319 55.0 0.00 0.0 38.6 3.51 R
5336 5890 0.543277 TCTGCTCATTGCCTCGGATT 59.457 50.0 0.00 0.0 42.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 1.838077 CCGAATTGGACTAGGGAAGGT 59.162 52.381 0.00 0.00 42.00 3.50
200 207 3.170717 CTCCTTTATATACGGGGGCAGA 58.829 50.000 0.00 0.00 0.00 4.26
274 281 3.324846 CCTCCATCATAATCCACCTCGAA 59.675 47.826 0.00 0.00 0.00 3.71
422 429 0.101579 TGAACGTGTGCTGAACTCGA 59.898 50.000 16.41 0.00 46.19 4.04
433 440 0.892755 TGAACTCGAAGGTGCCGTAT 59.107 50.000 0.00 0.00 0.00 3.06
489 496 1.392168 ACGATTACATCAACCGCGTTG 59.608 47.619 4.92 10.14 43.99 4.10
493 500 1.867166 TACATCAACCGCGTTGTCAA 58.133 45.000 16.97 3.56 43.23 3.18
550 557 3.199677 CGATACTCTCCTCTCTCGTTGT 58.800 50.000 0.00 0.00 0.00 3.32
564 571 5.017294 TCTCGTTGTTATGCATCACCATA 57.983 39.130 0.19 0.00 0.00 2.74
641 650 3.716195 CCACCATCGCCACTCCCA 61.716 66.667 0.00 0.00 0.00 4.37
705 715 1.821753 CTTGCGAGGAAGGAGAGAAGA 59.178 52.381 0.00 0.00 0.00 2.87
742 752 4.201822 CCAATGCGAAAAGGTAGAAGTAGC 60.202 45.833 0.00 0.00 0.00 3.58
754 764 1.923227 GAAGTAGCAAAGCGGTGGGC 61.923 60.000 2.83 2.83 44.05 5.36
788 799 6.348621 TGCAAGAAAAATCAAAGAAGCAAC 57.651 33.333 0.00 0.00 0.00 4.17
802 813 2.770164 AGCAACCACACACCTCTATC 57.230 50.000 0.00 0.00 0.00 2.08
805 816 2.881074 CAACCACACACCTCTATCGAG 58.119 52.381 0.00 0.00 37.01 4.04
818 834 6.319152 CACCTCTATCGAGAAAGACCTAAAGA 59.681 42.308 0.00 0.00 39.74 2.52
820 836 7.067737 ACCTCTATCGAGAAAGACCTAAAGAAG 59.932 40.741 0.00 0.00 39.74 2.85
823 839 8.679100 TCTATCGAGAAAGACCTAAAGAAGAAG 58.321 37.037 0.00 0.00 0.00 2.85
824 840 6.026947 TCGAGAAAGACCTAAAGAAGAAGG 57.973 41.667 0.00 0.00 38.93 3.46
825 841 5.773680 TCGAGAAAGACCTAAAGAAGAAGGA 59.226 40.000 0.00 0.00 36.66 3.36
826 842 6.071840 TCGAGAAAGACCTAAAGAAGAAGGAG 60.072 42.308 0.00 0.00 36.66 3.69
827 843 6.367374 AGAAAGACCTAAAGAAGAAGGAGG 57.633 41.667 0.00 0.00 36.66 4.30
828 844 6.085416 AGAAAGACCTAAAGAAGAAGGAGGA 58.915 40.000 0.00 0.00 36.66 3.71
829 845 6.212589 AGAAAGACCTAAAGAAGAAGGAGGAG 59.787 42.308 0.00 0.00 36.66 3.69
861 877 1.638529 AAAAATCGGGCCACAATCCA 58.361 45.000 4.39 0.00 0.00 3.41
862 878 1.638529 AAAATCGGGCCACAATCCAA 58.361 45.000 4.39 0.00 0.00 3.53
863 879 1.638529 AAATCGGGCCACAATCCAAA 58.361 45.000 4.39 0.00 0.00 3.28
864 880 1.638529 AATCGGGCCACAATCCAAAA 58.361 45.000 4.39 0.00 0.00 2.44
865 881 1.638529 ATCGGGCCACAATCCAAAAA 58.361 45.000 4.39 0.00 0.00 1.94
967 993 3.131396 CTGTTTTACTCGCCTTCACACT 58.869 45.455 0.00 0.00 0.00 3.55
1040 1066 2.010582 TTTCTTTGCCTTGCCGCGTT 62.011 50.000 4.92 0.00 0.00 4.84
1078 1106 2.544685 CCAGACAGAGATTTGCTACGG 58.455 52.381 0.00 0.00 0.00 4.02
1127 1159 2.166459 TCCATCATCTTCACTCACCGTC 59.834 50.000 0.00 0.00 0.00 4.79
1144 1176 1.933181 CGTCGCAGAAAAGCCATATCA 59.067 47.619 0.00 0.00 39.69 2.15
1147 1179 3.561310 GTCGCAGAAAAGCCATATCATCA 59.439 43.478 0.00 0.00 39.69 3.07
1148 1180 4.035558 GTCGCAGAAAAGCCATATCATCAA 59.964 41.667 0.00 0.00 39.69 2.57
1154 1186 5.704515 AGAAAAGCCATATCATCAATCCTCG 59.295 40.000 0.00 0.00 0.00 4.63
1155 1187 4.897509 AAGCCATATCATCAATCCTCGA 57.102 40.909 0.00 0.00 0.00 4.04
1156 1188 4.468765 AGCCATATCATCAATCCTCGAG 57.531 45.455 5.13 5.13 0.00 4.04
1194 1226 3.255379 GGGACGCGATCGACAAGC 61.255 66.667 21.57 0.00 39.41 4.01
1609 1644 1.227615 GCAGATCCAGGAGCTCAGC 60.228 63.158 17.19 2.33 0.00 4.26
1612 1647 4.218578 ATCCAGGAGCTCAGCGCG 62.219 66.667 17.19 0.00 45.59 6.86
1654 1689 1.134788 CGCCGGAAGAGGTACAAGATT 60.135 52.381 5.05 0.00 0.00 2.40
1658 1693 4.122776 CCGGAAGAGGTACAAGATTGATG 58.877 47.826 0.00 0.00 0.00 3.07
1659 1694 3.557595 CGGAAGAGGTACAAGATTGATGC 59.442 47.826 0.00 0.00 0.00 3.91
1660 1695 3.557595 GGAAGAGGTACAAGATTGATGCG 59.442 47.826 0.00 0.00 0.00 4.73
1804 1839 2.295909 GGACGATGGAGAAGAGAGGATG 59.704 54.545 0.00 0.00 0.00 3.51
1807 1842 4.026744 ACGATGGAGAAGAGAGGATGAAA 58.973 43.478 0.00 0.00 0.00 2.69
1837 1872 0.551377 TTGTGGGGGCTGGAGGATTA 60.551 55.000 0.00 0.00 0.00 1.75
1877 1912 3.973206 ATCAGGTGTACCGAAACATCA 57.027 42.857 3.65 0.00 42.08 3.07
2134 2181 5.221880 TGATAACATGCTTGTGTTTTCTGC 58.778 37.500 5.94 0.00 42.08 4.26
2141 2188 6.201425 ACATGCTTGTGTTTTCTGCTTATTTG 59.799 34.615 4.14 0.00 33.85 2.32
2143 2190 6.336566 TGCTTGTGTTTTCTGCTTATTTGAA 58.663 32.000 0.00 0.00 0.00 2.69
2233 2280 4.925068 AGATTATCAAATGTGCTTTCGGC 58.075 39.130 0.00 0.00 42.22 5.54
2239 2286 1.453155 AATGTGCTTTCGGCGAGAAT 58.547 45.000 10.46 0.00 45.43 2.40
2260 2307 9.331282 GAGAATACTTGTGGCAGTAGAATAATT 57.669 33.333 3.04 0.00 32.66 1.40
2275 2322 9.167311 AGTAGAATAATTGTGACAACCAGAATC 57.833 33.333 0.00 0.00 37.73 2.52
2374 2421 7.821359 CACTCCAAGATGTTATTCTTCAGAAGA 59.179 37.037 8.95 8.95 37.48 2.87
2394 2441 6.760770 AGAAGAATTTTCGGCTCTGAAGATAG 59.239 38.462 0.00 0.00 0.00 2.08
2404 2451 3.244491 GCTCTGAAGATAGATGCCCACAT 60.244 47.826 0.00 0.00 39.98 3.21
2582 2629 3.065786 CGATGTGGAGGAAATGAACATGG 59.934 47.826 0.00 0.00 31.82 3.66
2591 2638 6.931840 GGAGGAAATGAACATGGTACTATCTC 59.068 42.308 0.00 0.00 0.00 2.75
2735 2782 2.062636 AGGTTTTTGGAGGCAGGACTA 58.937 47.619 0.00 0.00 0.00 2.59
3036 3083 4.248859 CTCAACATGTTCAGGTACTCTGG 58.751 47.826 8.48 0.00 43.53 3.86
3226 3273 5.506317 GCTGCAGTTATTGGTGATATTGGAC 60.506 44.000 16.64 0.00 0.00 4.02
3243 3290 2.237143 TGGACCTTCTCAACTGCTATGG 59.763 50.000 0.00 0.00 0.00 2.74
3319 3366 0.729116 CTCATCGCGTCAAATTGCCT 59.271 50.000 5.77 0.00 0.00 4.75
3429 3476 2.358898 GCAGCTTGACCAAACTGAGAAA 59.641 45.455 15.06 0.00 31.67 2.52
3437 3484 3.951680 GACCAAACTGAGAAACCTTGGAA 59.048 43.478 6.16 0.00 39.12 3.53
3550 3597 3.845178 TCGATGTTTAACGCTCATCAGT 58.155 40.909 0.00 0.00 38.15 3.41
3591 3638 2.190578 GGATTCCTGGTGCCCTCG 59.809 66.667 0.00 0.00 0.00 4.63
3716 3763 2.833631 AGTTGTACAGGAAACCCTCG 57.166 50.000 0.00 0.00 0.00 4.63
3793 3840 3.519510 CAGACCCCCAAGAAAGATGTCTA 59.480 47.826 0.00 0.00 30.92 2.59
3800 3847 5.513094 CCCCAAGAAAGATGTCTAGTTGTCA 60.513 44.000 0.00 0.00 0.00 3.58
3832 3879 3.433615 GGTTCCGATGTCTGAAGAAACTG 59.566 47.826 0.00 0.00 0.00 3.16
3844 3891 6.038714 GTCTGAAGAAACTGAACTTTGTCCAT 59.961 38.462 0.00 0.00 0.00 3.41
3890 3937 2.525248 GCGATGCCGATGCTCGAAA 61.525 57.895 7.07 0.00 43.74 3.46
3891 3938 1.561730 CGATGCCGATGCTCGAAAG 59.438 57.895 7.07 0.00 43.74 2.62
3895 3942 2.529619 GCCGATGCTCGAAAGGCTC 61.530 63.158 7.07 0.00 43.74 4.70
3925 3972 5.474189 TCAGATCATTGTGCATGAAGTGAAA 59.526 36.000 0.00 0.00 45.45 2.69
3933 3980 3.671928 GTGCATGAAGTGAAAACTGCATC 59.328 43.478 0.00 0.00 41.17 3.91
3945 3992 3.947910 AACTGCATCTGGATTTGGTTG 57.052 42.857 0.00 0.00 0.00 3.77
3951 3998 3.875369 GCATCTGGATTTGGTTGTCCTCT 60.875 47.826 0.00 0.00 35.49 3.69
4042 4089 0.032515 TGGAGGAGGTCGAGGCATTA 60.033 55.000 0.00 0.00 0.00 1.90
4075 4122 0.107800 AGGCTGCTGTCAGTATGCTG 60.108 55.000 4.14 4.14 42.29 4.41
4097 4144 1.066918 AACAGTCCGACACCGACAC 59.933 57.895 0.40 0.00 38.22 3.67
4099 4146 0.535780 ACAGTCCGACACCGACACTA 60.536 55.000 0.40 0.00 38.22 2.74
4101 4148 1.154338 GTCCGACACCGACACTACG 60.154 63.158 0.00 0.00 38.22 3.51
4130 4177 1.123077 TGAACCGGAGATGCTAGCAT 58.877 50.000 29.97 29.97 39.69 3.79
4166 4260 3.268334 AGGTATTGATTGGCTGGTGGTTA 59.732 43.478 0.00 0.00 0.00 2.85
4220 4668 2.032178 GTCAGCTGTCTTTGTGGACAAC 59.968 50.000 14.67 0.00 44.24 3.32
4229 4727 1.953559 TTGTGGACAACTGTCTCAGC 58.046 50.000 9.60 0.00 44.20 4.26
4261 4759 2.567049 CCGTGTCTCCGGTCAGAC 59.433 66.667 14.83 14.83 43.07 3.51
4262 4760 1.972223 CCGTGTCTCCGGTCAGACT 60.972 63.158 20.51 0.00 43.00 3.24
4263 4761 1.210413 CGTGTCTCCGGTCAGACTG 59.790 63.158 20.51 11.55 43.00 3.51
4264 4762 1.235281 CGTGTCTCCGGTCAGACTGA 61.235 60.000 20.51 0.00 43.00 3.41
4266 4764 2.366533 GTGTCTCCGGTCAGACTGATA 58.633 52.381 20.51 1.77 43.00 2.15
4267 4765 2.356382 GTGTCTCCGGTCAGACTGATAG 59.644 54.545 20.51 8.00 43.00 2.08
4268 4766 2.238898 TGTCTCCGGTCAGACTGATAGA 59.761 50.000 20.51 10.13 43.00 1.98
4269 4767 2.614983 GTCTCCGGTCAGACTGATAGAC 59.385 54.545 20.47 20.47 39.91 2.59
4299 4807 5.057819 GGACGAGTTTTTCTTCTTCCTCTT 58.942 41.667 0.00 0.00 0.00 2.85
4300 4808 5.050023 GGACGAGTTTTTCTTCTTCCTCTTG 60.050 44.000 0.00 0.00 0.00 3.02
4325 4841 0.682852 TTGTAACTGTGTCTCCGGGG 59.317 55.000 0.00 0.00 0.00 5.73
4330 4846 0.040646 ACTGTGTCTCCGGGGTATCA 59.959 55.000 0.00 0.00 0.00 2.15
4332 4848 1.762957 CTGTGTCTCCGGGGTATCATT 59.237 52.381 0.00 0.00 0.00 2.57
4349 4867 7.361116 GGGTATCATTTTGCCATTTCTTTGTTG 60.361 37.037 0.00 0.00 0.00 3.33
4366 4884 4.603989 TGTTGTACAGAACGGATGGTAA 57.396 40.909 0.00 0.00 0.00 2.85
4418 4941 4.760715 GCTCTTGGCATGTGATTATCATCT 59.239 41.667 0.00 0.00 41.35 2.90
4419 4942 5.106634 GCTCTTGGCATGTGATTATCATCTC 60.107 44.000 0.00 0.00 41.35 2.75
4420 4943 5.932455 TCTTGGCATGTGATTATCATCTCA 58.068 37.500 0.00 0.00 37.33 3.27
4476 5000 6.628844 GCATGCTTTTGATCTCCCTTTTATGT 60.629 38.462 11.37 0.00 0.00 2.29
4478 5002 5.418840 TGCTTTTGATCTCCCTTTTATGTCC 59.581 40.000 0.00 0.00 0.00 4.02
4538 5070 6.601741 TGCAAAATTCAAGATGGTGTTTTC 57.398 33.333 0.00 0.00 0.00 2.29
4555 5087 7.282224 TGGTGTTTTCCACAGTATATATTCAGC 59.718 37.037 0.00 0.00 46.44 4.26
4557 5089 9.542462 GTGTTTTCCACAGTATATATTCAGCTA 57.458 33.333 0.00 0.00 43.92 3.32
4576 5108 6.985645 TCAGCTATGCAAAAACAGAAACAAAT 59.014 30.769 0.00 0.00 0.00 2.32
4577 5109 8.140628 TCAGCTATGCAAAAACAGAAACAAATA 58.859 29.630 0.00 0.00 0.00 1.40
4664 5202 2.357154 GCTACATCCCCTTGTTGTCCAT 60.357 50.000 0.00 0.00 0.00 3.41
4665 5203 2.514458 ACATCCCCTTGTTGTCCATC 57.486 50.000 0.00 0.00 0.00 3.51
4666 5204 1.710244 ACATCCCCTTGTTGTCCATCA 59.290 47.619 0.00 0.00 0.00 3.07
4676 5214 7.174946 CCCCTTGTTGTCCATCACATAATATAC 59.825 40.741 0.00 0.00 33.90 1.47
4677 5215 7.719193 CCCTTGTTGTCCATCACATAATATACA 59.281 37.037 0.00 0.00 33.90 2.29
4678 5216 9.288576 CCTTGTTGTCCATCACATAATATACAT 57.711 33.333 0.00 0.00 33.90 2.29
4717 5255 1.340017 GGCACCTTCTCAACATAGCCA 60.340 52.381 0.00 0.00 40.50 4.75
4741 5279 0.702316 TAAGGCAGAAAACCCCTCCC 59.298 55.000 0.00 0.00 0.00 4.30
4799 5339 9.350951 TCCTACATCCGTATATAGTCCATATTG 57.649 37.037 0.00 0.00 31.96 1.90
4832 5372 7.997773 AAAAAGAGTTATACTCCCTTTGTCC 57.002 36.000 3.33 0.00 46.18 4.02
4833 5373 6.954352 AAAGAGTTATACTCCCTTTGTCCT 57.046 37.500 3.33 0.00 46.18 3.85
4834 5374 8.445361 AAAAGAGTTATACTCCCTTTGTCCTA 57.555 34.615 3.33 0.00 46.18 2.94
4835 5375 8.445361 AAAGAGTTATACTCCCTTTGTCCTAA 57.555 34.615 3.33 0.00 46.18 2.69
4836 5376 8.445361 AAGAGTTATACTCCCTTTGTCCTAAA 57.555 34.615 3.33 0.00 46.18 1.85
4837 5377 8.445361 AGAGTTATACTCCCTTTGTCCTAAAA 57.555 34.615 3.33 0.00 46.18 1.52
4838 5378 9.059023 AGAGTTATACTCCCTTTGTCCTAAAAT 57.941 33.333 3.33 0.00 46.18 1.82
4839 5379 9.682465 GAGTTATACTCCCTTTGTCCTAAAATT 57.318 33.333 0.00 0.00 39.28 1.82
4840 5380 9.682465 AGTTATACTCCCTTTGTCCTAAAATTC 57.318 33.333 0.00 0.00 0.00 2.17
4841 5381 9.682465 GTTATACTCCCTTTGTCCTAAAATTCT 57.318 33.333 0.00 0.00 0.00 2.40
4843 5383 6.901081 ACTCCCTTTGTCCTAAAATTCTTG 57.099 37.500 0.00 0.00 0.00 3.02
4844 5384 6.373759 ACTCCCTTTGTCCTAAAATTCTTGT 58.626 36.000 0.00 0.00 0.00 3.16
4845 5385 6.490381 ACTCCCTTTGTCCTAAAATTCTTGTC 59.510 38.462 0.00 0.00 0.00 3.18
4846 5386 6.610830 TCCCTTTGTCCTAAAATTCTTGTCT 58.389 36.000 0.00 0.00 0.00 3.41
4847 5387 7.066781 TCCCTTTGTCCTAAAATTCTTGTCTT 58.933 34.615 0.00 0.00 0.00 3.01
4848 5388 8.221944 TCCCTTTGTCCTAAAATTCTTGTCTTA 58.778 33.333 0.00 0.00 0.00 2.10
4849 5389 8.515414 CCCTTTGTCCTAAAATTCTTGTCTTAG 58.485 37.037 0.00 0.00 0.00 2.18
4850 5390 9.284968 CCTTTGTCCTAAAATTCTTGTCTTAGA 57.715 33.333 0.00 0.00 0.00 2.10
4887 5427 8.882415 ACGGATGTACCTAATACTAAAACATG 57.118 34.615 0.00 0.00 34.56 3.21
4888 5428 8.698210 ACGGATGTACCTAATACTAAAACATGA 58.302 33.333 0.00 0.00 34.56 3.07
4889 5429 8.975439 CGGATGTACCTAATACTAAAACATGAC 58.025 37.037 0.00 0.00 34.56 3.06
4901 5441 7.539712 ACTAAAACATGACTTGATACATCCG 57.460 36.000 0.00 0.00 0.00 4.18
4902 5442 7.103641 ACTAAAACATGACTTGATACATCCGT 58.896 34.615 0.00 0.00 0.00 4.69
4903 5443 8.255206 ACTAAAACATGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 0.00 4.02
4904 5444 9.261180 CTAAAACATGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
4905 5445 8.506168 AAAACATGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
4906 5446 8.506168 AAACATGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
4907 5447 9.607988 AAACATGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
4908 5448 8.818141 ACATGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
4909 5449 8.638873 ACATGACTTGATACATCCGTATTTAGA 58.361 33.333 0.00 0.00 38.48 2.10
4910 5450 8.916654 CATGACTTGATACATCCGTATTTAGAC 58.083 37.037 0.00 0.00 38.48 2.59
4911 5451 8.002984 TGACTTGATACATCCGTATTTAGACA 57.997 34.615 0.00 0.00 38.48 3.41
4912 5452 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
4913 5453 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
4914 5454 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
4921 5461 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
4922 5462 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
4924 5464 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
4925 5465 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
4933 5473 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
4934 5474 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4935 5475 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4936 5476 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4937 5477 5.860611 TCTAAGACAAGAATTTTGGGACGA 58.139 37.500 0.00 0.00 0.00 4.20
4938 5478 6.292923 TCTAAGACAAGAATTTTGGGACGAA 58.707 36.000 0.00 0.00 0.00 3.85
4939 5479 5.438761 AAGACAAGAATTTTGGGACGAAG 57.561 39.130 0.00 0.00 0.00 3.79
4940 5480 3.821033 AGACAAGAATTTTGGGACGAAGG 59.179 43.478 0.00 0.00 0.00 3.46
4941 5481 2.890945 ACAAGAATTTTGGGACGAAGGG 59.109 45.455 0.00 0.00 0.00 3.95
4942 5482 3.153919 CAAGAATTTTGGGACGAAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
4943 5483 3.073274 AGAATTTTGGGACGAAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
4954 5494 4.347292 GGGACGAAGGGAGTATTTAGGAAT 59.653 45.833 0.00 0.00 0.00 3.01
4958 5498 7.015001 GGACGAAGGGAGTATTTAGGAATAGAA 59.985 40.741 0.00 0.00 0.00 2.10
4963 5503 6.499000 AGGGAGTATTTAGGAATAGAAGGAGC 59.501 42.308 0.00 0.00 0.00 4.70
4964 5504 6.270231 GGGAGTATTTAGGAATAGAAGGAGCA 59.730 42.308 0.00 0.00 0.00 4.26
4965 5505 7.202102 GGGAGTATTTAGGAATAGAAGGAGCAA 60.202 40.741 0.00 0.00 0.00 3.91
4966 5506 7.875554 GGAGTATTTAGGAATAGAAGGAGCAAG 59.124 40.741 0.00 0.00 0.00 4.01
4967 5507 7.740805 AGTATTTAGGAATAGAAGGAGCAAGG 58.259 38.462 0.00 0.00 0.00 3.61
4968 5508 5.373812 TTTAGGAATAGAAGGAGCAAGGG 57.626 43.478 0.00 0.00 0.00 3.95
4969 5509 3.136641 AGGAATAGAAGGAGCAAGGGA 57.863 47.619 0.00 0.00 0.00 4.20
4970 5510 3.674477 AGGAATAGAAGGAGCAAGGGAT 58.326 45.455 0.00 0.00 0.00 3.85
4971 5511 4.832492 AGGAATAGAAGGAGCAAGGGATA 58.168 43.478 0.00 0.00 0.00 2.59
4972 5512 4.843516 AGGAATAGAAGGAGCAAGGGATAG 59.156 45.833 0.00 0.00 0.00 2.08
4973 5513 4.595350 GGAATAGAAGGAGCAAGGGATAGT 59.405 45.833 0.00 0.00 0.00 2.12
4974 5514 5.072464 GGAATAGAAGGAGCAAGGGATAGTT 59.928 44.000 0.00 0.00 0.00 2.24
4975 5515 6.270231 GGAATAGAAGGAGCAAGGGATAGTTA 59.730 42.308 0.00 0.00 0.00 2.24
4976 5516 7.037945 GGAATAGAAGGAGCAAGGGATAGTTAT 60.038 40.741 0.00 0.00 0.00 1.89
4977 5517 8.974292 AATAGAAGGAGCAAGGGATAGTTATA 57.026 34.615 0.00 0.00 0.00 0.98
4978 5518 6.926630 AGAAGGAGCAAGGGATAGTTATAG 57.073 41.667 0.00 0.00 0.00 1.31
4979 5519 6.625267 AGAAGGAGCAAGGGATAGTTATAGA 58.375 40.000 0.00 0.00 0.00 1.98
4980 5520 6.495526 AGAAGGAGCAAGGGATAGTTATAGAC 59.504 42.308 0.00 0.00 0.00 2.59
4981 5521 5.716979 AGGAGCAAGGGATAGTTATAGACA 58.283 41.667 0.00 0.00 0.00 3.41
4982 5522 5.540719 AGGAGCAAGGGATAGTTATAGACAC 59.459 44.000 0.00 0.00 0.00 3.67
4983 5523 5.540719 GGAGCAAGGGATAGTTATAGACACT 59.459 44.000 0.00 0.00 0.00 3.55
4984 5524 6.412362 AGCAAGGGATAGTTATAGACACTG 57.588 41.667 0.00 0.00 0.00 3.66
4985 5525 5.305644 AGCAAGGGATAGTTATAGACACTGG 59.694 44.000 0.00 0.00 0.00 4.00
4986 5526 5.542779 CAAGGGATAGTTATAGACACTGGC 58.457 45.833 0.00 0.00 0.00 4.85
4987 5527 3.827302 AGGGATAGTTATAGACACTGGCG 59.173 47.826 0.00 0.00 0.00 5.69
4988 5528 3.056749 GGGATAGTTATAGACACTGGCGG 60.057 52.174 0.00 0.00 0.00 6.13
4989 5529 3.825014 GGATAGTTATAGACACTGGCGGA 59.175 47.826 0.00 0.00 0.00 5.54
4990 5530 4.082679 GGATAGTTATAGACACTGGCGGAG 60.083 50.000 0.00 0.00 0.00 4.63
5036 5576 3.614698 CGCCCAGCCCAGCAAAAA 61.615 61.111 0.00 0.00 0.00 1.94
5037 5577 2.946346 CGCCCAGCCCAGCAAAAAT 61.946 57.895 0.00 0.00 0.00 1.82
5038 5578 1.376295 GCCCAGCCCAGCAAAAATG 60.376 57.895 0.00 0.00 0.00 2.32
5039 5579 1.297364 CCCAGCCCAGCAAAAATGG 59.703 57.895 0.00 0.00 37.58 3.16
5047 5587 3.986996 CCAGCAAAAATGGGAAAGGAT 57.013 42.857 0.00 0.00 33.94 3.24
5048 5588 3.602483 CCAGCAAAAATGGGAAAGGATG 58.398 45.455 0.00 0.00 33.94 3.51
5049 5589 3.261390 CCAGCAAAAATGGGAAAGGATGA 59.739 43.478 0.00 0.00 33.94 2.92
5050 5590 4.501071 CAGCAAAAATGGGAAAGGATGAG 58.499 43.478 0.00 0.00 0.00 2.90
5051 5591 4.221262 CAGCAAAAATGGGAAAGGATGAGA 59.779 41.667 0.00 0.00 0.00 3.27
5052 5592 5.028131 AGCAAAAATGGGAAAGGATGAGAT 58.972 37.500 0.00 0.00 0.00 2.75
5053 5593 5.105064 AGCAAAAATGGGAAAGGATGAGATG 60.105 40.000 0.00 0.00 0.00 2.90
5054 5594 5.105228 GCAAAAATGGGAAAGGATGAGATGA 60.105 40.000 0.00 0.00 0.00 2.92
5055 5595 6.574859 GCAAAAATGGGAAAGGATGAGATGAA 60.575 38.462 0.00 0.00 0.00 2.57
5056 5596 7.388437 CAAAAATGGGAAAGGATGAGATGAAA 58.612 34.615 0.00 0.00 0.00 2.69
5057 5597 7.744678 AAAATGGGAAAGGATGAGATGAAAT 57.255 32.000 0.00 0.00 0.00 2.17
5058 5598 7.744678 AAATGGGAAAGGATGAGATGAAATT 57.255 32.000 0.00 0.00 0.00 1.82
5059 5599 7.744678 AATGGGAAAGGATGAGATGAAATTT 57.255 32.000 0.00 0.00 0.00 1.82
5060 5600 6.534475 TGGGAAAGGATGAGATGAAATTTG 57.466 37.500 0.00 0.00 0.00 2.32
5061 5601 5.422970 TGGGAAAGGATGAGATGAAATTTGG 59.577 40.000 0.00 0.00 0.00 3.28
5062 5602 5.163374 GGGAAAGGATGAGATGAAATTTGGG 60.163 44.000 0.00 0.00 0.00 4.12
5063 5603 5.349061 AAAGGATGAGATGAAATTTGGGC 57.651 39.130 0.00 0.00 0.00 5.36
5064 5604 3.303049 AGGATGAGATGAAATTTGGGCC 58.697 45.455 0.00 0.00 0.00 5.80
5065 5605 3.052338 AGGATGAGATGAAATTTGGGCCT 60.052 43.478 4.53 0.00 0.00 5.19
5066 5606 3.708121 GGATGAGATGAAATTTGGGCCTT 59.292 43.478 4.53 0.00 0.00 4.35
5067 5607 4.895297 GGATGAGATGAAATTTGGGCCTTA 59.105 41.667 4.53 0.00 0.00 2.69
5068 5608 5.363580 GGATGAGATGAAATTTGGGCCTTAA 59.636 40.000 4.53 0.00 0.00 1.85
5069 5609 5.920193 TGAGATGAAATTTGGGCCTTAAG 57.080 39.130 4.53 0.00 0.00 1.85
5070 5610 5.332743 TGAGATGAAATTTGGGCCTTAAGT 58.667 37.500 4.53 0.00 0.00 2.24
5071 5611 5.185635 TGAGATGAAATTTGGGCCTTAAGTG 59.814 40.000 4.53 0.00 0.00 3.16
5072 5612 5.086621 AGATGAAATTTGGGCCTTAAGTGT 58.913 37.500 4.53 0.00 0.00 3.55
5073 5613 6.252995 AGATGAAATTTGGGCCTTAAGTGTA 58.747 36.000 4.53 0.00 0.00 2.90
5074 5614 6.723977 AGATGAAATTTGGGCCTTAAGTGTAA 59.276 34.615 4.53 0.00 0.00 2.41
5075 5615 6.926630 TGAAATTTGGGCCTTAAGTGTAAT 57.073 33.333 4.53 0.00 0.00 1.89
5076 5616 7.309770 TGAAATTTGGGCCTTAAGTGTAATT 57.690 32.000 4.53 0.00 0.00 1.40
5077 5617 7.740805 TGAAATTTGGGCCTTAAGTGTAATTT 58.259 30.769 4.53 6.30 0.00 1.82
5078 5618 7.875554 TGAAATTTGGGCCTTAAGTGTAATTTC 59.124 33.333 4.53 19.01 39.43 2.17
5079 5619 7.553504 AATTTGGGCCTTAAGTGTAATTTCT 57.446 32.000 4.53 0.00 0.00 2.52
5080 5620 6.987403 TTTGGGCCTTAAGTGTAATTTCTT 57.013 33.333 4.53 0.00 0.00 2.52
5081 5621 8.658840 ATTTGGGCCTTAAGTGTAATTTCTTA 57.341 30.769 4.53 0.00 0.00 2.10
5082 5622 7.696992 TTGGGCCTTAAGTGTAATTTCTTAG 57.303 36.000 4.53 0.00 0.00 2.18
5083 5623 6.786122 TGGGCCTTAAGTGTAATTTCTTAGT 58.214 36.000 4.53 0.00 0.00 2.24
5084 5624 6.882678 TGGGCCTTAAGTGTAATTTCTTAGTC 59.117 38.462 4.53 0.00 0.00 2.59
5085 5625 6.318144 GGGCCTTAAGTGTAATTTCTTAGTCC 59.682 42.308 0.84 0.00 0.00 3.85
5086 5626 6.036844 GGCCTTAAGTGTAATTTCTTAGTCCG 59.963 42.308 0.00 0.00 0.00 4.79
5087 5627 6.036844 GCCTTAAGTGTAATTTCTTAGTCCGG 59.963 42.308 0.00 0.00 0.00 5.14
5088 5628 6.036844 CCTTAAGTGTAATTTCTTAGTCCGGC 59.963 42.308 0.00 0.00 0.00 6.13
5089 5629 3.870274 AGTGTAATTTCTTAGTCCGGCC 58.130 45.455 0.00 0.00 0.00 6.13
5090 5630 2.941064 GTGTAATTTCTTAGTCCGGCCC 59.059 50.000 0.00 0.00 0.00 5.80
5091 5631 2.207590 GTAATTTCTTAGTCCGGCCCG 58.792 52.381 0.00 0.00 0.00 6.13
5092 5632 0.746923 AATTTCTTAGTCCGGCCCGC 60.747 55.000 0.00 0.00 0.00 6.13
5093 5633 2.604299 ATTTCTTAGTCCGGCCCGCC 62.604 60.000 0.00 0.00 0.00 6.13
5103 5643 3.238497 GGCCCGCCCAACCTTTTT 61.238 61.111 0.00 0.00 0.00 1.94
5104 5644 2.342279 GCCCGCCCAACCTTTTTC 59.658 61.111 0.00 0.00 0.00 2.29
5105 5645 3.056458 CCCGCCCAACCTTTTTCC 58.944 61.111 0.00 0.00 0.00 3.13
5106 5646 1.533033 CCCGCCCAACCTTTTTCCT 60.533 57.895 0.00 0.00 0.00 3.36
5107 5647 1.665442 CCGCCCAACCTTTTTCCTG 59.335 57.895 0.00 0.00 0.00 3.86
5108 5648 1.112916 CCGCCCAACCTTTTTCCTGT 61.113 55.000 0.00 0.00 0.00 4.00
5109 5649 1.611519 CGCCCAACCTTTTTCCTGTA 58.388 50.000 0.00 0.00 0.00 2.74
5110 5650 1.539827 CGCCCAACCTTTTTCCTGTAG 59.460 52.381 0.00 0.00 0.00 2.74
5111 5651 1.272490 GCCCAACCTTTTTCCTGTAGC 59.728 52.381 0.00 0.00 0.00 3.58
5112 5652 2.876581 CCCAACCTTTTTCCTGTAGCT 58.123 47.619 0.00 0.00 0.00 3.32
5113 5653 2.820197 CCCAACCTTTTTCCTGTAGCTC 59.180 50.000 0.00 0.00 0.00 4.09
5114 5654 3.498661 CCCAACCTTTTTCCTGTAGCTCT 60.499 47.826 0.00 0.00 0.00 4.09
5115 5655 3.503748 CCAACCTTTTTCCTGTAGCTCTG 59.496 47.826 0.00 0.00 0.00 3.35
5116 5656 4.137543 CAACCTTTTTCCTGTAGCTCTGT 58.862 43.478 0.00 0.00 0.00 3.41
5117 5657 4.009370 ACCTTTTTCCTGTAGCTCTGTC 57.991 45.455 0.00 0.00 0.00 3.51
5118 5658 3.391296 ACCTTTTTCCTGTAGCTCTGTCA 59.609 43.478 0.00 0.00 0.00 3.58
5119 5659 3.748568 CCTTTTTCCTGTAGCTCTGTCAC 59.251 47.826 0.00 0.00 0.00 3.67
5120 5660 4.503991 CCTTTTTCCTGTAGCTCTGTCACT 60.504 45.833 0.00 0.00 0.00 3.41
5121 5661 3.667497 TTTCCTGTAGCTCTGTCACTG 57.333 47.619 0.00 0.00 0.00 3.66
5122 5662 1.550327 TCCTGTAGCTCTGTCACTGG 58.450 55.000 0.00 0.00 33.80 4.00
5123 5663 1.203063 TCCTGTAGCTCTGTCACTGGT 60.203 52.381 8.76 0.00 34.09 4.00
5124 5664 1.620819 CCTGTAGCTCTGTCACTGGTT 59.379 52.381 0.00 0.00 0.00 3.67
5125 5665 2.826128 CCTGTAGCTCTGTCACTGGTTA 59.174 50.000 0.00 0.00 0.00 2.85
5139 5692 3.068165 CACTGGTTATAGAGTCATGCGGA 59.932 47.826 0.00 0.00 0.00 5.54
5189 5742 7.106439 TCTCAAGAGAAGTAGCAAATCTAGG 57.894 40.000 0.00 0.00 33.91 3.02
5215 5768 6.428385 AAGAATGAGCCTCAAAATTACTCG 57.572 37.500 0.00 0.00 0.00 4.18
5253 5806 0.250467 ACATGCACGCCTCAAACTCT 60.250 50.000 0.00 0.00 0.00 3.24
5263 5816 2.549778 GCCTCAAACTCTGCTCTTCTGT 60.550 50.000 0.00 0.00 0.00 3.41
5325 5879 7.088905 CAGCTTCTTCTGCAATGTCTTTAATT 58.911 34.615 0.00 0.00 0.00 1.40
5336 5890 4.274602 TGTCTTTAATTACCGACTGGCA 57.725 40.909 12.17 0.00 39.70 4.92
5337 5891 4.643463 TGTCTTTAATTACCGACTGGCAA 58.357 39.130 12.17 0.00 39.70 4.52
5343 5897 0.174845 TTACCGACTGGCAATCCGAG 59.825 55.000 4.71 0.00 39.70 4.63
5373 5931 4.006319 GCAGATGATATTTGCCTAGGTCC 58.994 47.826 11.31 0.00 31.79 4.46
5384 5942 0.471617 CCTAGGTCCAGAGCCAATGG 59.528 60.000 0.00 0.00 39.33 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
274 281 2.030185 CCTAAGCACCGCTACGATATGT 60.030 50.000 0.00 0.00 38.25 2.29
422 429 2.039348 AGTACCAAACATACGGCACCTT 59.961 45.455 0.00 0.00 0.00 3.50
433 440 2.610976 CGACCGATCCAAGTACCAAACA 60.611 50.000 0.00 0.00 0.00 2.83
473 480 1.867166 TGACAACGCGGTTGATGTAA 58.133 45.000 22.26 6.38 45.28 2.41
550 557 4.821260 ACGCAAGATTATGGTGATGCATAA 59.179 37.500 0.00 0.00 43.62 1.90
564 571 3.581024 TTCCTACGTACACGCAAGATT 57.419 42.857 0.85 0.00 44.43 2.40
599 608 2.553685 GGGAAGTTGTTGGGGAACGTAT 60.554 50.000 0.00 0.00 0.00 3.06
705 715 4.950200 TTGGCTGCACCCAATCTT 57.050 50.000 9.51 0.00 39.85 2.40
728 738 3.244457 ACCGCTTTGCTACTTCTACCTTT 60.244 43.478 0.00 0.00 0.00 3.11
742 752 1.586154 ATTTCTCGCCCACCGCTTTG 61.586 55.000 0.00 0.00 36.73 2.77
802 813 6.026947 TCCTTCTTCTTTAGGTCTTTCTCG 57.973 41.667 0.00 0.00 33.15 4.04
805 816 6.211785 TCTCCTCCTTCTTCTTTAGGTCTTTC 59.788 42.308 0.00 0.00 33.15 2.62
863 879 4.165180 GCCTCTATTCTCCTCCTCCTTTTT 59.835 45.833 0.00 0.00 0.00 1.94
864 880 3.714280 GCCTCTATTCTCCTCCTCCTTTT 59.286 47.826 0.00 0.00 0.00 2.27
865 881 3.310954 TGCCTCTATTCTCCTCCTCCTTT 60.311 47.826 0.00 0.00 0.00 3.11
866 882 2.248686 TGCCTCTATTCTCCTCCTCCTT 59.751 50.000 0.00 0.00 0.00 3.36
868 884 2.247358 CTGCCTCTATTCTCCTCCTCC 58.753 57.143 0.00 0.00 0.00 4.30
869 885 1.618343 GCTGCCTCTATTCTCCTCCTC 59.382 57.143 0.00 0.00 0.00 3.71
872 888 0.316841 CGGCTGCCTCTATTCTCCTC 59.683 60.000 17.92 0.00 0.00 3.71
939 965 1.508632 GCGAGTAAAACAGAGCACCA 58.491 50.000 0.00 0.00 0.00 4.17
985 1011 2.434702 GACGTTGGAGGGTGGAAGATAT 59.565 50.000 0.00 0.00 0.00 1.63
1040 1066 1.098712 GGGTCTTGGTCAACAACGCA 61.099 55.000 0.00 0.00 34.76 5.24
1127 1159 4.556942 TTGATGATATGGCTTTTCTGCG 57.443 40.909 0.00 0.00 0.00 5.18
1144 1176 1.068895 CAGAGCAGCTCGAGGATTGAT 59.931 52.381 16.99 0.00 35.36 2.57
1147 1179 1.143620 GCAGAGCAGCTCGAGGATT 59.856 57.895 16.99 0.00 35.36 3.01
1148 1180 2.813901 GCAGAGCAGCTCGAGGAT 59.186 61.111 16.99 0.00 35.36 3.24
1154 1186 2.048784 TGTCACGCAGAGCAGCTC 60.049 61.111 15.25 15.25 0.00 4.09
1535 1568 3.537874 GCCCACGTAGCCGAGGAT 61.538 66.667 0.66 0.00 46.33 3.24
1804 1839 1.676006 CCCACAACTGACACCACTTTC 59.324 52.381 0.00 0.00 0.00 2.62
1807 1842 1.531748 CCCCACAACTGACACCACT 59.468 57.895 0.00 0.00 0.00 4.00
1877 1912 4.450419 GGATTTGCAATCGAATCGATCTCT 59.550 41.667 19.00 0.07 46.30 3.10
1977 2012 3.686726 GTCACCTGATCCAGTGATTTCAC 59.313 47.826 15.58 2.41 46.77 3.18
1982 2017 2.172082 CCATGTCACCTGATCCAGTGAT 59.828 50.000 15.58 1.54 29.69 3.06
2080 2115 7.149973 ACAATCAAAATGTTCATGAGAAGGTG 58.850 34.615 0.00 0.00 33.63 4.00
2081 2116 7.232127 AGACAATCAAAATGTTCATGAGAAGGT 59.768 33.333 0.00 0.00 33.63 3.50
2233 2280 4.371855 TCTACTGCCACAAGTATTCTCG 57.628 45.455 0.00 0.00 32.32 4.04
2239 2286 7.333423 GTCACAATTATTCTACTGCCACAAGTA 59.667 37.037 0.00 0.00 0.00 2.24
2260 2307 0.107643 TGCCGATTCTGGTTGTCACA 59.892 50.000 0.00 0.00 0.00 3.58
2275 2322 4.204891 GATTTCGCGACGGTGCCG 62.205 66.667 9.15 9.29 46.03 5.69
2374 2421 5.238214 GCATCTATCTTCAGAGCCGAAAATT 59.762 40.000 0.00 0.00 0.00 1.82
2404 2451 5.496556 TCAACTGAAACTTCCTTGAGTTGA 58.503 37.500 12.38 12.38 40.81 3.18
2591 2638 9.689976 ATGATGAGAAAGATCGTTATAACTCAG 57.310 33.333 13.56 0.00 36.76 3.35
2602 2649 6.989169 AGGTCCTTAAATGATGAGAAAGATCG 59.011 38.462 0.00 0.00 0.00 3.69
2609 2656 5.441718 AAGCAGGTCCTTAAATGATGAGA 57.558 39.130 0.00 0.00 0.00 3.27
2735 2782 1.485978 GCATTCCCCCTCCTCCTCTAT 60.486 57.143 0.00 0.00 0.00 1.98
2897 2944 6.237996 CGCAGTACTTGTCTTTTGTCAGTAAA 60.238 38.462 0.00 0.00 0.00 2.01
3036 3083 2.699954 TCAAAAGAGGAGGCATTCGTC 58.300 47.619 2.90 2.90 40.25 4.20
3226 3273 4.471904 TGTACCATAGCAGTTGAGAAGG 57.528 45.455 0.00 0.00 0.00 3.46
3429 3476 1.322538 GCGCCAATCCATTCCAAGGT 61.323 55.000 0.00 0.00 0.00 3.50
3437 3484 0.107066 TCACTGATGCGCCAATCCAT 60.107 50.000 4.18 0.00 0.00 3.41
3461 3508 6.597672 TCTGCGTATGTCATTTTATCCTTGTT 59.402 34.615 0.00 0.00 0.00 2.83
3550 3597 0.615331 GGAAGCTCAGTGACCATGGA 59.385 55.000 21.47 0.00 0.00 3.41
3564 3611 1.272147 ACCAGGAATCCAACAGGAAGC 60.272 52.381 0.61 0.00 34.49 3.86
3591 3638 1.056660 TTCCTGAAGGTGGTGAGGAC 58.943 55.000 0.00 0.00 34.24 3.85
3716 3763 2.035442 GGAAGTCCGCAAGCACCTC 61.035 63.158 0.00 0.00 0.00 3.85
3800 3847 1.176527 CATCGGAACCCATTGTTGCT 58.823 50.000 0.00 0.00 42.63 3.91
3844 3891 4.002982 CCAAGAACATCAGATTCGTCCAA 58.997 43.478 0.00 0.00 0.00 3.53
3853 3900 2.354103 CGCTCCTTCCAAGAACATCAGA 60.354 50.000 0.00 0.00 0.00 3.27
3890 3937 3.055530 ACAATGATCTGAAACTCGAGCCT 60.056 43.478 13.61 0.00 0.00 4.58
3891 3938 3.063180 CACAATGATCTGAAACTCGAGCC 59.937 47.826 13.61 2.54 0.00 4.70
3895 3942 4.093850 TCATGCACAATGATCTGAAACTCG 59.906 41.667 0.00 0.00 40.50 4.18
3925 3972 3.233507 ACAACCAAATCCAGATGCAGTT 58.766 40.909 0.00 0.00 0.00 3.16
3933 3980 3.754965 TCAAGAGGACAACCAAATCCAG 58.245 45.455 0.00 0.00 37.47 3.86
3945 3992 2.570135 GGATGCCAAGATCAAGAGGAC 58.430 52.381 0.00 0.00 0.00 3.85
3975 4022 1.000396 GCAAGGTTCCTGAGGGCAT 60.000 57.895 0.00 0.00 0.00 4.40
4042 4089 0.469070 CAGCCTGAATAGCAGCCTCT 59.531 55.000 0.00 0.00 43.50 3.69
4075 4122 2.668550 GGTGTCGGACTGTTGGGC 60.669 66.667 9.88 0.00 0.00 5.36
4130 4177 9.130661 CCAATCAATACCTTAATAATGTGTGGA 57.869 33.333 0.00 0.00 0.00 4.02
4131 4178 7.867403 GCCAATCAATACCTTAATAATGTGTGG 59.133 37.037 0.00 0.00 0.00 4.17
4132 4179 8.632679 AGCCAATCAATACCTTAATAATGTGTG 58.367 33.333 0.00 0.00 0.00 3.82
4133 4180 8.632679 CAGCCAATCAATACCTTAATAATGTGT 58.367 33.333 0.00 0.00 0.00 3.72
4134 4181 8.084073 CCAGCCAATCAATACCTTAATAATGTG 58.916 37.037 0.00 0.00 0.00 3.21
4135 4182 7.784550 ACCAGCCAATCAATACCTTAATAATGT 59.215 33.333 0.00 0.00 0.00 2.71
4136 4183 8.084073 CACCAGCCAATCAATACCTTAATAATG 58.916 37.037 0.00 0.00 0.00 1.90
4137 4184 7.233348 CCACCAGCCAATCAATACCTTAATAAT 59.767 37.037 0.00 0.00 0.00 1.28
4138 4185 6.549364 CCACCAGCCAATCAATACCTTAATAA 59.451 38.462 0.00 0.00 0.00 1.40
4139 4186 6.068010 CCACCAGCCAATCAATACCTTAATA 58.932 40.000 0.00 0.00 0.00 0.98
4166 4260 6.941857 AGTACATTTTGGTTTGGTTTGAAGT 58.058 32.000 0.00 0.00 0.00 3.01
4220 4668 0.319383 AGCAGTCAACGCTGAGACAG 60.319 55.000 0.00 0.00 38.60 3.51
4229 4727 0.506932 CACGGTTACAGCAGTCAACG 59.493 55.000 0.00 0.00 0.00 4.10
4256 4754 5.239525 CGTCCATATGTGTCTATCAGTCTGA 59.760 44.000 4.68 4.68 0.00 3.27
4259 4757 5.239744 ACTCGTCCATATGTGTCTATCAGTC 59.760 44.000 1.24 0.00 0.00 3.51
4260 4758 5.133941 ACTCGTCCATATGTGTCTATCAGT 58.866 41.667 1.24 0.00 0.00 3.41
4261 4759 5.697473 ACTCGTCCATATGTGTCTATCAG 57.303 43.478 1.24 0.00 0.00 2.90
4262 4760 6.465439 AAACTCGTCCATATGTGTCTATCA 57.535 37.500 1.24 0.00 0.00 2.15
4263 4761 7.707035 AGAAAAACTCGTCCATATGTGTCTATC 59.293 37.037 1.24 0.00 0.00 2.08
4264 4762 7.556844 AGAAAAACTCGTCCATATGTGTCTAT 58.443 34.615 1.24 0.00 0.00 1.98
4266 4764 5.794894 AGAAAAACTCGTCCATATGTGTCT 58.205 37.500 1.24 0.00 0.00 3.41
4267 4765 6.369065 AGAAGAAAAACTCGTCCATATGTGTC 59.631 38.462 1.24 0.00 33.38 3.67
4268 4766 6.231211 AGAAGAAAAACTCGTCCATATGTGT 58.769 36.000 1.24 0.00 33.38 3.72
4269 4767 6.727824 AGAAGAAAAACTCGTCCATATGTG 57.272 37.500 1.24 0.00 33.38 3.21
4299 4807 4.385825 GGAGACACAGTTACAACATTCCA 58.614 43.478 0.00 0.00 0.00 3.53
4300 4808 3.432252 CGGAGACACAGTTACAACATTCC 59.568 47.826 0.00 0.00 0.00 3.01
4309 4817 2.291735 TGATACCCCGGAGACACAGTTA 60.292 50.000 0.73 0.00 0.00 2.24
4325 4841 8.086851 ACAACAAAGAAATGGCAAAATGATAC 57.913 30.769 0.00 0.00 0.00 2.24
4330 4846 7.271511 TCTGTACAACAAAGAAATGGCAAAAT 58.728 30.769 0.00 0.00 0.00 1.82
4332 4848 6.214191 TCTGTACAACAAAGAAATGGCAAA 57.786 33.333 0.00 0.00 0.00 3.68
4349 4867 6.490566 AATTTGTTACCATCCGTTCTGTAC 57.509 37.500 0.00 0.00 0.00 2.90
4375 4893 0.586319 AAAACTGTCACACGCCATCG 59.414 50.000 0.00 0.00 42.43 3.84
4381 4899 2.539547 CCAAGAGCAAAACTGTCACACG 60.540 50.000 0.00 0.00 0.00 4.49
4478 5002 1.843368 ACATGGGCAACATCCTTCTG 58.157 50.000 0.00 0.00 37.84 3.02
4487 5014 1.453155 ATCTCACGAACATGGGCAAC 58.547 50.000 0.00 0.00 0.00 4.17
4538 5070 8.552083 TTTGCATAGCTGAATATATACTGTGG 57.448 34.615 0.00 0.00 0.00 4.17
4557 5089 9.733219 CCATTTTATTTGTTTCTGTTTTTGCAT 57.267 25.926 0.00 0.00 0.00 3.96
4568 5100 6.873605 CCCCACTTCTCCATTTTATTTGTTTC 59.126 38.462 0.00 0.00 0.00 2.78
4576 5108 4.717778 TCGATACCCCACTTCTCCATTTTA 59.282 41.667 0.00 0.00 0.00 1.52
4577 5109 3.521937 TCGATACCCCACTTCTCCATTTT 59.478 43.478 0.00 0.00 0.00 1.82
4676 5214 7.011109 GGTGCCACGGCTTAGTATAATATAATG 59.989 40.741 9.92 0.00 42.51 1.90
4677 5215 7.046033 GGTGCCACGGCTTAGTATAATATAAT 58.954 38.462 9.92 0.00 42.51 1.28
4678 5216 6.211986 AGGTGCCACGGCTTAGTATAATATAA 59.788 38.462 9.92 0.00 42.51 0.98
4680 5218 4.530946 AGGTGCCACGGCTTAGTATAATAT 59.469 41.667 9.92 0.00 42.51 1.28
4688 5226 0.741221 GAGAAGGTGCCACGGCTTAG 60.741 60.000 9.92 0.00 42.51 2.18
4695 5233 1.740025 GCTATGTTGAGAAGGTGCCAC 59.260 52.381 0.00 0.00 0.00 5.01
4717 5255 4.286032 GGAGGGGTTTTCTGCCTTAAAAAT 59.714 41.667 0.00 0.00 0.00 1.82
4728 5266 5.494706 TGAACTAATATGGGAGGGGTTTTCT 59.505 40.000 0.00 0.00 0.00 2.52
4769 5307 6.605995 TGGACTATATACGGATGTAGGAATGG 59.394 42.308 15.11 0.00 32.47 3.16
4806 5346 9.511272 GGACAAAGGGAGTATAACTCTTTTTAA 57.489 33.333 6.99 0.00 44.46 1.52
4815 5355 9.682465 AGAATTTTAGGACAAAGGGAGTATAAC 57.318 33.333 0.00 0.00 0.00 1.89
4819 5359 7.523415 ACAAGAATTTTAGGACAAAGGGAGTA 58.477 34.615 0.00 0.00 0.00 2.59
4820 5360 6.373759 ACAAGAATTTTAGGACAAAGGGAGT 58.626 36.000 0.00 0.00 0.00 3.85
4821 5361 6.717084 AGACAAGAATTTTAGGACAAAGGGAG 59.283 38.462 0.00 0.00 0.00 4.30
4822 5362 6.610830 AGACAAGAATTTTAGGACAAAGGGA 58.389 36.000 0.00 0.00 0.00 4.20
4823 5363 6.901081 AGACAAGAATTTTAGGACAAAGGG 57.099 37.500 0.00 0.00 0.00 3.95
4824 5364 9.284968 TCTAAGACAAGAATTTTAGGACAAAGG 57.715 33.333 0.00 0.00 0.00 3.11
4861 5401 9.970395 CATGTTTTAGTATTAGGTACATCCGTA 57.030 33.333 0.00 0.00 41.99 4.02
4862 5402 8.698210 TCATGTTTTAGTATTAGGTACATCCGT 58.302 33.333 0.00 0.00 41.99 4.69
4863 5403 8.975439 GTCATGTTTTAGTATTAGGTACATCCG 58.025 37.037 0.00 0.00 41.99 4.18
4875 5415 9.261180 CGGATGTATCAAGTCATGTTTTAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
4876 5416 8.255206 ACGGATGTATCAAGTCATGTTTTAGTA 58.745 33.333 0.00 0.00 0.00 1.82
4877 5417 7.103641 ACGGATGTATCAAGTCATGTTTTAGT 58.896 34.615 0.00 0.00 0.00 2.24
4878 5418 7.539712 ACGGATGTATCAAGTCATGTTTTAG 57.460 36.000 0.00 0.00 0.00 1.85
4879 5419 9.607988 AATACGGATGTATCAAGTCATGTTTTA 57.392 29.630 0.00 0.00 40.42 1.52
4880 5420 8.506168 AATACGGATGTATCAAGTCATGTTTT 57.494 30.769 0.00 0.00 40.42 2.43
4881 5421 8.506168 AAATACGGATGTATCAAGTCATGTTT 57.494 30.769 0.00 0.00 40.42 2.83
4882 5422 9.261180 CTAAATACGGATGTATCAAGTCATGTT 57.739 33.333 0.00 0.00 40.42 2.71
4883 5423 8.638873 TCTAAATACGGATGTATCAAGTCATGT 58.361 33.333 0.00 0.00 40.42 3.21
4884 5424 8.916654 GTCTAAATACGGATGTATCAAGTCATG 58.083 37.037 0.00 0.00 40.42 3.07
4885 5425 8.638873 TGTCTAAATACGGATGTATCAAGTCAT 58.361 33.333 0.00 0.00 40.42 3.06
4886 5426 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
4887 5427 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
4888 5428 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
4895 5435 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
4896 5436 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
4898 5438 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
4899 5439 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
4907 5447 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4908 5448 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4909 5449 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4910 5450 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4911 5451 7.447238 TCGTCCCAAAATTCTTGTCTTAGATTT 59.553 33.333 0.00 0.00 0.00 2.17
4912 5452 6.940298 TCGTCCCAAAATTCTTGTCTTAGATT 59.060 34.615 0.00 0.00 0.00 2.40
4913 5453 6.472887 TCGTCCCAAAATTCTTGTCTTAGAT 58.527 36.000 0.00 0.00 0.00 1.98
4914 5454 5.860611 TCGTCCCAAAATTCTTGTCTTAGA 58.139 37.500 0.00 0.00 0.00 2.10
4915 5455 6.348540 CCTTCGTCCCAAAATTCTTGTCTTAG 60.349 42.308 0.00 0.00 0.00 2.18
4916 5456 5.472137 CCTTCGTCCCAAAATTCTTGTCTTA 59.528 40.000 0.00 0.00 0.00 2.10
4917 5457 4.278419 CCTTCGTCCCAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
4918 5458 3.821033 CCTTCGTCCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
4919 5459 3.057526 CCCTTCGTCCCAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
4920 5460 2.890945 CCCTTCGTCCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
4921 5461 3.153919 TCCCTTCGTCCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
4922 5462 3.181433 ACTCCCTTCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
4923 5463 2.375509 ACTCCCTTCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
4924 5464 2.791655 ACTCCCTTCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
4925 5465 2.971901 ACTCCCTTCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4926 5466 4.586306 AATACTCCCTTCGTCCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
4927 5467 4.376225 AAATACTCCCTTCGTCCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
4928 5468 4.080751 CCTAAATACTCCCTTCGTCCCAAA 60.081 45.833 0.00 0.00 0.00 3.28
4929 5469 3.453353 CCTAAATACTCCCTTCGTCCCAA 59.547 47.826 0.00 0.00 0.00 4.12
4930 5470 3.036091 CCTAAATACTCCCTTCGTCCCA 58.964 50.000 0.00 0.00 0.00 4.37
4931 5471 3.303049 TCCTAAATACTCCCTTCGTCCC 58.697 50.000 0.00 0.00 0.00 4.46
4932 5472 5.548181 ATTCCTAAATACTCCCTTCGTCC 57.452 43.478 0.00 0.00 0.00 4.79
4933 5473 7.521871 TCTATTCCTAAATACTCCCTTCGTC 57.478 40.000 0.00 0.00 0.00 4.20
4934 5474 7.015389 CCTTCTATTCCTAAATACTCCCTTCGT 59.985 40.741 0.00 0.00 0.00 3.85
4935 5475 7.232941 TCCTTCTATTCCTAAATACTCCCTTCG 59.767 40.741 0.00 0.00 0.00 3.79
4936 5476 8.493787 TCCTTCTATTCCTAAATACTCCCTTC 57.506 38.462 0.00 0.00 0.00 3.46
4937 5477 7.016760 GCTCCTTCTATTCCTAAATACTCCCTT 59.983 40.741 0.00 0.00 0.00 3.95
4938 5478 6.499000 GCTCCTTCTATTCCTAAATACTCCCT 59.501 42.308 0.00 0.00 0.00 4.20
4939 5479 6.270231 TGCTCCTTCTATTCCTAAATACTCCC 59.730 42.308 0.00 0.00 0.00 4.30
4940 5480 7.304497 TGCTCCTTCTATTCCTAAATACTCC 57.696 40.000 0.00 0.00 0.00 3.85
4941 5481 7.875554 CCTTGCTCCTTCTATTCCTAAATACTC 59.124 40.741 0.00 0.00 0.00 2.59
4942 5482 7.202139 CCCTTGCTCCTTCTATTCCTAAATACT 60.202 40.741 0.00 0.00 0.00 2.12
4943 5483 6.937465 CCCTTGCTCCTTCTATTCCTAAATAC 59.063 42.308 0.00 0.00 0.00 1.89
4954 5494 7.670559 GTCTATAACTATCCCTTGCTCCTTCTA 59.329 40.741 0.00 0.00 0.00 2.10
4958 5498 5.540719 GTGTCTATAACTATCCCTTGCTCCT 59.459 44.000 0.00 0.00 0.00 3.69
4963 5503 5.542779 GCCAGTGTCTATAACTATCCCTTG 58.457 45.833 0.00 0.00 0.00 3.61
4964 5504 4.281182 CGCCAGTGTCTATAACTATCCCTT 59.719 45.833 0.00 0.00 0.00 3.95
4965 5505 3.827302 CGCCAGTGTCTATAACTATCCCT 59.173 47.826 0.00 0.00 0.00 4.20
4966 5506 3.056749 CCGCCAGTGTCTATAACTATCCC 60.057 52.174 0.00 0.00 0.00 3.85
4967 5507 3.825014 TCCGCCAGTGTCTATAACTATCC 59.175 47.826 0.00 0.00 0.00 2.59
4968 5508 4.616373 GCTCCGCCAGTGTCTATAACTATC 60.616 50.000 0.00 0.00 0.00 2.08
4969 5509 3.256136 GCTCCGCCAGTGTCTATAACTAT 59.744 47.826 0.00 0.00 0.00 2.12
4970 5510 2.621998 GCTCCGCCAGTGTCTATAACTA 59.378 50.000 0.00 0.00 0.00 2.24
4971 5511 1.409427 GCTCCGCCAGTGTCTATAACT 59.591 52.381 0.00 0.00 0.00 2.24
4972 5512 1.409427 AGCTCCGCCAGTGTCTATAAC 59.591 52.381 0.00 0.00 0.00 1.89
4973 5513 1.776662 AGCTCCGCCAGTGTCTATAA 58.223 50.000 0.00 0.00 0.00 0.98
4974 5514 1.776662 AAGCTCCGCCAGTGTCTATA 58.223 50.000 0.00 0.00 0.00 1.31
4975 5515 1.683917 CTAAGCTCCGCCAGTGTCTAT 59.316 52.381 0.00 0.00 0.00 1.98
4976 5516 1.103803 CTAAGCTCCGCCAGTGTCTA 58.896 55.000 0.00 0.00 0.00 2.59
4977 5517 1.608717 CCTAAGCTCCGCCAGTGTCT 61.609 60.000 0.00 0.00 0.00 3.41
4978 5518 1.153549 CCTAAGCTCCGCCAGTGTC 60.154 63.158 0.00 0.00 0.00 3.67
4979 5519 2.982130 CCTAAGCTCCGCCAGTGT 59.018 61.111 0.00 0.00 0.00 3.55
4980 5520 2.512515 GCCTAAGCTCCGCCAGTG 60.513 66.667 0.00 0.00 35.50 3.66
4981 5521 2.527951 CTTGCCTAAGCTCCGCCAGT 62.528 60.000 0.00 0.00 40.80 4.00
4982 5522 1.817099 CTTGCCTAAGCTCCGCCAG 60.817 63.158 0.00 0.00 40.80 4.85
4983 5523 2.268920 CTTGCCTAAGCTCCGCCA 59.731 61.111 0.00 0.00 40.80 5.69
4984 5524 2.514824 CCTTGCCTAAGCTCCGCC 60.515 66.667 0.00 0.00 40.80 6.13
4985 5525 3.205536 GCCTTGCCTAAGCTCCGC 61.206 66.667 0.00 0.00 40.80 5.54
4986 5526 2.514824 GGCCTTGCCTAAGCTCCG 60.515 66.667 0.00 0.00 46.69 4.63
5019 5559 2.946346 ATTTTTGCTGGGCTGGGCG 61.946 57.895 0.00 0.00 0.00 6.13
5020 5560 1.376295 CATTTTTGCTGGGCTGGGC 60.376 57.895 0.00 0.00 0.00 5.36
5021 5561 1.297364 CCATTTTTGCTGGGCTGGG 59.703 57.895 0.00 0.00 0.00 4.45
5022 5562 1.297364 CCCATTTTTGCTGGGCTGG 59.703 57.895 0.00 0.00 46.62 4.85
5027 5567 3.261390 TCATCCTTTCCCATTTTTGCTGG 59.739 43.478 0.00 0.00 0.00 4.85
5028 5568 4.221262 TCTCATCCTTTCCCATTTTTGCTG 59.779 41.667 0.00 0.00 0.00 4.41
5029 5569 4.419282 TCTCATCCTTTCCCATTTTTGCT 58.581 39.130 0.00 0.00 0.00 3.91
5030 5570 4.806640 TCTCATCCTTTCCCATTTTTGC 57.193 40.909 0.00 0.00 0.00 3.68
5031 5571 6.534475 TCATCTCATCCTTTCCCATTTTTG 57.466 37.500 0.00 0.00 0.00 2.44
5032 5572 7.557875 TTTCATCTCATCCTTTCCCATTTTT 57.442 32.000 0.00 0.00 0.00 1.94
5033 5573 7.744678 ATTTCATCTCATCCTTTCCCATTTT 57.255 32.000 0.00 0.00 0.00 1.82
5034 5574 7.744678 AATTTCATCTCATCCTTTCCCATTT 57.255 32.000 0.00 0.00 0.00 2.32
5035 5575 7.365295 CCAAATTTCATCTCATCCTTTCCCATT 60.365 37.037 0.00 0.00 0.00 3.16
5036 5576 6.099269 CCAAATTTCATCTCATCCTTTCCCAT 59.901 38.462 0.00 0.00 0.00 4.00
5037 5577 5.422970 CCAAATTTCATCTCATCCTTTCCCA 59.577 40.000 0.00 0.00 0.00 4.37
5038 5578 5.163374 CCCAAATTTCATCTCATCCTTTCCC 60.163 44.000 0.00 0.00 0.00 3.97
5039 5579 5.683249 GCCCAAATTTCATCTCATCCTTTCC 60.683 44.000 0.00 0.00 0.00 3.13
5040 5580 5.354767 GCCCAAATTTCATCTCATCCTTTC 58.645 41.667 0.00 0.00 0.00 2.62
5041 5581 4.162888 GGCCCAAATTTCATCTCATCCTTT 59.837 41.667 0.00 0.00 0.00 3.11
5042 5582 3.708121 GGCCCAAATTTCATCTCATCCTT 59.292 43.478 0.00 0.00 0.00 3.36
5043 5583 3.052338 AGGCCCAAATTTCATCTCATCCT 60.052 43.478 0.00 0.00 0.00 3.24
5044 5584 3.303049 AGGCCCAAATTTCATCTCATCC 58.697 45.455 0.00 0.00 0.00 3.51
5045 5585 6.097412 ACTTAAGGCCCAAATTTCATCTCATC 59.903 38.462 7.53 0.00 0.00 2.92
5046 5586 5.960202 ACTTAAGGCCCAAATTTCATCTCAT 59.040 36.000 7.53 0.00 0.00 2.90
5047 5587 5.185635 CACTTAAGGCCCAAATTTCATCTCA 59.814 40.000 7.53 0.00 0.00 3.27
5048 5588 5.185828 ACACTTAAGGCCCAAATTTCATCTC 59.814 40.000 7.53 0.00 0.00 2.75
5049 5589 5.086621 ACACTTAAGGCCCAAATTTCATCT 58.913 37.500 7.53 0.00 0.00 2.90
5050 5590 5.405935 ACACTTAAGGCCCAAATTTCATC 57.594 39.130 7.53 0.00 0.00 2.92
5051 5591 6.926630 TTACACTTAAGGCCCAAATTTCAT 57.073 33.333 7.53 0.00 0.00 2.57
5052 5592 6.926630 ATTACACTTAAGGCCCAAATTTCA 57.073 33.333 7.53 0.00 0.00 2.69
5053 5593 8.094548 AGAAATTACACTTAAGGCCCAAATTTC 58.905 33.333 21.21 21.21 40.12 2.17
5054 5594 7.973402 AGAAATTACACTTAAGGCCCAAATTT 58.027 30.769 7.53 10.60 0.00 1.82
5055 5595 7.553504 AGAAATTACACTTAAGGCCCAAATT 57.446 32.000 7.53 3.17 0.00 1.82
5056 5596 7.553504 AAGAAATTACACTTAAGGCCCAAAT 57.446 32.000 7.53 0.00 0.00 2.32
5057 5597 6.987403 AAGAAATTACACTTAAGGCCCAAA 57.013 33.333 7.53 0.00 0.00 3.28
5058 5598 7.235804 ACTAAGAAATTACACTTAAGGCCCAA 58.764 34.615 7.53 0.00 0.00 4.12
5059 5599 6.786122 ACTAAGAAATTACACTTAAGGCCCA 58.214 36.000 7.53 0.00 0.00 5.36
5060 5600 6.318144 GGACTAAGAAATTACACTTAAGGCCC 59.682 42.308 7.53 0.00 0.00 5.80
5061 5601 6.036844 CGGACTAAGAAATTACACTTAAGGCC 59.963 42.308 7.53 0.00 0.00 5.19
5062 5602 6.036844 CCGGACTAAGAAATTACACTTAAGGC 59.963 42.308 7.53 0.00 0.00 4.35
5063 5603 6.036844 GCCGGACTAAGAAATTACACTTAAGG 59.963 42.308 5.05 0.00 0.00 2.69
5064 5604 6.036844 GGCCGGACTAAGAAATTACACTTAAG 59.963 42.308 5.05 0.00 0.00 1.85
5065 5605 5.876460 GGCCGGACTAAGAAATTACACTTAA 59.124 40.000 5.05 0.00 0.00 1.85
5066 5606 5.422145 GGCCGGACTAAGAAATTACACTTA 58.578 41.667 5.05 0.00 0.00 2.24
5067 5607 4.259356 GGCCGGACTAAGAAATTACACTT 58.741 43.478 5.05 0.00 0.00 3.16
5068 5608 3.370209 GGGCCGGACTAAGAAATTACACT 60.370 47.826 7.57 0.00 0.00 3.55
5069 5609 2.941064 GGGCCGGACTAAGAAATTACAC 59.059 50.000 7.57 0.00 0.00 2.90
5070 5610 2.419021 CGGGCCGGACTAAGAAATTACA 60.419 50.000 20.56 0.00 0.00 2.41
5071 5611 2.207590 CGGGCCGGACTAAGAAATTAC 58.792 52.381 20.56 0.00 0.00 1.89
5072 5612 1.473788 GCGGGCCGGACTAAGAAATTA 60.474 52.381 29.48 0.00 0.00 1.40
5073 5613 0.746923 GCGGGCCGGACTAAGAAATT 60.747 55.000 29.48 0.00 0.00 1.82
5074 5614 1.153229 GCGGGCCGGACTAAGAAAT 60.153 57.895 29.48 0.00 0.00 2.17
5075 5615 2.266689 GCGGGCCGGACTAAGAAA 59.733 61.111 29.48 0.00 0.00 2.52
5076 5616 3.777910 GGCGGGCCGGACTAAGAA 61.778 66.667 29.48 0.00 0.00 2.52
5086 5626 3.234630 GAAAAAGGTTGGGCGGGCC 62.235 63.158 14.65 14.65 0.00 5.80
5087 5627 2.342279 GAAAAAGGTTGGGCGGGC 59.658 61.111 0.00 0.00 0.00 6.13
5088 5628 1.533033 AGGAAAAAGGTTGGGCGGG 60.533 57.895 0.00 0.00 0.00 6.13
5089 5629 1.112916 ACAGGAAAAAGGTTGGGCGG 61.113 55.000 0.00 0.00 0.00 6.13
5090 5630 1.539827 CTACAGGAAAAAGGTTGGGCG 59.460 52.381 0.00 0.00 0.00 6.13
5091 5631 1.272490 GCTACAGGAAAAAGGTTGGGC 59.728 52.381 0.00 0.00 0.00 5.36
5092 5632 2.820197 GAGCTACAGGAAAAAGGTTGGG 59.180 50.000 0.00 0.00 0.00 4.12
5093 5633 3.503748 CAGAGCTACAGGAAAAAGGTTGG 59.496 47.826 0.00 0.00 0.00 3.77
5094 5634 4.137543 ACAGAGCTACAGGAAAAAGGTTG 58.862 43.478 0.00 0.00 0.00 3.77
5095 5635 4.141482 TGACAGAGCTACAGGAAAAAGGTT 60.141 41.667 0.00 0.00 0.00 3.50
5096 5636 3.391296 TGACAGAGCTACAGGAAAAAGGT 59.609 43.478 0.00 0.00 0.00 3.50
5097 5637 3.748568 GTGACAGAGCTACAGGAAAAAGG 59.251 47.826 0.00 0.00 0.00 3.11
5098 5638 4.450419 CAGTGACAGAGCTACAGGAAAAAG 59.550 45.833 0.00 0.00 0.00 2.27
5099 5639 4.380531 CAGTGACAGAGCTACAGGAAAAA 58.619 43.478 0.00 0.00 0.00 1.94
5100 5640 3.244215 CCAGTGACAGAGCTACAGGAAAA 60.244 47.826 0.00 0.00 0.00 2.29
5101 5641 2.300152 CCAGTGACAGAGCTACAGGAAA 59.700 50.000 0.00 0.00 0.00 3.13
5102 5642 1.895798 CCAGTGACAGAGCTACAGGAA 59.104 52.381 0.00 0.00 0.00 3.36
5103 5643 1.203063 ACCAGTGACAGAGCTACAGGA 60.203 52.381 2.31 0.00 0.00 3.86
5104 5644 1.261480 ACCAGTGACAGAGCTACAGG 58.739 55.000 0.00 0.00 0.00 4.00
5105 5645 4.727507 ATAACCAGTGACAGAGCTACAG 57.272 45.455 0.00 0.00 0.00 2.74
5106 5646 5.506708 TCTATAACCAGTGACAGAGCTACA 58.493 41.667 0.00 0.00 0.00 2.74
5107 5647 5.591067 ACTCTATAACCAGTGACAGAGCTAC 59.409 44.000 0.00 0.00 34.25 3.58
5108 5648 5.756918 ACTCTATAACCAGTGACAGAGCTA 58.243 41.667 0.00 0.00 34.25 3.32
5109 5649 4.605183 ACTCTATAACCAGTGACAGAGCT 58.395 43.478 0.00 0.00 34.25 4.09
5110 5650 4.399618 TGACTCTATAACCAGTGACAGAGC 59.600 45.833 0.00 0.00 34.25 4.09
5111 5651 6.502652 CATGACTCTATAACCAGTGACAGAG 58.497 44.000 0.00 0.00 36.45 3.35
5112 5652 5.163509 GCATGACTCTATAACCAGTGACAGA 60.164 44.000 0.00 0.00 0.00 3.41
5113 5653 5.046529 GCATGACTCTATAACCAGTGACAG 58.953 45.833 0.00 0.00 0.00 3.51
5114 5654 4.440112 CGCATGACTCTATAACCAGTGACA 60.440 45.833 0.00 0.00 0.00 3.58
5115 5655 4.045104 CGCATGACTCTATAACCAGTGAC 58.955 47.826 0.00 0.00 0.00 3.67
5116 5656 3.068165 CCGCATGACTCTATAACCAGTGA 59.932 47.826 0.00 0.00 0.00 3.41
5117 5657 3.068165 TCCGCATGACTCTATAACCAGTG 59.932 47.826 0.00 0.00 0.00 3.66
5118 5658 3.296854 TCCGCATGACTCTATAACCAGT 58.703 45.455 0.00 0.00 0.00 4.00
5119 5659 3.319405 ACTCCGCATGACTCTATAACCAG 59.681 47.826 0.00 0.00 0.00 4.00
5120 5660 3.068165 CACTCCGCATGACTCTATAACCA 59.932 47.826 0.00 0.00 0.00 3.67
5121 5661 3.068307 ACACTCCGCATGACTCTATAACC 59.932 47.826 0.00 0.00 0.00 2.85
5122 5662 4.202020 TGACACTCCGCATGACTCTATAAC 60.202 45.833 0.00 0.00 0.00 1.89
5123 5663 3.951680 TGACACTCCGCATGACTCTATAA 59.048 43.478 0.00 0.00 0.00 0.98
5124 5664 3.551846 TGACACTCCGCATGACTCTATA 58.448 45.455 0.00 0.00 0.00 1.31
5125 5665 2.379005 TGACACTCCGCATGACTCTAT 58.621 47.619 0.00 0.00 0.00 1.98
5139 5692 2.143122 CGCTATGTGTGGTTTGACACT 58.857 47.619 0.00 0.00 45.52 3.55
5156 5709 2.564947 ACTTCTCTTGAGATTGGTCGCT 59.435 45.455 0.82 0.00 0.00 4.93
5189 5742 7.905493 CGAGTAATTTTGAGGCTCATTCTTTAC 59.095 37.037 19.50 20.33 0.00 2.01
5215 5768 5.846473 GCATGTTTCGTTTTGAGAGTAGAAC 59.154 40.000 0.00 0.00 0.00 3.01
5253 5806 6.365970 AAGGAGATTAAAGACAGAAGAGCA 57.634 37.500 0.00 0.00 0.00 4.26
5325 5879 1.672854 CCTCGGATTGCCAGTCGGTA 61.673 60.000 0.00 0.00 33.28 4.02
5336 5890 0.543277 TCTGCTCATTGCCTCGGATT 59.457 50.000 0.00 0.00 42.00 3.01
5337 5891 0.763652 ATCTGCTCATTGCCTCGGAT 59.236 50.000 0.00 0.00 42.00 4.18
5343 5897 4.235360 GCAAATATCATCTGCTCATTGCC 58.765 43.478 0.00 0.00 42.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.