Multiple sequence alignment - TraesCS5A01G380500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G380500 chr5A 100.000 4161 0 0 1 4161 577949762 577945602 0.000000e+00 7685.0
1 TraesCS5A01G380500 chr5D 88.075 3589 219 98 208 3679 458916225 458912729 0.000000e+00 4063.0
2 TraesCS5A01G380500 chr5D 90.741 216 18 2 1 215 16892381 16892167 1.890000e-73 287.0
3 TraesCS5A01G380500 chr5D 90.952 210 17 2 1 209 336973429 336973637 8.810000e-72 281.0
4 TraesCS5A01G380500 chr5D 83.784 148 18 5 4015 4161 458911712 458911570 7.260000e-28 135.0
5 TraesCS5A01G380500 chr5B 89.922 1786 92 31 1763 3511 562966333 562964599 0.000000e+00 2220.0
6 TraesCS5A01G380500 chr5B 82.862 1628 123 59 234 1763 562968061 562966492 0.000000e+00 1317.0
7 TraesCS5A01G380500 chr5B 90.952 210 17 2 1 209 230244595 230244387 8.810000e-72 281.0
8 TraesCS5A01G380500 chr5B 90.952 210 17 2 1 209 508255544 508255752 8.810000e-72 281.0
9 TraesCS5A01G380500 chr5B 90.566 212 18 2 1 211 493672128 493672338 3.170000e-71 279.0
10 TraesCS5A01G380500 chr5B 92.241 116 9 0 3696 3811 354169336 354169451 9.250000e-37 165.0
11 TraesCS5A01G380500 chr4B 92.453 212 13 3 1 211 377690006 377689797 2.430000e-77 300.0
12 TraesCS5A01G380500 chr1A 90.952 210 17 2 1 209 450174352 450174144 8.810000e-72 281.0
13 TraesCS5A01G380500 chr1A 91.525 118 8 1 3695 3812 474447166 474447281 1.200000e-35 161.0
14 TraesCS5A01G380500 chr1A 79.503 161 25 5 3805 3965 27202860 27202708 1.580000e-19 108.0
15 TraesCS5A01G380500 chr4A 90.952 210 16 3 1 209 580294572 580294365 3.170000e-71 279.0
16 TraesCS5A01G380500 chr2B 89.862 217 19 3 1 216 478654280 478654066 4.100000e-70 276.0
17 TraesCS5A01G380500 chr2B 92.920 113 8 0 3696 3808 167467786 167467674 9.250000e-37 165.0
18 TraesCS5A01G380500 chr7B 97.087 103 3 0 3695 3797 201497290 201497392 1.540000e-39 174.0
19 TraesCS5A01G380500 chr7A 94.495 109 6 0 3696 3804 138162444 138162552 7.150000e-38 169.0
20 TraesCS5A01G380500 chr3A 92.373 118 8 1 3691 3808 265545146 265545030 2.570000e-37 167.0
21 TraesCS5A01G380500 chrUn 92.920 113 8 0 3691 3803 223726763 223726651 9.250000e-37 165.0
22 TraesCS5A01G380500 chrUn 94.393 107 6 0 3691 3797 308507521 308507627 9.250000e-37 165.0
23 TraesCS5A01G380500 chrUn 94.393 107 6 0 3691 3797 308511608 308511714 9.250000e-37 165.0
24 TraesCS5A01G380500 chr2D 100.000 36 0 0 322 357 565811110 565811075 2.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G380500 chr5A 577945602 577949762 4160 True 7685.0 7685 100.0000 1 4161 1 chr5A.!!$R1 4160
1 TraesCS5A01G380500 chr5D 458911570 458916225 4655 True 2099.0 4063 85.9295 208 4161 2 chr5D.!!$R2 3953
2 TraesCS5A01G380500 chr5B 562964599 562968061 3462 True 1768.5 2220 86.3920 234 3511 2 chr5B.!!$R2 3277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 774 0.178944 TCCGAGGGAGAGTTGGTTGA 60.179 55.0 0.00 0.0 0.00 3.18 F
2090 2388 0.320073 CCACGAAGACGGCTTTGGTA 60.320 55.0 22.42 0.0 44.46 3.25 F
2677 2995 0.317854 TCGACGGATGATGATGACGC 60.318 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2589 0.098200 CTCGTCGCGTACCTGAATGA 59.902 55.0 5.77 0.0 0.0 2.57 R
3157 3488 0.319040 CATGGATGGACGACGGCTAG 60.319 60.0 0.00 0.0 0.0 3.42 R
3969 4342 1.024536 ACTGTACCCCTATCCCCACT 58.975 55.0 0.00 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.739049 AAACAACACCATGTGGGCG 59.261 52.632 3.77 0.00 42.05 6.13
19 20 1.743321 AAACAACACCATGTGGGCGG 61.743 55.000 3.77 0.00 42.05 6.13
20 21 4.054825 CAACACCATGTGGGCGGC 62.055 66.667 0.00 0.00 42.05 6.53
35 36 3.228759 GGCGGCCAATGGATGCAT 61.229 61.111 15.62 0.00 0.00 3.96
36 37 2.028484 GCGGCCAATGGATGCATG 59.972 61.111 2.46 0.00 0.00 4.06
37 38 2.732016 CGGCCAATGGATGCATGG 59.268 61.111 2.46 0.11 37.29 3.66
38 39 1.829096 CGGCCAATGGATGCATGGA 60.829 57.895 2.46 0.00 36.27 3.41
39 40 1.802337 CGGCCAATGGATGCATGGAG 61.802 60.000 2.46 4.05 36.27 3.86
40 41 1.469335 GGCCAATGGATGCATGGAGG 61.469 60.000 2.46 12.51 36.27 4.30
41 42 1.469335 GCCAATGGATGCATGGAGGG 61.469 60.000 2.46 10.22 36.27 4.30
42 43 0.830444 CCAATGGATGCATGGAGGGG 60.830 60.000 2.46 0.00 36.27 4.79
43 44 1.152398 AATGGATGCATGGAGGGGC 60.152 57.895 2.46 0.00 0.00 5.80
44 45 1.951923 AATGGATGCATGGAGGGGCA 61.952 55.000 2.46 0.00 45.23 5.36
48 49 2.772224 TGCATGGAGGGGCATTGT 59.228 55.556 0.00 0.00 34.58 2.71
49 50 1.078891 TGCATGGAGGGGCATTGTT 59.921 52.632 0.00 0.00 34.58 2.83
50 51 1.259142 TGCATGGAGGGGCATTGTTG 61.259 55.000 0.00 0.00 34.58 3.33
51 52 1.963464 GCATGGAGGGGCATTGTTGG 61.963 60.000 0.00 0.00 0.00 3.77
52 53 0.324552 CATGGAGGGGCATTGTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
53 54 0.413037 ATGGAGGGGCATTGTTGGAA 59.587 50.000 0.00 0.00 0.00 3.53
54 55 0.189574 TGGAGGGGCATTGTTGGAAA 59.810 50.000 0.00 0.00 0.00 3.13
55 56 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
56 57 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
57 58 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
58 59 1.970640 AGGGGCATTGTTGGAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
59 60 1.970640 GGGGCATTGTTGGAAAAGTCT 59.029 47.619 0.00 0.00 0.00 3.24
60 61 2.029020 GGGGCATTGTTGGAAAAGTCTC 60.029 50.000 0.00 0.00 0.00 3.36
61 62 2.627699 GGGCATTGTTGGAAAAGTCTCA 59.372 45.455 0.00 0.00 0.00 3.27
62 63 3.069443 GGGCATTGTTGGAAAAGTCTCAA 59.931 43.478 0.00 0.00 0.00 3.02
63 64 4.442753 GGGCATTGTTGGAAAAGTCTCAAA 60.443 41.667 0.00 0.00 0.00 2.69
64 65 5.115480 GGCATTGTTGGAAAAGTCTCAAAA 58.885 37.500 0.00 0.00 0.00 2.44
65 66 5.584251 GGCATTGTTGGAAAAGTCTCAAAAA 59.416 36.000 0.00 0.00 0.00 1.94
93 94 6.678568 TCTCCTTGAGAGTCTTCTTCATTT 57.321 37.500 0.00 0.00 43.71 2.32
94 95 7.782897 TCTCCTTGAGAGTCTTCTTCATTTA 57.217 36.000 0.00 0.00 43.71 1.40
95 96 7.835822 TCTCCTTGAGAGTCTTCTTCATTTAG 58.164 38.462 0.00 0.00 43.71 1.85
96 97 7.453126 TCTCCTTGAGAGTCTTCTTCATTTAGT 59.547 37.037 0.00 0.00 43.71 2.24
97 98 7.607250 TCCTTGAGAGTCTTCTTCATTTAGTC 58.393 38.462 0.00 0.00 32.53 2.59
98 99 6.816140 CCTTGAGAGTCTTCTTCATTTAGTCC 59.184 42.308 0.00 0.00 32.53 3.85
99 100 7.310361 CCTTGAGAGTCTTCTTCATTTAGTCCT 60.310 40.741 0.00 0.00 32.53 3.85
100 101 8.651589 TTGAGAGTCTTCTTCATTTAGTCCTA 57.348 34.615 0.00 0.00 32.53 2.94
101 102 8.651589 TGAGAGTCTTCTTCATTTAGTCCTAA 57.348 34.615 0.00 0.00 32.53 2.69
102 103 9.090103 TGAGAGTCTTCTTCATTTAGTCCTAAA 57.910 33.333 0.00 2.21 35.26 1.85
103 104 9.930693 GAGAGTCTTCTTCATTTAGTCCTAAAA 57.069 33.333 3.78 0.00 34.83 1.52
106 107 9.004717 AGTCTTCTTCATTTAGTCCTAAAAAGC 57.995 33.333 3.78 1.36 38.38 3.51
107 108 8.784043 GTCTTCTTCATTTAGTCCTAAAAAGCA 58.216 33.333 3.78 0.00 38.38 3.91
108 109 9.349713 TCTTCTTCATTTAGTCCTAAAAAGCAA 57.650 29.630 3.78 2.07 38.38 3.91
109 110 9.399403 CTTCTTCATTTAGTCCTAAAAAGCAAC 57.601 33.333 3.78 0.00 38.38 4.17
110 111 8.691661 TCTTCATTTAGTCCTAAAAAGCAACT 57.308 30.769 3.78 0.00 38.38 3.16
111 112 9.131791 TCTTCATTTAGTCCTAAAAAGCAACTT 57.868 29.630 3.78 0.00 38.38 2.66
112 113 9.750125 CTTCATTTAGTCCTAAAAAGCAACTTT 57.250 29.630 3.78 0.00 38.38 2.66
120 121 8.967918 AGTCCTAAAAAGCAACTTTTAGTTTCT 58.032 29.630 17.43 12.19 41.98 2.52
128 129 8.604640 AAGCAACTTTTAGTTTCTAGTAGTCC 57.395 34.615 0.00 0.00 36.03 3.85
129 130 7.160049 AGCAACTTTTAGTTTCTAGTAGTCCC 58.840 38.462 0.00 0.00 36.03 4.46
130 131 7.016366 AGCAACTTTTAGTTTCTAGTAGTCCCT 59.984 37.037 0.00 0.00 36.03 4.20
131 132 7.331440 GCAACTTTTAGTTTCTAGTAGTCCCTC 59.669 40.741 0.00 0.00 36.03 4.30
132 133 7.479352 ACTTTTAGTTTCTAGTAGTCCCTCC 57.521 40.000 0.00 0.00 0.00 4.30
133 134 7.247500 ACTTTTAGTTTCTAGTAGTCCCTCCT 58.753 38.462 0.00 0.00 0.00 3.69
134 135 7.178805 ACTTTTAGTTTCTAGTAGTCCCTCCTG 59.821 40.741 0.00 0.00 0.00 3.86
135 136 4.678538 AGTTTCTAGTAGTCCCTCCTGT 57.321 45.455 0.00 0.00 0.00 4.00
136 137 5.013258 AGTTTCTAGTAGTCCCTCCTGTT 57.987 43.478 0.00 0.00 0.00 3.16
137 138 5.404395 AGTTTCTAGTAGTCCCTCCTGTTT 58.596 41.667 0.00 0.00 0.00 2.83
138 139 5.246429 AGTTTCTAGTAGTCCCTCCTGTTTG 59.754 44.000 0.00 0.00 0.00 2.93
139 140 3.709587 TCTAGTAGTCCCTCCTGTTTGG 58.290 50.000 0.00 0.00 37.10 3.28
140 141 2.417719 AGTAGTCCCTCCTGTTTGGT 57.582 50.000 0.00 0.00 37.07 3.67
141 142 2.702748 AGTAGTCCCTCCTGTTTGGTT 58.297 47.619 0.00 0.00 37.07 3.67
142 143 3.865571 AGTAGTCCCTCCTGTTTGGTTA 58.134 45.455 0.00 0.00 37.07 2.85
143 144 4.237018 AGTAGTCCCTCCTGTTTGGTTAA 58.763 43.478 0.00 0.00 37.07 2.01
144 145 4.661709 AGTAGTCCCTCCTGTTTGGTTAAA 59.338 41.667 0.00 0.00 37.07 1.52
145 146 4.529716 AGTCCCTCCTGTTTGGTTAAAA 57.470 40.909 0.00 0.00 37.07 1.52
146 147 4.874199 AGTCCCTCCTGTTTGGTTAAAAA 58.126 39.130 0.00 0.00 37.07 1.94
147 148 4.893524 AGTCCCTCCTGTTTGGTTAAAAAG 59.106 41.667 0.00 0.00 37.07 2.27
148 149 4.647853 GTCCCTCCTGTTTGGTTAAAAAGT 59.352 41.667 0.00 0.00 37.07 2.66
149 150 5.128171 GTCCCTCCTGTTTGGTTAAAAAGTT 59.872 40.000 0.00 0.00 37.07 2.66
150 151 5.722441 TCCCTCCTGTTTGGTTAAAAAGTTT 59.278 36.000 0.00 0.00 37.07 2.66
151 152 6.046593 CCCTCCTGTTTGGTTAAAAAGTTTC 58.953 40.000 0.00 0.00 37.07 2.78
152 153 6.127168 CCCTCCTGTTTGGTTAAAAAGTTTCT 60.127 38.462 0.00 0.00 37.07 2.52
153 154 7.068962 CCCTCCTGTTTGGTTAAAAAGTTTCTA 59.931 37.037 0.00 0.00 37.07 2.10
154 155 8.471609 CCTCCTGTTTGGTTAAAAAGTTTCTAA 58.528 33.333 0.00 0.00 37.07 2.10
155 156 9.516314 CTCCTGTTTGGTTAAAAAGTTTCTAAG 57.484 33.333 0.00 0.00 37.07 2.18
156 157 9.245481 TCCTGTTTGGTTAAAAAGTTTCTAAGA 57.755 29.630 0.00 0.00 37.07 2.10
157 158 9.863845 CCTGTTTGGTTAAAAAGTTTCTAAGAA 57.136 29.630 0.00 0.00 30.49 2.52
163 164 9.470399 TGGTTAAAAAGTTTCTAAGAAAGACCT 57.530 29.630 0.00 0.00 32.51 3.85
174 175 9.557061 TTTCTAAGAAAGACCTTTTCTAGTTCC 57.443 33.333 2.88 0.00 37.75 3.62
175 176 8.493787 TCTAAGAAAGACCTTTTCTAGTTCCT 57.506 34.615 2.88 0.00 37.75 3.36
176 177 9.597681 TCTAAGAAAGACCTTTTCTAGTTCCTA 57.402 33.333 2.88 0.00 37.75 2.94
177 178 9.642327 CTAAGAAAGACCTTTTCTAGTTCCTAC 57.358 37.037 2.88 0.00 37.75 3.18
178 179 7.613551 AGAAAGACCTTTTCTAGTTCCTACA 57.386 36.000 0.57 0.00 37.03 2.74
179 180 8.208575 AGAAAGACCTTTTCTAGTTCCTACAT 57.791 34.615 0.57 0.00 37.03 2.29
180 181 8.315482 AGAAAGACCTTTTCTAGTTCCTACATC 58.685 37.037 0.57 0.00 37.03 3.06
181 182 7.554959 AAGACCTTTTCTAGTTCCTACATCA 57.445 36.000 0.00 0.00 32.51 3.07
182 183 7.554959 AGACCTTTTCTAGTTCCTACATCAA 57.445 36.000 0.00 0.00 30.17 2.57
183 184 7.974504 AGACCTTTTCTAGTTCCTACATCAAA 58.025 34.615 0.00 0.00 30.17 2.69
184 185 8.437575 AGACCTTTTCTAGTTCCTACATCAAAA 58.562 33.333 0.00 0.00 30.17 2.44
185 186 8.990163 ACCTTTTCTAGTTCCTACATCAAAAA 57.010 30.769 0.00 0.00 0.00 1.94
186 187 9.067986 ACCTTTTCTAGTTCCTACATCAAAAAG 57.932 33.333 0.00 0.00 0.00 2.27
187 188 9.067986 CCTTTTCTAGTTCCTACATCAAAAAGT 57.932 33.333 0.00 0.00 0.00 2.66
190 191 8.617290 TTCTAGTTCCTACATCAAAAAGTTCC 57.383 34.615 0.00 0.00 0.00 3.62
191 192 7.974504 TCTAGTTCCTACATCAAAAAGTTCCT 58.025 34.615 0.00 0.00 0.00 3.36
192 193 6.884280 AGTTCCTACATCAAAAAGTTCCTG 57.116 37.500 0.00 0.00 0.00 3.86
193 194 6.601332 AGTTCCTACATCAAAAAGTTCCTGA 58.399 36.000 0.00 0.00 0.00 3.86
194 195 7.060421 AGTTCCTACATCAAAAAGTTCCTGAA 58.940 34.615 0.00 0.00 0.00 3.02
195 196 7.559897 AGTTCCTACATCAAAAAGTTCCTGAAA 59.440 33.333 0.00 0.00 0.00 2.69
196 197 7.889873 TCCTACATCAAAAAGTTCCTGAAAA 57.110 32.000 0.00 0.00 0.00 2.29
197 198 7.712797 TCCTACATCAAAAAGTTCCTGAAAAC 58.287 34.615 0.00 0.00 0.00 2.43
198 199 7.340743 TCCTACATCAAAAAGTTCCTGAAAACA 59.659 33.333 0.00 0.00 0.00 2.83
199 200 7.978975 CCTACATCAAAAAGTTCCTGAAAACAA 59.021 33.333 0.00 0.00 0.00 2.83
200 201 9.364989 CTACATCAAAAAGTTCCTGAAAACAAA 57.635 29.630 0.00 0.00 0.00 2.83
201 202 8.028540 ACATCAAAAAGTTCCTGAAAACAAAC 57.971 30.769 0.00 0.00 0.00 2.93
202 203 7.659390 ACATCAAAAAGTTCCTGAAAACAAACA 59.341 29.630 0.00 0.00 0.00 2.83
203 204 7.414814 TCAAAAAGTTCCTGAAAACAAACAC 57.585 32.000 0.00 0.00 0.00 3.32
204 205 6.425417 TCAAAAAGTTCCTGAAAACAAACACC 59.575 34.615 0.00 0.00 0.00 4.16
205 206 4.465632 AAGTTCCTGAAAACAAACACCC 57.534 40.909 0.00 0.00 0.00 4.61
206 207 2.764010 AGTTCCTGAAAACAAACACCCC 59.236 45.455 0.00 0.00 0.00 4.95
219 220 2.687566 ACCCCCTTACTCAGCCCG 60.688 66.667 0.00 0.00 0.00 6.13
300 305 6.381707 TGTGTGTAGCCCTTGTACAGATATTA 59.618 38.462 0.00 0.00 31.00 0.98
357 380 2.427506 GACTCCGGATTATCCAATGCC 58.572 52.381 3.57 0.00 35.91 4.40
358 381 1.073923 ACTCCGGATTATCCAATGCCC 59.926 52.381 3.57 0.00 35.91 5.36
360 383 0.405585 CCGGATTATCCAATGCCCCT 59.594 55.000 12.17 0.00 35.91 4.79
361 384 1.614317 CCGGATTATCCAATGCCCCTC 60.614 57.143 12.17 0.00 35.91 4.30
362 385 1.614317 CGGATTATCCAATGCCCCTCC 60.614 57.143 12.17 0.00 35.91 4.30
363 386 1.272704 GGATTATCCAATGCCCCTCCC 60.273 57.143 6.34 0.00 36.28 4.30
364 387 0.786435 ATTATCCAATGCCCCTCCCC 59.214 55.000 0.00 0.00 0.00 4.81
365 388 1.368268 TTATCCAATGCCCCTCCCCC 61.368 60.000 0.00 0.00 0.00 5.40
366 389 2.298525 TATCCAATGCCCCTCCCCCT 62.299 60.000 0.00 0.00 0.00 4.79
367 390 3.825623 CCAATGCCCCTCCCCCTC 61.826 72.222 0.00 0.00 0.00 4.30
368 391 2.697644 CAATGCCCCTCCCCCTCT 60.698 66.667 0.00 0.00 0.00 3.69
369 392 2.130576 AATGCCCCTCCCCCTCTT 59.869 61.111 0.00 0.00 0.00 2.85
518 556 1.012998 CTGCATCATCGTTGACGCG 60.013 57.895 3.53 3.53 43.85 6.01
543 593 6.570692 CACTCCGGCCGTATTATTATTATCT 58.429 40.000 26.12 0.00 0.00 1.98
545 595 8.358148 CACTCCGGCCGTATTATTATTATCTAT 58.642 37.037 26.12 0.00 0.00 1.98
604 654 4.096003 AGGCCGGCGCATTAGTGT 62.096 61.111 22.54 0.00 36.38 3.55
607 657 1.566018 GGCCGGCGCATTAGTGTATC 61.566 60.000 22.54 0.00 36.38 2.24
608 658 1.566018 GCCGGCGCATTAGTGTATCC 61.566 60.000 12.58 0.00 34.03 2.59
609 659 0.249699 CCGGCGCATTAGTGTATCCA 60.250 55.000 10.83 0.00 0.00 3.41
610 660 1.139989 CGGCGCATTAGTGTATCCAG 58.860 55.000 10.83 0.00 0.00 3.86
611 661 1.269569 CGGCGCATTAGTGTATCCAGA 60.270 52.381 10.83 0.00 0.00 3.86
612 662 2.408050 GGCGCATTAGTGTATCCAGAG 58.592 52.381 10.83 0.00 0.00 3.35
613 663 2.224066 GGCGCATTAGTGTATCCAGAGT 60.224 50.000 10.83 0.00 0.00 3.24
614 664 3.458189 GCGCATTAGTGTATCCAGAGTT 58.542 45.455 0.30 0.00 0.00 3.01
615 665 3.491267 GCGCATTAGTGTATCCAGAGTTC 59.509 47.826 0.30 0.00 0.00 3.01
622 672 3.511934 AGTGTATCCAGAGTTCCAGACAC 59.488 47.826 0.00 0.00 36.94 3.67
624 674 3.258372 TGTATCCAGAGTTCCAGACACAC 59.742 47.826 0.00 0.00 0.00 3.82
630 680 4.872691 CCAGAGTTCCAGACACACAATATC 59.127 45.833 0.00 0.00 0.00 1.63
670 726 1.696063 ATTTGATCCAAGGCCATCCG 58.304 50.000 5.01 0.00 37.47 4.18
688 744 4.631740 TCCGGAGCAGGTGACCCA 62.632 66.667 0.00 0.00 0.00 4.51
714 773 2.362242 TCCGAGGGAGAGTTGGTTG 58.638 57.895 0.00 0.00 0.00 3.77
715 774 0.178944 TCCGAGGGAGAGTTGGTTGA 60.179 55.000 0.00 0.00 0.00 3.18
716 775 0.905357 CCGAGGGAGAGTTGGTTGAT 59.095 55.000 0.00 0.00 0.00 2.57
717 776 1.406069 CCGAGGGAGAGTTGGTTGATG 60.406 57.143 0.00 0.00 0.00 3.07
798 857 2.083774 ACAGCTTGTCTCTCTCTCTCG 58.916 52.381 0.00 0.00 0.00 4.04
864 929 2.009681 TTCCTTTCCCTCCTTTTGCC 57.990 50.000 0.00 0.00 0.00 4.52
906 971 6.204882 ACTTCTTGTTTAATTCCTTCTGACGG 59.795 38.462 0.00 0.00 0.00 4.79
929 994 4.322385 GCACCAAACCCGCGTCAC 62.322 66.667 4.92 0.00 0.00 3.67
930 995 2.590575 CACCAAACCCGCGTCACT 60.591 61.111 4.92 0.00 0.00 3.41
933 998 2.549282 CAAACCCGCGTCACTTCG 59.451 61.111 4.92 0.00 0.00 3.79
934 999 1.952133 CAAACCCGCGTCACTTCGA 60.952 57.895 4.92 0.00 0.00 3.71
935 1000 1.952635 AAACCCGCGTCACTTCGAC 60.953 57.895 4.92 0.00 41.62 4.20
949 1015 2.501723 ACTTCGACCTCCATTGCATACT 59.498 45.455 0.00 0.00 0.00 2.12
956 1022 4.019174 ACCTCCATTGCATACTTTCTTGG 58.981 43.478 0.00 0.00 0.00 3.61
1104 1200 3.595108 GAAACGCAACAGGCCTCGC 62.595 63.158 0.00 5.07 40.31 5.03
1112 1208 1.398390 CAACAGGCCTCGCTGTAATTC 59.602 52.381 0.00 0.00 32.95 2.17
1128 1224 4.782691 TGTAATTCATCTCTCCCCACAGAA 59.217 41.667 0.00 0.00 0.00 3.02
1140 1236 3.160269 CCCCACAGAAGCAGATTCTTTT 58.840 45.455 0.00 0.00 46.49 2.27
1161 1257 4.861389 TTTGCTTTGTTTTCGTACTCGA 57.139 36.364 0.00 0.00 44.66 4.04
1173 1269 7.007546 TGTTTTCGTACTCGATTTGTTGTTTTG 59.992 33.333 0.00 0.00 45.65 2.44
1177 1273 6.466413 TCGTACTCGATTTGTTGTTTTGTTTG 59.534 34.615 0.00 0.00 41.35 2.93
1178 1274 6.466413 CGTACTCGATTTGTTGTTTTGTTTGA 59.534 34.615 0.00 0.00 39.71 2.69
1179 1275 7.165154 CGTACTCGATTTGTTGTTTTGTTTGAT 59.835 33.333 0.00 0.00 39.71 2.57
1181 1277 6.030379 TCGATTTGTTGTTTTGTTTGATGC 57.970 33.333 0.00 0.00 0.00 3.91
1184 1280 5.447478 TTTGTTGTTTTGTTTGATGCGAG 57.553 34.783 0.00 0.00 0.00 5.03
1185 1281 4.362932 TGTTGTTTTGTTTGATGCGAGA 57.637 36.364 0.00 0.00 0.00 4.04
1186 1282 4.101942 TGTTGTTTTGTTTGATGCGAGAC 58.898 39.130 0.00 0.00 0.00 3.36
1189 1285 4.350346 TGTTTTGTTTGATGCGAGACTTG 58.650 39.130 0.00 0.00 0.00 3.16
1190 1286 4.095632 TGTTTTGTTTGATGCGAGACTTGA 59.904 37.500 0.00 0.00 0.00 3.02
1259 1355 7.948034 TCCCTGAGTTGTTCTTTTCTTTTAA 57.052 32.000 0.00 0.00 0.00 1.52
1260 1356 8.356000 TCCCTGAGTTGTTCTTTTCTTTTAAA 57.644 30.769 0.00 0.00 0.00 1.52
1267 1363 9.140286 AGTTGTTCTTTTCTTTTAAACTGCTTC 57.860 29.630 0.00 0.00 0.00 3.86
1275 1371 8.782533 TTTCTTTTAAACTGCTTCGAATCTTC 57.217 30.769 0.00 0.00 0.00 2.87
1301 1397 9.376075 CAACTGTTCTGTTAGATGATCTGTAAT 57.624 33.333 4.96 0.00 0.00 1.89
1304 1404 8.634475 TGTTCTGTTAGATGATCTGTAATTCG 57.366 34.615 4.96 0.00 0.00 3.34
1326 1426 3.302699 GTCTGTTCGTAACTTGATACGCC 59.697 47.826 5.73 1.07 46.22 5.68
1346 1446 4.295051 GCCGCAAACTGAAAAGAACATTA 58.705 39.130 0.00 0.00 0.00 1.90
1347 1447 4.742659 GCCGCAAACTGAAAAGAACATTAA 59.257 37.500 0.00 0.00 0.00 1.40
1349 1449 6.073819 GCCGCAAACTGAAAAGAACATTAATT 60.074 34.615 0.00 0.00 0.00 1.40
1350 1450 7.501515 CCGCAAACTGAAAAGAACATTAATTC 58.498 34.615 0.00 0.00 0.00 2.17
1353 1453 8.490355 GCAAACTGAAAAGAACATTAATTCCTG 58.510 33.333 0.00 0.00 0.00 3.86
1369 1492 9.686683 ATTAATTCCTGTTCACTAAAGCTACAT 57.313 29.630 0.00 0.00 0.00 2.29
1375 1498 6.428159 CCTGTTCACTAAAGCTACATGAAACT 59.572 38.462 0.00 0.00 31.45 2.66
1464 1593 1.420514 TGGGTGGTCATTTTCGTGGTA 59.579 47.619 0.00 0.00 0.00 3.25
1477 1606 5.520022 TTTCGTGGTAAAGATTTACGAGC 57.480 39.130 8.87 2.43 43.46 5.03
1478 1607 4.177165 TCGTGGTAAAGATTTACGAGCA 57.823 40.909 8.87 0.61 42.97 4.26
1479 1608 4.751060 TCGTGGTAAAGATTTACGAGCAT 58.249 39.130 8.87 0.00 42.97 3.79
1497 1626 7.859598 ACGAGCATAGTACTGTACATACTAAC 58.140 38.462 19.27 16.47 38.35 2.34
1509 1638 6.411376 TGTACATACTAACCTCCAACCATTG 58.589 40.000 0.00 0.00 0.00 2.82
1568 1697 0.463654 CCCAGCGTGCAAGCCTATAA 60.464 55.000 21.32 0.00 38.01 0.98
1600 1729 2.765689 TGGTGAGACCCCAATTGTTT 57.234 45.000 4.43 0.00 37.50 2.83
1601 1730 2.593026 TGGTGAGACCCCAATTGTTTC 58.407 47.619 4.43 0.00 37.50 2.78
1602 1731 2.176798 TGGTGAGACCCCAATTGTTTCT 59.823 45.455 4.43 2.69 37.50 2.52
1603 1732 2.820197 GGTGAGACCCCAATTGTTTCTC 59.180 50.000 16.06 16.06 34.48 2.87
1604 1733 3.498661 GGTGAGACCCCAATTGTTTCTCT 60.499 47.826 20.41 9.53 34.89 3.10
1607 1736 2.158475 AGACCCCAATTGTTTCTCTGCA 60.158 45.455 4.43 0.00 0.00 4.41
1629 1758 4.279169 CACAAACCTCATCATTTCACACCT 59.721 41.667 0.00 0.00 0.00 4.00
1633 1762 5.712152 ACCTCATCATTTCACACCTTTTC 57.288 39.130 0.00 0.00 0.00 2.29
1634 1763 4.524328 ACCTCATCATTTCACACCTTTTCC 59.476 41.667 0.00 0.00 0.00 3.13
1635 1764 4.082026 CCTCATCATTTCACACCTTTTCCC 60.082 45.833 0.00 0.00 0.00 3.97
1636 1765 3.831911 TCATCATTTCACACCTTTTCCCC 59.168 43.478 0.00 0.00 0.00 4.81
1637 1766 2.604139 TCATTTCACACCTTTTCCCCC 58.396 47.619 0.00 0.00 0.00 5.40
1672 1803 5.659463 TGTTTCACAAATTCAAACTCTGGG 58.341 37.500 0.00 0.00 32.28 4.45
1712 1845 4.119442 TCTTGTATTCGTGGGCTTACTC 57.881 45.455 0.00 0.00 0.00 2.59
1823 2115 8.903570 TTACACAAACATGTACTTGAAACTTG 57.096 30.769 15.51 8.12 34.79 3.16
1888 2183 2.095161 ACGACAGATCTTCGAAGTGGTC 60.095 50.000 23.85 21.82 39.83 4.02
1894 2189 1.901591 TCTTCGAAGTGGTCTACCGT 58.098 50.000 23.85 0.00 39.43 4.83
1944 2239 1.136891 GCTTCACAACAAAGTGGGCTT 59.863 47.619 0.00 0.00 39.93 4.35
1984 2279 7.748683 TCGATAAACAAGACATGCACAATAAAC 59.251 33.333 0.00 0.00 0.00 2.01
2032 2327 6.601613 AGAACAATTCCCATTAATTAGCGTCA 59.398 34.615 0.00 0.00 0.00 4.35
2039 2334 4.625742 CCCATTAATTAGCGTCACCGATAG 59.374 45.833 0.00 0.00 36.18 2.08
2055 2351 4.689345 ACCGATAGAAAGAAAAGTGAACCG 59.311 41.667 0.00 0.00 39.76 4.44
2072 2368 1.808343 ACCGTTTTACGCCTTCAATCC 59.192 47.619 0.00 0.00 40.91 3.01
2090 2388 0.320073 CCACGAAGACGGCTTTGGTA 60.320 55.000 22.42 0.00 44.46 3.25
2106 2404 5.928264 GCTTTGGTAAAATGAGTGCATCTTT 59.072 36.000 0.00 0.00 32.35 2.52
2235 2548 7.192148 TCATGCAAATTCAAAATTTGTCAGG 57.808 32.000 20.33 18.86 40.19 3.86
2249 2562 3.717400 TGTCAGGATTCAGATACGAGC 57.283 47.619 0.00 0.00 0.00 5.03
2250 2563 3.023832 TGTCAGGATTCAGATACGAGCA 58.976 45.455 0.00 0.00 0.00 4.26
2251 2564 3.181486 TGTCAGGATTCAGATACGAGCAC 60.181 47.826 0.00 0.00 0.00 4.40
2257 2570 4.502259 GGATTCAGATACGAGCACCAGAAT 60.502 45.833 0.00 0.00 0.00 2.40
2273 2586 4.218417 ACCAGAATTTCAAATTCGAGGTGG 59.782 41.667 28.08 24.18 38.72 4.61
2274 2587 4.458989 CCAGAATTTCAAATTCGAGGTGGA 59.541 41.667 18.05 0.00 33.51 4.02
2275 2588 5.126061 CCAGAATTTCAAATTCGAGGTGGAT 59.874 40.000 18.05 0.00 33.51 3.41
2276 2589 6.350445 CCAGAATTTCAAATTCGAGGTGGATT 60.350 38.462 18.05 0.00 33.51 3.01
2277 2590 6.749118 CAGAATTTCAAATTCGAGGTGGATTC 59.251 38.462 15.69 0.85 33.51 2.52
2627 2940 1.067071 CGAGAAAGCCCGTAAGTTCCT 60.067 52.381 0.00 0.00 0.00 3.36
2634 2947 0.813184 CCCGTAAGTTCCTGCTCGTA 59.187 55.000 0.00 0.00 0.00 3.43
2637 2950 1.135859 CGTAAGTTCCTGCTCGTACGT 60.136 52.381 16.05 0.00 37.29 3.57
2638 2951 2.513893 GTAAGTTCCTGCTCGTACGTC 58.486 52.381 16.05 9.10 0.00 4.34
2641 2954 1.068472 AGTTCCTGCTCGTACGTCTTG 60.068 52.381 16.05 5.65 0.00 3.02
2654 2972 1.787847 GTCTTGTTCATGCCGACGG 59.212 57.895 10.29 10.29 0.00 4.79
2675 2993 2.245942 CGATCGACGGATGATGATGAC 58.754 52.381 10.26 0.00 38.46 3.06
2677 2995 0.317854 TCGACGGATGATGATGACGC 60.318 55.000 0.00 0.00 0.00 5.19
2682 3000 2.558359 ACGGATGATGATGACGCTGATA 59.442 45.455 0.00 0.00 0.00 2.15
2683 3001 3.194329 ACGGATGATGATGACGCTGATAT 59.806 43.478 0.00 0.00 0.00 1.63
2693 3016 2.427095 TGACGCTGATATATGATCGGGG 59.573 50.000 11.53 11.53 41.43 5.73
3036 3367 0.530650 ATTCCGTCGCATCATCGCTT 60.531 50.000 0.00 0.00 0.00 4.68
3081 3412 2.364002 TCTTGGTCGCCGATGATATGAA 59.636 45.455 0.00 0.00 0.00 2.57
3195 3531 1.202973 GGATCATGTCGACGAGCGTG 61.203 60.000 11.62 5.61 41.80 5.34
3244 3580 2.749621 CTGGCCTCCATTGTTGTTAGAC 59.250 50.000 3.32 0.00 30.82 2.59
3320 3671 7.776107 TGAAGGTAGATTCAGAATGTACAGAG 58.224 38.462 24.65 0.00 38.87 3.35
3341 3692 2.362736 CAGGAATGTGTGGGAGATGTG 58.637 52.381 0.00 0.00 0.00 3.21
3346 3697 0.250424 TGTGTGGGAGATGTGCAGTG 60.250 55.000 0.00 0.00 0.00 3.66
3384 3736 3.256631 ACTTTTCCAAGGCAGCAACTATG 59.743 43.478 0.00 0.00 33.82 2.23
3401 3753 5.147330 ACTATGAAACCGACAGATGTTCA 57.853 39.130 0.00 0.00 0.00 3.18
3467 3827 5.984233 TTTTGTCGGATGGATATTTCGAG 57.016 39.130 0.00 0.00 0.00 4.04
3478 3842 2.754946 TATTTCGAGCGAAACAGGGT 57.245 45.000 18.81 6.88 45.34 4.34
3529 3893 4.637534 AGTTTGCATCAAGATTCGTGCTAT 59.362 37.500 0.00 0.00 38.37 2.97
3534 3898 5.145059 GCATCAAGATTCGTGCTATCATTG 58.855 41.667 0.00 0.00 34.85 2.82
3535 3899 4.801147 TCAAGATTCGTGCTATCATTGC 57.199 40.909 0.00 0.00 0.00 3.56
3583 3949 6.563422 TGTTTCTTCCAAACAAGAGAACATG 58.437 36.000 0.00 0.00 37.22 3.21
3617 3984 4.937620 ACATTGCAGGTCAACTATACACAG 59.062 41.667 0.00 0.00 37.53 3.66
3627 3994 4.095932 TCAACTATACACAGGTGCTACTCG 59.904 45.833 0.00 0.00 33.00 4.18
3644 4011 7.691050 GTGCTACTCGTTGTATAAAATGTTTCC 59.309 37.037 0.00 0.00 0.00 3.13
3645 4012 7.388224 TGCTACTCGTTGTATAAAATGTTTCCA 59.612 33.333 0.00 0.00 0.00 3.53
3700 4070 8.964420 TTCATTTTTCGAATGAATTGTACTCC 57.036 30.769 8.27 0.00 40.53 3.85
3701 4071 7.535139 TCATTTTTCGAATGAATTGTACTCCC 58.465 34.615 0.00 0.00 34.07 4.30
3702 4072 7.393234 TCATTTTTCGAATGAATTGTACTCCCT 59.607 33.333 0.00 0.00 34.07 4.20
3703 4073 8.673711 CATTTTTCGAATGAATTGTACTCCCTA 58.326 33.333 0.00 0.00 33.20 3.53
3704 4074 8.801882 TTTTTCGAATGAATTGTACTCCCTAT 57.198 30.769 0.00 0.00 33.20 2.57
3705 4075 7.786178 TTTCGAATGAATTGTACTCCCTATG 57.214 36.000 0.00 0.00 33.20 2.23
3706 4076 6.479972 TCGAATGAATTGTACTCCCTATGT 57.520 37.500 0.00 0.00 0.00 2.29
3707 4077 6.884832 TCGAATGAATTGTACTCCCTATGTT 58.115 36.000 0.00 0.00 0.00 2.71
3708 4078 6.984474 TCGAATGAATTGTACTCCCTATGTTC 59.016 38.462 0.00 0.00 0.00 3.18
3709 4079 6.074302 CGAATGAATTGTACTCCCTATGTTCG 60.074 42.308 0.00 0.00 0.00 3.95
3710 4080 4.439057 TGAATTGTACTCCCTATGTTCGC 58.561 43.478 0.00 0.00 0.00 4.70
3711 4081 4.161565 TGAATTGTACTCCCTATGTTCGCT 59.838 41.667 0.00 0.00 0.00 4.93
3712 4082 4.755266 ATTGTACTCCCTATGTTCGCTT 57.245 40.909 0.00 0.00 0.00 4.68
3713 4083 4.546829 TTGTACTCCCTATGTTCGCTTT 57.453 40.909 0.00 0.00 0.00 3.51
3714 4084 4.546829 TGTACTCCCTATGTTCGCTTTT 57.453 40.909 0.00 0.00 0.00 2.27
3715 4085 5.664294 TGTACTCCCTATGTTCGCTTTTA 57.336 39.130 0.00 0.00 0.00 1.52
3716 4086 6.229936 TGTACTCCCTATGTTCGCTTTTAT 57.770 37.500 0.00 0.00 0.00 1.40
3717 4087 7.350744 TGTACTCCCTATGTTCGCTTTTATA 57.649 36.000 0.00 0.00 0.00 0.98
3718 4088 7.784037 TGTACTCCCTATGTTCGCTTTTATAA 58.216 34.615 0.00 0.00 0.00 0.98
3719 4089 7.924412 TGTACTCCCTATGTTCGCTTTTATAAG 59.076 37.037 0.00 0.00 34.36 1.73
3720 4090 6.289064 ACTCCCTATGTTCGCTTTTATAAGG 58.711 40.000 0.00 0.00 31.76 2.69
3721 4091 5.061179 TCCCTATGTTCGCTTTTATAAGGC 58.939 41.667 0.00 3.38 31.76 4.35
3722 4092 5.063880 CCCTATGTTCGCTTTTATAAGGCT 58.936 41.667 9.66 0.00 31.76 4.58
3723 4093 5.531287 CCCTATGTTCGCTTTTATAAGGCTT 59.469 40.000 4.58 4.58 31.76 4.35
3724 4094 6.039382 CCCTATGTTCGCTTTTATAAGGCTTT 59.961 38.462 4.45 0.00 31.76 3.51
3725 4095 6.912591 CCTATGTTCGCTTTTATAAGGCTTTG 59.087 38.462 4.45 0.00 31.76 2.77
3726 4096 5.699097 TGTTCGCTTTTATAAGGCTTTGT 57.301 34.783 4.45 0.00 31.76 2.83
3727 4097 6.804770 TGTTCGCTTTTATAAGGCTTTGTA 57.195 33.333 4.45 0.00 31.76 2.41
3728 4098 6.837992 TGTTCGCTTTTATAAGGCTTTGTAG 58.162 36.000 4.45 0.00 31.76 2.74
3729 4099 6.651643 TGTTCGCTTTTATAAGGCTTTGTAGA 59.348 34.615 4.45 0.00 31.76 2.59
3730 4100 7.335924 TGTTCGCTTTTATAAGGCTTTGTAGAT 59.664 33.333 4.45 0.00 31.76 1.98
3731 4101 7.246674 TCGCTTTTATAAGGCTTTGTAGATG 57.753 36.000 4.45 0.00 31.76 2.90
3732 4102 6.821665 TCGCTTTTATAAGGCTTTGTAGATGT 59.178 34.615 4.45 0.00 31.76 3.06
3733 4103 7.335924 TCGCTTTTATAAGGCTTTGTAGATGTT 59.664 33.333 4.45 0.00 31.76 2.71
3734 4104 7.968405 CGCTTTTATAAGGCTTTGTAGATGTTT 59.032 33.333 4.45 0.00 31.76 2.83
3735 4105 9.290483 GCTTTTATAAGGCTTTGTAGATGTTTC 57.710 33.333 4.45 0.00 31.76 2.78
3738 4108 9.733556 TTTATAAGGCTTTGTAGATGTTTCAGA 57.266 29.630 4.45 0.00 0.00 3.27
3739 4109 5.948992 AAGGCTTTGTAGATGTTTCAGAC 57.051 39.130 0.00 0.00 0.00 3.51
3740 4110 4.973168 AGGCTTTGTAGATGTTTCAGACA 58.027 39.130 0.00 0.00 43.71 3.41
3741 4111 4.999950 AGGCTTTGTAGATGTTTCAGACAG 59.000 41.667 0.00 0.00 42.62 3.51
3742 4112 4.757149 GGCTTTGTAGATGTTTCAGACAGT 59.243 41.667 0.00 0.00 42.62 3.55
3743 4113 5.334414 GGCTTTGTAGATGTTTCAGACAGTG 60.334 44.000 0.00 0.00 42.62 3.66
3744 4114 5.237344 GCTTTGTAGATGTTTCAGACAGTGT 59.763 40.000 0.00 0.00 42.62 3.55
3745 4115 6.603237 TTTGTAGATGTTTCAGACAGTGTG 57.397 37.500 0.00 0.00 42.62 3.82
3746 4116 4.058124 TGTAGATGTTTCAGACAGTGTGC 58.942 43.478 0.00 0.00 42.62 4.57
3747 4117 3.198409 AGATGTTTCAGACAGTGTGCA 57.802 42.857 0.00 0.00 42.62 4.57
3748 4118 3.544684 AGATGTTTCAGACAGTGTGCAA 58.455 40.909 0.00 0.00 42.62 4.08
3749 4119 3.947196 AGATGTTTCAGACAGTGTGCAAA 59.053 39.130 0.00 0.00 42.62 3.68
3750 4120 4.398988 AGATGTTTCAGACAGTGTGCAAAA 59.601 37.500 0.00 0.00 42.62 2.44
3751 4121 3.832276 TGTTTCAGACAGTGTGCAAAAC 58.168 40.909 0.00 8.57 33.40 2.43
3752 4122 3.254411 TGTTTCAGACAGTGTGCAAAACA 59.746 39.130 16.68 16.68 33.98 2.83
3753 4123 4.233789 GTTTCAGACAGTGTGCAAAACAA 58.766 39.130 0.00 0.00 41.57 2.83
3754 4124 3.485947 TCAGACAGTGTGCAAAACAAC 57.514 42.857 0.00 0.00 41.57 3.32
3755 4125 2.816672 TCAGACAGTGTGCAAAACAACA 59.183 40.909 0.00 0.00 41.57 3.33
3756 4126 2.916716 CAGACAGTGTGCAAAACAACAC 59.083 45.455 0.00 0.00 41.57 3.32
3757 4127 2.556189 AGACAGTGTGCAAAACAACACA 59.444 40.909 0.00 0.00 44.19 3.72
3764 4134 5.274881 TGTGCAAAACAACACAATTTCAC 57.725 34.783 0.00 0.00 43.48 3.18
3765 4135 4.993584 TGTGCAAAACAACACAATTTCACT 59.006 33.333 0.00 0.00 43.48 3.41
3766 4136 5.468072 TGTGCAAAACAACACAATTTCACTT 59.532 32.000 0.00 0.00 43.48 3.16
3767 4137 5.789512 GTGCAAAACAACACAATTTCACTTG 59.210 36.000 0.00 0.00 36.77 3.16
3768 4138 5.468072 TGCAAAACAACACAATTTCACTTGT 59.532 32.000 0.00 0.00 39.91 3.16
3769 4139 6.014898 GCAAAACAACACAATTTCACTTGTC 58.985 36.000 0.00 0.00 37.25 3.18
3770 4140 6.128580 GCAAAACAACACAATTTCACTTGTCT 60.129 34.615 0.00 0.00 37.25 3.41
3771 4141 6.949578 AAACAACACAATTTCACTTGTCTG 57.050 33.333 0.00 0.00 37.25 3.51
3772 4142 5.895636 ACAACACAATTTCACTTGTCTGA 57.104 34.783 0.00 0.00 37.25 3.27
3773 4143 6.266168 ACAACACAATTTCACTTGTCTGAA 57.734 33.333 0.00 0.00 37.25 3.02
3774 4144 6.686630 ACAACACAATTTCACTTGTCTGAAA 58.313 32.000 0.00 0.00 42.83 2.69
3775 4145 6.586082 ACAACACAATTTCACTTGTCTGAAAC 59.414 34.615 0.00 0.00 41.76 2.78
3776 4146 5.331902 ACACAATTTCACTTGTCTGAAACG 58.668 37.500 0.00 0.00 41.76 3.60
3777 4147 5.123186 ACACAATTTCACTTGTCTGAAACGA 59.877 36.000 0.00 0.00 41.76 3.85
3778 4148 5.452302 CACAATTTCACTTGTCTGAAACGAC 59.548 40.000 0.00 0.00 41.76 4.34
3779 4149 5.354234 ACAATTTCACTTGTCTGAAACGACT 59.646 36.000 0.00 0.00 41.76 4.18
3780 4150 6.128007 ACAATTTCACTTGTCTGAAACGACTT 60.128 34.615 0.00 0.00 41.76 3.01
3781 4151 7.065324 ACAATTTCACTTGTCTGAAACGACTTA 59.935 33.333 0.00 0.00 41.76 2.24
3782 4152 7.730364 ATTTCACTTGTCTGAAACGACTTAT 57.270 32.000 0.00 0.00 41.76 1.73
3783 4153 8.827177 ATTTCACTTGTCTGAAACGACTTATA 57.173 30.769 0.00 0.00 41.76 0.98
3784 4154 8.651391 TTTCACTTGTCTGAAACGACTTATAA 57.349 30.769 0.00 0.00 35.63 0.98
3785 4155 8.651391 TTCACTTGTCTGAAACGACTTATAAA 57.349 30.769 0.00 0.00 35.00 1.40
3786 4156 8.651391 TCACTTGTCTGAAACGACTTATAAAA 57.349 30.769 0.00 0.00 35.00 1.52
3787 4157 8.761497 TCACTTGTCTGAAACGACTTATAAAAG 58.239 33.333 0.00 0.00 38.77 2.27
3789 4159 8.548721 ACTTGTCTGAAACGACTTATAAAAGTG 58.451 33.333 0.00 0.00 46.09 3.16
3790 4160 8.651391 TTGTCTGAAACGACTTATAAAAGTGA 57.349 30.769 0.00 0.00 46.09 3.41
3791 4161 8.651391 TGTCTGAAACGACTTATAAAAGTGAA 57.349 30.769 0.00 0.00 46.09 3.18
3792 4162 8.545420 TGTCTGAAACGACTTATAAAAGTGAAC 58.455 33.333 0.00 0.00 46.09 3.18
3793 4163 7.734726 GTCTGAAACGACTTATAAAAGTGAACG 59.265 37.037 0.00 0.00 46.09 3.95
3794 4164 6.879962 TGAAACGACTTATAAAAGTGAACGG 58.120 36.000 0.00 0.00 46.09 4.44
3795 4165 6.700960 TGAAACGACTTATAAAAGTGAACGGA 59.299 34.615 0.00 0.00 46.09 4.69
3796 4166 6.701432 AACGACTTATAAAAGTGAACGGAG 57.299 37.500 0.00 0.00 46.09 4.63
3797 4167 6.017400 ACGACTTATAAAAGTGAACGGAGA 57.983 37.500 0.00 0.00 46.09 3.71
3798 4168 6.449698 ACGACTTATAAAAGTGAACGGAGAA 58.550 36.000 0.00 0.00 46.09 2.87
3799 4169 6.925165 ACGACTTATAAAAGTGAACGGAGAAA 59.075 34.615 0.00 0.00 46.09 2.52
3803 4173 9.939802 ACTTATAAAAGTGAACGGAGAAAGTAT 57.060 29.630 0.00 0.00 44.40 2.12
3810 4180 7.745620 AGTGAACGGAGAAAGTATCATTTTT 57.254 32.000 0.00 0.00 0.00 1.94
3857 4230 3.791245 TCCAAAAACCATTTCTGCACAC 58.209 40.909 0.00 0.00 0.00 3.82
3862 4235 1.808411 ACCATTTCTGCACACGGTAG 58.192 50.000 0.00 0.00 0.00 3.18
3876 4249 3.457234 CACGGTAGTGCATATGTGATGT 58.543 45.455 4.29 0.00 41.94 3.06
3883 4256 6.073385 GGTAGTGCATATGTGATGTTGATCTG 60.073 42.308 4.29 0.00 0.00 2.90
3884 4257 4.820173 AGTGCATATGTGATGTTGATCTGG 59.180 41.667 4.29 0.00 0.00 3.86
3889 4262 6.039047 GCATATGTGATGTTGATCTGGAAAGT 59.961 38.462 4.29 0.00 0.00 2.66
3892 4265 6.713762 TGTGATGTTGATCTGGAAAGTTTT 57.286 33.333 0.00 0.00 0.00 2.43
3898 4271 7.169158 TGTTGATCTGGAAAGTTTTGAGTTT 57.831 32.000 0.00 0.00 0.00 2.66
3919 4292 9.965824 GAGTTTAAATGTTCTTCCATTTGAGAA 57.034 29.630 8.89 0.00 43.14 2.87
3950 4323 1.531578 GAGGAGTTTGCTTGGACGAAC 59.468 52.381 0.00 0.00 34.64 3.95
3954 4327 3.562557 GGAGTTTGCTTGGACGAACTTTA 59.437 43.478 0.00 0.00 43.00 1.85
3966 4339 6.507900 TGGACGAACTTTAATGCAAAAATGA 58.492 32.000 0.00 0.00 0.00 2.57
3968 4341 7.043059 TGGACGAACTTTAATGCAAAAATGAAC 60.043 33.333 0.00 0.00 0.00 3.18
3969 4342 7.043059 GGACGAACTTTAATGCAAAAATGAACA 60.043 33.333 0.00 0.00 0.00 3.18
3973 4346 7.481275 ACTTTAATGCAAAAATGAACAGTGG 57.519 32.000 0.00 0.00 0.00 4.00
3979 4352 4.220382 TGCAAAAATGAACAGTGGGGATAG 59.780 41.667 0.00 0.00 0.00 2.08
3987 5105 1.344087 ACAGTGGGGATAGGGGTACAG 60.344 57.143 0.00 0.00 0.00 2.74
4004 5128 4.572389 GGTACAGTGGTATGCAATCAGAAG 59.428 45.833 0.00 0.00 0.00 2.85
4008 5132 5.048504 ACAGTGGTATGCAATCAGAAGTTTG 60.049 40.000 0.00 0.00 0.00 2.93
4009 5133 4.082571 AGTGGTATGCAATCAGAAGTTTGC 60.083 41.667 0.00 0.87 45.99 3.68
4010 5134 4.081406 TGGTATGCAATCAGAAGTTTGCT 58.919 39.130 8.37 0.00 45.98 3.91
4011 5135 4.523943 TGGTATGCAATCAGAAGTTTGCTT 59.476 37.500 8.37 5.21 45.98 3.91
4012 5136 4.860907 GGTATGCAATCAGAAGTTTGCTTG 59.139 41.667 8.37 0.00 45.98 4.01
4013 5137 2.746269 TGCAATCAGAAGTTTGCTTGC 58.254 42.857 14.34 14.34 45.98 4.01
4025 5192 4.082125 AGTTTGCTTGCACTAGGCTTATT 58.918 39.130 0.00 0.00 45.15 1.40
4027 5194 5.710099 AGTTTGCTTGCACTAGGCTTATTAA 59.290 36.000 0.00 0.00 45.15 1.40
4029 5196 6.773976 TTGCTTGCACTAGGCTTATTAATT 57.226 33.333 0.00 0.00 45.15 1.40
4030 5197 6.377327 TGCTTGCACTAGGCTTATTAATTC 57.623 37.500 0.00 0.00 45.15 2.17
4031 5198 6.122277 TGCTTGCACTAGGCTTATTAATTCT 58.878 36.000 0.00 0.00 45.15 2.40
4032 5199 6.038603 TGCTTGCACTAGGCTTATTAATTCTG 59.961 38.462 0.00 0.00 45.15 3.02
4036 5203 7.985476 TGCACTAGGCTTATTAATTCTGTTTC 58.015 34.615 0.00 0.00 45.15 2.78
4038 5205 7.468768 GCACTAGGCTTATTAATTCTGTTTCCC 60.469 40.741 0.00 0.00 40.25 3.97
4043 5210 8.880244 AGGCTTATTAATTCTGTTTCCCTTTTT 58.120 29.630 0.00 0.00 0.00 1.94
4044 5211 9.151471 GGCTTATTAATTCTGTTTCCCTTTTTC 57.849 33.333 0.00 0.00 0.00 2.29
4049 5216 9.987272 ATTAATTCTGTTTCCCTTTTTCTTCTG 57.013 29.630 0.00 0.00 0.00 3.02
4055 5222 9.807921 TCTGTTTCCCTTTTTCTTCTGTATATT 57.192 29.630 0.00 0.00 0.00 1.28
4093 5260 4.513198 TTAATTTTGCAAAGGTCCCTCG 57.487 40.909 12.41 0.00 0.00 4.63
4094 5261 1.256812 ATTTTGCAAAGGTCCCTCGG 58.743 50.000 12.41 0.00 0.00 4.63
4101 5268 1.415672 AAAGGTCCCTCGGCTCACAA 61.416 55.000 0.00 0.00 0.00 3.33
4112 5280 2.158957 TCGGCTCACAACAAAGAGAACT 60.159 45.455 0.00 0.00 33.74 3.01
4121 5289 6.376864 TCACAACAAAGAGAACTCCAATTTGA 59.623 34.615 16.29 3.52 35.40 2.69
4123 5291 5.424121 ACAAAGAGAACTCCAATTTGACG 57.576 39.130 16.29 0.00 35.40 4.35
4129 5297 4.822026 AGAACTCCAATTTGACGAGGTAG 58.178 43.478 0.00 0.00 0.00 3.18
4158 5326 3.252458 ACCAAAGCATAACCGTGAAAGAC 59.748 43.478 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.739049 CGCCCACATGGTGTTGTTT 59.261 52.632 0.00 0.00 39.95 2.83
1 2 2.199652 CCGCCCACATGGTGTTGTT 61.200 57.895 0.00 0.00 43.57 2.83
2 3 2.597217 CCGCCCACATGGTGTTGT 60.597 61.111 0.00 0.00 43.57 3.32
3 4 4.054825 GCCGCCCACATGGTGTTG 62.055 66.667 0.00 0.00 43.57 3.33
18 19 3.228759 ATGCATCCATTGGCCGCC 61.229 61.111 1.04 1.04 0.00 6.13
19 20 2.028484 CATGCATCCATTGGCCGC 59.972 61.111 0.00 8.71 0.00 6.53
20 21 1.802337 CTCCATGCATCCATTGGCCG 61.802 60.000 0.00 0.00 0.00 6.13
21 22 1.469335 CCTCCATGCATCCATTGGCC 61.469 60.000 0.00 0.00 0.00 5.36
22 23 1.469335 CCCTCCATGCATCCATTGGC 61.469 60.000 0.00 0.00 0.00 4.52
23 24 0.830444 CCCCTCCATGCATCCATTGG 60.830 60.000 0.00 0.00 0.00 3.16
24 25 1.469335 GCCCCTCCATGCATCCATTG 61.469 60.000 0.00 0.00 0.00 2.82
25 26 1.152398 GCCCCTCCATGCATCCATT 60.152 57.895 0.00 0.00 0.00 3.16
26 27 1.736491 ATGCCCCTCCATGCATCCAT 61.736 55.000 0.00 0.00 44.58 3.41
27 28 1.951923 AATGCCCCTCCATGCATCCA 61.952 55.000 0.00 0.00 46.97 3.41
28 29 1.152398 AATGCCCCTCCATGCATCC 60.152 57.895 0.00 0.00 46.97 3.51
29 30 0.757935 ACAATGCCCCTCCATGCATC 60.758 55.000 0.00 0.00 46.97 3.91
31 32 1.078891 AACAATGCCCCTCCATGCA 59.921 52.632 0.00 0.00 42.52 3.96
32 33 1.518774 CAACAATGCCCCTCCATGC 59.481 57.895 0.00 0.00 0.00 4.06
33 34 0.324552 TCCAACAATGCCCCTCCATG 60.325 55.000 0.00 0.00 0.00 3.66
34 35 0.413037 TTCCAACAATGCCCCTCCAT 59.587 50.000 0.00 0.00 0.00 3.41
35 36 0.189574 TTTCCAACAATGCCCCTCCA 59.810 50.000 0.00 0.00 0.00 3.86
36 37 1.276138 CTTTTCCAACAATGCCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
37 38 1.970640 ACTTTTCCAACAATGCCCCTC 59.029 47.619 0.00 0.00 0.00 4.30
38 39 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
39 40 1.970640 AGACTTTTCCAACAATGCCCC 59.029 47.619 0.00 0.00 0.00 5.80
40 41 2.627699 TGAGACTTTTCCAACAATGCCC 59.372 45.455 0.00 0.00 0.00 5.36
41 42 4.320608 TTGAGACTTTTCCAACAATGCC 57.679 40.909 0.00 0.00 0.00 4.40
42 43 6.660887 TTTTTGAGACTTTTCCAACAATGC 57.339 33.333 0.00 0.00 0.00 3.56
70 71 6.678568 AAATGAAGAAGACTCTCAAGGAGA 57.321 37.500 0.00 0.00 44.45 3.71
71 72 7.610865 ACTAAATGAAGAAGACTCTCAAGGAG 58.389 38.462 0.00 0.00 46.87 3.69
72 73 7.310113 GGACTAAATGAAGAAGACTCTCAAGGA 60.310 40.741 0.00 0.00 0.00 3.36
73 74 6.816140 GGACTAAATGAAGAAGACTCTCAAGG 59.184 42.308 0.00 0.00 0.00 3.61
74 75 7.610865 AGGACTAAATGAAGAAGACTCTCAAG 58.389 38.462 0.00 0.00 0.00 3.02
75 76 7.546250 AGGACTAAATGAAGAAGACTCTCAA 57.454 36.000 0.00 0.00 0.00 3.02
76 77 8.651589 TTAGGACTAAATGAAGAAGACTCTCA 57.348 34.615 0.00 0.00 0.00 3.27
77 78 9.930693 TTTTAGGACTAAATGAAGAAGACTCTC 57.069 33.333 5.44 0.00 35.27 3.20
80 81 9.004717 GCTTTTTAGGACTAAATGAAGAAGACT 57.995 33.333 15.36 0.00 35.27 3.24
81 82 8.784043 TGCTTTTTAGGACTAAATGAAGAAGAC 58.216 33.333 15.36 8.89 35.27 3.01
82 83 8.918202 TGCTTTTTAGGACTAAATGAAGAAGA 57.082 30.769 15.36 2.27 35.27 2.87
83 84 9.399403 GTTGCTTTTTAGGACTAAATGAAGAAG 57.601 33.333 15.36 11.73 35.27 2.85
84 85 9.131791 AGTTGCTTTTTAGGACTAAATGAAGAA 57.868 29.630 15.36 6.63 35.27 2.52
85 86 8.691661 AGTTGCTTTTTAGGACTAAATGAAGA 57.308 30.769 15.36 4.00 35.27 2.87
86 87 9.750125 AAAGTTGCTTTTTAGGACTAAATGAAG 57.250 29.630 5.44 8.14 35.27 3.02
94 95 8.967918 AGAAACTAAAAGTTGCTTTTTAGGACT 58.032 29.630 21.53 16.60 41.26 3.85
102 103 9.053840 GGACTACTAGAAACTAAAAGTTGCTTT 57.946 33.333 5.63 0.00 41.26 3.51
103 104 7.660617 GGGACTACTAGAAACTAAAAGTTGCTT 59.339 37.037 5.63 0.00 41.26 3.91
104 105 7.016366 AGGGACTACTAGAAACTAAAAGTTGCT 59.984 37.037 5.64 5.64 42.05 3.91
105 106 7.160049 AGGGACTACTAGAAACTAAAAGTTGC 58.840 38.462 0.00 0.00 35.83 4.17
106 107 7.818446 GGAGGGACTACTAGAAACTAAAAGTTG 59.182 40.741 0.00 0.00 41.55 3.16
107 108 7.905265 GGAGGGACTACTAGAAACTAAAAGTT 58.095 38.462 0.00 0.00 41.55 2.66
108 109 7.479352 GGAGGGACTACTAGAAACTAAAAGT 57.521 40.000 0.00 0.00 41.55 2.66
122 123 4.628963 TTAACCAAACAGGAGGGACTAC 57.371 45.455 0.00 0.00 41.55 2.73
123 124 5.649970 TTTTAACCAAACAGGAGGGACTA 57.350 39.130 0.00 0.00 41.55 2.59
125 126 4.647853 ACTTTTTAACCAAACAGGAGGGAC 59.352 41.667 0.00 0.00 41.22 4.46
126 127 4.874199 ACTTTTTAACCAAACAGGAGGGA 58.126 39.130 0.00 0.00 41.22 4.20
127 128 5.607939 AACTTTTTAACCAAACAGGAGGG 57.392 39.130 0.00 0.00 41.22 4.30
128 129 6.873997 AGAAACTTTTTAACCAAACAGGAGG 58.126 36.000 0.00 0.00 41.22 4.30
129 130 9.516314 CTTAGAAACTTTTTAACCAAACAGGAG 57.484 33.333 0.00 0.00 41.22 3.69
130 131 9.245481 TCTTAGAAACTTTTTAACCAAACAGGA 57.755 29.630 0.00 0.00 41.22 3.86
131 132 9.863845 TTCTTAGAAACTTTTTAACCAAACAGG 57.136 29.630 0.00 0.00 45.67 4.00
137 138 9.470399 AGGTCTTTCTTAGAAACTTTTTAACCA 57.530 29.630 2.94 0.00 33.81 3.67
148 149 9.557061 GGAACTAGAAAAGGTCTTTCTTAGAAA 57.443 33.333 7.22 7.22 42.10 2.52
149 150 8.935741 AGGAACTAGAAAAGGTCTTTCTTAGAA 58.064 33.333 5.15 0.00 42.10 2.10
150 151 8.493787 AGGAACTAGAAAAGGTCTTTCTTAGA 57.506 34.615 5.15 0.00 42.10 2.10
151 152 9.642327 GTAGGAACTAGAAAAGGTCTTTCTTAG 57.358 37.037 5.15 6.43 44.14 2.18
152 153 9.151177 TGTAGGAACTAGAAAAGGTCTTTCTTA 57.849 33.333 5.15 0.00 44.14 2.10
153 154 8.030913 TGTAGGAACTAGAAAAGGTCTTTCTT 57.969 34.615 5.15 0.00 44.14 2.52
154 155 7.613551 TGTAGGAACTAGAAAAGGTCTTTCT 57.386 36.000 0.00 5.19 44.14 2.52
155 156 8.095169 TGATGTAGGAACTAGAAAAGGTCTTTC 58.905 37.037 0.00 0.00 44.14 2.62
156 157 7.974504 TGATGTAGGAACTAGAAAAGGTCTTT 58.025 34.615 0.00 0.00 44.14 2.52
157 158 7.554959 TGATGTAGGAACTAGAAAAGGTCTT 57.445 36.000 0.00 0.00 44.14 3.01
158 159 7.554959 TTGATGTAGGAACTAGAAAAGGTCT 57.445 36.000 0.00 0.00 44.14 3.85
159 160 8.617290 TTTTGATGTAGGAACTAGAAAAGGTC 57.383 34.615 0.00 0.00 44.14 3.85
160 161 8.990163 TTTTTGATGTAGGAACTAGAAAAGGT 57.010 30.769 0.00 0.00 44.14 3.50
161 162 9.067986 ACTTTTTGATGTAGGAACTAGAAAAGG 57.932 33.333 0.00 0.00 44.14 3.11
164 165 9.063615 GGAACTTTTTGATGTAGGAACTAGAAA 57.936 33.333 0.00 0.00 44.14 2.52
165 166 8.437575 AGGAACTTTTTGATGTAGGAACTAGAA 58.562 33.333 0.00 0.00 36.99 2.10
166 167 7.878127 CAGGAACTTTTTGATGTAGGAACTAGA 59.122 37.037 0.00 0.00 38.32 2.43
167 168 7.878127 TCAGGAACTTTTTGATGTAGGAACTAG 59.122 37.037 0.00 0.00 38.32 2.57
168 169 7.741785 TCAGGAACTTTTTGATGTAGGAACTA 58.258 34.615 0.00 0.00 36.39 2.24
169 170 6.601332 TCAGGAACTTTTTGATGTAGGAACT 58.399 36.000 0.00 0.00 39.39 3.01
170 171 6.877611 TCAGGAACTTTTTGATGTAGGAAC 57.122 37.500 0.00 0.00 34.60 3.62
171 172 7.889873 TTTCAGGAACTTTTTGATGTAGGAA 57.110 32.000 0.00 0.00 34.60 3.36
172 173 7.340743 TGTTTTCAGGAACTTTTTGATGTAGGA 59.659 33.333 0.00 0.00 34.60 2.94
173 174 7.488322 TGTTTTCAGGAACTTTTTGATGTAGG 58.512 34.615 0.00 0.00 34.60 3.18
174 175 8.925161 TTGTTTTCAGGAACTTTTTGATGTAG 57.075 30.769 0.00 0.00 34.60 2.74
175 176 9.145865 GTTTGTTTTCAGGAACTTTTTGATGTA 57.854 29.630 0.00 0.00 34.60 2.29
176 177 7.659390 TGTTTGTTTTCAGGAACTTTTTGATGT 59.341 29.630 0.00 0.00 34.60 3.06
177 178 7.956943 GTGTTTGTTTTCAGGAACTTTTTGATG 59.043 33.333 0.00 0.00 34.60 3.07
178 179 7.119116 GGTGTTTGTTTTCAGGAACTTTTTGAT 59.881 33.333 0.00 0.00 34.60 2.57
179 180 6.425417 GGTGTTTGTTTTCAGGAACTTTTTGA 59.575 34.615 0.00 0.00 34.60 2.69
180 181 6.348132 GGGTGTTTGTTTTCAGGAACTTTTTG 60.348 38.462 0.00 0.00 34.60 2.44
181 182 5.703592 GGGTGTTTGTTTTCAGGAACTTTTT 59.296 36.000 0.00 0.00 34.60 1.94
182 183 5.242434 GGGTGTTTGTTTTCAGGAACTTTT 58.758 37.500 0.00 0.00 34.60 2.27
183 184 4.323180 GGGGTGTTTGTTTTCAGGAACTTT 60.323 41.667 0.00 0.00 34.60 2.66
184 185 3.196901 GGGGTGTTTGTTTTCAGGAACTT 59.803 43.478 0.00 0.00 34.60 2.66
185 186 2.764010 GGGGTGTTTGTTTTCAGGAACT 59.236 45.455 0.00 0.00 43.88 3.01
186 187 2.159014 GGGGGTGTTTGTTTTCAGGAAC 60.159 50.000 0.00 0.00 0.00 3.62
187 188 2.112190 GGGGGTGTTTGTTTTCAGGAA 58.888 47.619 0.00 0.00 0.00 3.36
188 189 1.289530 AGGGGGTGTTTGTTTTCAGGA 59.710 47.619 0.00 0.00 0.00 3.86
189 190 1.788229 AGGGGGTGTTTGTTTTCAGG 58.212 50.000 0.00 0.00 0.00 3.86
190 191 3.958147 AGTAAGGGGGTGTTTGTTTTCAG 59.042 43.478 0.00 0.00 0.00 3.02
191 192 3.955551 GAGTAAGGGGGTGTTTGTTTTCA 59.044 43.478 0.00 0.00 0.00 2.69
192 193 3.955551 TGAGTAAGGGGGTGTTTGTTTTC 59.044 43.478 0.00 0.00 0.00 2.29
193 194 3.958147 CTGAGTAAGGGGGTGTTTGTTTT 59.042 43.478 0.00 0.00 0.00 2.43
194 195 3.562182 CTGAGTAAGGGGGTGTTTGTTT 58.438 45.455 0.00 0.00 0.00 2.83
195 196 2.751816 GCTGAGTAAGGGGGTGTTTGTT 60.752 50.000 0.00 0.00 0.00 2.83
196 197 1.202891 GCTGAGTAAGGGGGTGTTTGT 60.203 52.381 0.00 0.00 0.00 2.83
197 198 1.534729 GCTGAGTAAGGGGGTGTTTG 58.465 55.000 0.00 0.00 0.00 2.93
198 199 0.404426 GGCTGAGTAAGGGGGTGTTT 59.596 55.000 0.00 0.00 0.00 2.83
199 200 1.498176 GGGCTGAGTAAGGGGGTGTT 61.498 60.000 0.00 0.00 0.00 3.32
200 201 1.923909 GGGCTGAGTAAGGGGGTGT 60.924 63.158 0.00 0.00 0.00 4.16
201 202 2.998949 GGGCTGAGTAAGGGGGTG 59.001 66.667 0.00 0.00 0.00 4.61
202 203 2.172229 TACGGGCTGAGTAAGGGGGT 62.172 60.000 0.00 0.00 0.00 4.95
203 204 1.382146 TACGGGCTGAGTAAGGGGG 60.382 63.158 0.00 0.00 0.00 5.40
204 205 0.396695 TCTACGGGCTGAGTAAGGGG 60.397 60.000 0.00 0.00 0.00 4.79
205 206 1.033574 CTCTACGGGCTGAGTAAGGG 58.966 60.000 0.00 0.00 0.00 3.95
206 207 1.677052 GTCTCTACGGGCTGAGTAAGG 59.323 57.143 0.00 0.00 0.00 2.69
219 220 3.139077 CTGTTGGTTTGTGGGTCTCTAC 58.861 50.000 0.00 0.00 0.00 2.59
261 262 2.542597 ACACACAGCTGCATTTTGTTG 58.457 42.857 15.27 4.24 0.00 3.33
357 380 4.845307 GGGGGAAGAGGGGGAGGG 62.845 77.778 0.00 0.00 0.00 4.30
372 395 1.560146 GTGGAAGGAACTAGGAAGGGG 59.440 57.143 0.00 0.00 38.49 4.79
418 447 2.041244 GGTTCGTTTTTGTCGATGTGC 58.959 47.619 0.00 0.00 37.18 4.57
426 455 3.349022 TCTGACTTGGGTTCGTTTTTGT 58.651 40.909 0.00 0.00 0.00 2.83
470 504 2.569059 CAGGGCTGTTTGATCGATCAT 58.431 47.619 27.75 8.45 36.56 2.45
471 505 2.013563 GCAGGGCTGTTTGATCGATCA 61.014 52.381 23.99 23.99 34.44 2.92
472 506 0.659957 GCAGGGCTGTTTGATCGATC 59.340 55.000 18.72 18.72 0.00 3.69
473 507 0.749454 GGCAGGGCTGTTTGATCGAT 60.749 55.000 0.00 0.00 0.00 3.59
474 508 1.377202 GGCAGGGCTGTTTGATCGA 60.377 57.895 0.00 0.00 0.00 3.59
518 556 2.443887 TAATAATACGGCCGGAGTGC 57.556 50.000 31.76 0.00 0.00 4.40
543 593 7.327275 GTGTTTGGCATTGTTAAACAATCGATA 59.673 33.333 16.59 0.00 44.91 2.92
545 595 5.460419 GTGTTTGGCATTGTTAAACAATCGA 59.540 36.000 16.59 0.00 44.91 3.59
556 606 0.829333 TTGGCTGTGTTTGGCATTGT 59.171 45.000 0.00 0.00 39.67 2.71
558 608 1.412079 TCTTGGCTGTGTTTGGCATT 58.588 45.000 0.00 0.00 39.67 3.56
567 617 0.385390 GTTGGGTGTTCTTGGCTGTG 59.615 55.000 0.00 0.00 0.00 3.66
596 646 6.127338 TGTCTGGAACTCTGGATACACTAATG 60.127 42.308 0.00 0.00 46.17 1.90
604 654 3.506398 TGTGTGTCTGGAACTCTGGATA 58.494 45.455 0.00 0.00 0.00 2.59
607 657 2.620251 TTGTGTGTCTGGAACTCTGG 57.380 50.000 0.00 0.00 0.00 3.86
608 658 5.482006 TGATATTGTGTGTCTGGAACTCTG 58.518 41.667 0.00 0.00 0.00 3.35
609 659 5.247110 ACTGATATTGTGTGTCTGGAACTCT 59.753 40.000 0.00 0.00 0.00 3.24
610 660 5.349817 CACTGATATTGTGTGTCTGGAACTC 59.650 44.000 2.73 0.00 0.00 3.01
611 661 5.240891 CACTGATATTGTGTGTCTGGAACT 58.759 41.667 2.73 0.00 0.00 3.01
612 662 4.393062 CCACTGATATTGTGTGTCTGGAAC 59.607 45.833 8.37 0.00 33.92 3.62
613 663 4.285775 TCCACTGATATTGTGTGTCTGGAA 59.714 41.667 8.37 0.00 33.92 3.53
614 664 3.837731 TCCACTGATATTGTGTGTCTGGA 59.162 43.478 8.37 0.00 33.92 3.86
615 665 4.206477 TCCACTGATATTGTGTGTCTGG 57.794 45.455 8.37 0.00 33.92 3.86
622 672 8.899427 ATCTGTCTTTATCCACTGATATTGTG 57.101 34.615 3.64 3.64 33.54 3.33
670 726 4.083862 GGGTCACCTGCTCCGGAC 62.084 72.222 0.00 0.00 0.00 4.79
714 773 1.070445 CCGGAGGTCTGCATCCATC 59.930 63.158 0.00 0.00 45.23 3.51
715 774 3.234349 CCGGAGGTCTGCATCCAT 58.766 61.111 0.00 0.00 45.23 3.41
742 801 2.619074 GGAAAGGCAAGCATCACCTACT 60.619 50.000 0.00 0.00 32.08 2.57
798 857 1.311651 GGAAGCAAGCAAGGAGGCTC 61.312 60.000 5.78 5.78 45.07 4.70
878 943 8.621286 GTCAGAAGGAATTAAACAAGAAGTGAA 58.379 33.333 0.00 0.00 0.00 3.18
926 991 0.684535 TGCAATGGAGGTCGAAGTGA 59.315 50.000 0.00 0.00 0.00 3.41
928 993 2.501723 AGTATGCAATGGAGGTCGAAGT 59.498 45.455 0.00 0.00 0.00 3.01
929 994 3.185246 AGTATGCAATGGAGGTCGAAG 57.815 47.619 0.00 0.00 0.00 3.79
930 995 3.627395 AAGTATGCAATGGAGGTCGAA 57.373 42.857 0.00 0.00 0.00 3.71
933 998 4.096984 CCAAGAAAGTATGCAATGGAGGTC 59.903 45.833 0.00 0.00 0.00 3.85
934 999 4.019174 CCAAGAAAGTATGCAATGGAGGT 58.981 43.478 0.00 0.00 0.00 3.85
935 1000 4.272489 TCCAAGAAAGTATGCAATGGAGG 58.728 43.478 0.00 0.00 32.10 4.30
949 1015 1.795170 GCCGCAACTGCTCCAAGAAA 61.795 55.000 0.00 0.00 39.32 2.52
956 1022 4.704833 TCCTGGCCGCAACTGCTC 62.705 66.667 0.00 0.00 39.32 4.26
1104 1200 4.406972 TCTGTGGGGAGAGATGAATTACAG 59.593 45.833 0.00 0.00 35.56 2.74
1112 1208 0.907486 TGCTTCTGTGGGGAGAGATG 59.093 55.000 0.00 0.00 0.00 2.90
1140 1236 4.861389 TCGAGTACGAAAACAAAGCAAA 57.139 36.364 0.00 0.00 45.74 3.68
1155 1251 7.043722 GCATCAAACAAAACAACAAATCGAGTA 60.044 33.333 0.00 0.00 0.00 2.59
1156 1252 6.237808 GCATCAAACAAAACAACAAATCGAGT 60.238 34.615 0.00 0.00 0.00 4.18
1159 1255 4.891766 CGCATCAAACAAAACAACAAATCG 59.108 37.500 0.00 0.00 0.00 3.34
1161 1257 5.809562 TCTCGCATCAAACAAAACAACAAAT 59.190 32.000 0.00 0.00 0.00 2.32
1173 1269 4.787598 ACAATTCAAGTCTCGCATCAAAC 58.212 39.130 0.00 0.00 0.00 2.93
1177 1273 4.935885 AGAACAATTCAAGTCTCGCATC 57.064 40.909 0.00 0.00 0.00 3.91
1178 1274 6.992063 ATAAGAACAATTCAAGTCTCGCAT 57.008 33.333 0.00 0.00 0.00 4.73
1179 1275 6.801539 AATAAGAACAATTCAAGTCTCGCA 57.198 33.333 0.00 0.00 0.00 5.10
1181 1277 7.402640 GGCTAATAAGAACAATTCAAGTCTCG 58.597 38.462 0.00 0.00 0.00 4.04
1184 1280 7.073342 ACGGCTAATAAGAACAATTCAAGTC 57.927 36.000 0.00 0.00 0.00 3.01
1185 1281 7.201617 GCTACGGCTAATAAGAACAATTCAAGT 60.202 37.037 0.00 0.00 35.22 3.16
1186 1282 7.126398 GCTACGGCTAATAAGAACAATTCAAG 58.874 38.462 0.00 0.00 35.22 3.02
1215 1311 7.510685 TCAGGGATATACTTGTAGAATCAAGCT 59.489 37.037 0.00 0.00 45.86 3.74
1216 1312 7.671302 TCAGGGATATACTTGTAGAATCAAGC 58.329 38.462 0.00 0.00 45.86 4.01
1217 1313 8.865090 ACTCAGGGATATACTTGTAGAATCAAG 58.135 37.037 0.00 5.12 46.89 3.02
1259 1355 4.130118 ACAGTTGAAGATTCGAAGCAGTT 58.870 39.130 16.78 1.46 0.00 3.16
1260 1356 3.733337 ACAGTTGAAGATTCGAAGCAGT 58.267 40.909 16.78 2.42 0.00 4.40
1267 1363 7.329471 TCATCTAACAGAACAGTTGAAGATTCG 59.671 37.037 0.00 0.00 33.07 3.34
1275 1371 8.763049 TTACAGATCATCTAACAGAACAGTTG 57.237 34.615 0.00 0.00 33.07 3.16
1301 1397 4.847757 CGTATCAAGTTACGAACAGACGAA 59.152 41.667 5.07 0.00 46.02 3.85
1304 1404 3.302699 GGCGTATCAAGTTACGAACAGAC 59.697 47.826 13.19 0.00 46.02 3.51
1326 1426 7.382218 AGGAATTAATGTTCTTTTCAGTTTGCG 59.618 33.333 0.00 0.00 0.00 4.85
1346 1446 7.168219 TCATGTAGCTTTAGTGAACAGGAATT 58.832 34.615 0.00 0.00 29.00 2.17
1347 1447 6.711277 TCATGTAGCTTTAGTGAACAGGAAT 58.289 36.000 0.00 0.00 29.00 3.01
1349 1449 5.738619 TCATGTAGCTTTAGTGAACAGGA 57.261 39.130 0.00 0.00 0.00 3.86
1350 1450 6.428159 AGTTTCATGTAGCTTTAGTGAACAGG 59.572 38.462 0.00 0.00 0.00 4.00
1353 1453 8.758633 TCTAGTTTCATGTAGCTTTAGTGAAC 57.241 34.615 0.00 0.00 0.00 3.18
1355 1455 8.585881 ACTTCTAGTTTCATGTAGCTTTAGTGA 58.414 33.333 0.00 0.00 0.00 3.41
1431 1560 5.423704 TGACCACCCATCGAGTTAATTAA 57.576 39.130 0.00 0.00 0.00 1.40
1437 1566 2.879103 AAATGACCACCCATCGAGTT 57.121 45.000 0.00 0.00 0.00 3.01
1464 1593 8.464404 TGTACAGTACTATGCTCGTAAATCTTT 58.536 33.333 12.07 0.00 0.00 2.52
1477 1606 8.687292 TGGAGGTTAGTATGTACAGTACTATG 57.313 38.462 18.03 0.00 35.30 2.23
1478 1607 9.129532 GTTGGAGGTTAGTATGTACAGTACTAT 57.870 37.037 18.03 6.58 35.30 2.12
1479 1608 7.557719 GGTTGGAGGTTAGTATGTACAGTACTA 59.442 40.741 12.07 15.42 34.43 1.82
1497 1626 3.828451 AGAATCAACACAATGGTTGGAGG 59.172 43.478 12.34 0.00 46.29 4.30
1509 1638 5.556355 TGCATGATCTTCAGAATCAACAC 57.444 39.130 0.00 0.00 0.00 3.32
1577 1706 3.902218 ACAATTGGGGTCTCACCATATG 58.098 45.455 10.83 0.00 41.02 1.78
1600 1729 3.708403 ATGATGAGGTTTGTGCAGAGA 57.292 42.857 0.00 0.00 0.00 3.10
1601 1730 4.216902 TGAAATGATGAGGTTTGTGCAGAG 59.783 41.667 0.00 0.00 0.00 3.35
1602 1731 4.022935 GTGAAATGATGAGGTTTGTGCAGA 60.023 41.667 0.00 0.00 0.00 4.26
1603 1732 4.232221 GTGAAATGATGAGGTTTGTGCAG 58.768 43.478 0.00 0.00 0.00 4.41
1604 1733 3.635836 TGTGAAATGATGAGGTTTGTGCA 59.364 39.130 0.00 0.00 0.00 4.57
1607 1736 4.473444 AGGTGTGAAATGATGAGGTTTGT 58.527 39.130 0.00 0.00 0.00 2.83
1629 1758 5.269554 ACATGAGACATTTAGGGGGAAAA 57.730 39.130 0.00 0.00 0.00 2.29
1633 1762 4.399303 GTGAAACATGAGACATTTAGGGGG 59.601 45.833 0.00 0.00 36.32 5.40
1634 1763 5.009631 TGTGAAACATGAGACATTTAGGGG 58.990 41.667 0.00 0.00 45.67 4.79
1672 1803 1.478105 GAATGGGAATGACCTGGTTGC 59.522 52.381 0.00 0.00 38.98 4.17
1712 1845 1.202336 GCAAGGCCAATCGGAATGAAG 60.202 52.381 5.01 0.00 0.00 3.02
1773 2065 8.587952 AATAACAACAGAAATTAAGCACAACC 57.412 30.769 0.00 0.00 0.00 3.77
1801 2093 6.472163 GGACAAGTTTCAAGTACATGTTTGTG 59.528 38.462 2.30 0.00 36.53 3.33
1823 2115 2.685100 ACTTGAATTCGACGAAGGGAC 58.315 47.619 16.40 7.60 0.00 4.46
1860 2155 6.362551 CACTTCGAAGATCTGTCGTAAAGAAA 59.637 38.462 31.08 11.91 39.52 2.52
1861 2156 5.856986 CACTTCGAAGATCTGTCGTAAAGAA 59.143 40.000 31.08 12.34 39.52 2.52
1862 2157 5.391449 CACTTCGAAGATCTGTCGTAAAGA 58.609 41.667 31.08 7.84 39.52 2.52
1867 2162 1.887198 ACCACTTCGAAGATCTGTCGT 59.113 47.619 31.08 10.54 39.52 4.34
1870 2165 3.444388 GGTAGACCACTTCGAAGATCTGT 59.556 47.826 31.08 19.73 33.35 3.41
1874 2169 2.444421 ACGGTAGACCACTTCGAAGAT 58.556 47.619 31.08 15.66 32.77 2.40
1888 2183 2.027214 GCATTTCGTGTCGTAACGGTAG 59.973 50.000 11.57 3.21 43.73 3.18
1912 2207 0.874390 TGTGAAGCATGTTCTTCGGC 59.126 50.000 8.10 5.18 44.01 5.54
1944 2239 1.018910 TATCGACGCGTTCTGGATGA 58.981 50.000 15.53 3.55 0.00 2.92
2004 2299 8.962679 ACGCTAATTAATGGGAATTGTTCTTTA 58.037 29.630 0.00 0.00 31.51 1.85
2032 2327 4.689345 CGGTTCACTTTTCTTTCTATCGGT 59.311 41.667 0.00 0.00 0.00 4.69
2039 2334 5.052829 GCGTAAAACGGTTCACTTTTCTTTC 60.053 40.000 1.25 0.00 42.82 2.62
2055 2351 2.481185 TCGTGGATTGAAGGCGTAAAAC 59.519 45.455 0.00 0.00 0.00 2.43
2072 2368 1.504359 TTACCAAAGCCGTCTTCGTG 58.496 50.000 0.00 0.00 35.01 4.35
2090 2388 5.075493 ACAGAGGAAAGATGCACTCATTTT 58.925 37.500 0.00 0.00 31.96 1.82
2106 2404 1.423584 TGCAGTTGAAGGACAGAGGA 58.576 50.000 0.00 0.00 0.00 3.71
2235 2548 3.717400 TCTGGTGCTCGTATCTGAATC 57.283 47.619 0.00 0.00 0.00 2.52
2249 2562 5.156355 CACCTCGAATTTGAAATTCTGGTG 58.844 41.667 32.39 32.39 40.32 4.17
2250 2563 4.218417 CCACCTCGAATTTGAAATTCTGGT 59.782 41.667 25.35 25.35 34.96 4.00
2251 2564 4.458989 TCCACCTCGAATTTGAAATTCTGG 59.541 41.667 23.49 24.06 0.00 3.86
2257 2570 6.208402 TGAATGAATCCACCTCGAATTTGAAA 59.792 34.615 0.00 0.00 0.00 2.69
2273 2586 1.517276 CGTCGCGTACCTGAATGAATC 59.483 52.381 5.77 0.00 0.00 2.52
2274 2587 1.133598 TCGTCGCGTACCTGAATGAAT 59.866 47.619 5.77 0.00 0.00 2.57
2275 2588 0.522626 TCGTCGCGTACCTGAATGAA 59.477 50.000 5.77 0.00 0.00 2.57
2276 2589 0.098200 CTCGTCGCGTACCTGAATGA 59.902 55.000 5.77 0.00 0.00 2.57
2277 2590 1.472276 GCTCGTCGCGTACCTGAATG 61.472 60.000 5.77 0.00 0.00 2.67
2422 2735 2.440539 AGCTGTAGGTGTCGTTGAAG 57.559 50.000 0.00 0.00 0.00 3.02
2627 2940 2.324860 CATGAACAAGACGTACGAGCA 58.675 47.619 24.41 8.80 0.00 4.26
2634 2947 1.282248 CGTCGGCATGAACAAGACGT 61.282 55.000 15.51 0.00 46.34 4.34
2637 2950 4.277239 CCGTCGGCATGAACAAGA 57.723 55.556 0.00 0.00 0.00 3.02
2654 2972 0.987715 CATCATCATCCGTCGATCGC 59.012 55.000 11.09 4.79 38.35 4.58
2675 2993 2.515926 CCCCCGATCATATATCAGCG 57.484 55.000 0.00 0.00 0.00 5.18
3014 3337 1.560004 CGATGATGCGACGGAATGGG 61.560 60.000 0.00 0.00 0.00 4.00
3081 3412 6.610830 AGAAGGATCATTCGAGGCTATCATAT 59.389 38.462 13.98 0.00 34.27 1.78
3157 3488 0.319040 CATGGATGGACGACGGCTAG 60.319 60.000 0.00 0.00 0.00 3.42
3195 3531 1.545706 AAACCAGAGAGGCCGAGTCC 61.546 60.000 0.00 0.00 43.14 3.85
3244 3580 2.530177 CACATACAGTGGTCTGCTACG 58.470 52.381 0.00 0.00 44.69 3.51
3320 3671 1.340405 ACATCTCCCACACATTCCTGC 60.340 52.381 0.00 0.00 0.00 4.85
3341 3692 4.158025 AGTGATACCAGTACTACACACTGC 59.842 45.833 14.75 0.00 41.72 4.40
3346 3697 6.694447 TGGAAAAGTGATACCAGTACTACAC 58.306 40.000 0.00 2.03 0.00 2.90
3467 3827 1.448985 TATTGCTCACCCTGTTTCGC 58.551 50.000 0.00 0.00 0.00 4.70
3478 3842 9.955102 AATGATCTAGCTCAAATATATTGCTCA 57.045 29.630 11.00 5.59 35.47 4.26
3577 3943 5.982516 TGCAATGTTTCAAGGTAACATGTTC 59.017 36.000 15.85 6.91 43.44 3.18
3583 3949 4.037446 TGACCTGCAATGTTTCAAGGTAAC 59.963 41.667 0.00 0.00 0.00 2.50
3617 3984 6.657836 ACATTTTATACAACGAGTAGCACC 57.342 37.500 0.00 0.00 35.85 5.01
3679 4049 8.673711 CATAGGGAGTACAATTCATTCGAAAAA 58.326 33.333 0.00 0.00 34.01 1.94
3680 4050 7.827236 ACATAGGGAGTACAATTCATTCGAAAA 59.173 33.333 0.00 0.00 34.01 2.29
3682 4052 6.884832 ACATAGGGAGTACAATTCATTCGAA 58.115 36.000 0.00 0.00 35.05 3.71
3683 4053 6.479972 ACATAGGGAGTACAATTCATTCGA 57.520 37.500 0.00 0.00 0.00 3.71
3684 4054 6.074302 CGAACATAGGGAGTACAATTCATTCG 60.074 42.308 0.00 0.00 0.00 3.34
3685 4055 6.292919 GCGAACATAGGGAGTACAATTCATTC 60.293 42.308 0.00 0.00 0.00 2.67
3686 4056 5.527582 GCGAACATAGGGAGTACAATTCATT 59.472 40.000 0.00 0.00 0.00 2.57
3687 4057 5.057149 GCGAACATAGGGAGTACAATTCAT 58.943 41.667 0.00 0.00 0.00 2.57
3688 4058 4.161565 AGCGAACATAGGGAGTACAATTCA 59.838 41.667 0.00 0.00 0.00 2.57
3689 4059 4.694339 AGCGAACATAGGGAGTACAATTC 58.306 43.478 0.00 0.00 0.00 2.17
3690 4060 4.755266 AGCGAACATAGGGAGTACAATT 57.245 40.909 0.00 0.00 0.00 2.32
3691 4061 4.755266 AAGCGAACATAGGGAGTACAAT 57.245 40.909 0.00 0.00 0.00 2.71
3692 4062 4.546829 AAAGCGAACATAGGGAGTACAA 57.453 40.909 0.00 0.00 0.00 2.41
3693 4063 4.546829 AAAAGCGAACATAGGGAGTACA 57.453 40.909 0.00 0.00 0.00 2.90
3694 4064 7.384387 CCTTATAAAAGCGAACATAGGGAGTAC 59.616 40.741 0.00 0.00 0.00 2.73
3695 4065 7.439381 CCTTATAAAAGCGAACATAGGGAGTA 58.561 38.462 0.00 0.00 0.00 2.59
3696 4066 6.289064 CCTTATAAAAGCGAACATAGGGAGT 58.711 40.000 0.00 0.00 0.00 3.85
3697 4067 5.179555 GCCTTATAAAAGCGAACATAGGGAG 59.820 44.000 0.00 0.00 0.00 4.30
3698 4068 5.061179 GCCTTATAAAAGCGAACATAGGGA 58.939 41.667 0.00 0.00 0.00 4.20
3699 4069 5.063880 AGCCTTATAAAAGCGAACATAGGG 58.936 41.667 0.00 0.00 0.00 3.53
3700 4070 6.619801 AAGCCTTATAAAAGCGAACATAGG 57.380 37.500 0.00 0.00 0.00 2.57
3701 4071 7.472543 ACAAAGCCTTATAAAAGCGAACATAG 58.527 34.615 0.00 0.00 0.00 2.23
3702 4072 7.385778 ACAAAGCCTTATAAAAGCGAACATA 57.614 32.000 0.00 0.00 0.00 2.29
3703 4073 6.267496 ACAAAGCCTTATAAAAGCGAACAT 57.733 33.333 0.00 0.00 0.00 2.71
3704 4074 5.699097 ACAAAGCCTTATAAAAGCGAACA 57.301 34.783 0.00 0.00 0.00 3.18
3705 4075 7.068692 TCTACAAAGCCTTATAAAAGCGAAC 57.931 36.000 0.00 0.00 0.00 3.95
3706 4076 7.335924 ACATCTACAAAGCCTTATAAAAGCGAA 59.664 33.333 0.00 0.00 0.00 4.70
3707 4077 6.821665 ACATCTACAAAGCCTTATAAAAGCGA 59.178 34.615 0.00 0.00 0.00 4.93
3708 4078 7.016361 ACATCTACAAAGCCTTATAAAAGCG 57.984 36.000 2.42 0.00 0.00 4.68
3709 4079 9.290483 GAAACATCTACAAAGCCTTATAAAAGC 57.710 33.333 0.00 0.00 0.00 3.51
3712 4082 9.733556 TCTGAAACATCTACAAAGCCTTATAAA 57.266 29.630 0.00 0.00 0.00 1.40
3713 4083 9.162764 GTCTGAAACATCTACAAAGCCTTATAA 57.837 33.333 0.00 0.00 0.00 0.98
3714 4084 8.318412 TGTCTGAAACATCTACAAAGCCTTATA 58.682 33.333 0.00 0.00 31.20 0.98
3715 4085 7.168219 TGTCTGAAACATCTACAAAGCCTTAT 58.832 34.615 0.00 0.00 31.20 1.73
3716 4086 6.530120 TGTCTGAAACATCTACAAAGCCTTA 58.470 36.000 0.00 0.00 31.20 2.69
3717 4087 5.376625 TGTCTGAAACATCTACAAAGCCTT 58.623 37.500 0.00 0.00 31.20 4.35
3718 4088 4.973168 TGTCTGAAACATCTACAAAGCCT 58.027 39.130 0.00 0.00 31.20 4.58
3719 4089 4.757149 ACTGTCTGAAACATCTACAAAGCC 59.243 41.667 0.00 0.00 37.23 4.35
3720 4090 5.237344 ACACTGTCTGAAACATCTACAAAGC 59.763 40.000 0.00 0.00 37.23 3.51
3721 4091 6.653183 CACACTGTCTGAAACATCTACAAAG 58.347 40.000 0.00 0.00 37.23 2.77
3722 4092 5.007626 GCACACTGTCTGAAACATCTACAAA 59.992 40.000 0.00 0.00 37.23 2.83
3723 4093 4.511454 GCACACTGTCTGAAACATCTACAA 59.489 41.667 0.00 0.00 37.23 2.41
3724 4094 4.058124 GCACACTGTCTGAAACATCTACA 58.942 43.478 0.00 0.00 37.23 2.74
3725 4095 4.058124 TGCACACTGTCTGAAACATCTAC 58.942 43.478 0.00 0.00 37.23 2.59
3726 4096 4.335400 TGCACACTGTCTGAAACATCTA 57.665 40.909 0.00 0.00 37.23 1.98
3727 4097 3.198409 TGCACACTGTCTGAAACATCT 57.802 42.857 0.00 0.00 37.23 2.90
3728 4098 3.969117 TTGCACACTGTCTGAAACATC 57.031 42.857 0.00 0.00 37.23 3.06
3729 4099 4.082300 TGTTTTGCACACTGTCTGAAACAT 60.082 37.500 3.99 0.00 37.23 2.71
3730 4100 3.254411 TGTTTTGCACACTGTCTGAAACA 59.746 39.130 3.99 3.99 34.34 2.83
3731 4101 3.832276 TGTTTTGCACACTGTCTGAAAC 58.168 40.909 0.00 0.00 0.00 2.78
3732 4102 4.233789 GTTGTTTTGCACACTGTCTGAAA 58.766 39.130 0.00 0.00 33.98 2.69
3733 4103 3.254411 TGTTGTTTTGCACACTGTCTGAA 59.746 39.130 0.00 0.00 33.98 3.02
3734 4104 2.816672 TGTTGTTTTGCACACTGTCTGA 59.183 40.909 0.00 0.00 33.98 3.27
3735 4105 2.916716 GTGTTGTTTTGCACACTGTCTG 59.083 45.455 0.00 0.00 33.98 3.51
3736 4106 2.556189 TGTGTTGTTTTGCACACTGTCT 59.444 40.909 4.74 0.00 40.24 3.41
3737 4107 2.940147 TGTGTTGTTTTGCACACTGTC 58.060 42.857 4.74 0.00 40.24 3.51
3738 4108 3.377346 TTGTGTTGTTTTGCACACTGT 57.623 38.095 4.74 0.00 44.12 3.55
3739 4109 4.925061 AATTGTGTTGTTTTGCACACTG 57.075 36.364 4.74 0.00 44.12 3.66
3740 4110 4.993584 TGAAATTGTGTTGTTTTGCACACT 59.006 33.333 4.74 0.00 44.12 3.55
3741 4111 5.078745 GTGAAATTGTGTTGTTTTGCACAC 58.921 37.500 0.00 0.00 44.12 3.82
3742 4112 4.993584 AGTGAAATTGTGTTGTTTTGCACA 59.006 33.333 0.00 0.00 42.95 4.57
3743 4113 5.529014 AGTGAAATTGTGTTGTTTTGCAC 57.471 34.783 0.00 0.00 36.26 4.57
3744 4114 5.468072 ACAAGTGAAATTGTGTTGTTTTGCA 59.532 32.000 0.00 0.00 41.76 4.08
3745 4115 5.925907 ACAAGTGAAATTGTGTTGTTTTGC 58.074 33.333 0.00 0.00 41.76 3.68
3746 4116 7.116090 TCAGACAAGTGAAATTGTGTTGTTTTG 59.884 33.333 0.20 0.00 43.32 2.44
3747 4117 7.151308 TCAGACAAGTGAAATTGTGTTGTTTT 58.849 30.769 0.20 0.00 43.32 2.43
3748 4118 6.686630 TCAGACAAGTGAAATTGTGTTGTTT 58.313 32.000 0.20 0.00 43.32 2.83
3749 4119 6.266168 TCAGACAAGTGAAATTGTGTTGTT 57.734 33.333 0.20 0.00 43.32 2.83
3750 4120 5.895636 TCAGACAAGTGAAATTGTGTTGT 57.104 34.783 0.20 0.00 43.32 3.32
3751 4121 6.237279 CGTTTCAGACAAGTGAAATTGTGTTG 60.237 38.462 0.20 0.52 45.71 3.33
3752 4122 5.799936 CGTTTCAGACAAGTGAAATTGTGTT 59.200 36.000 0.20 0.00 45.71 3.32
3753 4123 5.123186 TCGTTTCAGACAAGTGAAATTGTGT 59.877 36.000 0.20 0.00 45.71 3.72
3754 4124 5.452302 GTCGTTTCAGACAAGTGAAATTGTG 59.548 40.000 0.20 0.00 45.71 3.33
3755 4125 5.354234 AGTCGTTTCAGACAAGTGAAATTGT 59.646 36.000 2.59 0.00 45.71 2.71
3756 4126 5.810525 AGTCGTTTCAGACAAGTGAAATTG 58.189 37.500 2.59 0.24 45.71 2.32
3757 4127 6.436843 AAGTCGTTTCAGACAAGTGAAATT 57.563 33.333 2.59 0.00 45.71 1.82
3758 4128 7.730364 ATAAGTCGTTTCAGACAAGTGAAAT 57.270 32.000 2.59 0.00 45.71 2.17
3759 4129 8.651391 TTATAAGTCGTTTCAGACAAGTGAAA 57.349 30.769 0.00 0.00 42.79 2.69
3760 4130 8.651391 TTTATAAGTCGTTTCAGACAAGTGAA 57.349 30.769 0.00 0.00 43.24 3.18
3761 4131 8.651391 TTTTATAAGTCGTTTCAGACAAGTGA 57.349 30.769 0.00 0.00 43.24 3.41
3762 4132 8.548721 ACTTTTATAAGTCGTTTCAGACAAGTG 58.451 33.333 0.00 0.00 40.60 3.16
3763 4133 8.548721 CACTTTTATAAGTCGTTTCAGACAAGT 58.451 33.333 0.00 0.00 42.67 3.16
3764 4134 8.761497 TCACTTTTATAAGTCGTTTCAGACAAG 58.239 33.333 0.00 0.00 42.67 3.16
3765 4135 8.651391 TCACTTTTATAAGTCGTTTCAGACAA 57.349 30.769 0.00 0.00 42.67 3.18
3766 4136 8.545420 GTTCACTTTTATAAGTCGTTTCAGACA 58.455 33.333 0.00 0.00 42.67 3.41
3767 4137 7.734726 CGTTCACTTTTATAAGTCGTTTCAGAC 59.265 37.037 0.00 0.00 42.67 3.51
3768 4138 7.095940 CCGTTCACTTTTATAAGTCGTTTCAGA 60.096 37.037 0.00 0.00 42.67 3.27
3769 4139 7.007697 CCGTTCACTTTTATAAGTCGTTTCAG 58.992 38.462 0.00 0.00 42.67 3.02
3770 4140 6.700960 TCCGTTCACTTTTATAAGTCGTTTCA 59.299 34.615 0.00 0.00 42.67 2.69
3771 4141 7.109006 TCCGTTCACTTTTATAAGTCGTTTC 57.891 36.000 0.00 0.00 42.67 2.78
3772 4142 6.925165 TCTCCGTTCACTTTTATAAGTCGTTT 59.075 34.615 0.00 0.00 42.67 3.60
3773 4143 6.449698 TCTCCGTTCACTTTTATAAGTCGTT 58.550 36.000 0.00 0.00 42.67 3.85
3774 4144 6.017400 TCTCCGTTCACTTTTATAAGTCGT 57.983 37.500 0.00 0.00 42.67 4.34
3775 4145 6.939551 TTCTCCGTTCACTTTTATAAGTCG 57.060 37.500 0.00 0.00 42.67 4.18
3776 4146 8.307921 ACTTTCTCCGTTCACTTTTATAAGTC 57.692 34.615 0.00 0.00 42.67 3.01
3777 4147 9.939802 ATACTTTCTCCGTTCACTTTTATAAGT 57.060 29.630 0.00 0.00 45.40 2.24
3779 4149 9.932207 TGATACTTTCTCCGTTCACTTTTATAA 57.068 29.630 0.00 0.00 0.00 0.98
3781 4151 9.449719 AATGATACTTTCTCCGTTCACTTTTAT 57.550 29.630 0.00 0.00 0.00 1.40
3782 4152 8.842358 AATGATACTTTCTCCGTTCACTTTTA 57.158 30.769 0.00 0.00 0.00 1.52
3783 4153 7.745620 AATGATACTTTCTCCGTTCACTTTT 57.254 32.000 0.00 0.00 0.00 2.27
3784 4154 7.745620 AAATGATACTTTCTCCGTTCACTTT 57.254 32.000 0.00 0.00 0.00 2.66
3785 4155 7.745620 AAAATGATACTTTCTCCGTTCACTT 57.254 32.000 0.00 0.00 0.00 3.16
3786 4156 7.745620 AAAAATGATACTTTCTCCGTTCACT 57.254 32.000 0.00 0.00 0.00 3.41
3833 4203 5.296531 GTGTGCAGAAATGGTTTTTGGATTT 59.703 36.000 0.00 0.00 0.00 2.17
3837 4207 2.539274 CGTGTGCAGAAATGGTTTTTGG 59.461 45.455 0.00 0.00 0.00 3.28
3838 4208 2.539274 CCGTGTGCAGAAATGGTTTTTG 59.461 45.455 0.00 0.00 0.00 2.44
3839 4209 2.167487 ACCGTGTGCAGAAATGGTTTTT 59.833 40.909 2.66 0.00 31.39 1.94
3840 4210 1.754226 ACCGTGTGCAGAAATGGTTTT 59.246 42.857 2.66 0.00 31.39 2.43
3841 4211 1.398692 ACCGTGTGCAGAAATGGTTT 58.601 45.000 2.66 0.00 31.39 3.27
3842 4212 2.151202 CTACCGTGTGCAGAAATGGTT 58.849 47.619 11.92 0.06 36.98 3.67
3844 4214 1.464608 CACTACCGTGTGCAGAAATGG 59.535 52.381 0.00 0.00 36.39 3.16
3857 4230 4.119136 TCAACATCACATATGCACTACCG 58.881 43.478 1.58 0.00 0.00 4.02
3862 4235 4.818005 TCCAGATCAACATCACATATGCAC 59.182 41.667 1.58 0.00 0.00 4.57
3864 4237 6.039047 ACTTTCCAGATCAACATCACATATGC 59.961 38.462 1.58 0.00 0.00 3.14
3892 4265 9.130661 TCTCAAATGGAAGAACATTTAAACTCA 57.869 29.630 4.10 0.00 46.27 3.41
3930 4303 1.531578 GTTCGTCCAAGCAAACTCCTC 59.468 52.381 0.00 0.00 0.00 3.71
3931 4304 1.141053 AGTTCGTCCAAGCAAACTCCT 59.859 47.619 0.00 0.00 0.00 3.69
3932 4305 1.594331 AGTTCGTCCAAGCAAACTCC 58.406 50.000 0.00 0.00 0.00 3.85
3933 4306 3.692791 AAAGTTCGTCCAAGCAAACTC 57.307 42.857 0.00 0.00 30.99 3.01
3941 4314 6.980978 TCATTTTTGCATTAAAGTTCGTCCAA 59.019 30.769 0.00 0.00 0.00 3.53
3944 4317 7.836512 TGTTCATTTTTGCATTAAAGTTCGTC 58.163 30.769 0.00 0.00 0.00 4.20
3950 4323 6.073112 CCCCACTGTTCATTTTTGCATTAAAG 60.073 38.462 0.00 0.00 0.00 1.85
3954 4327 3.390639 TCCCCACTGTTCATTTTTGCATT 59.609 39.130 0.00 0.00 0.00 3.56
3966 4339 1.081513 TGTACCCCTATCCCCACTGTT 59.918 52.381 0.00 0.00 0.00 3.16
3968 4341 1.344087 ACTGTACCCCTATCCCCACTG 60.344 57.143 0.00 0.00 0.00 3.66
3969 4342 1.024536 ACTGTACCCCTATCCCCACT 58.975 55.000 0.00 0.00 0.00 4.00
3973 4346 2.781403 TACCACTGTACCCCTATCCC 57.219 55.000 0.00 0.00 0.00 3.85
3979 4352 2.092646 TGATTGCATACCACTGTACCCC 60.093 50.000 0.00 0.00 0.00 4.95
3987 5105 4.168760 GCAAACTTCTGATTGCATACCAC 58.831 43.478 9.04 0.00 46.71 4.16
4004 5128 4.440839 AATAAGCCTAGTGCAAGCAAAC 57.559 40.909 0.00 0.00 44.83 2.93
4008 5132 6.038714 ACAGAATTAATAAGCCTAGTGCAAGC 59.961 38.462 0.00 0.00 44.83 4.01
4009 5133 7.559590 ACAGAATTAATAAGCCTAGTGCAAG 57.440 36.000 0.00 0.00 44.83 4.01
4010 5134 7.938140 AACAGAATTAATAAGCCTAGTGCAA 57.062 32.000 0.00 0.00 44.83 4.08
4011 5135 7.067008 GGAAACAGAATTAATAAGCCTAGTGCA 59.933 37.037 6.07 0.00 44.83 4.57
4012 5136 7.418408 GGAAACAGAATTAATAAGCCTAGTGC 58.582 38.462 0.00 0.00 41.71 4.40
4013 5137 7.775561 AGGGAAACAGAATTAATAAGCCTAGTG 59.224 37.037 0.00 0.00 0.00 2.74
4025 5192 8.533569 ACAGAAGAAAAAGGGAAACAGAATTA 57.466 30.769 0.00 0.00 0.00 1.40
4027 5194 8.712228 ATACAGAAGAAAAAGGGAAACAGAAT 57.288 30.769 0.00 0.00 0.00 2.40
4029 5196 9.807921 AATATACAGAAGAAAAAGGGAAACAGA 57.192 29.630 0.00 0.00 0.00 3.41
4065 5232 9.634021 AGGGACCTTTGCAAAATTAAAATAAAA 57.366 25.926 13.84 0.00 0.00 1.52
4074 5241 1.618343 CCGAGGGACCTTTGCAAAATT 59.382 47.619 13.84 2.42 0.00 1.82
4075 5242 1.256812 CCGAGGGACCTTTGCAAAAT 58.743 50.000 13.84 4.23 0.00 1.82
4093 5260 2.550180 GGAGTTCTCTTTGTTGTGAGCC 59.450 50.000 0.00 0.00 0.00 4.70
4094 5261 3.206150 TGGAGTTCTCTTTGTTGTGAGC 58.794 45.455 0.00 0.00 0.00 4.26
4101 5268 5.123227 TCGTCAAATTGGAGTTCTCTTTGT 58.877 37.500 10.53 0.00 0.00 2.83
4112 5280 2.037902 TGCACTACCTCGTCAAATTGGA 59.962 45.455 0.00 0.00 0.00 3.53
4121 5289 1.045407 TTGGTCTTGCACTACCTCGT 58.955 50.000 15.76 0.00 36.67 4.18
4123 5291 1.807142 GCTTTGGTCTTGCACTACCTC 59.193 52.381 15.76 2.15 36.67 3.85
4129 5297 2.668279 CGGTTATGCTTTGGTCTTGCAC 60.668 50.000 0.00 0.00 39.63 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.