Multiple sequence alignment - TraesCS5A01G380400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G380400 chr5A 100.000 6148 0 0 1 6148 577937552 577943699 0.000000e+00 11354.0
1 TraesCS5A01G380400 chr5A 85.769 527 57 12 12 528 645768559 645768041 5.420000e-150 542.0
2 TraesCS5A01G380400 chr5A 93.182 88 3 2 5325 5409 10900678 10900591 6.470000e-25 126.0
3 TraesCS5A01G380400 chr5A 92.308 91 4 1 2605 2692 577940111 577940201 6.470000e-25 126.0
4 TraesCS5A01G380400 chr5A 92.308 91 4 1 2560 2650 577940156 577940243 6.470000e-25 126.0
5 TraesCS5A01G380400 chr5B 93.488 4730 200 42 634 5326 562956895 562961553 0.000000e+00 6929.0
6 TraesCS5A01G380400 chr5B 82.759 348 40 11 5404 5743 562961551 562961886 6.030000e-75 292.0
7 TraesCS5A01G380400 chr5B 93.258 89 4 1 5321 5407 690061522 690061434 5.000000e-26 130.0
8 TraesCS5A01G380400 chr5B 92.308 91 4 1 2605 2692 562958774 562958864 6.470000e-25 126.0
9 TraesCS5A01G380400 chr5B 88.119 101 7 3 5314 5409 386542052 386541952 1.400000e-21 115.0
10 TraesCS5A01G380400 chr5B 93.617 47 2 1 5806 5852 562961929 562961974 1.110000e-07 69.4
11 TraesCS5A01G380400 chr5B 93.023 43 3 0 2650 2692 562958777 562958819 5.140000e-06 63.9
12 TraesCS5A01G380400 chr5B 93.023 43 3 0 2563 2605 562958864 562958906 5.140000e-06 63.9
13 TraesCS5A01G380400 chr5D 92.648 1945 104 19 762 2692 458903127 458905046 0.000000e+00 2763.0
14 TraesCS5A01G380400 chr5D 94.118 1785 89 11 3536 5312 458906084 458907860 0.000000e+00 2700.0
15 TraesCS5A01G380400 chr5D 93.801 984 36 11 2560 3537 458904959 458905923 0.000000e+00 1456.0
16 TraesCS5A01G380400 chr5D 88.636 176 15 5 5974 6148 458908241 458908412 6.240000e-50 209.0
17 TraesCS5A01G380400 chr5D 92.308 91 4 1 2605 2692 458904914 458905004 6.470000e-25 126.0
18 TraesCS5A01G380400 chr5D 93.182 88 3 1 2563 2650 458905004 458905088 6.470000e-25 126.0
19 TraesCS5A01G380400 chr5D 91.954 87 5 2 5325 5411 565188116 565188032 3.010000e-23 121.0
20 TraesCS5A01G380400 chr5D 87.850 107 6 6 532 637 458902267 458902367 1.080000e-22 119.0
21 TraesCS5A01G380400 chr5D 89.655 87 6 3 6057 6141 458908207 458908292 2.340000e-19 108.0
22 TraesCS5A01G380400 chr5D 97.727 44 1 0 689 732 458903076 458903119 6.610000e-10 76.8
23 TraesCS5A01G380400 chr5D 93.023 43 3 0 2563 2605 458905046 458905088 5.140000e-06 63.9
24 TraesCS5A01G380400 chr6B 84.257 794 67 30 2650 3406 660378824 660379596 0.000000e+00 721.0
25 TraesCS5A01G380400 chr6B 85.348 546 70 7 4302 4845 660379625 660380162 1.940000e-154 556.0
26 TraesCS5A01G380400 chr7B 83.818 791 69 26 2650 3406 658201207 658200442 0.000000e+00 697.0
27 TraesCS5A01G380400 chr7B 85.267 543 70 7 4305 4845 658200414 658199880 9.010000e-153 551.0
28 TraesCS5A01G380400 chr7B 84.934 458 55 9 4852 5309 658199559 658199116 9.400000e-123 451.0
29 TraesCS5A01G380400 chr7B 89.286 280 27 2 2328 2605 658201441 658201163 1.270000e-91 348.0
30 TraesCS5A01G380400 chr7B 91.765 85 7 0 5325 5409 122952580 122952496 1.080000e-22 119.0
31 TraesCS5A01G380400 chr7B 91.765 85 7 0 5325 5409 123030600 123030516 1.080000e-22 119.0
32 TraesCS5A01G380400 chr7B 90.323 93 5 3 5320 5408 156955542 156955450 1.080000e-22 119.0
33 TraesCS5A01G380400 chr7B 86.364 88 6 2 1246 1327 658202339 658202252 2.360000e-14 91.6
34 TraesCS5A01G380400 chr3A 88.082 537 52 10 1 529 738233223 738233755 1.450000e-175 627.0
35 TraesCS5A01G380400 chr3A 86.907 527 62 6 1 524 631709140 631709662 8.880000e-163 584.0
36 TraesCS5A01G380400 chr3A 85.261 536 68 9 1 529 77426748 77427279 5.420000e-150 542.0
37 TraesCS5A01G380400 chr3A 77.778 459 28 23 669 1114 20227379 20226982 1.340000e-51 215.0
38 TraesCS5A01G380400 chr3A 87.755 98 6 1 529 626 20215768 20215677 6.520000e-20 110.0
39 TraesCS5A01G380400 chr3A 100.000 41 0 0 721 761 20215630 20215590 6.610000e-10 76.8
40 TraesCS5A01G380400 chr2D 87.218 532 51 12 1 525 624804309 624803788 1.910000e-164 590.0
41 TraesCS5A01G380400 chr2D 92.391 92 4 3 5321 5411 382442506 382442417 1.800000e-25 128.0
42 TraesCS5A01G380400 chr2D 93.103 87 2 4 5322 5407 302262771 302262688 2.330000e-24 124.0
43 TraesCS5A01G380400 chr6D 86.330 534 64 8 1 529 401621732 401621203 1.920000e-159 573.0
44 TraesCS5A01G380400 chr6D 95.238 84 4 0 5323 5406 430139583 430139666 3.870000e-27 134.0
45 TraesCS5A01G380400 chr6D 92.045 88 5 2 5325 5410 293153845 293153932 8.370000e-24 122.0
46 TraesCS5A01G380400 chr6D 92.683 82 6 0 5325 5406 192368185 192368104 1.080000e-22 119.0
47 TraesCS5A01G380400 chr6D 92.683 82 6 0 5325 5406 430139666 430139585 1.080000e-22 119.0
48 TraesCS5A01G380400 chr6D 92.683 82 5 1 5325 5406 10066102 10066022 3.890000e-22 117.0
49 TraesCS5A01G380400 chr6D 91.667 84 6 1 5325 5407 293153927 293153844 1.400000e-21 115.0
50 TraesCS5A01G380400 chr6D 89.362 94 7 2 5316 5406 301102143 301102236 1.400000e-21 115.0
51 TraesCS5A01G380400 chr6D 90.805 87 4 1 5324 5406 333950518 333950604 5.040000e-21 113.0
52 TraesCS5A01G380400 chr6D 90.805 87 4 1 5324 5406 333950605 333950519 5.040000e-21 113.0
53 TraesCS5A01G380400 chr4D 86.174 528 55 13 1 526 385472851 385472340 6.960000e-154 555.0
54 TraesCS5A01G380400 chr4D 78.868 265 39 14 4445 4702 449827902 449827648 4.930000e-36 163.0
55 TraesCS5A01G380400 chr4D 91.111 90 4 1 5322 5407 507164786 507164697 1.080000e-22 119.0
56 TraesCS5A01G380400 chr4D 91.011 89 4 1 5325 5409 5081576 5081664 3.890000e-22 117.0
57 TraesCS5A01G380400 chr2A 87.202 461 51 7 71 528 607873284 607873739 9.140000e-143 518.0
58 TraesCS5A01G380400 chr2A 88.281 128 14 1 1 127 540774692 540774819 1.070000e-32 152.0
59 TraesCS5A01G380400 chr2A 94.118 85 3 1 5324 5406 49541891 49541975 1.800000e-25 128.0
60 TraesCS5A01G380400 chr1A 83.895 534 71 8 1 528 584820401 584819877 4.280000e-136 496.0
61 TraesCS5A01G380400 chr1A 90.110 91 7 2 5325 5413 500979494 500979404 3.890000e-22 117.0
62 TraesCS5A01G380400 chr7A 80.148 675 119 11 4484 5149 40389091 40388423 1.990000e-134 490.0
63 TraesCS5A01G380400 chr7A 95.181 83 3 1 5324 5406 578987752 578987833 5.000000e-26 130.0
64 TraesCS5A01G380400 chr7D 79.878 656 119 9 4500 5149 40850686 40850038 9.330000e-128 468.0
65 TraesCS5A01G380400 chr7D 77.482 413 65 20 3917 4317 40851164 40850768 8.020000e-54 222.0
66 TraesCS5A01G380400 chr7D 93.023 86 2 2 5325 5406 18221787 18221872 8.370000e-24 122.0
67 TraesCS5A01G380400 chr3D 77.586 348 21 11 780 1114 16163043 16163346 2.290000e-34 158.0
68 TraesCS5A01G380400 chr3D 91.954 87 5 2 5321 5406 535978964 535978879 3.010000e-23 121.0
69 TraesCS5A01G380400 chr4A 90.566 106 7 3 5306 5408 460740146 460740041 2.990000e-28 137.0
70 TraesCS5A01G380400 chr1B 93.182 88 5 1 5321 5407 95298217 95298304 1.800000e-25 128.0
71 TraesCS5A01G380400 chr1B 90.526 95 4 2 5325 5414 618002463 618002557 3.010000e-23 121.0
72 TraesCS5A01G380400 chr1D 93.902 82 4 1 5325 5406 351919282 351919202 8.370000e-24 122.0
73 TraesCS5A01G380400 chr1D 92.771 83 5 1 5324 5406 86902054 86902135 1.080000e-22 119.0
74 TraesCS5A01G380400 chr1D 92.683 82 5 1 5325 5406 351919202 351919282 3.890000e-22 117.0
75 TraesCS5A01G380400 chr1D 92.771 83 3 3 5324 5406 418174321 418174400 3.890000e-22 117.0
76 TraesCS5A01G380400 chr1D 89.474 95 5 2 5322 5411 394862510 394862604 1.400000e-21 115.0
77 TraesCS5A01G380400 chr3B 88.462 104 7 2 5313 5411 62673181 62673284 3.010000e-23 121.0
78 TraesCS5A01G380400 chr3B 82.353 136 10 6 856 977 23703447 23703582 8.430000e-19 106.0
79 TraesCS5A01G380400 chr4B 88.776 98 7 1 5313 5406 500868124 500868027 3.890000e-22 117.0
80 TraesCS5A01G380400 chrUn 89.773 88 5 2 5323 5406 296339810 296339897 6.520000e-20 110.0
81 TraesCS5A01G380400 chrUn 88.889 90 6 2 5325 5410 311997106 311997017 2.340000e-19 108.0
82 TraesCS5A01G380400 chrUn 88.172 93 7 2 5322 5410 379298446 379298538 2.340000e-19 108.0
83 TraesCS5A01G380400 chrUn 88.764 89 6 2 5322 5406 101378075 101377987 8.430000e-19 106.0
84 TraesCS5A01G380400 chrUn 88.636 88 6 2 5323 5406 104546090 104546003 3.030000e-18 104.0
85 TraesCS5A01G380400 chrUn 88.506 87 6 2 5324 5406 90968767 90968853 1.090000e-17 102.0
86 TraesCS5A01G380400 chrUn 91.026 78 3 1 5325 5398 100699371 100699448 1.090000e-17 102.0
87 TraesCS5A01G380400 chrUn 88.506 87 6 1 5324 5406 110488237 110488151 1.090000e-17 102.0
88 TraesCS5A01G380400 chrUn 88.506 87 6 2 5324 5406 267226690 267226776 1.090000e-17 102.0
89 TraesCS5A01G380400 chrUn 88.506 87 5 2 5325 5406 100699457 100699371 3.920000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G380400 chr5A 577937552 577943699 6147 False 3868.666667 11354 94.872000 1 6148 3 chr5A.!!$F1 6147
1 TraesCS5A01G380400 chr5A 645768041 645768559 518 True 542.000000 542 85.769000 12 528 1 chr5A.!!$R2 516
2 TraesCS5A01G380400 chr5B 562956895 562961974 5079 False 1257.366667 6929 91.369667 634 5852 6 chr5B.!!$F1 5218
3 TraesCS5A01G380400 chr5D 458902267 458908412 6145 False 774.770000 2763 92.294800 532 6148 10 chr5D.!!$F1 5616
4 TraesCS5A01G380400 chr6B 660378824 660380162 1338 False 638.500000 721 84.802500 2650 4845 2 chr6B.!!$F1 2195
5 TraesCS5A01G380400 chr7B 658199116 658202339 3223 True 427.720000 697 85.933800 1246 5309 5 chr7B.!!$R4 4063
6 TraesCS5A01G380400 chr3A 738233223 738233755 532 False 627.000000 627 88.082000 1 529 1 chr3A.!!$F3 528
7 TraesCS5A01G380400 chr3A 631709140 631709662 522 False 584.000000 584 86.907000 1 524 1 chr3A.!!$F2 523
8 TraesCS5A01G380400 chr3A 77426748 77427279 531 False 542.000000 542 85.261000 1 529 1 chr3A.!!$F1 528
9 TraesCS5A01G380400 chr2D 624803788 624804309 521 True 590.000000 590 87.218000 1 525 1 chr2D.!!$R3 524
10 TraesCS5A01G380400 chr6D 401621203 401621732 529 True 573.000000 573 86.330000 1 529 1 chr6D.!!$R5 528
11 TraesCS5A01G380400 chr4D 385472340 385472851 511 True 555.000000 555 86.174000 1 526 1 chr4D.!!$R1 525
12 TraesCS5A01G380400 chr1A 584819877 584820401 524 True 496.000000 496 83.895000 1 528 1 chr1A.!!$R2 527
13 TraesCS5A01G380400 chr7A 40388423 40389091 668 True 490.000000 490 80.148000 4484 5149 1 chr7A.!!$R1 665
14 TraesCS5A01G380400 chr7D 40850038 40851164 1126 True 345.000000 468 78.680000 3917 5149 2 chr7D.!!$R1 1232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 492 0.172578 CGACACGTGGAGAATGGCTA 59.827 55.0 21.57 0.00 0.00 3.93 F
628 660 0.243907 TCTTTTCGCTCAGGGAGACG 59.756 55.0 0.00 1.13 33.22 4.18 F
759 1461 0.250124 CCGTGAAACTGTACAGGCCA 60.250 55.0 26.12 16.82 31.75 5.36 F
1553 2275 0.318445 GCAAAGAGGTGCTGCAAGTG 60.318 55.0 2.77 0.00 41.51 3.16 F
1557 2279 0.689055 AGAGGTGCTGCAAGTGATGA 59.311 50.0 2.77 0.00 35.30 2.92 F
2183 2915 0.894835 TAGCCGCATCAGTCTCAACA 59.105 50.0 0.00 0.00 0.00 3.33 F
3633 4626 1.322538 GGTTAGCACCCCAGCATTGG 61.323 60.0 0.00 0.00 44.60 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2685 0.031585 CTCCGTCACCGACAACAGAA 59.968 55.000 0.00 0.0 35.63 3.02 R
2300 3032 2.657237 CGACCACCACCACTCTCC 59.343 66.667 0.00 0.0 0.00 3.71 R
2514 3246 7.258022 TCTTCTCGACATTTGAAACATTTGA 57.742 32.000 0.00 0.0 0.00 2.69 R
2930 3711 3.447586 TGATAGAGTTCCTAGCACGCTTT 59.552 43.478 0.00 0.0 38.71 3.51 R
3374 4202 3.698040 AGCATATGCACTTCCTTTCAAGG 59.302 43.478 28.62 0.0 45.16 3.61 R
4137 5144 0.761802 GAGTGCCCCTATTCTCCTGG 59.238 60.000 0.00 0.0 0.00 4.45 R
5595 6944 0.099436 GCTGCCCGAGCTTGTATTTG 59.901 55.000 0.00 0.0 45.21 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 126 2.338015 GGTACGGCCGTGACTCTCA 61.338 63.158 40.02 16.54 0.00 3.27
136 143 1.719117 CACGAAAGCACAACCGTGT 59.281 52.632 0.00 0.00 45.50 4.49
243 256 3.927142 GTGACTATCGCTAAAGCACAACT 59.073 43.478 2.44 0.00 42.21 3.16
276 289 3.064271 CGGAAGAAAAACCGTGACTTTCA 59.936 43.478 0.00 0.00 43.53 2.69
350 375 5.836898 AGAAAGACCGGGGAAAAACTAAAAT 59.163 36.000 6.32 0.00 0.00 1.82
393 418 2.164827 ACCGTTTGAAAAGCCGAAAACT 59.835 40.909 0.00 0.00 31.77 2.66
440 472 2.604686 AAGGGAGCGTCCAGAGCA 60.605 61.111 6.41 0.00 38.64 4.26
460 492 0.172578 CGACACGTGGAGAATGGCTA 59.827 55.000 21.57 0.00 0.00 3.93
488 520 0.739462 CCAAGTGGCGCTGATCGTTA 60.739 55.000 7.64 0.00 41.07 3.18
491 523 2.202690 TGGCGCTGATCGTTACGG 60.203 61.111 7.64 0.00 41.07 4.02
529 561 2.232941 CTCGTTAACTAGTTGCTCCCCA 59.767 50.000 18.56 0.00 0.00 4.96
530 562 2.028748 TCGTTAACTAGTTGCTCCCCAC 60.029 50.000 18.56 2.94 0.00 4.61
546 578 1.372872 CACGACACAGTGCATCGGA 60.373 57.895 17.91 0.00 40.16 4.55
548 580 1.080501 CGACACAGTGCATCGGACT 60.081 57.895 0.00 0.00 32.22 3.85
549 581 1.347097 CGACACAGTGCATCGGACTG 61.347 60.000 13.28 13.28 45.39 3.51
550 582 1.004560 ACACAGTGCATCGGACTGG 60.005 57.895 18.11 10.40 44.39 4.00
551 583 1.742880 CACAGTGCATCGGACTGGG 60.743 63.158 18.11 11.57 44.39 4.45
552 584 2.217038 ACAGTGCATCGGACTGGGT 61.217 57.895 18.11 0.00 44.39 4.51
553 585 1.448540 CAGTGCATCGGACTGGGTC 60.449 63.158 7.67 0.00 37.72 4.46
554 586 2.509336 GTGCATCGGACTGGGTCG 60.509 66.667 0.00 0.00 32.65 4.79
555 587 2.994995 TGCATCGGACTGGGTCGT 60.995 61.111 0.00 0.00 32.65 4.34
556 588 2.509336 GCATCGGACTGGGTCGTG 60.509 66.667 0.00 0.00 32.65 4.35
615 647 2.169144 CCCTTTGGGCCATGATCTTTTC 59.831 50.000 7.26 0.00 35.35 2.29
620 652 1.382522 GGCCATGATCTTTTCGCTCA 58.617 50.000 0.00 0.00 0.00 4.26
624 656 2.420547 CCATGATCTTTTCGCTCAGGGA 60.421 50.000 0.00 0.00 41.03 4.20
625 657 2.680312 TGATCTTTTCGCTCAGGGAG 57.320 50.000 0.00 0.00 0.00 4.30
626 658 2.179427 TGATCTTTTCGCTCAGGGAGA 58.821 47.619 0.00 0.00 0.00 3.71
627 659 2.093973 TGATCTTTTCGCTCAGGGAGAC 60.094 50.000 0.00 0.00 0.00 3.36
628 660 0.243907 TCTTTTCGCTCAGGGAGACG 59.756 55.000 0.00 1.13 33.22 4.18
631 663 3.578968 TTCGCTCAGGGAGACGGGA 62.579 63.158 0.00 0.00 32.96 5.14
632 664 3.522731 CGCTCAGGGAGACGGGAG 61.523 72.222 0.00 0.00 35.13 4.30
647 1012 2.827642 GAGCTGACATGGGCTGCC 60.828 66.667 11.05 11.05 39.05 4.85
687 1052 4.743018 GCTTAAGCTTGAGGCCCA 57.257 55.556 20.38 0.00 43.05 5.36
756 1458 0.599204 ACGCCGTGAAACTGTACAGG 60.599 55.000 26.12 9.14 31.75 4.00
757 1459 1.866925 GCCGTGAAACTGTACAGGC 59.133 57.895 26.12 15.25 36.08 4.85
758 1460 1.574702 GCCGTGAAACTGTACAGGCC 61.575 60.000 26.12 14.60 37.32 5.19
759 1461 0.250124 CCGTGAAACTGTACAGGCCA 60.250 55.000 26.12 16.82 31.75 5.36
760 1462 1.148310 CGTGAAACTGTACAGGCCAG 58.852 55.000 26.12 0.00 36.01 4.85
802 1504 1.519455 GAATCCGACGGCACCTCTG 60.519 63.158 9.66 0.00 0.00 3.35
806 1509 4.803426 CGACGGCACCTCTGCTCC 62.803 72.222 0.00 0.00 43.66 4.70
906 1609 3.125573 CCGACGCTCTCTCCGACA 61.126 66.667 0.00 0.00 0.00 4.35
1023 1732 4.572571 TTGGGCGCGAAGGTGGTT 62.573 61.111 12.10 0.00 0.00 3.67
1081 1790 1.834263 CCCCTACCTTCCACTTCTCAG 59.166 57.143 0.00 0.00 0.00 3.35
1104 1813 0.801836 GCGCACGGGATTTGATTTGG 60.802 55.000 0.30 0.00 0.00 3.28
1213 1926 0.896923 AGCAGCAAGAGGAGAGACAG 59.103 55.000 0.00 0.00 0.00 3.51
1406 2128 1.412710 AGCGCCGAATCTGATAAAGGA 59.587 47.619 2.29 0.00 0.00 3.36
1415 2137 7.272978 CCGAATCTGATAAAGGAAGAGGTAAA 58.727 38.462 0.00 0.00 0.00 2.01
1416 2138 7.934120 CCGAATCTGATAAAGGAAGAGGTAAAT 59.066 37.037 0.00 0.00 0.00 1.40
1417 2139 9.982651 CGAATCTGATAAAGGAAGAGGTAAATA 57.017 33.333 0.00 0.00 0.00 1.40
1452 2174 4.583073 GTGAATTTTGGTTCAGGTGTAGGT 59.417 41.667 0.00 0.00 38.68 3.08
1536 2258 1.378762 GTAGTGGCAAGGGGAAGCA 59.621 57.895 0.00 0.00 0.00 3.91
1538 2260 0.480690 TAGTGGCAAGGGGAAGCAAA 59.519 50.000 0.00 0.00 0.00 3.68
1552 2274 2.036236 GCAAAGAGGTGCTGCAAGT 58.964 52.632 2.77 0.00 41.51 3.16
1553 2275 0.318445 GCAAAGAGGTGCTGCAAGTG 60.318 55.000 2.77 0.00 41.51 3.16
1554 2276 1.311859 CAAAGAGGTGCTGCAAGTGA 58.688 50.000 2.77 0.00 35.30 3.41
1555 2277 1.884579 CAAAGAGGTGCTGCAAGTGAT 59.115 47.619 2.77 0.00 35.30 3.06
1556 2278 1.531423 AAGAGGTGCTGCAAGTGATG 58.469 50.000 2.77 0.00 35.30 3.07
1557 2279 0.689055 AGAGGTGCTGCAAGTGATGA 59.311 50.000 2.77 0.00 35.30 2.92
1558 2280 1.281287 AGAGGTGCTGCAAGTGATGAT 59.719 47.619 2.77 0.00 35.30 2.45
1559 2281 1.400846 GAGGTGCTGCAAGTGATGATG 59.599 52.381 2.77 0.00 35.30 3.07
1560 2282 1.003928 AGGTGCTGCAAGTGATGATGA 59.996 47.619 2.77 0.00 35.30 2.92
1579 2301 6.640518 TGATGATGACGATGATGATGATGAT 58.359 36.000 0.00 0.00 0.00 2.45
1597 2319 5.605488 TGATGATGATGAGGATGAAGAGGAA 59.395 40.000 0.00 0.00 0.00 3.36
1609 2334 1.416030 GAAGAGGAAGAGATGGGAGGC 59.584 57.143 0.00 0.00 0.00 4.70
1639 2364 2.741092 GCGGGTGAGGTTGTCAGA 59.259 61.111 0.00 0.00 35.13 3.27
1758 2483 4.716784 TGAGGCTACACATGAAGAGGTAAT 59.283 41.667 0.00 0.00 0.00 1.89
1761 2486 5.661312 AGGCTACACATGAAGAGGTAATGTA 59.339 40.000 0.00 0.00 33.31 2.29
1762 2487 6.156256 AGGCTACACATGAAGAGGTAATGTAA 59.844 38.462 0.00 0.00 33.31 2.41
1763 2488 6.258068 GGCTACACATGAAGAGGTAATGTAAC 59.742 42.308 0.00 0.00 33.31 2.50
1764 2489 6.816640 GCTACACATGAAGAGGTAATGTAACA 59.183 38.462 0.00 0.00 33.31 2.41
1765 2490 7.010552 GCTACACATGAAGAGGTAATGTAACAG 59.989 40.741 0.00 0.00 33.31 3.16
1953 2685 1.531423 CCAGTCAGTTGCTTGCATCT 58.469 50.000 0.00 0.00 0.00 2.90
2071 2803 3.090790 TGTGCATCACCACATATGCTTT 58.909 40.909 1.58 0.00 46.87 3.51
2082 2814 8.028354 TCACCACATATGCTTTTTCAAATACAG 58.972 33.333 1.58 0.00 0.00 2.74
2183 2915 0.894835 TAGCCGCATCAGTCTCAACA 59.105 50.000 0.00 0.00 0.00 3.33
2300 3032 4.200283 GAGGACCAGCGAGGCGAG 62.200 72.222 0.00 0.00 43.14 5.03
2930 3711 6.403866 ACATTTCCTTGACAATTAGCAACA 57.596 33.333 0.00 0.00 0.00 3.33
2969 3760 4.823442 TCTATCAAACAATGCTGGCATAGG 59.177 41.667 8.55 6.99 35.31 2.57
3002 3793 7.287235 GGACTGTCTATATGGTTAACCTACAGT 59.713 40.741 27.11 27.11 36.44 3.55
3180 4007 5.147767 AGGAAAATAGCTCAACCAGGTTTT 58.852 37.500 0.44 0.00 33.71 2.43
3195 4022 9.757227 CAACCAGGTTTTTCAATCTTATGTTAA 57.243 29.630 0.44 0.00 0.00 2.01
3225 4052 4.653801 TCTTACTAGTTGATGCCATGGCTA 59.346 41.667 35.53 22.71 42.51 3.93
3250 4077 6.672657 ACCTGTTACCTATCCTAAGTTGTGAT 59.327 38.462 0.00 0.00 0.00 3.06
3286 4113 3.506810 CTGCTTCCGTGTTGAAACAAAA 58.493 40.909 0.00 0.00 41.21 2.44
3296 4123 5.953205 CGTGTTGAAACAAAATTTGCTTCAG 59.047 36.000 19.57 8.73 43.93 3.02
3328 4155 4.884164 AGATGCTAAAATTTCTAAGCCGCT 59.116 37.500 14.18 9.95 33.99 5.52
3329 4156 5.358160 AGATGCTAAAATTTCTAAGCCGCTT 59.642 36.000 11.12 11.12 33.99 4.68
3333 4160 2.636768 AATTTCTAAGCCGCTTGTGC 57.363 45.000 16.15 0.00 0.00 4.57
3374 4202 9.485206 TGTTTTACTTATTCTCTGTTCAGTACC 57.515 33.333 0.00 0.00 0.00 3.34
3478 4309 4.300803 GCATTTTTGTCTGTGATGCTTGA 58.699 39.130 0.00 0.00 39.84 3.02
3512 4343 5.476254 TGATGCAACCTCATGTATTCAAACA 59.524 36.000 0.00 0.00 0.00 2.83
3523 4354 9.173021 CTCATGTATTCAAACATACCCTTGTTA 57.827 33.333 0.00 0.00 38.85 2.41
3540 4533 8.822805 ACCCTTGTTATCATTCTGAACTAGTAA 58.177 33.333 0.00 0.00 0.00 2.24
3633 4626 1.322538 GGTTAGCACCCCAGCATTGG 61.323 60.000 0.00 0.00 44.60 3.16
3658 4651 5.544176 CCCAGATGGTATCCATACTGTAGTT 59.456 44.000 17.75 0.00 45.26 2.24
3676 4669 7.012421 ACTGTAGTTCAGAAAAGAAATGTGTCC 59.988 37.037 3.49 0.00 46.27 4.02
3705 4698 4.750952 CATGGCTATGCTGAAATCTGAG 57.249 45.455 0.00 0.00 0.00 3.35
3775 4770 4.688879 TCAATGTCTTAGTTGCCAGTAACG 59.311 41.667 0.00 0.00 35.73 3.18
3934 4931 7.437862 CAGATCTCTAGTTTATTTGTCTGCCTC 59.562 40.741 0.00 0.00 0.00 4.70
3935 4932 6.859112 TCTCTAGTTTATTTGTCTGCCTCT 57.141 37.500 0.00 0.00 0.00 3.69
4137 5144 0.398318 AAAGGACCAGAGAGGCACAC 59.602 55.000 0.00 0.00 43.14 3.82
4367 5381 9.961265 ATACAATTAAGAAATCATCTGTGCATG 57.039 29.630 0.00 0.00 38.79 4.06
4375 5389 1.890489 TCATCTGTGCATGCTGCTTTT 59.110 42.857 20.33 0.00 45.31 2.27
4386 5400 6.753279 GTGCATGCTGCTTTTATAAGAAATCA 59.247 34.615 20.33 0.00 45.31 2.57
4464 5478 3.103738 CGTTGCAGCTCTTATGAATTGC 58.896 45.455 0.00 6.92 34.31 3.56
4466 5480 3.008835 TGCAGCTCTTATGAATTGCCT 57.991 42.857 0.00 0.00 33.40 4.75
4477 5491 9.512435 CTCTTATGAATTGCCTGTATTTTCTTG 57.488 33.333 0.00 0.00 0.00 3.02
4641 5656 3.827008 TCATGGAGACTGTCATAAGCC 57.173 47.619 10.88 3.99 0.00 4.35
4652 5667 3.411446 TGTCATAAGCCTGGTCAAACAG 58.589 45.455 0.00 0.00 38.21 3.16
4709 5724 3.223423 TGCGAAGTTTCAAACAAAGCA 57.777 38.095 11.03 11.03 35.10 3.91
4731 5746 3.910627 ACCCATGTACTTCAAGAAGGTCT 59.089 43.478 13.83 0.00 42.53 3.85
4733 5748 4.020218 CCCATGTACTTCAAGAAGGTCTGA 60.020 45.833 13.83 0.00 42.53 3.27
4775 5796 8.768955 GCATAACTTACTGAGAATAATCTGGTG 58.231 37.037 0.00 0.00 35.54 4.17
4778 5799 6.951971 ACTTACTGAGAATAATCTGGTGCTT 58.048 36.000 0.00 0.00 35.54 3.91
4789 5810 1.027357 CTGGTGCTTCTGTGCTTGTT 58.973 50.000 0.00 0.00 0.00 2.83
4814 5835 9.748708 TTGTTCTAATGAAATTCCTTCTGTTTG 57.251 29.630 0.00 0.00 37.87 2.93
4850 5872 2.028112 CGAAGTTGAGGAGGAATGGTCA 60.028 50.000 0.00 0.00 0.00 4.02
4882 6218 3.067106 TGAAGAAGCTCATTCCAACGAC 58.933 45.455 8.05 0.00 38.84 4.34
4955 6291 4.754667 GGTCTGGACCGCGGGTTC 62.755 72.222 31.76 19.03 42.29 3.62
5169 6505 9.737427 AGTAGAAGATGTGTAAATACAATCTCG 57.263 33.333 13.59 0.00 38.04 4.04
5176 6517 5.872617 TGTGTAAATACAATCTCGGGAACAG 59.127 40.000 0.00 0.00 38.04 3.16
5182 6523 2.158667 ACAATCTCGGGAACAGTTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
5213 6554 1.851658 ATTTGCACCGACAGTTTTGC 58.148 45.000 0.00 0.00 35.45 3.68
5228 6569 3.571401 AGTTTTGCAGGGAAGAGATTGTG 59.429 43.478 0.00 0.00 0.00 3.33
5248 6590 5.976458 TGTGCTGATGTTGTCATGTATCTA 58.024 37.500 0.00 0.00 35.97 1.98
5334 6677 5.671493 ACTAATTCAAATGTACTCCCTCCG 58.329 41.667 0.00 0.00 0.00 4.63
5335 6678 2.396590 TTCAAATGTACTCCCTCCGC 57.603 50.000 0.00 0.00 0.00 5.54
5336 6679 1.568504 TCAAATGTACTCCCTCCGCT 58.431 50.000 0.00 0.00 0.00 5.52
5337 6680 1.480954 TCAAATGTACTCCCTCCGCTC 59.519 52.381 0.00 0.00 0.00 5.03
5338 6681 0.831307 AAATGTACTCCCTCCGCTCC 59.169 55.000 0.00 0.00 0.00 4.70
5339 6682 0.325296 AATGTACTCCCTCCGCTCCA 60.325 55.000 0.00 0.00 0.00 3.86
5340 6683 0.325296 ATGTACTCCCTCCGCTCCAA 60.325 55.000 0.00 0.00 0.00 3.53
5341 6684 0.543410 TGTACTCCCTCCGCTCCAAA 60.543 55.000 0.00 0.00 0.00 3.28
5342 6685 0.831307 GTACTCCCTCCGCTCCAAAT 59.169 55.000 0.00 0.00 0.00 2.32
5343 6686 1.209747 GTACTCCCTCCGCTCCAAATT 59.790 52.381 0.00 0.00 0.00 1.82
5344 6687 1.580059 ACTCCCTCCGCTCCAAATTA 58.420 50.000 0.00 0.00 0.00 1.40
5345 6688 1.209747 ACTCCCTCCGCTCCAAATTAC 59.790 52.381 0.00 0.00 0.00 1.89
5346 6689 1.486726 CTCCCTCCGCTCCAAATTACT 59.513 52.381 0.00 0.00 0.00 2.24
5347 6690 1.485066 TCCCTCCGCTCCAAATTACTC 59.515 52.381 0.00 0.00 0.00 2.59
5348 6691 1.571919 CCTCCGCTCCAAATTACTCG 58.428 55.000 0.00 0.00 0.00 4.18
5349 6692 1.134788 CCTCCGCTCCAAATTACTCGT 60.135 52.381 0.00 0.00 0.00 4.18
5350 6693 2.194271 CTCCGCTCCAAATTACTCGTC 58.806 52.381 0.00 0.00 0.00 4.20
5351 6694 0.921347 CCGCTCCAAATTACTCGTCG 59.079 55.000 0.00 0.00 0.00 5.12
5352 6695 1.625616 CGCTCCAAATTACTCGTCGT 58.374 50.000 0.00 0.00 0.00 4.34
5353 6696 1.320555 CGCTCCAAATTACTCGTCGTG 59.679 52.381 0.00 0.00 0.00 4.35
5354 6697 1.659098 GCTCCAAATTACTCGTCGTGG 59.341 52.381 0.00 0.00 0.00 4.94
5355 6698 2.929592 GCTCCAAATTACTCGTCGTGGT 60.930 50.000 0.00 0.00 0.00 4.16
5356 6699 3.323243 CTCCAAATTACTCGTCGTGGTT 58.677 45.455 0.00 0.00 0.00 3.67
5357 6700 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
5358 6701 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
5359 6702 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
5360 6703 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
5361 6704 4.916099 AATTACTCGTCGTGGTTTTAGC 57.084 40.909 0.00 0.00 0.00 3.09
5362 6705 3.648339 TTACTCGTCGTGGTTTTAGCT 57.352 42.857 0.00 0.00 0.00 3.32
5363 6706 1.779569 ACTCGTCGTGGTTTTAGCTG 58.220 50.000 0.00 0.00 0.00 4.24
5364 6707 1.068127 ACTCGTCGTGGTTTTAGCTGT 59.932 47.619 0.00 0.00 0.00 4.40
5365 6708 2.132762 CTCGTCGTGGTTTTAGCTGTT 58.867 47.619 0.00 0.00 0.00 3.16
5366 6709 1.862201 TCGTCGTGGTTTTAGCTGTTG 59.138 47.619 0.00 0.00 0.00 3.33
5367 6710 1.862201 CGTCGTGGTTTTAGCTGTTGA 59.138 47.619 0.00 0.00 0.00 3.18
5368 6711 2.285756 CGTCGTGGTTTTAGCTGTTGAA 59.714 45.455 0.00 0.00 0.00 2.69
5369 6712 3.614588 GTCGTGGTTTTAGCTGTTGAAC 58.385 45.455 0.00 0.00 0.00 3.18
5370 6713 3.311596 GTCGTGGTTTTAGCTGTTGAACT 59.688 43.478 0.00 0.00 0.00 3.01
5371 6714 4.508861 GTCGTGGTTTTAGCTGTTGAACTA 59.491 41.667 0.00 0.00 0.00 2.24
5372 6715 5.006941 GTCGTGGTTTTAGCTGTTGAACTAA 59.993 40.000 0.00 0.00 0.00 2.24
5373 6716 5.585445 TCGTGGTTTTAGCTGTTGAACTAAA 59.415 36.000 0.00 0.00 36.76 1.85
5374 6717 6.093771 TCGTGGTTTTAGCTGTTGAACTAAAA 59.906 34.615 0.00 4.32 42.88 1.52
5379 6722 3.963383 AGCTGTTGAACTAAAACCACG 57.037 42.857 0.00 0.00 0.00 4.94
5380 6723 3.537580 AGCTGTTGAACTAAAACCACGA 58.462 40.909 0.00 0.00 0.00 4.35
5381 6724 3.311596 AGCTGTTGAACTAAAACCACGAC 59.688 43.478 0.00 0.00 0.00 4.34
5382 6725 3.843510 GCTGTTGAACTAAAACCACGACG 60.844 47.826 0.00 0.00 0.00 5.12
5383 6726 3.519579 TGTTGAACTAAAACCACGACGA 58.480 40.909 0.00 0.00 0.00 4.20
5384 6727 3.552699 TGTTGAACTAAAACCACGACGAG 59.447 43.478 0.00 0.00 0.00 4.18
5385 6728 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
5386 6729 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
5387 6730 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
5388 6731 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
5389 6732 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
5390 6733 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
5391 6734 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
5392 6735 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
5393 6736 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
5394 6737 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
5395 6738 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
5396 6739 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
5397 6740 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
5398 6741 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
5399 6742 3.184541 CGACGAGTAATTTGGAACGGAT 58.815 45.455 0.00 0.00 0.00 4.18
5400 6743 3.000078 CGACGAGTAATTTGGAACGGATG 60.000 47.826 0.00 0.00 0.00 3.51
5401 6744 3.267483 ACGAGTAATTTGGAACGGATGG 58.733 45.455 0.00 0.00 0.00 3.51
5402 6745 3.055675 ACGAGTAATTTGGAACGGATGGA 60.056 43.478 0.00 0.00 0.00 3.41
5403 6746 3.555956 CGAGTAATTTGGAACGGATGGAG 59.444 47.826 0.00 0.00 0.00 3.86
5419 6762 2.343101 TGGAGTATTTTGAAGCGACGG 58.657 47.619 0.00 0.00 0.00 4.79
5438 6781 0.107017 GCATTAGAGGCAGCCCAGAA 60.107 55.000 8.22 0.00 0.00 3.02
5455 6801 4.100344 CCCAGAATGCCATCATTGATCAAA 59.900 41.667 13.09 0.00 42.60 2.69
5456 6802 5.047847 CCAGAATGCCATCATTGATCAAAC 58.952 41.667 13.09 0.00 42.60 2.93
5457 6803 5.163447 CCAGAATGCCATCATTGATCAAACT 60.163 40.000 13.09 0.00 42.60 2.66
5458 6804 6.040054 CCAGAATGCCATCATTGATCAAACTA 59.960 38.462 13.09 1.13 42.60 2.24
5507 6856 2.603075 TATTTTTCAGCAGCAGGGGT 57.397 45.000 0.00 0.00 0.00 4.95
5508 6857 1.260544 ATTTTTCAGCAGCAGGGGTC 58.739 50.000 0.00 0.00 0.00 4.46
5512 6861 0.185901 TTCAGCAGCAGGGGTCTTTT 59.814 50.000 0.00 0.00 0.00 2.27
5513 6862 0.250901 TCAGCAGCAGGGGTCTTTTC 60.251 55.000 0.00 0.00 0.00 2.29
5515 6864 0.480252 AGCAGCAGGGGTCTTTTCTT 59.520 50.000 0.00 0.00 0.00 2.52
5516 6865 0.884514 GCAGCAGGGGTCTTTTCTTC 59.115 55.000 0.00 0.00 0.00 2.87
5521 6870 2.616765 GCAGGGGTCTTTTCTTCCTCTC 60.617 54.545 0.00 0.00 28.38 3.20
5530 6879 1.187087 TTCTTCCTCTCCTTCCTCGC 58.813 55.000 0.00 0.00 0.00 5.03
5533 6882 4.214327 CCTCTCCTTCCTCGCCGC 62.214 72.222 0.00 0.00 0.00 6.53
5552 6901 1.889530 CTCCGGTCGCCTTCTTCCTT 61.890 60.000 0.00 0.00 0.00 3.36
5553 6902 1.741770 CCGGTCGCCTTCTTCCTTG 60.742 63.158 0.00 0.00 0.00 3.61
5557 6906 1.542547 GGTCGCCTTCTTCCTTGACAA 60.543 52.381 0.00 0.00 0.00 3.18
5563 6912 3.142174 CCTTCTTCCTTGACAACCTCAC 58.858 50.000 0.00 0.00 0.00 3.51
5567 6916 2.551270 CTTGACAACCTCACGCGC 59.449 61.111 5.73 0.00 0.00 6.86
5599 6948 3.443045 CCGGCGCCTTGCTCAAAT 61.443 61.111 26.68 0.00 45.43 2.32
5600 6949 2.112198 CCGGCGCCTTGCTCAAATA 61.112 57.895 26.68 0.00 45.43 1.40
5601 6950 1.062525 CGGCGCCTTGCTCAAATAC 59.937 57.895 26.68 0.00 45.43 1.89
5608 6957 2.476854 GCCTTGCTCAAATACAAGCTCG 60.477 50.000 0.00 0.00 41.56 5.03
5623 6972 1.153107 CTCGGGCAGCCATGAATGA 60.153 57.895 15.19 0.00 0.00 2.57
5625 6974 1.750018 CGGGCAGCCATGAATGACA 60.750 57.895 15.19 0.00 0.00 3.58
5626 6975 1.314534 CGGGCAGCCATGAATGACAA 61.315 55.000 15.19 0.00 0.00 3.18
5633 6982 2.218953 CCATGAATGACAATGGCAGC 57.781 50.000 0.00 0.00 0.00 5.25
5659 7008 4.228567 GCTCGTGCCCTAGCTCCC 62.229 72.222 0.00 0.00 40.80 4.30
5689 7045 3.097728 GTCGGACTCACACGCACG 61.098 66.667 0.00 0.00 0.00 5.34
5780 7136 0.537371 CTTTGGGCCCTGTTCGAACT 60.537 55.000 27.32 0.00 0.00 3.01
5788 7144 0.602905 CCTGTTCGAACTCACCCACC 60.603 60.000 27.32 0.00 0.00 4.61
5808 7164 4.643385 CACACGCGCACGAACACC 62.643 66.667 5.73 0.00 43.93 4.16
5809 7165 4.884257 ACACGCGCACGAACACCT 62.884 61.111 5.73 0.00 43.93 4.00
5810 7166 3.636043 CACGCGCACGAACACCTT 61.636 61.111 5.73 0.00 43.93 3.50
5858 7229 3.055719 CGTGCCCAGCAACGGATT 61.056 61.111 0.00 0.00 41.47 3.01
5859 7230 2.877691 GTGCCCAGCAACGGATTC 59.122 61.111 0.00 0.00 41.47 2.52
5860 7231 1.971167 GTGCCCAGCAACGGATTCA 60.971 57.895 0.00 0.00 41.47 2.57
5861 7232 1.228398 TGCCCAGCAACGGATTCAA 60.228 52.632 0.00 0.00 34.76 2.69
5862 7233 1.243342 TGCCCAGCAACGGATTCAAG 61.243 55.000 0.00 0.00 34.76 3.02
5863 7234 1.937546 GCCCAGCAACGGATTCAAGG 61.938 60.000 0.00 0.00 0.00 3.61
5864 7235 1.508088 CCAGCAACGGATTCAAGGC 59.492 57.895 0.00 0.00 0.00 4.35
5865 7236 1.508088 CAGCAACGGATTCAAGGCC 59.492 57.895 0.00 0.00 0.00 5.19
5870 7241 4.540153 CGGATTCAAGGCCGTGAT 57.460 55.556 22.47 12.17 42.49 3.06
5871 7242 2.311294 CGGATTCAAGGCCGTGATC 58.689 57.895 22.47 19.01 42.49 2.92
5872 7243 0.179073 CGGATTCAAGGCCGTGATCT 60.179 55.000 22.47 12.68 42.49 2.75
5873 7244 1.743772 CGGATTCAAGGCCGTGATCTT 60.744 52.381 22.47 10.31 42.49 2.40
5874 7245 2.369394 GGATTCAAGGCCGTGATCTTT 58.631 47.619 22.47 7.82 0.00 2.52
5875 7246 2.755103 GGATTCAAGGCCGTGATCTTTT 59.245 45.455 22.47 5.37 0.00 2.27
5876 7247 3.181496 GGATTCAAGGCCGTGATCTTTTC 60.181 47.826 22.47 13.16 0.00 2.29
5897 7268 5.272283 TCTTCTTGTTTTCGTGTAGACCT 57.728 39.130 0.00 0.00 0.00 3.85
5920 7291 1.519898 GCCCATGCCTCAAATTGCG 60.520 57.895 0.00 0.00 0.00 4.85
5938 7309 3.188786 CCGCGCTGCTACTTGTCC 61.189 66.667 5.56 0.00 0.00 4.02
5949 7320 2.249309 CTTGTCCGCAAGCACACG 59.751 61.111 0.00 0.00 44.54 4.49
5954 7325 4.465512 CCGCAAGCACACGCATCC 62.466 66.667 0.00 0.00 42.27 3.51
5958 7329 1.440850 CAAGCACACGCATCCAACG 60.441 57.895 0.00 0.00 42.27 4.10
5998 7400 6.058833 TCCTTTTTGGGTTTATTTTGCCTTC 58.941 36.000 0.00 0.00 36.20 3.46
6000 7402 6.319911 CCTTTTTGGGTTTATTTTGCCTTCAA 59.680 34.615 0.00 0.00 0.00 2.69
6008 7411 7.351981 GGTTTATTTTGCCTTCAATTGTTCAC 58.648 34.615 5.13 0.00 31.33 3.18
6039 7442 2.070650 GGGTCCCACGCCTCCTATT 61.071 63.158 1.78 0.00 0.00 1.73
6074 7477 1.550524 TCTGATTGACCTTGACCTCGG 59.449 52.381 0.00 0.00 0.00 4.63
6075 7478 0.613260 TGATTGACCTTGACCTCGGG 59.387 55.000 0.00 0.00 0.00 5.14
6092 7495 3.822192 GGGCGCGGGTTCAAATCC 61.822 66.667 8.83 0.00 0.00 3.01
6095 7498 1.584495 GCGCGGGTTCAAATCCTTT 59.416 52.632 8.83 0.00 0.00 3.11
6100 7503 2.870035 GCGGGTTCAAATCCTTTTTGGG 60.870 50.000 0.00 0.00 36.20 4.12
6104 7507 5.453480 CGGGTTCAAATCCTTTTTGGGTTTA 60.453 40.000 0.00 0.00 46.79 2.01
6108 7511 8.908903 GGTTCAAATCCTTTTTGGGTTTATTTT 58.091 29.630 0.00 0.00 46.79 1.82
6111 7514 8.907885 TCAAATCCTTTTTGGGTTTATTTTTGG 58.092 29.630 0.00 0.00 46.79 3.28
6112 7515 6.892658 ATCCTTTTTGGGTTTATTTTTGGC 57.107 33.333 0.00 0.00 36.20 4.52
6114 7517 6.427441 TCCTTTTTGGGTTTATTTTTGGCTT 58.573 32.000 0.00 0.00 36.20 4.35
6115 7518 6.892456 TCCTTTTTGGGTTTATTTTTGGCTTT 59.108 30.769 0.00 0.00 36.20 3.51
6116 7519 8.053355 TCCTTTTTGGGTTTATTTTTGGCTTTA 58.947 29.630 0.00 0.00 36.20 1.85
6133 7536 5.417580 TGGCTTTAATTGTTCACCCTATGAC 59.582 40.000 0.00 0.00 36.92 3.06
6137 7540 8.850156 GCTTTAATTGTTCACCCTATGACATAT 58.150 33.333 0.00 0.00 36.92 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 110 3.271014 GTGAGAGTCACGGCCGTA 58.729 61.111 33.70 16.87 37.67 4.02
136 143 1.864711 CGGTTTTGCTTTCGTGAGAGA 59.135 47.619 0.00 0.00 43.69 3.10
243 256 2.094757 TTTCTTCCGCGAGAGGCACA 62.095 55.000 8.23 0.00 43.84 4.57
440 472 1.374252 GCCATTCTCCACGTGTCGT 60.374 57.895 15.65 0.00 42.36 4.34
451 483 3.071580 GCGCACTCTTAGCCATTCT 57.928 52.632 0.30 0.00 0.00 2.40
529 561 1.372997 GTCCGATGCACTGTGTCGT 60.373 57.895 16.35 7.98 33.77 4.34
530 562 1.080501 AGTCCGATGCACTGTGTCG 60.081 57.895 9.86 11.26 35.29 4.35
554 586 2.950172 ATTTGACGCGCACGGTCAC 61.950 57.895 14.94 0.00 46.04 3.67
555 587 2.663520 ATTTGACGCGCACGGTCA 60.664 55.556 5.73 10.61 46.04 4.02
556 588 2.202171 CATTTGACGCGCACGGTC 60.202 61.111 5.73 7.67 46.04 4.79
605 637 2.768527 TCTCCCTGAGCGAAAAGATCAT 59.231 45.455 0.00 0.00 45.06 2.45
615 647 3.522731 CTCCCGTCTCCCTGAGCG 61.523 72.222 0.00 0.00 0.00 5.03
620 652 2.363147 GTCAGCTCCCGTCTCCCT 60.363 66.667 0.00 0.00 0.00 4.20
624 656 2.362369 CCCATGTCAGCTCCCGTCT 61.362 63.158 0.00 0.00 0.00 4.18
625 657 2.187946 CCCATGTCAGCTCCCGTC 59.812 66.667 0.00 0.00 0.00 4.79
626 658 4.101448 GCCCATGTCAGCTCCCGT 62.101 66.667 0.00 0.00 0.00 5.28
627 659 3.790437 AGCCCATGTCAGCTCCCG 61.790 66.667 0.00 0.00 32.71 5.14
628 660 2.124403 CAGCCCATGTCAGCTCCC 60.124 66.667 0.00 0.00 37.18 4.30
631 663 4.790962 CGGCAGCCCATGTCAGCT 62.791 66.667 5.63 0.00 40.89 4.24
647 1012 2.593346 AGCTTAAGAGAGGATGCACG 57.407 50.000 6.67 0.00 0.00 5.34
684 1049 3.512154 TTTGCTGGACTGGGCTGGG 62.512 63.158 0.00 0.00 0.00 4.45
685 1050 2.115910 TTTGCTGGACTGGGCTGG 59.884 61.111 0.00 0.00 0.00 4.85
686 1051 1.521450 CTGTTTGCTGGACTGGGCTG 61.521 60.000 0.00 0.00 0.00 4.85
687 1052 1.228367 CTGTTTGCTGGACTGGGCT 60.228 57.895 0.00 0.00 0.00 5.19
694 1059 1.228245 GGCTGTCCTGTTTGCTGGA 60.228 57.895 0.00 0.00 39.90 3.86
756 1458 3.977244 CGGTTGCAACACCCTGGC 61.977 66.667 29.55 10.45 32.48 4.85
757 1459 2.203280 TCGGTTGCAACACCCTGG 60.203 61.111 29.55 11.75 32.48 4.45
758 1460 2.551912 GGTCGGTTGCAACACCCTG 61.552 63.158 29.55 13.90 32.48 4.45
759 1461 2.203294 GGTCGGTTGCAACACCCT 60.203 61.111 29.55 0.00 32.48 4.34
760 1462 3.656045 CGGTCGGTTGCAACACCC 61.656 66.667 29.55 22.50 32.48 4.61
896 1599 2.305052 TCTGGTCTACTTGTCGGAGAGA 59.695 50.000 0.00 0.00 36.95 3.10
904 1607 1.433592 AGAGGGGTCTGGTCTACTTGT 59.566 52.381 0.00 0.00 0.00 3.16
906 1609 1.007359 GGAGAGGGGTCTGGTCTACTT 59.993 57.143 0.00 0.00 0.00 2.24
951 1654 3.213402 GAGAGGCGGAGGAGGTCG 61.213 72.222 0.00 0.00 0.00 4.79
1006 1715 4.572571 AACCACCTTCGCGCCCAA 62.573 61.111 0.00 0.00 0.00 4.12
1081 1790 1.369091 ATCAAATCCCGTGCGCAGAC 61.369 55.000 12.22 0.00 0.00 3.51
1213 1926 3.855853 GCCTCCGCTTCTCCTCCC 61.856 72.222 0.00 0.00 0.00 4.30
1416 2138 9.843334 GAACCAAAATTCACCACGTTTATTATA 57.157 29.630 0.00 0.00 0.00 0.98
1417 2139 8.361139 TGAACCAAAATTCACCACGTTTATTAT 58.639 29.630 0.00 0.00 33.62 1.28
1420 2142 6.150396 TGAACCAAAATTCACCACGTTTAT 57.850 33.333 0.00 0.00 33.62 1.40
1432 2154 4.340950 CACACCTACACCTGAACCAAAATT 59.659 41.667 0.00 0.00 0.00 1.82
1452 2174 1.136828 ACCCTACTGACCAAAGCACA 58.863 50.000 0.00 0.00 0.00 4.57
1536 2258 1.884579 CATCACTTGCAGCACCTCTTT 59.115 47.619 0.00 0.00 0.00 2.52
1538 2260 0.689055 TCATCACTTGCAGCACCTCT 59.311 50.000 0.00 0.00 0.00 3.69
1552 2274 6.032956 TCATCATCATCGTCATCATCATCA 57.967 37.500 0.00 0.00 0.00 3.07
1553 2275 6.757010 TCATCATCATCATCGTCATCATCATC 59.243 38.462 0.00 0.00 0.00 2.92
1554 2276 6.640518 TCATCATCATCATCGTCATCATCAT 58.359 36.000 0.00 0.00 0.00 2.45
1555 2277 6.032956 TCATCATCATCATCGTCATCATCA 57.967 37.500 0.00 0.00 0.00 3.07
1556 2278 6.757010 TCATCATCATCATCATCGTCATCATC 59.243 38.462 0.00 0.00 0.00 2.92
1557 2279 6.640518 TCATCATCATCATCATCGTCATCAT 58.359 36.000 0.00 0.00 0.00 2.45
1558 2280 6.032956 TCATCATCATCATCATCGTCATCA 57.967 37.500 0.00 0.00 0.00 3.07
1559 2281 6.757010 TCATCATCATCATCATCATCGTCATC 59.243 38.462 0.00 0.00 0.00 2.92
1560 2282 6.640518 TCATCATCATCATCATCATCGTCAT 58.359 36.000 0.00 0.00 0.00 3.06
1579 2301 4.876580 TCTCTTCCTCTTCATCCTCATCA 58.123 43.478 0.00 0.00 0.00 3.07
1597 2319 2.835431 CCGTCGCCTCCCATCTCT 60.835 66.667 0.00 0.00 0.00 3.10
1625 2350 2.368875 TCTCCTTTCTGACAACCTCACC 59.631 50.000 0.00 0.00 0.00 4.02
1639 2364 2.625087 CCATTCAAGGCCCATCTCCTTT 60.625 50.000 0.00 0.00 41.73 3.11
1953 2685 0.031585 CTCCGTCACCGACAACAGAA 59.968 55.000 0.00 0.00 35.63 3.02
2082 2814 8.751242 AGAAGTTAGAGGATGACTACCTAAAAC 58.249 37.037 0.00 0.00 37.93 2.43
2089 2821 7.576861 AGCTTAGAAGTTAGAGGATGACTAC 57.423 40.000 0.00 0.00 0.00 2.73
2094 2826 9.823647 TTGAATAAGCTTAGAAGTTAGAGGATG 57.176 33.333 12.54 0.00 0.00 3.51
2097 2829 9.823647 TGATTGAATAAGCTTAGAAGTTAGAGG 57.176 33.333 12.54 0.00 0.00 3.69
2300 3032 2.657237 CGACCACCACCACTCTCC 59.343 66.667 0.00 0.00 0.00 3.71
2514 3246 7.258022 TCTTCTCGACATTTGAAACATTTGA 57.742 32.000 0.00 0.00 0.00 2.69
2930 3711 3.447586 TGATAGAGTTCCTAGCACGCTTT 59.552 43.478 0.00 0.00 38.71 3.51
3002 3793 7.432148 TTTGATAGAGCCACTGTATCCTAAA 57.568 36.000 8.71 2.67 36.35 1.85
3195 4022 8.627403 CATGGCATCAACTAGTAAGATGAATTT 58.373 33.333 28.76 14.70 41.18 1.82
3218 4045 3.904339 AGGATAGGTAACAGGTAGCCATG 59.096 47.826 0.00 0.00 41.41 3.66
3225 4052 6.021030 TCACAACTTAGGATAGGTAACAGGT 58.979 40.000 0.00 0.00 41.41 4.00
3286 4113 4.657814 TCTTAACCTCCCTGAAGCAAAT 57.342 40.909 0.00 0.00 0.00 2.32
3296 4123 7.646548 AGAAATTTTAGCATCTTAACCTCCC 57.353 36.000 0.00 0.00 0.00 4.30
3374 4202 3.698040 AGCATATGCACTTCCTTTCAAGG 59.302 43.478 28.62 0.00 45.16 3.61
3478 4309 4.401022 TGAGGTTGCATCACTTCTTCAAT 58.599 39.130 2.78 0.00 0.00 2.57
3572 4565 4.492494 TCACATCATATGACAAGCTGGT 57.508 40.909 7.78 0.00 0.00 4.00
3576 4569 5.008316 TGCAGAATCACATCATATGACAAGC 59.992 40.000 7.78 3.19 0.00 4.01
3633 4626 2.639839 ACAGTATGGATACCATCTGGGC 59.360 50.000 21.60 7.53 40.74 5.36
3636 4629 7.231519 TCTGAACTACAGTATGGATACCATCTG 59.768 40.741 18.80 18.80 42.68 2.90
3658 4651 3.210227 TGCGGACACATTTCTTTTCTGA 58.790 40.909 0.00 0.00 0.00 3.27
3703 4696 3.583806 CGGTGGATGATTGCTATCTCTC 58.416 50.000 9.55 6.29 0.00 3.20
3705 4698 2.072298 GCGGTGGATGATTGCTATCTC 58.928 52.381 9.55 4.78 0.00 2.75
3775 4770 5.288543 GCATACAGCTATGCCTGATAAAC 57.711 43.478 9.91 0.00 46.80 2.01
3867 4864 1.237533 CACACAGCAATACAGGTGCA 58.762 50.000 0.00 0.00 44.74 4.57
3934 4931 6.303970 CAGTTGAAAAAGACAATATGCGTCAG 59.696 38.462 7.96 0.00 35.77 3.51
3935 4932 6.142139 CAGTTGAAAAAGACAATATGCGTCA 58.858 36.000 7.96 0.00 35.77 4.35
4137 5144 0.761802 GAGTGCCCCTATTCTCCTGG 59.238 60.000 0.00 0.00 0.00 4.45
4341 5355 9.961265 CATGCACAGATGATTTCTTAATTGTAT 57.039 29.630 0.00 0.00 29.93 2.29
4367 5381 6.254373 GCAGGTTGATTTCTTATAAAAGCAGC 59.746 38.462 0.00 0.00 36.08 5.25
4375 5389 8.514594 CAAGTTGAAGCAGGTTGATTTCTTATA 58.485 33.333 0.00 0.00 0.00 0.98
4386 5400 3.491447 GCACAATCAAGTTGAAGCAGGTT 60.491 43.478 10.14 0.00 40.37 3.50
4494 5508 5.462034 TGCTGCAAACATTAAAAACACAC 57.538 34.783 0.00 0.00 0.00 3.82
4583 5598 0.518636 GCTGCGCAAACATCTTCAGA 59.481 50.000 13.05 0.00 0.00 3.27
4641 5656 0.535780 TGCCTCTGCTGTTTGACCAG 60.536 55.000 0.00 0.00 38.71 4.00
4652 5667 1.407618 TCAATCATGCAATGCCTCTGC 59.592 47.619 1.53 0.00 46.21 4.26
4709 5724 3.910627 AGACCTTCTTGAAGTACATGGGT 59.089 43.478 9.21 0.00 0.00 4.51
4775 5796 4.552166 TTAGAACAACAAGCACAGAAGC 57.448 40.909 0.00 0.00 0.00 3.86
4778 5799 6.691754 TTTCATTAGAACAACAAGCACAGA 57.308 33.333 0.00 0.00 32.39 3.41
4789 5810 7.867403 GCAAACAGAAGGAATTTCATTAGAACA 59.133 33.333 0.00 0.00 38.31 3.18
4814 5835 3.411418 TTCGTCGATCGCCTGGAGC 62.411 63.158 11.09 0.00 39.67 4.70
4850 5872 1.274728 AGCTTCTTCATCTCGTGCTGT 59.725 47.619 0.00 0.00 0.00 4.40
5169 6505 3.400255 GTGAGTCTACCAAACTGTTCCC 58.600 50.000 0.00 0.00 0.00 3.97
5176 6517 4.219033 CAAATTGCGTGAGTCTACCAAAC 58.781 43.478 0.00 0.00 0.00 2.93
5213 6554 2.775911 TCAGCACAATCTCTTCCCTG 57.224 50.000 0.00 0.00 0.00 4.45
5228 6569 7.440556 AGAACATAGATACATGACAACATCAGC 59.559 37.037 0.00 0.00 41.91 4.26
5248 6590 7.725251 TCAACCAGAAAAGCATTTAAGAACAT 58.275 30.769 0.00 0.00 37.28 2.71
5279 6621 5.059161 TCACAGCTATATCCTGTCAAATGC 58.941 41.667 6.09 0.00 41.34 3.56
5315 6658 2.505819 AGCGGAGGGAGTACATTTGAAT 59.494 45.455 0.00 0.00 0.00 2.57
5324 6667 1.580059 AATTTGGAGCGGAGGGAGTA 58.420 50.000 0.00 0.00 0.00 2.59
5325 6668 1.209747 GTAATTTGGAGCGGAGGGAGT 59.790 52.381 0.00 0.00 0.00 3.85
5326 6669 1.486726 AGTAATTTGGAGCGGAGGGAG 59.513 52.381 0.00 0.00 0.00 4.30
5327 6670 1.485066 GAGTAATTTGGAGCGGAGGGA 59.515 52.381 0.00 0.00 0.00 4.20
5328 6671 1.806623 CGAGTAATTTGGAGCGGAGGG 60.807 57.143 0.00 0.00 0.00 4.30
5329 6672 1.134788 ACGAGTAATTTGGAGCGGAGG 60.135 52.381 0.00 0.00 0.00 4.30
5330 6673 2.194271 GACGAGTAATTTGGAGCGGAG 58.806 52.381 0.00 0.00 0.00 4.63
5331 6674 1.468565 CGACGAGTAATTTGGAGCGGA 60.469 52.381 0.00 0.00 0.00 5.54
5332 6675 0.921347 CGACGAGTAATTTGGAGCGG 59.079 55.000 0.00 0.00 0.00 5.52
5333 6676 1.320555 CACGACGAGTAATTTGGAGCG 59.679 52.381 0.00 0.00 0.00 5.03
5334 6677 1.659098 CCACGACGAGTAATTTGGAGC 59.341 52.381 0.00 0.00 0.00 4.70
5335 6678 2.955614 ACCACGACGAGTAATTTGGAG 58.044 47.619 0.00 0.00 0.00 3.86
5336 6679 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
5337 6680 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
5338 6681 5.077424 GCTAAAACCACGACGAGTAATTTG 58.923 41.667 0.00 1.17 0.00 2.32
5339 6682 4.992951 AGCTAAAACCACGACGAGTAATTT 59.007 37.500 0.00 0.34 0.00 1.82
5340 6683 4.387862 CAGCTAAAACCACGACGAGTAATT 59.612 41.667 0.00 1.08 0.00 1.40
5341 6684 3.924686 CAGCTAAAACCACGACGAGTAAT 59.075 43.478 0.00 0.00 0.00 1.89
5342 6685 3.243501 ACAGCTAAAACCACGACGAGTAA 60.244 43.478 0.00 0.00 0.00 2.24
5343 6686 2.294233 ACAGCTAAAACCACGACGAGTA 59.706 45.455 0.00 0.00 0.00 2.59
5344 6687 1.068127 ACAGCTAAAACCACGACGAGT 59.932 47.619 0.00 0.00 0.00 4.18
5345 6688 1.779569 ACAGCTAAAACCACGACGAG 58.220 50.000 0.00 0.00 0.00 4.18
5346 6689 1.862201 CAACAGCTAAAACCACGACGA 59.138 47.619 0.00 0.00 0.00 4.20
5347 6690 1.862201 TCAACAGCTAAAACCACGACG 59.138 47.619 0.00 0.00 0.00 5.12
5348 6691 3.311596 AGTTCAACAGCTAAAACCACGAC 59.688 43.478 0.00 0.00 0.00 4.34
5349 6692 3.537580 AGTTCAACAGCTAAAACCACGA 58.462 40.909 0.00 0.00 0.00 4.35
5350 6693 3.963383 AGTTCAACAGCTAAAACCACG 57.037 42.857 0.00 0.00 0.00 4.94
5355 6698 6.093771 TCGTGGTTTTAGTTCAACAGCTAAAA 59.906 34.615 0.00 0.00 41.80 1.52
5356 6699 5.585445 TCGTGGTTTTAGTTCAACAGCTAAA 59.415 36.000 0.00 0.00 35.96 1.85
5357 6700 5.006941 GTCGTGGTTTTAGTTCAACAGCTAA 59.993 40.000 0.00 0.00 0.00 3.09
5358 6701 4.508861 GTCGTGGTTTTAGTTCAACAGCTA 59.491 41.667 0.00 0.00 0.00 3.32
5359 6702 3.311596 GTCGTGGTTTTAGTTCAACAGCT 59.688 43.478 0.00 0.00 0.00 4.24
5360 6703 3.614588 GTCGTGGTTTTAGTTCAACAGC 58.385 45.455 0.00 0.00 0.00 4.40
5361 6704 3.552699 TCGTCGTGGTTTTAGTTCAACAG 59.447 43.478 0.00 0.00 0.00 3.16
5362 6705 3.519579 TCGTCGTGGTTTTAGTTCAACA 58.480 40.909 0.00 0.00 0.00 3.33
5363 6706 3.553105 ACTCGTCGTGGTTTTAGTTCAAC 59.447 43.478 0.00 0.00 0.00 3.18
5364 6707 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
5365 6708 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
5366 6709 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
5367 6710 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
5368 6711 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
5369 6712 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
5370 6713 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
5371 6714 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
5372 6715 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
5373 6716 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
5374 6717 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
5375 6718 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
5376 6719 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
5377 6720 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
5378 6721 2.598589 TCCGTTCCAAATTACTCGTCG 58.401 47.619 0.00 0.00 0.00 5.12
5379 6722 3.308866 CCATCCGTTCCAAATTACTCGTC 59.691 47.826 0.00 0.00 0.00 4.20
5380 6723 3.055675 TCCATCCGTTCCAAATTACTCGT 60.056 43.478 0.00 0.00 0.00 4.18
5381 6724 3.527533 TCCATCCGTTCCAAATTACTCG 58.472 45.455 0.00 0.00 0.00 4.18
5382 6725 4.514401 ACTCCATCCGTTCCAAATTACTC 58.486 43.478 0.00 0.00 0.00 2.59
5383 6726 4.569719 ACTCCATCCGTTCCAAATTACT 57.430 40.909 0.00 0.00 0.00 2.24
5384 6727 6.937436 AATACTCCATCCGTTCCAAATTAC 57.063 37.500 0.00 0.00 0.00 1.89
5385 6728 7.612244 TCAAAATACTCCATCCGTTCCAAATTA 59.388 33.333 0.00 0.00 0.00 1.40
5386 6729 6.435904 TCAAAATACTCCATCCGTTCCAAATT 59.564 34.615 0.00 0.00 0.00 1.82
5387 6730 5.949354 TCAAAATACTCCATCCGTTCCAAAT 59.051 36.000 0.00 0.00 0.00 2.32
5388 6731 5.317808 TCAAAATACTCCATCCGTTCCAAA 58.682 37.500 0.00 0.00 0.00 3.28
5389 6732 4.912586 TCAAAATACTCCATCCGTTCCAA 58.087 39.130 0.00 0.00 0.00 3.53
5390 6733 4.561500 TCAAAATACTCCATCCGTTCCA 57.438 40.909 0.00 0.00 0.00 3.53
5391 6734 4.201920 GCTTCAAAATACTCCATCCGTTCC 60.202 45.833 0.00 0.00 0.00 3.62
5392 6735 4.494199 CGCTTCAAAATACTCCATCCGTTC 60.494 45.833 0.00 0.00 0.00 3.95
5393 6736 3.374058 CGCTTCAAAATACTCCATCCGTT 59.626 43.478 0.00 0.00 0.00 4.44
5394 6737 2.936498 CGCTTCAAAATACTCCATCCGT 59.064 45.455 0.00 0.00 0.00 4.69
5395 6738 3.001330 GTCGCTTCAAAATACTCCATCCG 59.999 47.826 0.00 0.00 0.00 4.18
5396 6739 3.001330 CGTCGCTTCAAAATACTCCATCC 59.999 47.826 0.00 0.00 0.00 3.51
5397 6740 3.001330 CCGTCGCTTCAAAATACTCCATC 59.999 47.826 0.00 0.00 0.00 3.51
5398 6741 2.936498 CCGTCGCTTCAAAATACTCCAT 59.064 45.455 0.00 0.00 0.00 3.41
5399 6742 2.343101 CCGTCGCTTCAAAATACTCCA 58.657 47.619 0.00 0.00 0.00 3.86
5400 6743 1.062148 GCCGTCGCTTCAAAATACTCC 59.938 52.381 0.00 0.00 0.00 3.85
5401 6744 1.730064 TGCCGTCGCTTCAAAATACTC 59.270 47.619 0.00 0.00 35.36 2.59
5402 6745 1.803334 TGCCGTCGCTTCAAAATACT 58.197 45.000 0.00 0.00 35.36 2.12
5403 6746 2.825086 ATGCCGTCGCTTCAAAATAC 57.175 45.000 0.00 0.00 35.36 1.89
5419 6762 0.107017 TTCTGGGCTGCCTCTAATGC 60.107 55.000 19.68 0.00 0.00 3.56
5438 6781 9.923143 CATTTATAGTTTGATCAATGATGGCAT 57.077 29.630 9.40 0.00 35.92 4.40
5498 6847 1.074566 AGGAAGAAAAGACCCCTGCTG 59.925 52.381 0.00 0.00 0.00 4.41
5501 6850 2.026729 GGAGAGGAAGAAAAGACCCCTG 60.027 54.545 0.00 0.00 0.00 4.45
5507 6856 3.511934 CGAGGAAGGAGAGGAAGAAAAGA 59.488 47.826 0.00 0.00 0.00 2.52
5508 6857 3.855858 CGAGGAAGGAGAGGAAGAAAAG 58.144 50.000 0.00 0.00 0.00 2.27
5512 6861 0.684805 GGCGAGGAAGGAGAGGAAGA 60.685 60.000 0.00 0.00 0.00 2.87
5513 6862 1.819905 GGCGAGGAAGGAGAGGAAG 59.180 63.158 0.00 0.00 0.00 3.46
5515 6864 2.440430 CGGCGAGGAAGGAGAGGA 60.440 66.667 0.00 0.00 0.00 3.71
5516 6865 4.214327 GCGGCGAGGAAGGAGAGG 62.214 72.222 12.98 0.00 0.00 3.69
5533 6882 1.889530 AAGGAAGAAGGCGACCGGAG 61.890 60.000 9.46 2.13 0.00 4.63
5552 6901 4.273257 TCGCGCGTGAGGTTGTCA 62.273 61.111 30.98 2.41 0.00 3.58
5553 6902 3.470567 CTCGCGCGTGAGGTTGTC 61.471 66.667 35.90 3.04 32.18 3.18
5589 6938 2.096496 CCCGAGCTTGTATTTGAGCAAG 59.904 50.000 0.00 0.00 43.42 4.01
5595 6944 0.099436 GCTGCCCGAGCTTGTATTTG 59.901 55.000 0.00 0.00 45.21 2.32
5596 6945 2.482326 GCTGCCCGAGCTTGTATTT 58.518 52.632 0.00 0.00 45.21 1.40
5608 6957 1.117150 ATTGTCATTCATGGCTGCCC 58.883 50.000 17.53 0.00 32.56 5.36
5614 6963 1.535226 CGCTGCCATTGTCATTCATGG 60.535 52.381 0.00 0.00 37.25 3.66
5623 6972 1.744368 CTGAGCTCGCTGCCATTGT 60.744 57.895 9.64 0.00 44.23 2.71
5625 6974 2.124819 CCTGAGCTCGCTGCCATT 60.125 61.111 9.64 0.00 44.23 3.16
5626 6975 4.853050 GCCTGAGCTCGCTGCCAT 62.853 66.667 9.64 0.00 44.23 4.40
5671 7027 3.097728 GTGCGTGTGAGTCCGACG 61.098 66.667 6.66 6.66 36.18 5.12
5673 7029 4.994201 GCGTGCGTGTGAGTCCGA 62.994 66.667 0.00 0.00 0.00 4.55
5699 7055 2.601067 TGTACTTGGGACGCGGGA 60.601 61.111 12.47 0.00 0.00 5.14
5700 7056 2.433664 GTGTACTTGGGACGCGGG 60.434 66.667 12.47 0.00 0.00 6.13
5701 7057 2.433664 GGTGTACTTGGGACGCGG 60.434 66.667 12.47 0.00 0.00 6.46
5704 7060 1.736645 CGCTGGTGTACTTGGGACG 60.737 63.158 0.00 0.00 0.00 4.79
5706 7062 1.669440 GTCGCTGGTGTACTTGGGA 59.331 57.895 0.00 0.00 0.00 4.37
5780 7136 4.555709 GCGTGTGTGGGTGGGTGA 62.556 66.667 0.00 0.00 0.00 4.02
5788 7144 4.643385 GTTCGTGCGCGTGTGTGG 62.643 66.667 20.50 0.00 39.49 4.17
5854 7225 2.044123 AAGATCACGGCCTTGAATCC 57.956 50.000 16.83 8.57 0.00 3.01
5855 7226 3.691609 AGAAAAGATCACGGCCTTGAATC 59.308 43.478 16.83 13.45 0.00 2.52
5856 7227 3.690460 AGAAAAGATCACGGCCTTGAAT 58.310 40.909 16.83 5.25 0.00 2.57
5857 7228 3.140325 AGAAAAGATCACGGCCTTGAA 57.860 42.857 16.83 0.00 0.00 2.69
5858 7229 2.859165 AGAAAAGATCACGGCCTTGA 57.141 45.000 15.15 15.15 0.00 3.02
5859 7230 3.077359 AGAAGAAAAGATCACGGCCTTG 58.923 45.455 1.99 1.99 0.00 3.61
5860 7231 3.425162 AGAAGAAAAGATCACGGCCTT 57.575 42.857 0.00 0.00 0.00 4.35
5861 7232 3.077359 CAAGAAGAAAAGATCACGGCCT 58.923 45.455 0.00 0.00 0.00 5.19
5862 7233 2.814336 ACAAGAAGAAAAGATCACGGCC 59.186 45.455 0.00 0.00 0.00 6.13
5863 7234 4.489679 AACAAGAAGAAAAGATCACGGC 57.510 40.909 0.00 0.00 0.00 5.68
5864 7235 5.621228 CGAAAACAAGAAGAAAAGATCACGG 59.379 40.000 0.00 0.00 0.00 4.94
5865 7236 6.139169 CACGAAAACAAGAAGAAAAGATCACG 59.861 38.462 0.00 0.00 0.00 4.35
5866 7237 6.967199 ACACGAAAACAAGAAGAAAAGATCAC 59.033 34.615 0.00 0.00 0.00 3.06
5867 7238 7.083875 ACACGAAAACAAGAAGAAAAGATCA 57.916 32.000 0.00 0.00 0.00 2.92
5868 7239 8.548721 TCTACACGAAAACAAGAAGAAAAGATC 58.451 33.333 0.00 0.00 0.00 2.75
5869 7240 8.336080 GTCTACACGAAAACAAGAAGAAAAGAT 58.664 33.333 0.00 0.00 0.00 2.40
5870 7241 7.201582 GGTCTACACGAAAACAAGAAGAAAAGA 60.202 37.037 0.00 0.00 0.00 2.52
5871 7242 6.905609 GGTCTACACGAAAACAAGAAGAAAAG 59.094 38.462 0.00 0.00 0.00 2.27
5872 7243 6.596497 AGGTCTACACGAAAACAAGAAGAAAA 59.404 34.615 0.00 0.00 0.00 2.29
5873 7244 6.036735 CAGGTCTACACGAAAACAAGAAGAAA 59.963 38.462 0.00 0.00 0.00 2.52
5874 7245 5.522460 CAGGTCTACACGAAAACAAGAAGAA 59.478 40.000 0.00 0.00 0.00 2.52
5875 7246 5.047847 CAGGTCTACACGAAAACAAGAAGA 58.952 41.667 0.00 0.00 0.00 2.87
5876 7247 4.318831 GCAGGTCTACACGAAAACAAGAAG 60.319 45.833 0.00 0.00 0.00 2.85
5920 7291 3.854459 GACAAGTAGCAGCGCGGC 61.854 66.667 25.52 25.52 0.00 6.53
5938 7309 3.252665 TTGGATGCGTGTGCTTGCG 62.253 57.895 0.00 0.00 43.34 4.85
5949 7320 1.729149 GCAACTAACTGCGTTGGATGC 60.729 52.381 17.72 17.72 42.70 3.91
5958 7329 2.409948 AGGATGGAGCAACTAACTGC 57.590 50.000 0.00 0.00 42.97 4.40
5964 7335 2.250924 CCCAAAAAGGATGGAGCAACT 58.749 47.619 0.00 0.00 40.56 3.16
5967 7338 2.397044 AACCCAAAAAGGATGGAGCA 57.603 45.000 0.00 0.00 40.56 4.26
5968 7339 5.420725 AATAAACCCAAAAAGGATGGAGC 57.579 39.130 0.00 0.00 40.56 4.70
5969 7340 6.149308 GCAAAATAAACCCAAAAAGGATGGAG 59.851 38.462 0.00 0.00 40.56 3.86
5971 7342 5.182950 GGCAAAATAAACCCAAAAAGGATGG 59.817 40.000 0.00 0.00 41.22 3.51
5972 7343 6.003326 AGGCAAAATAAACCCAAAAAGGATG 58.997 36.000 0.00 0.00 41.22 3.51
5998 7400 5.393352 CCACATGTCATAGGGTGAACAATTG 60.393 44.000 3.24 3.24 38.90 2.32
6000 7402 4.272489 CCACATGTCATAGGGTGAACAAT 58.728 43.478 0.00 0.00 38.90 2.71
6008 7411 0.474184 GGGACCCACATGTCATAGGG 59.526 60.000 15.72 15.72 46.96 3.53
6024 7427 1.335132 GGTCAATAGGAGGCGTGGGA 61.335 60.000 0.00 0.00 0.00 4.37
6026 7429 1.227263 CGGTCAATAGGAGGCGTGG 60.227 63.158 0.00 0.00 0.00 4.94
6029 7432 1.067582 GACCGGTCAATAGGAGGCG 59.932 63.158 29.75 0.00 0.00 5.52
6039 7442 3.912496 ATCAGATCATTTGACCGGTCA 57.088 42.857 33.23 33.23 37.91 4.02
6074 7477 3.822192 GATTTGAACCCGCGCCCC 61.822 66.667 0.00 0.00 0.00 5.80
6075 7478 3.822192 GGATTTGAACCCGCGCCC 61.822 66.667 0.00 0.00 0.00 6.13
6095 7498 9.190317 ACAATTAAAGCCAAAAATAAACCCAAA 57.810 25.926 0.00 0.00 0.00 3.28
6100 7503 9.658475 GGTGAACAATTAAAGCCAAAAATAAAC 57.342 29.630 0.00 0.00 0.00 2.01
6103 7506 7.740805 AGGGTGAACAATTAAAGCCAAAAATA 58.259 30.769 0.00 0.00 32.52 1.40
6104 7507 6.600388 AGGGTGAACAATTAAAGCCAAAAAT 58.400 32.000 0.00 0.00 32.52 1.82
6108 7511 6.013379 TCATAGGGTGAACAATTAAAGCCAA 58.987 36.000 0.00 0.00 32.78 4.52
6109 7512 5.417580 GTCATAGGGTGAACAATTAAAGCCA 59.582 40.000 0.00 0.00 38.90 4.75
6110 7513 5.417580 TGTCATAGGGTGAACAATTAAAGCC 59.582 40.000 0.00 0.00 38.90 4.35
6111 7514 6.509418 TGTCATAGGGTGAACAATTAAAGC 57.491 37.500 0.00 0.00 38.90 3.51
6114 7517 7.723616 CCCATATGTCATAGGGTGAACAATTAA 59.276 37.037 19.55 0.00 38.90 1.40
6115 7518 7.230747 CCCATATGTCATAGGGTGAACAATTA 58.769 38.462 19.55 0.00 38.90 1.40
6116 7519 6.070656 CCCATATGTCATAGGGTGAACAATT 58.929 40.000 19.55 0.00 38.90 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.