Multiple sequence alignment - TraesCS5A01G380300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G380300 chr5A 100.000 5261 0 0 1 5261 577931248 577936508 0.000000e+00 9716.0
1 TraesCS5A01G380300 chr5A 83.002 553 81 12 3425 3973 577901734 577902277 6.120000e-134 488.0
2 TraesCS5A01G380300 chr5A 85.062 241 27 3 998 1235 577887173 577887407 2.450000e-58 237.0
3 TraesCS5A01G380300 chr5A 78.146 302 53 11 2799 3095 577889757 577890050 4.190000e-41 180.0
4 TraesCS5A01G380300 chr5B 91.791 3228 163 41 896 4073 562952149 562955324 0.000000e+00 4399.0
5 TraesCS5A01G380300 chr5B 93.508 801 25 5 2 793 562794236 562795018 0.000000e+00 1166.0
6 TraesCS5A01G380300 chr5B 84.425 687 69 21 4090 4750 562955527 562956201 4.440000e-180 641.0
7 TraesCS5A01G380300 chr5B 86.081 467 61 4 3508 3973 562492188 562492651 2.830000e-137 499.0
8 TraesCS5A01G380300 chr5B 86.500 200 21 1 1036 1235 562488627 562488820 1.150000e-51 215.0
9 TraesCS5A01G380300 chr5B 79.470 302 50 9 2799 3094 562490547 562490842 2.480000e-48 204.0
10 TraesCS5A01G380300 chr5B 85.714 98 10 4 5097 5192 562956294 562956389 3.350000e-17 100.0
11 TraesCS5A01G380300 chr5D 93.349 1699 65 15 896 2564 458897434 458899114 0.000000e+00 2468.0
12 TraesCS5A01G380300 chr5D 94.576 1475 70 8 2602 4073 458899114 458900581 0.000000e+00 2272.0
13 TraesCS5A01G380300 chr5D 94.073 1181 42 7 4090 5260 458900738 458901900 0.000000e+00 1768.0
14 TraesCS5A01G380300 chr5D 96.010 802 16 5 2 794 458870385 458871179 0.000000e+00 1290.0
15 TraesCS5A01G380300 chr5D 91.975 785 29 10 2 778 458874331 458875089 0.000000e+00 1070.0
16 TraesCS5A01G380300 chr5D 90.577 520 35 6 978 1494 458866887 458867395 0.000000e+00 676.0
17 TraesCS5A01G380300 chr5D 86.222 225 20 3 1036 1260 458818170 458818383 3.170000e-57 233.0
18 TraesCS5A01G380300 chr5D 85.542 166 24 0 1628 1793 458818472 458818637 1.950000e-39 174.0
19 TraesCS5A01G380300 chr5D 76.490 302 55 14 2799 3093 458838013 458838305 3.280000e-32 150.0
20 TraesCS5A01G380300 chr5D 80.882 204 25 8 569 767 492611916 492612110 1.180000e-31 148.0
21 TraesCS5A01G380300 chr3B 94.958 1428 63 8 2637 4061 23705105 23706526 0.000000e+00 2230.0
22 TraesCS5A01G380300 chr3B 91.405 989 53 8 1619 2578 23704117 23705102 0.000000e+00 1327.0
23 TraesCS5A01G380300 chr3B 91.262 412 30 4 4090 4496 23706688 23707098 1.660000e-154 556.0
24 TraesCS5A01G380300 chr3B 91.556 225 12 6 1047 1265 23703791 23704014 2.380000e-78 303.0
25 TraesCS5A01G380300 chr3B 79.096 354 32 20 4943 5261 23707114 23707460 6.910000e-49 206.0
26 TraesCS5A01G380300 chr3D 94.598 1444 67 9 2634 4073 16164942 16166378 0.000000e+00 2224.0
27 TraesCS5A01G380300 chr3D 89.189 1554 88 34 1047 2575 16163449 16164947 0.000000e+00 1866.0
28 TraesCS5A01G380300 chr3D 89.706 816 49 20 4090 4894 16166535 16167326 0.000000e+00 1009.0
29 TraesCS5A01G380300 chr3D 88.113 530 53 7 4575 5099 16161830 16162354 5.790000e-174 621.0
30 TraesCS5A01G380300 chr3D 91.617 167 12 2 5096 5261 16167982 16168147 4.100000e-56 230.0
31 TraesCS5A01G380300 chr3D 91.250 80 6 1 5101 5179 16162383 16162462 2.000000e-19 108.0
32 TraesCS5A01G380300 chr3A 95.443 812 28 8 3264 4073 20218838 20218034 0.000000e+00 1286.0
33 TraesCS5A01G380300 chr3A 91.499 894 64 9 2481 3368 20231564 20230677 0.000000e+00 1219.0
34 TraesCS5A01G380300 chr3A 91.687 806 57 6 4096 4894 20217708 20216906 0.000000e+00 1109.0
35 TraesCS5A01G380300 chr3A 92.403 724 41 3 3363 4076 20229781 20229062 0.000000e+00 1020.0
36 TraesCS5A01G380300 chr3A 88.417 872 64 19 1047 1913 20226879 20226040 0.000000e+00 1016.0
37 TraesCS5A01G380300 chr3A 96.041 581 22 1 1999 2578 20225992 20225412 0.000000e+00 944.0
38 TraesCS5A01G380300 chr3A 93.258 623 37 3 2639 3260 20225407 20224789 0.000000e+00 913.0
39 TraesCS5A01G380300 chr3A 86.356 623 63 11 4483 5099 20228544 20227938 0.000000e+00 660.0
40 TraesCS5A01G380300 chr3A 87.213 305 32 5 4090 4389 20228911 20228609 1.810000e-89 340.0
41 TraesCS5A01G380300 chr3A 90.341 176 11 5 5090 5261 20216302 20216129 5.300000e-55 226.0
42 TraesCS5A01G380300 chr7A 82.424 165 21 1 175 331 130378182 130378346 2.560000e-28 137.0
43 TraesCS5A01G380300 chr7A 81.714 175 17 8 169 331 732094348 732094519 1.190000e-26 132.0
44 TraesCS5A01G380300 chr1D 83.333 156 19 6 182 331 338694005 338694159 2.560000e-28 137.0
45 TraesCS5A01G380300 chr6A 82.581 155 15 5 187 331 603917731 603917579 5.530000e-25 126.0
46 TraesCS5A01G380300 chr1A 82.581 155 15 5 187 331 539849312 539849464 5.530000e-25 126.0
47 TraesCS5A01G380300 chr1A 81.818 154 16 5 188 331 470997494 470997343 9.260000e-23 119.0
48 TraesCS5A01G380300 chr6D 83.077 130 18 4 187 315 27459805 27459931 1.200000e-21 115.0
49 TraesCS5A01G380300 chr2A 80.745 161 19 4 167 315 715765256 715765096 1.200000e-21 115.0
50 TraesCS5A01G380300 chr7D 79.333 150 22 6 189 331 351766190 351766337 4.340000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G380300 chr5A 577931248 577936508 5260 False 9716.000000 9716 100.000000 1 5261 1 chr5A.!!$F2 5260
1 TraesCS5A01G380300 chr5A 577901734 577902277 543 False 488.000000 488 83.002000 3425 3973 1 chr5A.!!$F1 548
2 TraesCS5A01G380300 chr5A 577887173 577890050 2877 False 208.500000 237 81.604000 998 3095 2 chr5A.!!$F3 2097
3 TraesCS5A01G380300 chr5B 562952149 562956389 4240 False 1713.333333 4399 87.310000 896 5192 3 chr5B.!!$F3 4296
4 TraesCS5A01G380300 chr5B 562794236 562795018 782 False 1166.000000 1166 93.508000 2 793 1 chr5B.!!$F1 791
5 TraesCS5A01G380300 chr5B 562488627 562492651 4024 False 306.000000 499 84.017000 1036 3973 3 chr5B.!!$F2 2937
6 TraesCS5A01G380300 chr5D 458897434 458901900 4466 False 2169.333333 2468 93.999333 896 5260 3 chr5D.!!$F5 4364
7 TraesCS5A01G380300 chr5D 458866887 458875089 8202 False 1012.000000 1290 92.854000 2 1494 3 chr5D.!!$F4 1492
8 TraesCS5A01G380300 chr3B 23703791 23707460 3669 False 924.400000 2230 89.655400 1047 5261 5 chr3B.!!$F1 4214
9 TraesCS5A01G380300 chr3D 16161830 16168147 6317 False 1009.666667 2224 90.745500 1047 5261 6 chr3D.!!$F1 4214
10 TraesCS5A01G380300 chr3A 20216129 20218838 2709 True 873.666667 1286 92.490333 3264 5261 3 chr3A.!!$R1 1997
11 TraesCS5A01G380300 chr3A 20224789 20231564 6775 True 873.142857 1219 90.741000 1047 5099 7 chr3A.!!$R2 4052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 882 0.100861 GTCGCTCCCGGAAGTAAGAG 59.899 60.0 0.73 0.0 34.56 2.85 F
894 895 0.450983 GTAAGAGACCAGACCGGACG 59.549 60.0 9.46 0.0 38.63 4.79 F
1699 5459 0.874390 TTGTCGCATGAGAAGCCAAC 59.126 50.0 0.00 0.0 0.00 3.77 F
2382 7520 1.318576 GGGCCCATTATACTGCACAC 58.681 55.0 19.95 0.0 0.00 3.82 F
2391 7529 2.185004 ATACTGCACACGGAAGCTTT 57.815 45.0 0.00 0.0 0.00 3.51 F
4076 16692 0.032912 ATCATGATGCACCTGCCCAA 60.033 50.0 7.59 0.0 41.18 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 5459 0.534412 AGCTTCATCACAGTCCTCGG 59.466 55.000 0.00 0.00 0.00 4.63 R
2356 7494 3.815396 GCAGTATAATGGGCCCATGACAT 60.815 47.826 38.06 29.19 36.68 3.06 R
3515 12181 0.937304 GCACTTCGCAACTTCAGTCA 59.063 50.000 0.00 0.00 41.79 3.41 R
3777 16383 1.032014 CACCAAGAATTATGGCCCCG 58.968 55.000 0.00 0.00 41.89 5.73 R
4086 17052 1.064505 CATCGCACAGCACAATTAGGG 59.935 52.381 0.00 0.00 0.00 3.53 R
4939 18352 1.360393 ACCTTGTTGGCCCCTCTTCA 61.360 55.000 0.00 0.00 40.22 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.694784 TCAGAAACAAACAAAATAGTGACGTTC 59.305 33.333 0.00 0.00 0.00 3.95
94 95 7.068716 ACAAGGAAACAGTTTAAGAGCAATTCT 59.931 33.333 0.00 0.00 37.93 2.40
189 190 8.067751 ACGGCATCAGTATATATTGATACAGT 57.932 34.615 17.52 15.82 35.16 3.55
190 191 8.531982 ACGGCATCAGTATATATTGATACAGTT 58.468 33.333 17.52 4.90 35.16 3.16
232 233 4.672587 GTGCCATCACATCTAAGTCCTA 57.327 45.455 0.00 0.00 42.66 2.94
234 235 4.993584 GTGCCATCACATCTAAGTCCTATG 59.006 45.833 0.00 0.00 42.66 2.23
235 236 4.040829 TGCCATCACATCTAAGTCCTATGG 59.959 45.833 0.00 0.00 36.53 2.74
236 237 4.573900 CCATCACATCTAAGTCCTATGGC 58.426 47.826 0.00 0.00 0.00 4.40
237 238 4.040829 CCATCACATCTAAGTCCTATGGCA 59.959 45.833 0.00 0.00 0.00 4.92
239 240 5.894298 TCACATCTAAGTCCTATGGCATT 57.106 39.130 4.78 0.00 0.00 3.56
240 241 5.614308 TCACATCTAAGTCCTATGGCATTG 58.386 41.667 4.78 3.02 0.00 2.82
241 242 5.366477 TCACATCTAAGTCCTATGGCATTGA 59.634 40.000 4.78 0.00 0.00 2.57
242 243 6.043590 TCACATCTAAGTCCTATGGCATTGAT 59.956 38.462 4.78 0.00 0.00 2.57
244 245 6.271857 ACATCTAAGTCCTATGGCATTGATCT 59.728 38.462 4.78 2.81 0.00 2.75
245 246 6.753913 TCTAAGTCCTATGGCATTGATCTT 57.246 37.500 4.78 13.11 0.00 2.40
246 247 7.855784 TCTAAGTCCTATGGCATTGATCTTA 57.144 36.000 4.78 13.49 0.00 2.10
247 248 7.671302 TCTAAGTCCTATGGCATTGATCTTAC 58.329 38.462 4.78 0.00 0.00 2.34
248 249 5.894298 AGTCCTATGGCATTGATCTTACA 57.106 39.130 4.78 0.00 0.00 2.41
249 250 6.445451 AGTCCTATGGCATTGATCTTACAT 57.555 37.500 4.78 0.00 0.00 2.29
250 251 6.236409 AGTCCTATGGCATTGATCTTACATG 58.764 40.000 4.78 0.00 0.00 3.21
251 252 5.413833 GTCCTATGGCATTGATCTTACATGG 59.586 44.000 4.78 0.00 0.00 3.66
252 253 5.310331 TCCTATGGCATTGATCTTACATGGA 59.690 40.000 4.78 0.00 0.00 3.41
253 254 5.646793 CCTATGGCATTGATCTTACATGGAG 59.353 44.000 4.78 0.00 0.00 3.86
254 255 4.776435 TGGCATTGATCTTACATGGAGA 57.224 40.909 0.00 0.04 0.00 3.71
257 258 5.766670 TGGCATTGATCTTACATGGAGATTC 59.233 40.000 13.17 8.56 34.13 2.52
258 259 5.106791 GGCATTGATCTTACATGGAGATTCG 60.107 44.000 13.17 5.94 34.13 3.34
259 260 5.468072 GCATTGATCTTACATGGAGATTCGT 59.532 40.000 13.17 2.96 34.13 3.85
260 261 6.565435 GCATTGATCTTACATGGAGATTCGTG 60.565 42.308 13.17 12.34 34.13 4.35
262 263 5.351458 TGATCTTACATGGAGATTCGTGTG 58.649 41.667 13.17 0.00 37.44 3.82
263 264 5.127031 TGATCTTACATGGAGATTCGTGTGA 59.873 40.000 13.17 0.00 37.44 3.58
264 265 4.998788 TCTTACATGGAGATTCGTGTGAG 58.001 43.478 0.00 0.00 39.87 3.51
265 266 2.015736 ACATGGAGATTCGTGTGAGC 57.984 50.000 0.00 0.00 35.75 4.26
266 267 1.276138 ACATGGAGATTCGTGTGAGCA 59.724 47.619 0.00 0.00 35.75 4.26
267 268 2.093288 ACATGGAGATTCGTGTGAGCAT 60.093 45.455 0.00 0.00 35.75 3.79
268 269 2.768253 TGGAGATTCGTGTGAGCATT 57.232 45.000 0.00 0.00 0.00 3.56
269 270 3.057969 TGGAGATTCGTGTGAGCATTT 57.942 42.857 0.00 0.00 0.00 2.32
270 271 3.411446 TGGAGATTCGTGTGAGCATTTT 58.589 40.909 0.00 0.00 0.00 1.82
271 272 3.436704 TGGAGATTCGTGTGAGCATTTTC 59.563 43.478 0.00 0.00 0.00 2.29
272 273 3.686726 GGAGATTCGTGTGAGCATTTTCT 59.313 43.478 0.00 0.00 0.00 2.52
274 275 5.039480 AGATTCGTGTGAGCATTTTCTTG 57.961 39.130 0.00 0.00 0.00 3.02
275 276 4.756642 AGATTCGTGTGAGCATTTTCTTGA 59.243 37.500 0.00 0.00 0.00 3.02
276 277 5.413833 AGATTCGTGTGAGCATTTTCTTGAT 59.586 36.000 0.00 0.00 0.00 2.57
278 279 5.034554 TCGTGTGAGCATTTTCTTGATTC 57.965 39.130 0.00 0.00 0.00 2.52
280 281 4.849926 CGTGTGAGCATTTTCTTGATTCTG 59.150 41.667 0.00 0.00 0.00 3.02
282 283 6.211515 GTGTGAGCATTTTCTTGATTCTGTT 58.788 36.000 0.00 0.00 0.00 3.16
283 284 6.698766 GTGTGAGCATTTTCTTGATTCTGTTT 59.301 34.615 0.00 0.00 0.00 2.83
286 287 7.650903 GTGAGCATTTTCTTGATTCTGTTTCTT 59.349 33.333 0.00 0.00 0.00 2.52
288 289 8.953368 AGCATTTTCTTGATTCTGTTTCTTTT 57.047 26.923 0.00 0.00 0.00 2.27
290 291 9.642312 GCATTTTCTTGATTCTGTTTCTTTTTC 57.358 29.630 0.00 0.00 0.00 2.29
293 294 9.927668 TTTTCTTGATTCTGTTTCTTTTTCTGT 57.072 25.926 0.00 0.00 0.00 3.41
302 303 9.897744 TTCTGTTTCTTTTTCTGTATATGCTTG 57.102 29.630 0.00 0.00 0.00 4.01
303 304 9.283768 TCTGTTTCTTTTTCTGTATATGCTTGA 57.716 29.630 0.00 0.00 0.00 3.02
313 314 8.969260 TTCTGTATATGCTTGATTGAATCACT 57.031 30.769 7.48 0.00 39.39 3.41
315 316 8.833493 TCTGTATATGCTTGATTGAATCACTTG 58.167 33.333 7.48 2.84 39.39 3.16
318 319 3.499338 TGCTTGATTGAATCACTTGGGT 58.501 40.909 7.48 0.00 39.39 4.51
319 320 3.256383 TGCTTGATTGAATCACTTGGGTG 59.744 43.478 7.48 0.00 44.23 4.61
320 321 3.256631 GCTTGATTGAATCACTTGGGTGT 59.743 43.478 7.48 0.00 43.41 4.16
321 322 4.458989 GCTTGATTGAATCACTTGGGTGTA 59.541 41.667 7.48 0.00 43.41 2.90
322 323 5.619981 GCTTGATTGAATCACTTGGGTGTAC 60.620 44.000 7.48 0.00 43.41 2.90
324 325 5.003160 TGATTGAATCACTTGGGTGTACAG 58.997 41.667 3.29 0.00 43.41 2.74
325 326 4.431416 TTGAATCACTTGGGTGTACAGT 57.569 40.909 0.00 0.00 43.41 3.55
328 329 5.302360 TGAATCACTTGGGTGTACAGTAAC 58.698 41.667 0.00 0.00 43.41 2.50
329 330 5.071250 TGAATCACTTGGGTGTACAGTAACT 59.929 40.000 0.00 0.00 43.41 2.24
330 331 6.268158 TGAATCACTTGGGTGTACAGTAACTA 59.732 38.462 0.00 0.00 43.41 2.24
331 332 6.675413 ATCACTTGGGTGTACAGTAACTAA 57.325 37.500 0.00 0.00 43.41 2.24
332 333 6.675413 TCACTTGGGTGTACAGTAACTAAT 57.325 37.500 0.00 0.00 43.41 1.73
334 335 8.192743 TCACTTGGGTGTACAGTAACTAATAA 57.807 34.615 0.00 0.00 43.41 1.40
335 336 8.090214 TCACTTGGGTGTACAGTAACTAATAAC 58.910 37.037 0.00 0.00 43.41 1.89
337 338 9.312904 ACTTGGGTGTACAGTAACTAATAACTA 57.687 33.333 0.00 0.00 0.00 2.24
340 341 8.752187 TGGGTGTACAGTAACTAATAACTAAGG 58.248 37.037 0.00 0.00 0.00 2.69
341 342 7.708322 GGGTGTACAGTAACTAATAACTAAGGC 59.292 40.741 0.00 0.00 0.00 4.35
342 343 8.253113 GGTGTACAGTAACTAATAACTAAGGCA 58.747 37.037 0.00 0.00 0.00 4.75
343 344 9.080915 GTGTACAGTAACTAATAACTAAGGCAC 57.919 37.037 0.00 0.00 0.00 5.01
345 346 9.813446 GTACAGTAACTAATAACTAAGGCACAT 57.187 33.333 0.00 0.00 0.00 3.21
346 347 8.943909 ACAGTAACTAATAACTAAGGCACATC 57.056 34.615 0.00 0.00 0.00 3.06
347 348 8.759782 ACAGTAACTAATAACTAAGGCACATCT 58.240 33.333 0.00 0.00 0.00 2.90
352 353 9.988815 AACTAATAACTAAGGCACATCTAGATG 57.011 33.333 27.63 27.63 44.15 2.90
366 367 6.403333 CATCTAGATGTACTCGCTCTAGAC 57.597 45.833 22.42 0.00 46.13 2.59
368 369 5.534407 TCTAGATGTACTCGCTCTAGACAG 58.466 45.833 15.13 0.00 41.43 3.51
369 370 2.875933 AGATGTACTCGCTCTAGACAGC 59.124 50.000 0.00 0.00 35.90 4.40
370 371 2.109425 TGTACTCGCTCTAGACAGCA 57.891 50.000 4.99 0.00 39.62 4.41
371 372 2.644676 TGTACTCGCTCTAGACAGCAT 58.355 47.619 4.99 0.00 39.62 3.79
372 373 3.805207 TGTACTCGCTCTAGACAGCATA 58.195 45.455 4.99 0.00 39.62 3.14
373 374 4.390264 TGTACTCGCTCTAGACAGCATAT 58.610 43.478 4.99 0.00 39.62 1.78
374 375 4.822350 TGTACTCGCTCTAGACAGCATATT 59.178 41.667 4.99 0.00 39.62 1.28
375 376 4.235939 ACTCGCTCTAGACAGCATATTG 57.764 45.455 4.99 0.00 39.62 1.90
378 379 4.142038 TCGCTCTAGACAGCATATTGGTA 58.858 43.478 4.99 0.00 39.62 3.25
381 382 6.603599 TCGCTCTAGACAGCATATTGGTATAT 59.396 38.462 4.99 0.00 39.62 0.86
382 383 7.122799 TCGCTCTAGACAGCATATTGGTATATT 59.877 37.037 4.99 0.00 39.62 1.28
383 384 7.433719 CGCTCTAGACAGCATATTGGTATATTC 59.566 40.741 4.99 0.00 39.62 1.75
384 385 7.433719 GCTCTAGACAGCATATTGGTATATTCG 59.566 40.741 0.00 0.00 39.43 3.34
386 387 5.178797 AGACAGCATATTGGTATATTCGGC 58.821 41.667 0.00 0.00 0.00 5.54
387 388 4.905429 ACAGCATATTGGTATATTCGGCA 58.095 39.130 0.00 0.00 0.00 5.69
389 390 5.181245 ACAGCATATTGGTATATTCGGCAAC 59.819 40.000 0.00 0.00 0.00 4.17
390 391 5.181056 CAGCATATTGGTATATTCGGCAACA 59.819 40.000 0.00 0.00 0.00 3.33
391 392 5.181245 AGCATATTGGTATATTCGGCAACAC 59.819 40.000 0.00 0.00 0.00 3.32
392 393 5.049060 GCATATTGGTATATTCGGCAACACA 60.049 40.000 0.00 0.00 0.00 3.72
395 396 3.210227 TGGTATATTCGGCAACACATGG 58.790 45.455 0.00 0.00 0.00 3.66
397 398 3.498397 GGTATATTCGGCAACACATGGAG 59.502 47.826 0.00 0.00 0.00 3.86
399 400 1.647545 ATTCGGCAACACATGGAGCG 61.648 55.000 0.00 0.00 0.00 5.03
400 401 2.723586 TTCGGCAACACATGGAGCGA 62.724 55.000 0.00 0.00 0.00 4.93
401 402 2.108514 CGGCAACACATGGAGCGAT 61.109 57.895 0.00 0.00 0.00 4.58
402 403 1.723870 GGCAACACATGGAGCGATC 59.276 57.895 0.00 0.00 0.00 3.69
403 404 1.718757 GGCAACACATGGAGCGATCC 61.719 60.000 14.17 14.17 0.00 3.36
404 405 1.026182 GCAACACATGGAGCGATCCA 61.026 55.000 26.87 26.87 44.85 3.41
407 408 0.904649 ACACATGGAGCGATCCAGAA 59.095 50.000 28.29 4.33 43.86 3.02
409 410 2.290260 ACACATGGAGCGATCCAGAAAA 60.290 45.455 28.29 3.46 43.86 2.29
411 412 4.129380 CACATGGAGCGATCCAGAAAATA 58.871 43.478 28.29 1.75 43.86 1.40
412 413 4.024556 CACATGGAGCGATCCAGAAAATAC 60.025 45.833 28.29 0.00 43.86 1.89
414 415 3.797039 TGGAGCGATCCAGAAAATACAG 58.203 45.455 20.59 0.00 34.33 2.74
415 416 3.450817 TGGAGCGATCCAGAAAATACAGA 59.549 43.478 20.59 0.00 34.33 3.41
416 417 4.054671 GGAGCGATCCAGAAAATACAGAG 58.945 47.826 16.44 0.00 0.00 3.35
417 418 4.202161 GGAGCGATCCAGAAAATACAGAGA 60.202 45.833 16.44 0.00 0.00 3.10
420 421 6.352516 AGCGATCCAGAAAATACAGAGATTT 58.647 36.000 0.00 0.00 0.00 2.17
421 422 6.825721 AGCGATCCAGAAAATACAGAGATTTT 59.174 34.615 0.00 0.00 40.81 1.82
444 445 5.880164 TTCTTGGAAAACTAAAAAGGGGG 57.120 39.130 0.00 0.00 0.00 5.40
459 460 3.758931 GGGGATTTGCGTGGCCAC 61.759 66.667 26.78 26.78 0.00 5.01
460 461 3.758931 GGGATTTGCGTGGCCACC 61.759 66.667 29.95 21.83 0.00 4.61
461 462 2.988684 GGATTTGCGTGGCCACCA 60.989 61.111 29.95 24.10 0.00 4.17
462 463 2.568090 GATTTGCGTGGCCACCAG 59.432 61.111 29.95 17.96 32.34 4.00
463 464 2.203480 ATTTGCGTGGCCACCAGT 60.203 55.556 29.95 16.67 32.34 4.00
464 465 1.805428 GATTTGCGTGGCCACCAGTT 61.805 55.000 29.95 17.62 32.34 3.16
465 466 1.398958 ATTTGCGTGGCCACCAGTTT 61.399 50.000 29.95 9.81 32.34 2.66
467 468 0.752009 TTGCGTGGCCACCAGTTTAA 60.752 50.000 29.95 12.73 32.34 1.52
468 469 0.538516 TGCGTGGCCACCAGTTTAAT 60.539 50.000 29.95 0.00 32.34 1.40
470 471 1.668628 GCGTGGCCACCAGTTTAATTG 60.669 52.381 29.95 12.68 32.34 2.32
472 473 1.618343 GTGGCCACCAGTTTAATTGCT 59.382 47.619 26.31 0.00 32.34 3.91
473 474 1.617850 TGGCCACCAGTTTAATTGCTG 59.382 47.619 0.00 0.00 0.00 4.41
481 482 4.749245 CAGTTTAATTGCTGGACGAGTT 57.251 40.909 0.00 0.00 0.00 3.01
482 483 5.108385 CAGTTTAATTGCTGGACGAGTTT 57.892 39.130 0.00 0.00 0.00 2.66
483 484 4.911610 CAGTTTAATTGCTGGACGAGTTTG 59.088 41.667 0.00 0.00 0.00 2.93
484 485 4.819630 AGTTTAATTGCTGGACGAGTTTGA 59.180 37.500 0.00 0.00 0.00 2.69
486 487 3.626028 AATTGCTGGACGAGTTTGAAC 57.374 42.857 0.00 0.00 0.00 3.18
487 488 2.031258 TTGCTGGACGAGTTTGAACA 57.969 45.000 0.00 0.00 0.00 3.18
490 491 3.734463 TGCTGGACGAGTTTGAACATTA 58.266 40.909 0.00 0.00 0.00 1.90
491 492 4.130857 TGCTGGACGAGTTTGAACATTAA 58.869 39.130 0.00 0.00 0.00 1.40
494 495 5.569059 GCTGGACGAGTTTGAACATTAATTG 59.431 40.000 0.00 0.00 0.00 2.32
495 496 6.007936 TGGACGAGTTTGAACATTAATTGG 57.992 37.500 0.00 0.00 0.00 3.16
496 497 4.857037 GGACGAGTTTGAACATTAATTGGC 59.143 41.667 0.00 0.00 0.00 4.52
498 499 5.460646 ACGAGTTTGAACATTAATTGGCAG 58.539 37.500 0.00 0.00 0.00 4.85
499 500 4.324402 CGAGTTTGAACATTAATTGGCAGC 59.676 41.667 0.00 0.00 0.00 5.25
500 501 4.236935 AGTTTGAACATTAATTGGCAGCG 58.763 39.130 0.00 0.00 0.00 5.18
501 502 4.022416 AGTTTGAACATTAATTGGCAGCGA 60.022 37.500 0.00 0.00 0.00 4.93
502 503 3.763097 TGAACATTAATTGGCAGCGAG 57.237 42.857 0.00 0.00 0.00 5.03
503 504 3.342719 TGAACATTAATTGGCAGCGAGA 58.657 40.909 0.00 0.00 0.00 4.04
504 505 3.374988 TGAACATTAATTGGCAGCGAGAG 59.625 43.478 0.00 0.00 0.00 3.20
526 527 4.563061 GCAGAATTGCTTCCAAAAGATGT 58.437 39.130 0.00 0.00 46.95 3.06
527 528 4.387862 GCAGAATTGCTTCCAAAAGATGTG 59.612 41.667 0.00 0.00 46.95 3.21
528 529 5.775686 CAGAATTGCTTCCAAAAGATGTGA 58.224 37.500 0.00 0.00 34.14 3.58
530 531 6.702723 CAGAATTGCTTCCAAAAGATGTGAAA 59.297 34.615 0.00 0.00 34.14 2.69
531 532 7.386848 CAGAATTGCTTCCAAAAGATGTGAAAT 59.613 33.333 0.00 0.00 34.14 2.17
532 533 7.935210 AGAATTGCTTCCAAAAGATGTGAAATT 59.065 29.630 0.00 0.00 34.14 1.82
533 534 8.454570 AATTGCTTCCAAAAGATGTGAAATTT 57.545 26.923 0.00 0.00 34.14 1.82
535 536 9.729281 ATTGCTTCCAAAAGATGTGAAATTTAT 57.271 25.926 0.00 0.00 34.14 1.40
537 538 9.859427 TGCTTCCAAAAGATGTGAAATTTATAG 57.141 29.630 0.00 0.00 34.14 1.31
550 551 9.238368 TGTGAAATTTATAGGTAAAACAGGAGG 57.762 33.333 0.00 0.00 33.76 4.30
551 552 9.457436 GTGAAATTTATAGGTAAAACAGGAGGA 57.543 33.333 0.00 0.00 33.76 3.71
553 554 9.121658 GAAATTTATAGGTAAAACAGGAGGAGG 57.878 37.037 0.00 0.00 33.76 4.30
555 556 7.433537 TTTATAGGTAAAACAGGAGGAGGAG 57.566 40.000 0.00 0.00 0.00 3.69
559 560 3.449377 GGTAAAACAGGAGGAGGAGAGAG 59.551 52.174 0.00 0.00 0.00 3.20
561 562 2.826674 AACAGGAGGAGGAGAGAGAG 57.173 55.000 0.00 0.00 0.00 3.20
562 563 0.926293 ACAGGAGGAGGAGAGAGAGG 59.074 60.000 0.00 0.00 0.00 3.69
563 564 0.185901 CAGGAGGAGGAGAGAGAGGG 59.814 65.000 0.00 0.00 0.00 4.30
564 565 0.998945 AGGAGGAGGAGAGAGAGGGG 60.999 65.000 0.00 0.00 0.00 4.79
565 566 0.996762 GGAGGAGGAGAGAGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
566 567 1.158007 GAGGAGGAGAGAGAGGGGAT 58.842 60.000 0.00 0.00 0.00 3.85
567 568 1.503347 GAGGAGGAGAGAGAGGGGATT 59.497 57.143 0.00 0.00 0.00 3.01
568 569 1.220236 AGGAGGAGAGAGAGGGGATTG 59.780 57.143 0.00 0.00 0.00 2.67
570 571 0.267356 AGGAGAGAGAGGGGATTGGG 59.733 60.000 0.00 0.00 0.00 4.12
571 572 0.766288 GGAGAGAGAGGGGATTGGGG 60.766 65.000 0.00 0.00 0.00 4.96
572 573 0.766288 GAGAGAGAGGGGATTGGGGG 60.766 65.000 0.00 0.00 0.00 5.40
573 574 1.004891 GAGAGAGGGGATTGGGGGT 59.995 63.158 0.00 0.00 0.00 4.95
574 575 1.308216 AGAGAGGGGATTGGGGGTG 60.308 63.158 0.00 0.00 0.00 4.61
575 576 2.287194 AGAGGGGATTGGGGGTGG 60.287 66.667 0.00 0.00 0.00 4.61
597 598 4.164252 GTACACGCTTGGACGAGG 57.836 61.111 0.00 0.00 36.70 4.63
598 599 1.582968 GTACACGCTTGGACGAGGA 59.417 57.895 0.00 0.00 36.70 3.71
600 601 1.592400 TACACGCTTGGACGAGGAGG 61.592 60.000 0.00 0.00 36.70 4.30
601 602 3.382832 ACGCTTGGACGAGGAGGG 61.383 66.667 0.00 0.00 36.70 4.30
602 603 3.068691 CGCTTGGACGAGGAGGGA 61.069 66.667 0.00 0.00 34.06 4.20
604 605 2.896443 CTTGGACGAGGAGGGAGC 59.104 66.667 0.00 0.00 0.00 4.70
605 606 3.068691 TTGGACGAGGAGGGAGCG 61.069 66.667 0.00 0.00 0.00 5.03
609 610 3.358076 GACGAGGAGGGAGCGGTTG 62.358 68.421 0.00 0.00 0.00 3.77
611 612 2.266055 GAGGAGGGAGCGGTTGTG 59.734 66.667 0.00 0.00 0.00 3.33
616 617 4.778143 GGGAGCGGTTGTGGCGAT 62.778 66.667 0.00 0.00 35.00 4.58
617 618 3.499737 GGAGCGGTTGTGGCGATG 61.500 66.667 0.00 0.00 35.00 3.84
618 619 3.499737 GAGCGGTTGTGGCGATGG 61.500 66.667 0.00 0.00 35.00 3.51
619 620 3.950794 GAGCGGTTGTGGCGATGGA 62.951 63.158 0.00 0.00 35.00 3.41
620 621 3.499737 GCGGTTGTGGCGATGGAG 61.500 66.667 0.00 0.00 0.00 3.86
621 622 2.264480 CGGTTGTGGCGATGGAGA 59.736 61.111 0.00 0.00 0.00 3.71
622 623 1.153369 CGGTTGTGGCGATGGAGAT 60.153 57.895 0.00 0.00 0.00 2.75
625 626 1.009829 GTTGTGGCGATGGAGATGTC 58.990 55.000 0.00 0.00 0.00 3.06
626 627 0.460109 TTGTGGCGATGGAGATGTCG 60.460 55.000 0.00 0.00 40.62 4.35
627 628 1.592669 GTGGCGATGGAGATGTCGG 60.593 63.158 0.00 0.00 38.24 4.79
628 629 1.756561 TGGCGATGGAGATGTCGGA 60.757 57.895 0.00 0.00 38.24 4.55
630 631 0.668706 GGCGATGGAGATGTCGGATG 60.669 60.000 0.00 0.00 38.24 3.51
631 632 1.287730 GCGATGGAGATGTCGGATGC 61.288 60.000 0.00 0.00 38.24 3.91
633 634 0.683973 GATGGAGATGTCGGATGCCT 59.316 55.000 0.00 0.00 0.00 4.75
634 635 1.071385 GATGGAGATGTCGGATGCCTT 59.929 52.381 0.00 0.00 0.00 4.35
635 636 0.465705 TGGAGATGTCGGATGCCTTC 59.534 55.000 0.00 0.00 0.00 3.46
636 637 0.250081 GGAGATGTCGGATGCCTTCC 60.250 60.000 0.00 0.00 41.59 3.46
638 639 0.467384 AGATGTCGGATGCCTTCCTG 59.533 55.000 1.73 0.00 42.99 3.86
639 640 0.465705 GATGTCGGATGCCTTCCTGA 59.534 55.000 1.73 0.00 42.99 3.86
640 641 0.467384 ATGTCGGATGCCTTCCTGAG 59.533 55.000 1.73 0.00 42.99 3.35
641 642 1.522580 GTCGGATGCCTTCCTGAGC 60.523 63.158 1.73 0.00 42.99 4.26
642 643 2.203126 CGGATGCCTTCCTGAGCC 60.203 66.667 1.73 0.00 42.99 4.70
643 644 2.203126 GGATGCCTTCCTGAGCCG 60.203 66.667 0.00 0.00 41.78 5.52
644 645 2.203126 GATGCCTTCCTGAGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
645 646 4.496336 ATGCCTTCCTGAGCCGGC 62.496 66.667 21.89 21.89 42.78 6.13
649 650 3.458163 CTTCCTGAGCCGGCGGTA 61.458 66.667 28.82 13.39 0.00 4.02
650 651 3.432051 CTTCCTGAGCCGGCGGTAG 62.432 68.421 28.82 21.55 0.00 3.18
652 653 3.905678 CCTGAGCCGGCGGTAGAG 61.906 72.222 28.82 18.95 0.00 2.43
653 654 4.577246 CTGAGCCGGCGGTAGAGC 62.577 72.222 28.82 12.70 0.00 4.09
664 665 1.068250 GGTAGAGCCGAGGTGATGC 59.932 63.158 0.00 0.00 0.00 3.91
665 666 1.299468 GTAGAGCCGAGGTGATGCG 60.299 63.158 0.00 0.00 0.00 4.73
666 667 1.753078 TAGAGCCGAGGTGATGCGT 60.753 57.895 0.00 0.00 0.00 5.24
667 668 1.725557 TAGAGCCGAGGTGATGCGTC 61.726 60.000 0.00 0.00 0.00 5.19
668 669 4.148825 AGCCGAGGTGATGCGTCC 62.149 66.667 2.83 0.00 0.00 4.79
670 671 2.501128 CCGAGGTGATGCGTCCAT 59.499 61.111 2.83 0.00 0.00 3.41
671 672 1.884464 CCGAGGTGATGCGTCCATG 60.884 63.158 2.83 0.00 0.00 3.66
674 675 3.211963 GGTGATGCGTCCATGGCC 61.212 66.667 6.96 0.00 0.00 5.36
675 676 2.438254 GTGATGCGTCCATGGCCA 60.438 61.111 8.56 8.56 0.00 5.36
676 677 1.825191 GTGATGCGTCCATGGCCAT 60.825 57.895 14.09 14.09 0.00 4.40
677 678 1.526686 TGATGCGTCCATGGCCATC 60.527 57.895 17.61 22.55 0.00 3.51
678 679 2.592574 ATGCGTCCATGGCCATCG 60.593 61.111 17.61 18.06 0.00 3.84
679 680 4.854924 TGCGTCCATGGCCATCGG 62.855 66.667 17.61 20.24 0.00 4.18
681 682 4.175337 CGTCCATGGCCATCGGGT 62.175 66.667 25.08 2.34 36.17 5.28
682 683 2.203209 GTCCATGGCCATCGGGTC 60.203 66.667 25.08 15.82 40.08 4.46
684 685 2.111878 CCATGGCCATCGGGTCTC 59.888 66.667 17.61 0.00 40.42 3.36
685 686 2.111878 CATGGCCATCGGGTCTCC 59.888 66.667 17.61 0.00 40.42 3.71
731 732 2.363795 CAGCTCGGTGGGGGAGTA 60.364 66.667 0.00 0.00 34.00 2.59
733 734 2.043248 GCTCGGTGGGGGAGTAGA 60.043 66.667 0.00 0.00 34.00 2.59
734 735 2.424733 GCTCGGTGGGGGAGTAGAC 61.425 68.421 0.00 0.00 34.00 2.59
735 736 1.000019 CTCGGTGGGGGAGTAGACA 60.000 63.158 0.00 0.00 0.00 3.41
736 737 1.000019 TCGGTGGGGGAGTAGACAG 60.000 63.158 0.00 0.00 0.00 3.51
738 739 1.612442 GGTGGGGGAGTAGACAGCA 60.612 63.158 0.00 0.00 0.00 4.41
739 740 1.617947 GGTGGGGGAGTAGACAGCAG 61.618 65.000 0.00 0.00 0.00 4.24
740 741 1.990060 TGGGGGAGTAGACAGCAGC 60.990 63.158 0.00 0.00 0.00 5.25
741 742 2.496817 GGGGAGTAGACAGCAGCG 59.503 66.667 0.00 0.00 0.00 5.18
742 743 2.496817 GGGAGTAGACAGCAGCGG 59.503 66.667 0.00 0.00 0.00 5.52
743 744 2.352032 GGGAGTAGACAGCAGCGGT 61.352 63.158 0.00 0.00 0.00 5.68
744 745 1.153745 GGAGTAGACAGCAGCGGTG 60.154 63.158 10.98 10.98 37.06 4.94
747 748 0.972983 AGTAGACAGCAGCGGTGGAT 60.973 55.000 17.54 0.00 35.13 3.41
748 749 0.528684 GTAGACAGCAGCGGTGGATC 60.529 60.000 17.54 0.00 35.13 3.36
750 751 1.812922 GACAGCAGCGGTGGATCTG 60.813 63.158 17.54 16.66 35.13 2.90
751 752 2.513204 CAGCAGCGGTGGATCTGG 60.513 66.667 17.54 0.00 0.00 3.86
753 754 3.785859 GCAGCGGTGGATCTGGGA 61.786 66.667 17.54 0.00 0.00 4.37
755 756 1.528824 CAGCGGTGGATCTGGGATT 59.471 57.895 6.74 0.00 0.00 3.01
756 757 0.816825 CAGCGGTGGATCTGGGATTG 60.817 60.000 6.74 0.00 0.00 2.67
757 758 1.224592 GCGGTGGATCTGGGATTGT 59.775 57.895 0.00 0.00 0.00 2.71
760 761 1.745087 CGGTGGATCTGGGATTGTTTG 59.255 52.381 0.00 0.00 0.00 2.93
761 762 1.478105 GGTGGATCTGGGATTGTTTGC 59.522 52.381 0.00 0.00 0.00 3.68
762 763 1.133025 GTGGATCTGGGATTGTTTGCG 59.867 52.381 0.00 0.00 0.00 4.85
764 765 1.133025 GGATCTGGGATTGTTTGCGTG 59.867 52.381 0.00 0.00 0.00 5.34
765 766 1.812571 GATCTGGGATTGTTTGCGTGT 59.187 47.619 0.00 0.00 0.00 4.49
766 767 1.234821 TCTGGGATTGTTTGCGTGTC 58.765 50.000 0.00 0.00 0.00 3.67
767 768 0.110238 CTGGGATTGTTTGCGTGTCG 60.110 55.000 0.00 0.00 0.00 4.35
768 769 0.816018 TGGGATTGTTTGCGTGTCGT 60.816 50.000 0.00 0.00 0.00 4.34
769 770 0.385473 GGGATTGTTTGCGTGTCGTG 60.385 55.000 0.00 0.00 0.00 4.35
770 771 0.385473 GGATTGTTTGCGTGTCGTGG 60.385 55.000 0.00 0.00 0.00 4.94
771 772 0.385473 GATTGTTTGCGTGTCGTGGG 60.385 55.000 0.00 0.00 0.00 4.61
773 774 1.707239 TTGTTTGCGTGTCGTGGGTC 61.707 55.000 0.00 0.00 0.00 4.46
776 777 4.634133 TGCGTGTCGTGGGTCGTC 62.634 66.667 0.00 0.00 40.80 4.20
777 778 4.634133 GCGTGTCGTGGGTCGTCA 62.634 66.667 0.00 0.00 40.80 4.35
778 779 2.428569 CGTGTCGTGGGTCGTCAG 60.429 66.667 0.00 0.00 38.12 3.51
780 781 3.299977 TGTCGTGGGTCGTCAGGG 61.300 66.667 0.00 0.00 40.80 4.45
781 782 4.065281 GTCGTGGGTCGTCAGGGG 62.065 72.222 0.00 0.00 40.80 4.79
800 801 4.828072 GGGGGAGAATATCAGATGGTAC 57.172 50.000 0.00 0.00 0.00 3.34
801 802 4.430441 GGGGGAGAATATCAGATGGTACT 58.570 47.826 0.00 0.00 0.00 2.73
804 805 5.544176 GGGGAGAATATCAGATGGTACTTCA 59.456 44.000 0.00 0.00 0.00 3.02
806 807 7.327214 GGGAGAATATCAGATGGTACTTCATC 58.673 42.308 4.45 4.45 42.73 2.92
807 808 7.327214 GGAGAATATCAGATGGTACTTCATCC 58.673 42.308 8.09 0.88 43.25 3.51
810 811 7.512058 AGAATATCAGATGGTACTTCATCCTGT 59.488 37.037 8.09 0.00 43.25 4.00
811 812 8.727100 AATATCAGATGGTACTTCATCCTGTA 57.273 34.615 8.09 1.56 43.25 2.74
812 813 5.854010 TCAGATGGTACTTCATCCTGTAC 57.146 43.478 8.09 0.00 43.25 2.90
813 814 5.519808 TCAGATGGTACTTCATCCTGTACT 58.480 41.667 8.09 0.00 43.25 2.73
814 815 6.669631 TCAGATGGTACTTCATCCTGTACTA 58.330 40.000 8.09 0.00 43.25 1.82
815 816 6.773200 TCAGATGGTACTTCATCCTGTACTAG 59.227 42.308 8.09 0.00 43.25 2.57
817 818 7.285629 CAGATGGTACTTCATCCTGTACTAGAA 59.714 40.741 0.00 0.00 43.25 2.10
818 819 8.007742 AGATGGTACTTCATCCTGTACTAGAAT 58.992 37.037 0.00 0.00 43.25 2.40
819 820 7.584122 TGGTACTTCATCCTGTACTAGAATC 57.416 40.000 0.00 0.00 39.04 2.52
821 822 7.285629 TGGTACTTCATCCTGTACTAGAATCTG 59.714 40.741 0.00 0.00 39.04 2.90
823 824 7.106439 ACTTCATCCTGTACTAGAATCTGTG 57.894 40.000 0.00 0.00 0.00 3.66
824 825 5.521906 TCATCCTGTACTAGAATCTGTGC 57.478 43.478 0.00 0.00 0.00 4.57
826 827 2.688446 TCCTGTACTAGAATCTGTGCCG 59.312 50.000 0.00 0.00 0.00 5.69
827 828 2.427453 CCTGTACTAGAATCTGTGCCGT 59.573 50.000 0.00 0.00 0.00 5.68
828 829 3.489398 CCTGTACTAGAATCTGTGCCGTC 60.489 52.174 0.00 0.00 0.00 4.79
831 832 2.025155 ACTAGAATCTGTGCCGTCGAT 58.975 47.619 0.00 0.00 0.00 3.59
832 833 2.427453 ACTAGAATCTGTGCCGTCGATT 59.573 45.455 0.00 0.00 0.00 3.34
834 835 2.002586 AGAATCTGTGCCGTCGATTTG 58.997 47.619 0.00 0.00 0.00 2.32
835 836 1.732259 GAATCTGTGCCGTCGATTTGT 59.268 47.619 0.00 0.00 0.00 2.83
836 837 2.665649 ATCTGTGCCGTCGATTTGTA 57.334 45.000 0.00 0.00 0.00 2.41
838 839 2.967362 TCTGTGCCGTCGATTTGTAAT 58.033 42.857 0.00 0.00 0.00 1.89
839 840 2.927477 TCTGTGCCGTCGATTTGTAATC 59.073 45.455 0.00 0.00 0.00 1.75
842 843 2.417239 GTGCCGTCGATTTGTAATCCAA 59.583 45.455 0.00 0.00 0.00 3.53
843 844 2.417239 TGCCGTCGATTTGTAATCCAAC 59.583 45.455 0.00 0.00 31.20 3.77
844 845 2.536130 GCCGTCGATTTGTAATCCAACG 60.536 50.000 0.00 11.78 31.20 4.10
845 846 2.029970 CCGTCGATTTGTAATCCAACGG 59.970 50.000 18.45 18.45 37.45 4.44
847 848 3.241868 CGTCGATTTGTAATCCAACGGTC 60.242 47.826 11.25 0.00 31.20 4.79
848 849 3.063045 GTCGATTTGTAATCCAACGGTCC 59.937 47.826 0.00 0.00 31.20 4.46
850 851 3.063452 CGATTTGTAATCCAACGGTCCAG 59.937 47.826 0.00 0.00 31.20 3.86
851 852 3.773418 TTTGTAATCCAACGGTCCAGA 57.227 42.857 0.00 0.00 31.20 3.86
852 853 3.992943 TTGTAATCCAACGGTCCAGAT 57.007 42.857 0.00 0.00 0.00 2.90
853 854 3.992943 TGTAATCCAACGGTCCAGATT 57.007 42.857 5.81 5.81 33.66 2.40
854 855 3.869065 TGTAATCCAACGGTCCAGATTC 58.131 45.455 4.21 0.15 31.63 2.52
855 856 3.517901 TGTAATCCAACGGTCCAGATTCT 59.482 43.478 4.21 0.00 31.63 2.40
856 857 4.712829 TGTAATCCAACGGTCCAGATTCTA 59.287 41.667 4.21 0.00 31.63 2.10
858 859 3.819564 TCCAACGGTCCAGATTCTATG 57.180 47.619 0.00 0.00 0.00 2.23
859 860 2.158957 TCCAACGGTCCAGATTCTATGC 60.159 50.000 0.00 0.00 0.00 3.14
860 861 2.158900 CCAACGGTCCAGATTCTATGCT 60.159 50.000 0.00 0.00 0.00 3.79
861 862 3.069586 CCAACGGTCCAGATTCTATGCTA 59.930 47.826 0.00 0.00 0.00 3.49
862 863 4.302455 CAACGGTCCAGATTCTATGCTAG 58.698 47.826 0.00 0.00 0.00 3.42
864 865 3.570550 ACGGTCCAGATTCTATGCTAGTC 59.429 47.826 0.00 0.00 0.00 2.59
866 867 3.570559 GTCCAGATTCTATGCTAGTCGC 58.429 50.000 0.00 0.00 39.77 5.19
867 868 3.254657 GTCCAGATTCTATGCTAGTCGCT 59.745 47.826 0.00 0.00 40.11 4.93
868 869 3.504134 TCCAGATTCTATGCTAGTCGCTC 59.496 47.826 0.00 0.00 40.11 5.03
869 870 3.366883 CCAGATTCTATGCTAGTCGCTCC 60.367 52.174 0.00 0.00 40.11 4.70
870 871 2.823154 AGATTCTATGCTAGTCGCTCCC 59.177 50.000 0.00 0.00 40.11 4.30
871 872 0.952280 TTCTATGCTAGTCGCTCCCG 59.048 55.000 0.00 0.00 40.11 5.14
873 874 0.889638 CTATGCTAGTCGCTCCCGGA 60.890 60.000 0.73 0.00 40.11 5.14
874 875 0.466739 TATGCTAGTCGCTCCCGGAA 60.467 55.000 0.73 0.00 40.11 4.30
875 876 1.739338 ATGCTAGTCGCTCCCGGAAG 61.739 60.000 0.73 0.00 40.11 3.46
877 878 1.099879 GCTAGTCGCTCCCGGAAGTA 61.100 60.000 0.73 0.00 35.14 2.24
878 879 1.386533 CTAGTCGCTCCCGGAAGTAA 58.613 55.000 0.73 0.00 34.56 2.24
880 881 0.323178 AGTCGCTCCCGGAAGTAAGA 60.323 55.000 0.73 0.00 34.56 2.10
881 882 0.100861 GTCGCTCCCGGAAGTAAGAG 59.899 60.000 0.73 0.00 34.56 2.85
884 885 0.460722 GCTCCCGGAAGTAAGAGACC 59.539 60.000 0.73 0.00 0.00 3.85
885 886 1.848652 CTCCCGGAAGTAAGAGACCA 58.151 55.000 0.73 0.00 0.00 4.02
886 887 1.751924 CTCCCGGAAGTAAGAGACCAG 59.248 57.143 0.73 0.00 0.00 4.00
887 888 1.356738 TCCCGGAAGTAAGAGACCAGA 59.643 52.381 0.73 0.00 0.00 3.86
888 889 1.477295 CCCGGAAGTAAGAGACCAGAC 59.523 57.143 0.73 0.00 0.00 3.51
889 890 1.477295 CCGGAAGTAAGAGACCAGACC 59.523 57.143 0.00 0.00 0.00 3.85
890 891 1.132643 CGGAAGTAAGAGACCAGACCG 59.867 57.143 0.00 0.00 0.00 4.79
891 892 1.477295 GGAAGTAAGAGACCAGACCGG 59.523 57.143 0.00 0.00 42.50 5.28
892 893 2.444421 GAAGTAAGAGACCAGACCGGA 58.556 52.381 9.46 0.00 38.63 5.14
893 894 1.836802 AGTAAGAGACCAGACCGGAC 58.163 55.000 9.46 0.10 38.63 4.79
894 895 0.450983 GTAAGAGACCAGACCGGACG 59.549 60.000 9.46 0.00 38.63 4.79
911 912 1.301401 CGGAACCTGGTTCGCTTCA 60.301 57.895 28.08 0.00 42.78 3.02
1266 4990 1.807142 CGCTTTTCCCTTTCTCTCCAC 59.193 52.381 0.00 0.00 0.00 4.02
1278 5002 3.123620 CTCCACCTGCGAGCTTGC 61.124 66.667 19.70 19.70 0.00 4.01
1280 5004 4.711949 CCACCTGCGAGCTTGCCT 62.712 66.667 23.34 2.72 0.00 4.75
1290 5014 2.397549 CGAGCTTGCCTTTTCCTTTTG 58.602 47.619 0.00 0.00 0.00 2.44
1295 5019 2.888834 TGCCTTTTCCTTTTGAGCAC 57.111 45.000 0.00 0.00 0.00 4.40
1354 5094 9.453325 GATTTATTCCGTTTATTTCGCCATTTA 57.547 29.630 0.00 0.00 0.00 1.40
1398 5144 2.930385 ATCGCTTCGATGCAGGGTGG 62.930 60.000 21.52 5.81 45.24 4.61
1474 5223 3.919216 AGTCTAGCTGAATGTGTGTCAC 58.081 45.455 0.00 0.00 34.56 3.67
1514 5263 4.870123 ATCCAAGTGCTGTGCATTAAAA 57.130 36.364 0.00 0.00 41.91 1.52
1586 5335 6.596106 TGCATGCTTCCGAAAATTAAGTACTA 59.404 34.615 20.33 0.00 0.00 1.82
1699 5459 0.874390 TTGTCGCATGAGAAGCCAAC 59.126 50.000 0.00 0.00 0.00 3.77
1886 5647 3.059393 GCAAATCTGAAAGCAAAGCAACC 60.059 43.478 0.00 0.00 0.00 3.77
2163 7293 3.372025 GGATAGGAAATCTGTTGGTGCCT 60.372 47.826 0.00 0.00 0.00 4.75
2282 7413 6.442513 AAGCAAGCTGGTAATAATCAGTTC 57.557 37.500 0.00 0.00 33.81 3.01
2356 7494 2.032965 TGGCTACCCTTCCTTGTACA 57.967 50.000 0.00 0.00 0.00 2.90
2382 7520 1.318576 GGGCCCATTATACTGCACAC 58.681 55.000 19.95 0.00 0.00 3.82
2391 7529 2.185004 ATACTGCACACGGAAGCTTT 57.815 45.000 0.00 0.00 0.00 3.51
2566 7712 7.201839 GGGTACACAATTACTTTTCTGGAACAA 60.202 37.037 0.00 0.00 38.70 2.83
2583 7729 5.596361 TGGAACAACAAATAAGCAGGAAAGA 59.404 36.000 0.00 0.00 31.92 2.52
2724 7883 2.222863 CGAACTTTATTGTAACCCGGCG 60.223 50.000 0.00 0.00 0.00 6.46
2810 8060 7.329717 CAGACTACAGAATCTTGTCAAACCTAC 59.670 40.741 9.39 0.00 32.56 3.18
2971 8224 6.237901 TCACTGCTGACCATACTTATGTTTT 58.762 36.000 0.00 0.00 31.82 2.43
3104 10058 3.633525 AGCATGCTTTTGACAGTTCTTCA 59.366 39.130 16.30 0.00 0.00 3.02
3160 10731 4.782156 TGTGTTTGTGTAAATGCTGATCG 58.218 39.130 0.00 0.00 0.00 3.69
3176 10747 6.042777 TGCTGATCGTATTTAAGAAGTCTGG 58.957 40.000 0.00 0.00 0.00 3.86
3379 12040 4.041075 TGGGTCACAGTTTAGCAGATGTAA 59.959 41.667 0.00 0.00 0.00 2.41
3380 12041 4.631813 GGGTCACAGTTTAGCAGATGTAAG 59.368 45.833 0.00 0.00 0.00 2.34
3381 12042 5.238583 GGTCACAGTTTAGCAGATGTAAGT 58.761 41.667 0.00 0.00 0.00 2.24
3382 12043 6.395629 GGTCACAGTTTAGCAGATGTAAGTA 58.604 40.000 0.00 0.00 0.00 2.24
3468 12133 4.265073 AGAATATGCTTCACACTGGGTTC 58.735 43.478 0.00 0.00 0.00 3.62
3777 16383 0.613012 ATGCAAGCCCAAGGAAGACC 60.613 55.000 0.00 0.00 0.00 3.85
3903 16509 0.250234 TTGATGGAAGCGACTCAGGG 59.750 55.000 0.00 0.00 0.00 4.45
4073 16689 1.617322 ATGATCATGATGCACCTGCC 58.383 50.000 14.30 0.00 41.18 4.85
4076 16692 0.032912 ATCATGATGCACCTGCCCAA 60.033 50.000 7.59 0.00 41.18 4.12
4077 16693 0.251698 TCATGATGCACCTGCCCAAA 60.252 50.000 0.00 0.00 41.18 3.28
4078 16694 0.609151 CATGATGCACCTGCCCAAAA 59.391 50.000 0.00 0.00 41.18 2.44
4080 16696 0.178967 TGATGCACCTGCCCAAAAGA 60.179 50.000 0.00 0.00 41.18 2.52
4081 16697 0.968405 GATGCACCTGCCCAAAAGAA 59.032 50.000 0.00 0.00 41.18 2.52
4086 17052 1.115326 ACCTGCCCAAAAGAACTGGC 61.115 55.000 0.00 0.00 44.27 4.85
4088 17054 1.820010 CTGCCCAAAAGAACTGGCCC 61.820 60.000 0.00 0.00 43.35 5.80
4103 17069 1.137404 GCCCTAATTGTGCTGTGCG 59.863 57.895 0.00 0.00 0.00 5.34
4109 17075 0.961019 AATTGTGCTGTGCGATGGTT 59.039 45.000 0.00 0.00 0.00 3.67
4110 17076 0.961019 ATTGTGCTGTGCGATGGTTT 59.039 45.000 0.00 0.00 0.00 3.27
4127 17094 7.326789 GCGATGGTTTTCATACATCATATTTGG 59.673 37.037 0.00 0.00 40.68 3.28
4374 17351 1.451927 TCAGATGCCGGCCACAATC 60.452 57.895 26.77 19.94 0.00 2.67
4505 17522 2.476997 GACTCTGGAAAACTGCGACTTC 59.523 50.000 0.00 0.00 0.00 3.01
4620 17638 4.869861 AGTTGTTTGGTTGAATCAGTTTGC 59.130 37.500 0.00 0.00 0.00 3.68
4633 17651 2.642311 TCAGTTTGCTGATTGACCCCTA 59.358 45.455 0.00 0.00 45.94 3.53
4777 17800 2.094894 CCACAGCTGAAGCAGAATAACG 59.905 50.000 23.35 0.00 45.16 3.18
4780 17803 2.606725 CAGCTGAAGCAGAATAACGGAG 59.393 50.000 8.42 0.00 45.16 4.63
4784 17813 2.289382 TGAAGCAGAATAACGGAGCACA 60.289 45.455 0.00 0.00 0.00 4.57
4808 17837 4.353737 CTCACCAAGTCAACATTGTTGTG 58.646 43.478 24.71 17.10 35.83 3.33
4949 18411 6.357367 TGAATAGAACTAAATGAAGAGGGGC 58.643 40.000 0.00 0.00 0.00 5.80
4986 18448 9.778993 CTCAATGAGAAAAATGGTAGTTACATG 57.221 33.333 3.77 0.00 0.00 3.21
4987 18449 8.243426 TCAATGAGAAAAATGGTAGTTACATGC 58.757 33.333 0.00 0.00 0.00 4.06
4988 18450 7.701539 ATGAGAAAAATGGTAGTTACATGCA 57.298 32.000 0.00 0.00 0.00 3.96
4989 18451 7.701539 TGAGAAAAATGGTAGTTACATGCAT 57.298 32.000 0.00 0.00 0.00 3.96
5224 18722 8.792830 TTCCCTAGTAGGATTCTTAGCATTAA 57.207 34.615 18.43 0.00 37.67 1.40
5235 18733 5.250235 TCTTAGCATTAAGTGAGACCTCG 57.750 43.478 0.00 0.00 37.97 4.63
5255 18753 7.399634 ACCTCGTGGAAATTTTCTAAGGATTA 58.600 34.615 16.04 0.00 37.04 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.925700 GTCATTATTTAGTTTTCCCTGCAAAAG 58.074 33.333 0.00 0.00 0.00 2.27
211 212 3.550437 AGGACTTAGATGTGATGGCAC 57.450 47.619 0.00 0.00 45.35 5.01
212 213 4.040829 CCATAGGACTTAGATGTGATGGCA 59.959 45.833 0.00 0.00 0.00 4.92
213 214 4.573900 CCATAGGACTTAGATGTGATGGC 58.426 47.826 0.00 0.00 0.00 4.40
214 215 4.040829 TGCCATAGGACTTAGATGTGATGG 59.959 45.833 0.00 0.00 36.49 3.51
215 216 5.219343 TGCCATAGGACTTAGATGTGATG 57.781 43.478 0.00 0.00 0.00 3.07
216 217 6.043590 TCAATGCCATAGGACTTAGATGTGAT 59.956 38.462 0.00 0.00 0.00 3.06
217 218 5.366477 TCAATGCCATAGGACTTAGATGTGA 59.634 40.000 0.00 0.00 0.00 3.58
218 219 5.614308 TCAATGCCATAGGACTTAGATGTG 58.386 41.667 0.00 0.00 0.00 3.21
219 220 5.894298 TCAATGCCATAGGACTTAGATGT 57.106 39.130 0.00 0.00 0.00 3.06
220 221 6.709281 AGATCAATGCCATAGGACTTAGATG 58.291 40.000 0.00 0.00 0.00 2.90
222 223 6.753913 AAGATCAATGCCATAGGACTTAGA 57.246 37.500 0.00 0.00 0.00 2.10
223 224 7.445121 TGTAAGATCAATGCCATAGGACTTAG 58.555 38.462 0.00 0.00 0.00 2.18
224 225 7.373617 TGTAAGATCAATGCCATAGGACTTA 57.626 36.000 0.00 0.00 0.00 2.24
226 227 5.894298 TGTAAGATCAATGCCATAGGACT 57.106 39.130 0.00 0.00 0.00 3.85
228 229 5.310331 TCCATGTAAGATCAATGCCATAGGA 59.690 40.000 0.00 0.00 0.00 2.94
229 230 5.563592 TCCATGTAAGATCAATGCCATAGG 58.436 41.667 0.00 0.00 0.00 2.57
232 233 5.314718 TCTCCATGTAAGATCAATGCCAT 57.685 39.130 0.00 0.00 0.00 4.40
234 235 5.106791 CGAATCTCCATGTAAGATCAATGCC 60.107 44.000 7.97 0.00 32.29 4.40
235 236 5.468072 ACGAATCTCCATGTAAGATCAATGC 59.532 40.000 7.97 0.00 32.29 3.56
236 237 6.481313 ACACGAATCTCCATGTAAGATCAATG 59.519 38.462 7.97 8.64 32.29 2.82
237 238 6.481313 CACACGAATCTCCATGTAAGATCAAT 59.519 38.462 7.97 0.00 32.29 2.57
239 240 5.127031 TCACACGAATCTCCATGTAAGATCA 59.873 40.000 7.97 0.00 32.29 2.92
240 241 5.592054 TCACACGAATCTCCATGTAAGATC 58.408 41.667 7.97 0.00 32.29 2.75
241 242 5.595885 CTCACACGAATCTCCATGTAAGAT 58.404 41.667 0.00 2.75 34.96 2.40
242 243 4.678044 GCTCACACGAATCTCCATGTAAGA 60.678 45.833 0.00 0.00 0.00 2.10
244 245 3.056179 TGCTCACACGAATCTCCATGTAA 60.056 43.478 0.00 0.00 0.00 2.41
245 246 2.495669 TGCTCACACGAATCTCCATGTA 59.504 45.455 0.00 0.00 0.00 2.29
246 247 1.276138 TGCTCACACGAATCTCCATGT 59.724 47.619 0.00 0.00 0.00 3.21
247 248 2.014335 TGCTCACACGAATCTCCATG 57.986 50.000 0.00 0.00 0.00 3.66
248 249 2.996249 ATGCTCACACGAATCTCCAT 57.004 45.000 0.00 0.00 0.00 3.41
249 250 2.768253 AATGCTCACACGAATCTCCA 57.232 45.000 0.00 0.00 0.00 3.86
250 251 3.686726 AGAAAATGCTCACACGAATCTCC 59.313 43.478 0.00 0.00 0.00 3.71
251 252 4.935885 AGAAAATGCTCACACGAATCTC 57.064 40.909 0.00 0.00 0.00 2.75
252 253 4.756642 TCAAGAAAATGCTCACACGAATCT 59.243 37.500 0.00 0.00 0.00 2.40
253 254 5.034554 TCAAGAAAATGCTCACACGAATC 57.965 39.130 0.00 0.00 0.00 2.52
254 255 5.633830 ATCAAGAAAATGCTCACACGAAT 57.366 34.783 0.00 0.00 0.00 3.34
257 258 4.849926 CAGAATCAAGAAAATGCTCACACG 59.150 41.667 0.00 0.00 0.00 4.49
258 259 5.766222 ACAGAATCAAGAAAATGCTCACAC 58.234 37.500 0.00 0.00 0.00 3.82
259 260 6.395426 AACAGAATCAAGAAAATGCTCACA 57.605 33.333 0.00 0.00 0.00 3.58
260 261 7.144000 AGAAACAGAATCAAGAAAATGCTCAC 58.856 34.615 0.00 0.00 0.00 3.51
262 263 8.585189 AAAGAAACAGAATCAAGAAAATGCTC 57.415 30.769 0.00 0.00 0.00 4.26
263 264 8.953368 AAAAGAAACAGAATCAAGAAAATGCT 57.047 26.923 0.00 0.00 0.00 3.79
264 265 9.642312 GAAAAAGAAACAGAATCAAGAAAATGC 57.358 29.630 0.00 0.00 0.00 3.56
267 268 9.927668 ACAGAAAAAGAAACAGAATCAAGAAAA 57.072 25.926 0.00 0.00 0.00 2.29
276 277 9.897744 CAAGCATATACAGAAAAAGAAACAGAA 57.102 29.630 0.00 0.00 0.00 3.02
288 289 8.969260 AGTGATTCAATCAAGCATATACAGAA 57.031 30.769 0.29 0.00 41.69 3.02
290 291 8.074370 CCAAGTGATTCAATCAAGCATATACAG 58.926 37.037 0.29 0.00 41.69 2.74
293 294 7.062322 ACCCAAGTGATTCAATCAAGCATATA 58.938 34.615 0.29 0.00 41.69 0.86
295 296 5.263599 ACCCAAGTGATTCAATCAAGCATA 58.736 37.500 0.29 0.00 41.69 3.14
296 297 4.091549 ACCCAAGTGATTCAATCAAGCAT 58.908 39.130 0.29 0.00 41.69 3.79
297 298 3.499338 ACCCAAGTGATTCAATCAAGCA 58.501 40.909 0.29 0.00 41.69 3.91
311 312 8.198807 AGTTATTAGTTACTGTACACCCAAGT 57.801 34.615 0.00 0.00 0.00 3.16
315 316 7.708322 GCCTTAGTTATTAGTTACTGTACACCC 59.292 40.741 0.00 0.00 0.00 4.61
318 319 8.805175 TGTGCCTTAGTTATTAGTTACTGTACA 58.195 33.333 0.00 0.00 0.00 2.90
319 320 9.813446 ATGTGCCTTAGTTATTAGTTACTGTAC 57.187 33.333 0.00 0.00 0.00 2.90
321 322 8.759782 AGATGTGCCTTAGTTATTAGTTACTGT 58.240 33.333 0.00 0.00 0.00 3.55
345 346 5.532664 TGTCTAGAGCGAGTACATCTAGA 57.467 43.478 16.70 16.70 45.75 2.43
346 347 4.151689 GCTGTCTAGAGCGAGTACATCTAG 59.848 50.000 13.86 13.86 42.51 2.43
347 348 4.059511 GCTGTCTAGAGCGAGTACATCTA 58.940 47.826 0.00 0.00 0.00 1.98
348 349 2.875933 GCTGTCTAGAGCGAGTACATCT 59.124 50.000 0.00 0.00 0.00 2.90
349 350 2.614520 TGCTGTCTAGAGCGAGTACATC 59.385 50.000 0.00 0.00 42.32 3.06
350 351 2.644676 TGCTGTCTAGAGCGAGTACAT 58.355 47.619 0.00 0.00 42.32 2.29
351 352 2.109425 TGCTGTCTAGAGCGAGTACA 57.891 50.000 0.00 0.00 42.32 2.90
352 353 5.150683 CAATATGCTGTCTAGAGCGAGTAC 58.849 45.833 0.00 0.00 42.32 2.73
353 354 4.216472 CCAATATGCTGTCTAGAGCGAGTA 59.784 45.833 0.00 0.00 42.32 2.59
355 356 3.005261 ACCAATATGCTGTCTAGAGCGAG 59.995 47.826 0.00 0.00 42.32 5.03
357 358 3.377346 ACCAATATGCTGTCTAGAGCG 57.623 47.619 0.00 0.00 42.32 5.03
358 359 7.433719 CGAATATACCAATATGCTGTCTAGAGC 59.566 40.741 0.00 0.00 39.62 4.09
361 362 6.477033 GCCGAATATACCAATATGCTGTCTAG 59.523 42.308 0.00 0.00 0.00 2.43
362 363 6.071051 TGCCGAATATACCAATATGCTGTCTA 60.071 38.462 0.00 0.00 0.00 2.59
364 365 4.935205 TGCCGAATATACCAATATGCTGTC 59.065 41.667 0.00 0.00 0.00 3.51
366 367 5.181056 TGTTGCCGAATATACCAATATGCTG 59.819 40.000 0.00 0.00 0.00 4.41
368 369 5.049060 TGTGTTGCCGAATATACCAATATGC 60.049 40.000 0.00 0.00 0.00 3.14
369 370 6.552859 TGTGTTGCCGAATATACCAATATG 57.447 37.500 0.00 0.00 0.00 1.78
370 371 6.150976 CCATGTGTTGCCGAATATACCAATAT 59.849 38.462 0.00 0.00 0.00 1.28
371 372 5.471797 CCATGTGTTGCCGAATATACCAATA 59.528 40.000 0.00 0.00 0.00 1.90
372 373 4.278170 CCATGTGTTGCCGAATATACCAAT 59.722 41.667 0.00 0.00 0.00 3.16
373 374 3.629855 CCATGTGTTGCCGAATATACCAA 59.370 43.478 0.00 0.00 0.00 3.67
374 375 3.118223 TCCATGTGTTGCCGAATATACCA 60.118 43.478 0.00 0.00 0.00 3.25
375 376 3.472652 TCCATGTGTTGCCGAATATACC 58.527 45.455 0.00 0.00 0.00 2.73
378 379 1.949525 GCTCCATGTGTTGCCGAATAT 59.050 47.619 0.00 0.00 0.00 1.28
381 382 2.324330 CGCTCCATGTGTTGCCGAA 61.324 57.895 0.00 0.00 0.00 4.30
382 383 2.520465 ATCGCTCCATGTGTTGCCGA 62.520 55.000 0.00 0.00 0.00 5.54
383 384 2.040213 GATCGCTCCATGTGTTGCCG 62.040 60.000 0.00 0.00 0.00 5.69
384 385 1.718757 GGATCGCTCCATGTGTTGCC 61.719 60.000 0.00 0.00 41.64 4.52
386 387 3.157727 TGGATCGCTCCATGTGTTG 57.842 52.632 3.28 0.00 46.95 3.33
395 396 4.938080 TCTCTGTATTTTCTGGATCGCTC 58.062 43.478 0.00 0.00 0.00 5.03
397 398 6.610741 AAATCTCTGTATTTTCTGGATCGC 57.389 37.500 0.00 0.00 0.00 4.58
420 421 6.654959 CCCCCTTTTTAGTTTTCCAAGAAAA 58.345 36.000 0.00 0.00 0.00 2.29
421 422 6.241882 CCCCCTTTTTAGTTTTCCAAGAAA 57.758 37.500 0.00 0.00 0.00 2.52
442 443 3.758931 GTGGCCACGCAAATCCCC 61.759 66.667 22.49 0.00 0.00 4.81
443 444 3.758931 GGTGGCCACGCAAATCCC 61.759 66.667 29.08 9.52 0.00 3.85
444 445 2.988684 TGGTGGCCACGCAAATCC 60.989 61.111 29.08 14.47 0.00 3.01
445 446 1.805428 AACTGGTGGCCACGCAAATC 61.805 55.000 29.08 14.79 0.00 2.17
446 447 1.398958 AAACTGGTGGCCACGCAAAT 61.399 50.000 29.08 15.32 0.00 2.32
447 448 0.752009 TAAACTGGTGGCCACGCAAA 60.752 50.000 29.08 13.69 0.00 3.68
448 449 0.752009 TTAAACTGGTGGCCACGCAA 60.752 50.000 29.08 16.20 0.00 4.85
451 452 1.668628 GCAATTAAACTGGTGGCCACG 60.669 52.381 29.08 18.82 0.00 4.94
453 454 1.617850 CAGCAATTAAACTGGTGGCCA 59.382 47.619 0.00 0.00 38.37 5.36
454 455 2.368655 CAGCAATTAAACTGGTGGCC 57.631 50.000 0.00 0.00 38.37 5.36
460 461 4.749245 AACTCGTCCAGCAATTAAACTG 57.251 40.909 0.00 0.00 0.00 3.16
461 462 4.819630 TCAAACTCGTCCAGCAATTAAACT 59.180 37.500 0.00 0.00 0.00 2.66
462 463 5.103290 TCAAACTCGTCCAGCAATTAAAC 57.897 39.130 0.00 0.00 0.00 2.01
463 464 5.066634 TGTTCAAACTCGTCCAGCAATTAAA 59.933 36.000 0.00 0.00 0.00 1.52
464 465 4.576873 TGTTCAAACTCGTCCAGCAATTAA 59.423 37.500 0.00 0.00 0.00 1.40
465 466 4.130857 TGTTCAAACTCGTCCAGCAATTA 58.869 39.130 0.00 0.00 0.00 1.40
467 468 2.571212 TGTTCAAACTCGTCCAGCAAT 58.429 42.857 0.00 0.00 0.00 3.56
468 469 2.031258 TGTTCAAACTCGTCCAGCAA 57.969 45.000 0.00 0.00 0.00 3.91
470 471 4.742438 TTAATGTTCAAACTCGTCCAGC 57.258 40.909 0.00 0.00 0.00 4.85
472 473 5.563867 GCCAATTAATGTTCAAACTCGTCCA 60.564 40.000 0.00 0.00 0.00 4.02
473 474 4.857037 GCCAATTAATGTTCAAACTCGTCC 59.143 41.667 0.00 0.00 0.00 4.79
474 475 5.457140 TGCCAATTAATGTTCAAACTCGTC 58.543 37.500 0.00 0.00 0.00 4.20
475 476 5.446143 TGCCAATTAATGTTCAAACTCGT 57.554 34.783 0.00 0.00 0.00 4.18
477 478 4.324402 CGCTGCCAATTAATGTTCAAACTC 59.676 41.667 0.00 0.00 0.00 3.01
478 479 4.022416 TCGCTGCCAATTAATGTTCAAACT 60.022 37.500 0.00 0.00 0.00 2.66
479 480 4.233789 TCGCTGCCAATTAATGTTCAAAC 58.766 39.130 0.00 0.00 0.00 2.93
481 482 3.755905 TCTCGCTGCCAATTAATGTTCAA 59.244 39.130 0.00 0.00 0.00 2.69
482 483 3.342719 TCTCGCTGCCAATTAATGTTCA 58.657 40.909 0.00 0.00 0.00 3.18
483 484 3.790123 GCTCTCGCTGCCAATTAATGTTC 60.790 47.826 0.00 0.00 0.00 3.18
484 485 2.098117 GCTCTCGCTGCCAATTAATGTT 59.902 45.455 0.00 0.00 0.00 2.71
486 487 1.672363 TGCTCTCGCTGCCAATTAATG 59.328 47.619 0.00 0.00 36.97 1.90
487 488 1.945394 CTGCTCTCGCTGCCAATTAAT 59.055 47.619 0.00 0.00 36.97 1.40
490 491 0.321919 TTCTGCTCTCGCTGCCAATT 60.322 50.000 0.00 0.00 36.97 2.32
491 492 0.107312 ATTCTGCTCTCGCTGCCAAT 60.107 50.000 0.00 0.00 36.97 3.16
494 495 1.720301 CAATTCTGCTCTCGCTGCC 59.280 57.895 0.00 0.00 36.97 4.85
495 496 1.062206 GCAATTCTGCTCTCGCTGC 59.938 57.895 0.00 0.00 45.74 5.25
505 506 5.775686 TCACATCTTTTGGAAGCAATTCTG 58.224 37.500 0.00 0.00 32.75 3.02
507 508 7.662604 ATTTCACATCTTTTGGAAGCAATTC 57.337 32.000 0.00 0.00 32.75 2.17
508 509 8.454570 AAATTTCACATCTTTTGGAAGCAATT 57.545 26.923 0.00 0.00 32.75 2.32
509 510 9.729281 ATAAATTTCACATCTTTTGGAAGCAAT 57.271 25.926 0.00 0.00 32.75 3.56
511 512 9.859427 CTATAAATTTCACATCTTTTGGAAGCA 57.141 29.630 0.00 0.00 32.75 3.91
512 513 9.305925 CCTATAAATTTCACATCTTTTGGAAGC 57.694 33.333 0.00 0.00 32.75 3.86
524 525 9.238368 CCTCCTGTTTTACCTATAAATTTCACA 57.762 33.333 0.00 0.00 30.33 3.58
525 526 9.457436 TCCTCCTGTTTTACCTATAAATTTCAC 57.543 33.333 0.00 0.00 30.33 3.18
526 527 9.681062 CTCCTCCTGTTTTACCTATAAATTTCA 57.319 33.333 0.00 0.00 30.33 2.69
527 528 9.121658 CCTCCTCCTGTTTTACCTATAAATTTC 57.878 37.037 0.00 0.00 30.33 2.17
528 529 8.842764 TCCTCCTCCTGTTTTACCTATAAATTT 58.157 33.333 0.00 0.00 30.33 1.82
530 531 7.849904 TCTCCTCCTCCTGTTTTACCTATAAAT 59.150 37.037 0.00 0.00 30.33 1.40
531 532 7.194050 TCTCCTCCTCCTGTTTTACCTATAAA 58.806 38.462 0.00 0.00 0.00 1.40
532 533 6.748969 TCTCCTCCTCCTGTTTTACCTATAA 58.251 40.000 0.00 0.00 0.00 0.98
533 534 6.161705 TCTCTCCTCCTCCTGTTTTACCTATA 59.838 42.308 0.00 0.00 0.00 1.31
535 536 4.294168 TCTCTCCTCCTCCTGTTTTACCTA 59.706 45.833 0.00 0.00 0.00 3.08
536 537 3.077695 TCTCTCCTCCTCCTGTTTTACCT 59.922 47.826 0.00 0.00 0.00 3.08
537 538 3.442076 TCTCTCCTCCTCCTGTTTTACC 58.558 50.000 0.00 0.00 0.00 2.85
539 540 4.570933 CCTCTCTCTCCTCCTCCTGTTTTA 60.571 50.000 0.00 0.00 0.00 1.52
540 541 3.440127 CTCTCTCTCCTCCTCCTGTTTT 58.560 50.000 0.00 0.00 0.00 2.43
541 542 2.292192 CCTCTCTCTCCTCCTCCTGTTT 60.292 54.545 0.00 0.00 0.00 2.83
542 543 1.287739 CCTCTCTCTCCTCCTCCTGTT 59.712 57.143 0.00 0.00 0.00 3.16
543 544 0.926293 CCTCTCTCTCCTCCTCCTGT 59.074 60.000 0.00 0.00 0.00 4.00
544 545 0.185901 CCCTCTCTCTCCTCCTCCTG 59.814 65.000 0.00 0.00 0.00 3.86
545 546 0.998945 CCCCTCTCTCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
547 548 1.158007 ATCCCCTCTCTCTCCTCCTC 58.842 60.000 0.00 0.00 0.00 3.71
548 549 1.220236 CAATCCCCTCTCTCTCCTCCT 59.780 57.143 0.00 0.00 0.00 3.69
549 550 1.715785 CAATCCCCTCTCTCTCCTCC 58.284 60.000 0.00 0.00 0.00 4.30
550 551 1.715785 CCAATCCCCTCTCTCTCCTC 58.284 60.000 0.00 0.00 0.00 3.71
551 552 0.267356 CCCAATCCCCTCTCTCTCCT 59.733 60.000 0.00 0.00 0.00 3.69
553 554 0.766288 CCCCCAATCCCCTCTCTCTC 60.766 65.000 0.00 0.00 0.00 3.20
555 556 1.004891 ACCCCCAATCCCCTCTCTC 59.995 63.158 0.00 0.00 0.00 3.20
559 560 4.143301 GCCACCCCCAATCCCCTC 62.143 72.222 0.00 0.00 0.00 4.30
579 580 1.800315 CCTCGTCCAAGCGTGTACG 60.800 63.158 11.29 11.29 43.27 3.67
580 581 0.456312 CTCCTCGTCCAAGCGTGTAC 60.456 60.000 0.00 0.00 0.00 2.90
581 582 1.592400 CCTCCTCGTCCAAGCGTGTA 61.592 60.000 0.00 0.00 0.00 2.90
582 583 2.651361 CTCCTCGTCCAAGCGTGT 59.349 61.111 0.00 0.00 0.00 4.49
583 584 2.125912 CCTCCTCGTCCAAGCGTG 60.126 66.667 0.00 0.00 0.00 5.34
584 585 3.382832 CCCTCCTCGTCCAAGCGT 61.383 66.667 0.00 0.00 0.00 5.07
585 586 3.068691 TCCCTCCTCGTCCAAGCG 61.069 66.667 0.00 0.00 0.00 4.68
586 587 2.896443 CTCCCTCCTCGTCCAAGC 59.104 66.667 0.00 0.00 0.00 4.01
587 588 2.896443 GCTCCCTCCTCGTCCAAG 59.104 66.667 0.00 0.00 0.00 3.61
588 589 3.068691 CGCTCCCTCCTCGTCCAA 61.069 66.667 0.00 0.00 0.00 3.53
591 592 3.069318 AACCGCTCCCTCCTCGTC 61.069 66.667 0.00 0.00 0.00 4.20
593 594 3.382832 ACAACCGCTCCCTCCTCG 61.383 66.667 0.00 0.00 0.00 4.63
594 595 2.266055 CACAACCGCTCCCTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
595 596 3.322466 CCACAACCGCTCCCTCCT 61.322 66.667 0.00 0.00 0.00 3.69
600 601 3.499737 CATCGCCACAACCGCTCC 61.500 66.667 0.00 0.00 0.00 4.70
601 602 3.499737 CCATCGCCACAACCGCTC 61.500 66.667 0.00 0.00 0.00 5.03
602 603 3.958147 CTCCATCGCCACAACCGCT 62.958 63.158 0.00 0.00 0.00 5.52
604 605 1.153369 ATCTCCATCGCCACAACCG 60.153 57.895 0.00 0.00 0.00 4.44
605 606 0.392998 ACATCTCCATCGCCACAACC 60.393 55.000 0.00 0.00 0.00 3.77
607 608 0.460109 CGACATCTCCATCGCCACAA 60.460 55.000 0.00 0.00 0.00 3.33
609 610 1.592669 CCGACATCTCCATCGCCAC 60.593 63.158 0.00 0.00 37.01 5.01
611 612 0.668706 CATCCGACATCTCCATCGCC 60.669 60.000 0.00 0.00 37.01 5.54
613 614 0.668706 GGCATCCGACATCTCCATCG 60.669 60.000 0.00 0.00 38.08 3.84
614 615 0.683973 AGGCATCCGACATCTCCATC 59.316 55.000 0.00 0.00 0.00 3.51
616 617 0.465705 GAAGGCATCCGACATCTCCA 59.534 55.000 0.00 0.00 0.00 3.86
617 618 0.250081 GGAAGGCATCCGACATCTCC 60.250 60.000 0.00 0.00 38.79 3.71
618 619 3.297391 GGAAGGCATCCGACATCTC 57.703 57.895 0.00 0.00 38.79 2.75
633 634 3.458163 CTACCGCCGGCTCAGGAA 61.458 66.667 26.68 5.12 0.00 3.36
634 635 4.435970 TCTACCGCCGGCTCAGGA 62.436 66.667 26.68 14.46 0.00 3.86
635 636 3.905678 CTCTACCGCCGGCTCAGG 61.906 72.222 26.68 21.08 0.00 3.86
636 637 4.577246 GCTCTACCGCCGGCTCAG 62.577 72.222 26.68 17.93 0.00 3.35
647 648 1.299468 CGCATCACCTCGGCTCTAC 60.299 63.158 0.00 0.00 0.00 2.59
648 649 1.725557 GACGCATCACCTCGGCTCTA 61.726 60.000 0.00 0.00 0.00 2.43
649 650 3.069980 GACGCATCACCTCGGCTCT 62.070 63.158 0.00 0.00 0.00 4.09
650 651 2.583593 GACGCATCACCTCGGCTC 60.584 66.667 0.00 0.00 0.00 4.70
652 653 3.740128 ATGGACGCATCACCTCGGC 62.740 63.158 0.00 0.00 0.00 5.54
653 654 1.884464 CATGGACGCATCACCTCGG 60.884 63.158 0.00 0.00 0.00 4.63
654 655 1.884464 CCATGGACGCATCACCTCG 60.884 63.158 5.56 0.00 0.00 4.63
655 656 2.182842 GCCATGGACGCATCACCTC 61.183 63.158 18.40 0.00 0.00 3.85
657 658 3.211963 GGCCATGGACGCATCACC 61.212 66.667 18.40 0.00 0.00 4.02
661 662 2.592574 CGATGGCCATGGACGCAT 60.593 61.111 26.56 2.06 0.00 4.73
664 665 4.175337 ACCCGATGGCCATGGACG 62.175 66.667 27.65 21.66 33.59 4.79
665 666 2.203209 GACCCGATGGCCATGGAC 60.203 66.667 27.65 15.32 33.59 4.02
666 667 2.366837 AGACCCGATGGCCATGGA 60.367 61.111 27.65 0.00 33.59 3.41
667 668 2.111878 GAGACCCGATGGCCATGG 59.888 66.667 26.56 22.96 33.59 3.66
668 669 2.111878 GGAGACCCGATGGCCATG 59.888 66.667 26.56 15.28 33.59 3.66
714 715 2.363795 TACTCCCCCACCGAGCTG 60.364 66.667 0.00 0.00 0.00 4.24
716 717 2.043248 TCTACTCCCCCACCGAGC 60.043 66.667 0.00 0.00 0.00 5.03
717 718 1.000019 TGTCTACTCCCCCACCGAG 60.000 63.158 0.00 0.00 0.00 4.63
718 719 1.000019 CTGTCTACTCCCCCACCGA 60.000 63.158 0.00 0.00 0.00 4.69
719 720 2.722201 GCTGTCTACTCCCCCACCG 61.722 68.421 0.00 0.00 0.00 4.94
721 722 1.901085 CTGCTGTCTACTCCCCCAC 59.099 63.158 0.00 0.00 0.00 4.61
722 723 1.990060 GCTGCTGTCTACTCCCCCA 60.990 63.158 0.00 0.00 0.00 4.96
723 724 2.904131 GCTGCTGTCTACTCCCCC 59.096 66.667 0.00 0.00 0.00 5.40
724 725 2.496817 CGCTGCTGTCTACTCCCC 59.503 66.667 0.00 0.00 0.00 4.81
725 726 2.352032 ACCGCTGCTGTCTACTCCC 61.352 63.158 0.00 0.00 0.00 4.30
726 727 1.153745 CACCGCTGCTGTCTACTCC 60.154 63.158 0.00 0.00 0.00 3.85
727 728 1.153745 CCACCGCTGCTGTCTACTC 60.154 63.158 0.00 0.00 0.00 2.59
728 729 0.972983 ATCCACCGCTGCTGTCTACT 60.973 55.000 0.00 0.00 0.00 2.57
729 730 0.528684 GATCCACCGCTGCTGTCTAC 60.529 60.000 0.00 0.00 0.00 2.59
730 731 0.684479 AGATCCACCGCTGCTGTCTA 60.684 55.000 0.00 0.00 0.00 2.59
731 732 1.986757 AGATCCACCGCTGCTGTCT 60.987 57.895 0.00 0.00 0.00 3.41
733 734 2.267006 CAGATCCACCGCTGCTGT 59.733 61.111 0.00 0.00 0.00 4.40
734 735 2.513204 CCAGATCCACCGCTGCTG 60.513 66.667 0.00 0.00 0.00 4.41
735 736 3.790437 CCCAGATCCACCGCTGCT 61.790 66.667 0.00 0.00 0.00 4.24
736 737 2.615227 AATCCCAGATCCACCGCTGC 62.615 60.000 0.00 0.00 0.00 5.25
738 739 1.274703 ACAATCCCAGATCCACCGCT 61.275 55.000 0.00 0.00 0.00 5.52
739 740 0.394352 AACAATCCCAGATCCACCGC 60.394 55.000 0.00 0.00 0.00 5.68
740 741 1.745087 CAAACAATCCCAGATCCACCG 59.255 52.381 0.00 0.00 0.00 4.94
741 742 1.478105 GCAAACAATCCCAGATCCACC 59.522 52.381 0.00 0.00 0.00 4.61
742 743 1.133025 CGCAAACAATCCCAGATCCAC 59.867 52.381 0.00 0.00 0.00 4.02
743 744 1.271871 ACGCAAACAATCCCAGATCCA 60.272 47.619 0.00 0.00 0.00 3.41
744 745 1.133025 CACGCAAACAATCCCAGATCC 59.867 52.381 0.00 0.00 0.00 3.36
747 748 1.234821 GACACGCAAACAATCCCAGA 58.765 50.000 0.00 0.00 0.00 3.86
748 749 0.110238 CGACACGCAAACAATCCCAG 60.110 55.000 0.00 0.00 0.00 4.45
750 751 0.385473 CACGACACGCAAACAATCCC 60.385 55.000 0.00 0.00 0.00 3.85
751 752 0.385473 CCACGACACGCAAACAATCC 60.385 55.000 0.00 0.00 0.00 3.01
753 754 1.098712 ACCCACGACACGCAAACAAT 61.099 50.000 0.00 0.00 0.00 2.71
755 756 2.125065 ACCCACGACACGCAAACA 60.125 55.556 0.00 0.00 0.00 2.83
756 757 2.629763 GACCCACGACACGCAAAC 59.370 61.111 0.00 0.00 0.00 2.93
757 758 2.962786 CGACCCACGACACGCAAA 60.963 61.111 0.00 0.00 45.77 3.68
760 761 4.634133 TGACGACCCACGACACGC 62.634 66.667 0.00 0.00 45.77 5.34
761 762 2.428569 CTGACGACCCACGACACG 60.429 66.667 0.00 0.00 45.77 4.49
762 763 2.049433 CCTGACGACCCACGACAC 60.049 66.667 0.00 0.00 45.77 3.67
764 765 4.065281 CCCCTGACGACCCACGAC 62.065 72.222 0.00 0.00 45.77 4.34
780 781 5.544176 TGAAGTACCATCTGATATTCTCCCC 59.456 44.000 0.00 0.00 0.00 4.81
781 782 6.672266 TGAAGTACCATCTGATATTCTCCC 57.328 41.667 0.00 0.00 0.00 4.30
782 783 7.180051 AGGATGAAGTACCATCTGATATTCTCC 59.820 40.741 10.68 4.92 41.88 3.71
783 784 8.034215 CAGGATGAAGTACCATCTGATATTCTC 58.966 40.741 10.68 0.00 41.88 2.87
785 786 7.675062 ACAGGATGAAGTACCATCTGATATTC 58.325 38.462 10.68 0.00 41.88 1.75
786 787 7.623999 ACAGGATGAAGTACCATCTGATATT 57.376 36.000 10.68 0.00 41.88 1.28
788 789 7.298374 AGTACAGGATGAAGTACCATCTGATA 58.702 38.462 10.68 1.28 41.88 2.15
790 791 5.519808 AGTACAGGATGAAGTACCATCTGA 58.480 41.667 10.68 0.00 41.88 3.27
791 792 5.860941 AGTACAGGATGAAGTACCATCTG 57.139 43.478 10.68 9.47 41.88 2.90
793 794 7.584122 TTCTAGTACAGGATGAAGTACCATC 57.416 40.000 0.00 4.10 41.07 3.51
795 796 7.285629 CAGATTCTAGTACAGGATGAAGTACCA 59.714 40.741 0.00 0.00 41.07 3.25
796 797 7.285858 ACAGATTCTAGTACAGGATGAAGTACC 59.714 40.741 0.00 0.00 41.07 3.34
797 798 8.132362 CACAGATTCTAGTACAGGATGAAGTAC 58.868 40.741 0.00 0.00 39.69 2.73
799 800 6.406400 GCACAGATTCTAGTACAGGATGAAGT 60.406 42.308 0.00 0.00 39.69 3.01
800 801 5.982516 GCACAGATTCTAGTACAGGATGAAG 59.017 44.000 0.00 0.00 39.69 3.02
801 802 5.163405 GGCACAGATTCTAGTACAGGATGAA 60.163 44.000 0.00 0.00 39.69 2.57
804 805 3.319405 CGGCACAGATTCTAGTACAGGAT 59.681 47.826 0.00 0.00 0.00 3.24
806 807 2.427453 ACGGCACAGATTCTAGTACAGG 59.573 50.000 0.00 0.00 0.00 4.00
807 808 3.696898 GACGGCACAGATTCTAGTACAG 58.303 50.000 0.00 0.00 0.00 2.74
810 811 2.635714 TCGACGGCACAGATTCTAGTA 58.364 47.619 0.00 0.00 0.00 1.82
811 812 1.460504 TCGACGGCACAGATTCTAGT 58.539 50.000 0.00 0.00 0.00 2.57
812 813 2.783828 ATCGACGGCACAGATTCTAG 57.216 50.000 0.00 0.00 0.00 2.43
813 814 3.186909 CAAATCGACGGCACAGATTCTA 58.813 45.455 0.00 0.00 33.94 2.10
814 815 2.002586 CAAATCGACGGCACAGATTCT 58.997 47.619 0.00 0.00 33.94 2.40
815 816 1.732259 ACAAATCGACGGCACAGATTC 59.268 47.619 0.00 0.00 33.94 2.52
817 818 2.665649 TACAAATCGACGGCACAGAT 57.334 45.000 0.00 0.00 0.00 2.90
818 819 2.442212 TTACAAATCGACGGCACAGA 57.558 45.000 0.00 0.00 0.00 3.41
819 820 2.030457 GGATTACAAATCGACGGCACAG 59.970 50.000 0.00 0.00 0.00 3.66
821 822 2.004017 TGGATTACAAATCGACGGCAC 58.996 47.619 0.00 0.00 0.00 5.01
823 824 2.536130 CGTTGGATTACAAATCGACGGC 60.536 50.000 14.29 0.00 41.58 5.68
824 825 2.029970 CCGTTGGATTACAAATCGACGG 59.970 50.000 21.18 21.18 41.58 4.79
826 827 3.063045 GGACCGTTGGATTACAAATCGAC 59.937 47.826 0.00 0.00 41.58 4.20
827 828 3.264104 GGACCGTTGGATTACAAATCGA 58.736 45.455 0.00 0.00 41.58 3.59
828 829 3.004171 TGGACCGTTGGATTACAAATCG 58.996 45.455 0.00 0.00 41.58 3.34
831 832 3.773418 TCTGGACCGTTGGATTACAAA 57.227 42.857 0.00 0.00 41.58 2.83
832 833 3.992943 ATCTGGACCGTTGGATTACAA 57.007 42.857 0.00 0.00 36.54 2.41
834 835 4.138487 AGAATCTGGACCGTTGGATTAC 57.862 45.455 0.00 0.00 0.00 1.89
835 836 5.741964 GCATAGAATCTGGACCGTTGGATTA 60.742 44.000 0.00 0.00 0.00 1.75
836 837 4.708177 CATAGAATCTGGACCGTTGGATT 58.292 43.478 0.00 0.00 0.00 3.01
838 839 2.158957 GCATAGAATCTGGACCGTTGGA 60.159 50.000 0.00 0.00 0.00 3.53
839 840 2.158900 AGCATAGAATCTGGACCGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
842 843 3.567397 ACTAGCATAGAATCTGGACCGT 58.433 45.455 0.00 0.00 42.77 4.83
843 844 3.365465 CGACTAGCATAGAATCTGGACCG 60.365 52.174 0.00 0.00 42.77 4.79
844 845 3.612955 GCGACTAGCATAGAATCTGGACC 60.613 52.174 0.00 0.00 42.77 4.46
845 846 3.570559 GCGACTAGCATAGAATCTGGAC 58.429 50.000 0.00 0.00 42.77 4.02
859 860 1.334243 CTTACTTCCGGGAGCGACTAG 59.666 57.143 10.62 0.00 0.00 2.57
860 861 1.065199 TCTTACTTCCGGGAGCGACTA 60.065 52.381 10.62 0.00 0.00 2.59
861 862 0.323178 TCTTACTTCCGGGAGCGACT 60.323 55.000 10.62 0.00 0.00 4.18
862 863 0.100861 CTCTTACTTCCGGGAGCGAC 59.899 60.000 10.62 0.00 0.00 5.19
864 865 0.100861 GTCTCTTACTTCCGGGAGCG 59.899 60.000 10.62 0.00 0.00 5.03
866 867 1.751924 CTGGTCTCTTACTTCCGGGAG 59.248 57.143 8.71 8.71 0.00 4.30
867 868 1.356738 TCTGGTCTCTTACTTCCGGGA 59.643 52.381 0.00 0.00 0.00 5.14
868 869 1.477295 GTCTGGTCTCTTACTTCCGGG 59.523 57.143 0.00 0.00 0.00 5.73
869 870 1.477295 GGTCTGGTCTCTTACTTCCGG 59.523 57.143 0.00 0.00 0.00 5.14
870 871 1.132643 CGGTCTGGTCTCTTACTTCCG 59.867 57.143 0.00 0.00 0.00 4.30
871 872 1.477295 CCGGTCTGGTCTCTTACTTCC 59.523 57.143 0.00 0.00 0.00 3.46
873 874 2.169330 GTCCGGTCTGGTCTCTTACTT 58.831 52.381 0.00 0.00 39.52 2.24
874 875 1.836802 GTCCGGTCTGGTCTCTTACT 58.163 55.000 0.00 0.00 39.52 2.24
875 876 0.450983 CGTCCGGTCTGGTCTCTTAC 59.549 60.000 0.00 0.00 39.52 2.34
877 878 1.977544 CCGTCCGGTCTGGTCTCTT 60.978 63.158 0.00 0.00 39.52 2.85
878 879 2.361357 CCGTCCGGTCTGGTCTCT 60.361 66.667 0.00 0.00 39.52 3.10
880 881 2.116772 TTCCGTCCGGTCTGGTCT 59.883 61.111 0.00 0.00 39.52 3.85
881 882 2.260743 GTTCCGTCCGGTCTGGTC 59.739 66.667 0.00 0.00 39.52 4.02
884 885 2.261671 CAGGTTCCGTCCGGTCTG 59.738 66.667 0.00 8.46 36.47 3.51
885 886 2.995574 CCAGGTTCCGTCCGGTCT 60.996 66.667 0.00 0.00 36.47 3.85
886 887 2.776670 GAACCAGGTTCCGTCCGGTC 62.777 65.000 20.57 0.00 36.65 4.79
887 888 2.845795 AACCAGGTTCCGTCCGGT 60.846 61.111 0.00 0.00 36.50 5.28
888 889 2.047560 GAACCAGGTTCCGTCCGG 60.048 66.667 20.57 0.00 36.65 5.14
889 890 2.431942 CGAACCAGGTTCCGTCCG 60.432 66.667 24.33 10.95 39.14 4.79
890 891 2.726822 AAGCGAACCAGGTTCCGTCC 62.727 60.000 24.33 11.62 39.14 4.79
891 892 1.289800 GAAGCGAACCAGGTTCCGTC 61.290 60.000 24.33 19.28 41.31 4.79
892 893 1.301479 GAAGCGAACCAGGTTCCGT 60.301 57.895 24.33 15.66 41.31 4.69
893 894 1.291877 CTGAAGCGAACCAGGTTCCG 61.292 60.000 24.33 19.56 45.11 4.30
894 895 0.250338 ACTGAAGCGAACCAGGTTCC 60.250 55.000 24.33 17.20 45.11 3.62
911 912 1.134610 CCCCGGCGAAAATACTGTACT 60.135 52.381 9.30 0.00 0.00 2.73
964 966 4.504916 CTGGAGCACGAGCCTCCG 62.505 72.222 14.77 8.65 43.56 4.63
1033 1038 4.785453 CTCCAGCGGGTCCTTGCC 62.785 72.222 1.81 0.00 34.93 4.52
1176 4885 4.754667 GACGCCTGGAACCCCGTC 62.755 72.222 0.00 2.67 42.39 4.79
1212 4921 1.544246 ACCATCTGATTGACGACGTCA 59.456 47.619 26.04 26.04 41.09 4.35
1266 4990 1.211190 GAAAAGGCAAGCTCGCAGG 59.789 57.895 0.00 0.00 0.00 4.85
1278 5002 1.000274 CCCGTGCTCAAAAGGAAAAGG 60.000 52.381 0.00 0.00 0.00 3.11
1280 5004 2.060050 TCCCGTGCTCAAAAGGAAAA 57.940 45.000 0.00 0.00 0.00 2.29
1290 5014 2.100916 TCTGCTAACTAATCCCGTGCTC 59.899 50.000 0.00 0.00 0.00 4.26
1295 5019 4.341520 ACCTAGTTCTGCTAACTAATCCCG 59.658 45.833 11.67 2.88 32.89 5.14
1514 5263 9.420118 CTTCATCTATAGATTACCTCCAGCTAT 57.580 37.037 12.75 0.00 31.21 2.97
1533 5282 3.947612 ATGACAGGCATTCCTTCATCT 57.052 42.857 4.20 0.00 41.93 2.90
1586 5335 7.509141 AAAATCGGCAAAAATTCTGGAAAAT 57.491 28.000 0.00 0.00 0.00 1.82
1699 5459 0.534412 AGCTTCATCACAGTCCTCGG 59.466 55.000 0.00 0.00 0.00 4.63
1971 7080 5.708544 AGCATGGATTAGGAAATCAATGGA 58.291 37.500 14.37 0.00 47.00 3.41
2282 7413 5.114081 AGGGACATACCGAACGAAAATTAG 58.886 41.667 0.00 0.00 40.11 1.73
2356 7494 3.815396 GCAGTATAATGGGCCCATGACAT 60.815 47.826 38.06 29.19 36.68 3.06
2382 7520 6.074676 GCTAATTTATGCATCAAAAGCTTCCG 60.075 38.462 17.58 0.00 0.00 4.30
2724 7883 4.520492 TCTGAAAGAAAGGAAACTCATGGC 59.480 41.667 0.00 0.00 42.31 4.40
2907 8157 4.883585 TCACATTGTAGGAAATGCTGGATC 59.116 41.667 0.00 0.00 40.54 3.36
3001 8334 4.501229 GCAATCACTTTTGATGGTGTCCAA 60.501 41.667 0.00 0.00 42.00 3.53
3345 12006 1.140852 CTGTGACCCACCACTTCAGAA 59.859 52.381 0.00 0.00 37.89 3.02
3477 12142 8.743099 GTTCTTGAAAGTTAAGAATTTCAACCG 58.257 33.333 14.56 9.40 45.59 4.44
3515 12181 0.937304 GCACTTCGCAACTTCAGTCA 59.063 50.000 0.00 0.00 41.79 3.41
3528 12194 4.384846 TCGATTTTAACGAGTCAGCACTTC 59.615 41.667 0.00 0.00 34.85 3.01
3777 16383 1.032014 CACCAAGAATTATGGCCCCG 58.968 55.000 0.00 0.00 41.89 5.73
4073 16689 3.578282 ACAATTAGGGCCAGTTCTTTTGG 59.422 43.478 6.18 0.00 38.78 3.28
4076 16692 2.562738 GCACAATTAGGGCCAGTTCTTT 59.437 45.455 6.18 0.00 42.32 2.52
4077 16693 2.171003 GCACAATTAGGGCCAGTTCTT 58.829 47.619 6.18 0.00 42.32 2.52
4078 16694 1.839424 GCACAATTAGGGCCAGTTCT 58.161 50.000 6.18 0.00 42.32 3.01
4086 17052 1.064505 CATCGCACAGCACAATTAGGG 59.935 52.381 0.00 0.00 0.00 3.53
4088 17054 1.739466 ACCATCGCACAGCACAATTAG 59.261 47.619 0.00 0.00 0.00 1.73
4103 17069 9.467258 CACCAAATATGATGTATGAAAACCATC 57.533 33.333 0.00 0.00 36.71 3.51
4110 17076 9.796180 TGATGATCACCAAATATGATGTATGAA 57.204 29.630 0.00 0.00 36.92 2.57
4319 17290 2.239907 GTTATCCTCCAAAGAGCCCAGT 59.760 50.000 0.00 0.00 38.96 4.00
4374 17351 3.438087 ACATCGAGCAAAAGGAATCAGTG 59.562 43.478 0.00 0.00 0.00 3.66
4505 17522 3.438087 CCTCACCAGATACTTTGCTTGTG 59.562 47.826 0.00 0.00 0.00 3.33
4568 17586 3.088532 GTTGACCCAATGATGTAAGCCA 58.911 45.455 0.00 0.00 0.00 4.75
4620 17638 4.181578 CGTTTGTACTAGGGGTCAATCAG 58.818 47.826 0.00 0.00 0.00 2.90
4633 17651 4.094830 AGAATTTCCACCCGTTTGTACT 57.905 40.909 0.00 0.00 0.00 2.73
4777 17800 0.603975 GACTTGGTGAGGTGTGCTCC 60.604 60.000 0.00 0.00 0.00 4.70
4780 17803 0.663153 GTTGACTTGGTGAGGTGTGC 59.337 55.000 0.00 0.00 0.00 4.57
4784 17813 3.297134 ACAATGTTGACTTGGTGAGGT 57.703 42.857 0.00 0.00 0.00 3.85
4939 18352 1.360393 ACCTTGTTGGCCCCTCTTCA 61.360 55.000 0.00 0.00 40.22 3.02
4949 18411 3.423539 TCTCATTGAGGACCTTGTTGG 57.576 47.619 13.59 0.00 42.93 3.77
5224 18722 3.771577 AAATTTCCACGAGGTCTCACT 57.228 42.857 0.00 0.00 35.89 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.