Multiple sequence alignment - TraesCS5A01G379300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G379300 chr5A 100.000 4282 0 0 1 4282 576581737 576586018 0.000000e+00 7908.0
1 TraesCS5A01G379300 chr5B 91.716 2728 110 50 816 3460 562046390 562049084 0.000000e+00 3679.0
2 TraesCS5A01G379300 chr5B 86.027 823 57 30 14 793 562045598 562046405 0.000000e+00 830.0
3 TraesCS5A01G379300 chr5B 84.211 817 64 34 3459 4226 562049111 562049911 0.000000e+00 734.0
4 TraesCS5A01G379300 chr5B 87.874 635 37 7 1285 1904 530921491 530922100 0.000000e+00 710.0
5 TraesCS5A01G379300 chr5B 91.361 382 27 3 2888 3269 530922093 530922468 6.350000e-143 518.0
6 TraesCS5A01G379300 chr5B 88.462 78 5 2 4082 4155 562051182 562051259 1.640000e-14 91.6
7 TraesCS5A01G379300 chr5D 93.315 2498 100 23 824 3286 458630725 458633190 0.000000e+00 3626.0
8 TraesCS5A01G379300 chr5D 85.861 778 45 16 3290 4005 458633230 458634004 0.000000e+00 767.0
9 TraesCS5A01G379300 chr5D 85.825 388 33 7 14 381 458629608 458629993 4.010000e-105 392.0
10 TraesCS5A01G379300 chr5D 83.410 434 35 16 381 793 458630027 458630444 6.760000e-98 368.0
11 TraesCS5A01G379300 chr5D 86.957 115 10 3 4046 4155 458636398 458636512 1.620000e-24 124.0
12 TraesCS5A01G379300 chr2D 93.850 2195 80 15 1285 3460 601057674 601055516 0.000000e+00 3254.0
13 TraesCS5A01G379300 chr4A 92.346 2195 105 21 1285 3460 532160580 532162730 0.000000e+00 3064.0
14 TraesCS5A01G379300 chr7D 95.647 1769 66 6 1696 3460 332691734 332693495 0.000000e+00 2830.0
15 TraesCS5A01G379300 chr7D 81.763 329 20 17 1285 1598 332691061 332691364 5.530000e-59 239.0
16 TraesCS5A01G379300 chr2A 90.410 1366 74 15 1285 2635 461411843 461413166 0.000000e+00 1744.0
17 TraesCS5A01G379300 chr2A 91.909 618 44 2 2660 3277 461413372 461413983 0.000000e+00 859.0
18 TraesCS5A01G379300 chr1B 90.410 1366 74 15 1285 2635 520243734 520245057 0.000000e+00 1744.0
19 TraesCS5A01G379300 chr1B 91.586 618 46 2 2660 3277 520245263 520245874 0.000000e+00 848.0
20 TraesCS5A01G379300 chr1B 88.462 390 43 1 1501 1888 664616600 664616989 1.800000e-128 470.0
21 TraesCS5A01G379300 chr1A 90.190 1366 77 15 1285 2635 64843089 64844412 0.000000e+00 1727.0
22 TraesCS5A01G379300 chr1A 91.909 618 44 2 2660 3277 64844618 64845229 0.000000e+00 859.0
23 TraesCS5A01G379300 chr3B 88.900 1009 55 15 1285 2278 568297087 568296121 0.000000e+00 1190.0
24 TraesCS5A01G379300 chr1D 87.084 511 27 12 1285 1780 467357274 467357760 3.770000e-150 542.0
25 TraesCS5A01G379300 chr1D 87.084 511 27 6 1285 1780 476219177 476218691 3.770000e-150 542.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G379300 chr5A 576581737 576586018 4281 False 7908.00 7908 100.0000 1 4282 1 chr5A.!!$F1 4281
1 TraesCS5A01G379300 chr5B 562045598 562051259 5661 False 1333.65 3679 87.6040 14 4226 4 chr5B.!!$F2 4212
2 TraesCS5A01G379300 chr5B 530921491 530922468 977 False 614.00 710 89.6175 1285 3269 2 chr5B.!!$F1 1984
3 TraesCS5A01G379300 chr5D 458629608 458636512 6904 False 1055.40 3626 87.0736 14 4155 5 chr5D.!!$F1 4141
4 TraesCS5A01G379300 chr2D 601055516 601057674 2158 True 3254.00 3254 93.8500 1285 3460 1 chr2D.!!$R1 2175
5 TraesCS5A01G379300 chr4A 532160580 532162730 2150 False 3064.00 3064 92.3460 1285 3460 1 chr4A.!!$F1 2175
6 TraesCS5A01G379300 chr7D 332691061 332693495 2434 False 1534.50 2830 88.7050 1285 3460 2 chr7D.!!$F1 2175
7 TraesCS5A01G379300 chr2A 461411843 461413983 2140 False 1301.50 1744 91.1595 1285 3277 2 chr2A.!!$F1 1992
8 TraesCS5A01G379300 chr1B 520243734 520245874 2140 False 1296.00 1744 90.9980 1285 3277 2 chr1B.!!$F2 1992
9 TraesCS5A01G379300 chr1A 64843089 64845229 2140 False 1293.00 1727 91.0495 1285 3277 2 chr1A.!!$F1 1992
10 TraesCS5A01G379300 chr3B 568296121 568297087 966 True 1190.00 1190 88.9000 1285 2278 1 chr3B.!!$R1 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 1216 0.038159 GACACTGTCACCGGAAGAGG 60.038 60.0 9.46 4.37 32.09 3.69 F
1479 1920 0.032217 AAGCAGAGGAGGAGGAGGAG 60.032 60.0 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2620 0.394938 TCACCCGCTTGTACATGTGT 59.605 50.0 17.92 7.82 0.0 3.72 R
3292 4209 0.397535 ATGGGAGATTTGGCGCCAAT 60.398 50.0 40.32 28.94 35.7 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.931906 CGTGCTGATGCTGTAGACAT 58.068 50.000 0.00 0.00 40.48 3.06
92 94 7.468141 AAAAGGATAGCGGAAAAGAAAGAAT 57.532 32.000 0.00 0.00 0.00 2.40
128 130 2.360801 GGTGGAGAAGAGAGAAGATCCG 59.639 54.545 0.00 0.00 0.00 4.18
175 183 4.868172 TCAAACAATCCCATCTCCATCT 57.132 40.909 0.00 0.00 0.00 2.90
204 212 5.758924 ACCGAAAGCAAACAATTAGAGAAC 58.241 37.500 0.00 0.00 0.00 3.01
206 214 5.440685 CGAAAGCAAACAATTAGAGAACGT 58.559 37.500 0.00 0.00 0.00 3.99
207 215 5.336990 CGAAAGCAAACAATTAGAGAACGTG 59.663 40.000 0.00 0.00 0.00 4.49
209 217 4.385825 AGCAAACAATTAGAGAACGTGGA 58.614 39.130 0.00 0.00 0.00 4.02
241 262 1.148157 CGATGGTGACCACGATGAGC 61.148 60.000 6.40 0.00 35.80 4.26
341 368 0.379669 GAGCGTGCCCATCTCATTTG 59.620 55.000 0.00 0.00 0.00 2.32
348 375 0.749091 CCCATCTCATTTGCTCGGCA 60.749 55.000 0.00 0.00 36.47 5.69
355 382 0.597568 CATTTGCTCGGCACCTTTCA 59.402 50.000 0.00 0.00 38.71 2.69
361 388 1.238439 CTCGGCACCTTTCACATTGT 58.762 50.000 0.00 0.00 0.00 2.71
367 394 3.003897 GGCACCTTTCACATTGTACGAAA 59.996 43.478 0.00 0.00 0.00 3.46
438 503 5.418840 TCCAAAGCCTACCATCAATTCTTTC 59.581 40.000 0.00 0.00 0.00 2.62
441 506 7.381323 CAAAGCCTACCATCAATTCTTTCTTT 58.619 34.615 0.00 0.00 0.00 2.52
442 507 6.765915 AGCCTACCATCAATTCTTTCTTTC 57.234 37.500 0.00 0.00 0.00 2.62
444 509 5.418840 GCCTACCATCAATTCTTTCTTTCCA 59.581 40.000 0.00 0.00 0.00 3.53
445 510 6.071391 GCCTACCATCAATTCTTTCTTTCCAA 60.071 38.462 0.00 0.00 0.00 3.53
446 511 7.525360 GCCTACCATCAATTCTTTCTTTCCAAA 60.525 37.037 0.00 0.00 0.00 3.28
447 512 8.367156 CCTACCATCAATTCTTTCTTTCCAAAA 58.633 33.333 0.00 0.00 0.00 2.44
448 513 9.196552 CTACCATCAATTCTTTCTTTCCAAAAC 57.803 33.333 0.00 0.00 0.00 2.43
449 514 7.795047 ACCATCAATTCTTTCTTTCCAAAACT 58.205 30.769 0.00 0.00 0.00 2.66
450 515 8.267183 ACCATCAATTCTTTCTTTCCAAAACTT 58.733 29.630 0.00 0.00 0.00 2.66
451 516 9.112725 CCATCAATTCTTTCTTTCCAAAACTTT 57.887 29.630 0.00 0.00 0.00 2.66
525 590 0.039618 TTCCAGGCCAGGAATTCCAC 59.960 55.000 24.83 14.48 42.56 4.02
591 664 1.302832 GTGATCCGATCCCCATGCC 60.303 63.158 5.91 0.00 0.00 4.40
593 666 3.612247 GATCCGATCCCCATGCCGG 62.612 68.421 0.00 0.00 43.02 6.13
595 668 4.626081 CCGATCCCCATGCCGGTC 62.626 72.222 1.90 0.00 37.40 4.79
596 669 3.550431 CGATCCCCATGCCGGTCT 61.550 66.667 1.90 0.00 0.00 3.85
597 670 2.427753 GATCCCCATGCCGGTCTC 59.572 66.667 1.90 0.00 0.00 3.36
648 721 2.889045 AGTGGTTAGTTAGCTCACACGA 59.111 45.455 0.03 0.00 32.02 4.35
665 738 2.038164 CACGACTCATCCATCCATCCAT 59.962 50.000 0.00 0.00 0.00 3.41
667 740 2.566279 CGACTCATCCATCCATCCATCT 59.434 50.000 0.00 0.00 0.00 2.90
668 741 3.616802 CGACTCATCCATCCATCCATCTG 60.617 52.174 0.00 0.00 0.00 2.90
671 744 4.225492 ACTCATCCATCCATCCATCTGATC 59.775 45.833 0.00 0.00 0.00 2.92
672 745 4.436079 TCATCCATCCATCCATCTGATCT 58.564 43.478 0.00 0.00 0.00 2.75
678 751 5.374071 CATCCATCCATCTGATCTGAACAA 58.626 41.667 6.37 0.00 0.00 2.83
679 752 5.032327 TCCATCCATCTGATCTGAACAAG 57.968 43.478 6.37 0.00 0.00 3.16
680 753 4.472470 TCCATCCATCTGATCTGAACAAGT 59.528 41.667 6.37 0.00 0.00 3.16
681 754 4.575236 CCATCCATCTGATCTGAACAAGTG 59.425 45.833 6.37 0.26 0.00 3.16
682 755 4.212143 TCCATCTGATCTGAACAAGTGG 57.788 45.455 6.37 9.21 0.00 4.00
683 756 3.584406 TCCATCTGATCTGAACAAGTGGT 59.416 43.478 15.02 0.00 0.00 4.16
684 757 4.777366 TCCATCTGATCTGAACAAGTGGTA 59.223 41.667 15.02 4.31 0.00 3.25
685 758 5.248248 TCCATCTGATCTGAACAAGTGGTAA 59.752 40.000 15.02 0.13 0.00 2.85
686 759 6.070021 TCCATCTGATCTGAACAAGTGGTAAT 60.070 38.462 15.02 0.00 0.00 1.89
688 761 7.440556 CCATCTGATCTGAACAAGTGGTAATAG 59.559 40.741 6.37 0.00 0.00 1.73
689 762 6.878317 TCTGATCTGAACAAGTGGTAATAGG 58.122 40.000 0.00 0.00 0.00 2.57
702 775 9.125026 CAAGTGGTAATAGGAAGCAGAAAATAT 57.875 33.333 0.00 0.00 0.00 1.28
730 824 0.468226 TAAACTAGGAGGCGGCCATG 59.532 55.000 23.09 8.36 0.00 3.66
793 1175 0.320771 GCTGACACTGTCACCGGAAT 60.321 55.000 9.46 0.00 37.67 3.01
794 1176 1.714794 CTGACACTGTCACCGGAATC 58.285 55.000 9.46 0.00 37.67 2.52
795 1177 0.320374 TGACACTGTCACCGGAATCC 59.680 55.000 9.46 0.00 37.67 3.01
796 1178 0.391263 GACACTGTCACCGGAATCCC 60.391 60.000 9.46 0.00 32.09 3.85
797 1179 1.078426 CACTGTCACCGGAATCCCC 60.078 63.158 9.46 0.00 0.00 4.81
829 1211 2.702592 AAAAAGACACTGTCACCGGA 57.297 45.000 9.46 0.00 34.60 5.14
830 1212 2.702592 AAAAGACACTGTCACCGGAA 57.297 45.000 9.46 0.00 34.60 4.30
831 1213 2.240493 AAAGACACTGTCACCGGAAG 57.760 50.000 9.46 0.00 34.60 3.46
832 1214 1.410004 AAGACACTGTCACCGGAAGA 58.590 50.000 9.46 2.03 34.60 2.87
833 1215 0.962489 AGACACTGTCACCGGAAGAG 59.038 55.000 9.46 6.31 34.60 2.85
834 1216 0.038159 GACACTGTCACCGGAAGAGG 60.038 60.000 9.46 4.37 32.09 3.69
835 1217 1.293498 CACTGTCACCGGAAGAGGG 59.707 63.158 9.46 0.08 35.02 4.30
836 1218 1.155390 ACTGTCACCGGAAGAGGGA 59.845 57.895 9.46 0.00 35.02 4.20
837 1219 0.252284 ACTGTCACCGGAAGAGGGAT 60.252 55.000 9.46 0.00 35.02 3.85
838 1220 0.176680 CTGTCACCGGAAGAGGGATG 59.823 60.000 9.46 0.00 35.02 3.51
839 1221 1.153349 GTCACCGGAAGAGGGATGC 60.153 63.158 9.46 0.00 35.02 3.91
840 1222 1.306141 TCACCGGAAGAGGGATGCT 60.306 57.895 9.46 0.00 35.02 3.79
841 1223 1.153289 CACCGGAAGAGGGATGCTG 60.153 63.158 9.46 0.00 35.02 4.41
842 1224 1.306141 ACCGGAAGAGGGATGCTGA 60.306 57.895 9.46 0.00 35.02 4.26
843 1225 0.909610 ACCGGAAGAGGGATGCTGAA 60.910 55.000 9.46 0.00 35.02 3.02
869 1251 1.071228 CCTAAATACGCCTACCCACCC 59.929 57.143 0.00 0.00 0.00 4.61
870 1252 2.044758 CTAAATACGCCTACCCACCCT 58.955 52.381 0.00 0.00 0.00 4.34
872 1254 1.397390 AATACGCCTACCCACCCTCG 61.397 60.000 0.00 0.00 0.00 4.63
877 1259 3.470888 CTACCCACCCTCGGCCAG 61.471 72.222 2.24 0.00 0.00 4.85
961 1354 2.842394 AATCACAGCTCGGGACAGCG 62.842 60.000 0.00 0.00 44.82 5.18
962 1355 4.056125 CACAGCTCGGGACAGCGA 62.056 66.667 0.00 0.00 44.82 4.93
963 1356 4.057428 ACAGCTCGGGACAGCGAC 62.057 66.667 0.00 0.00 44.82 5.19
1015 1408 2.158959 GCCATGTCGTCTTCGTCCG 61.159 63.158 0.00 0.00 38.33 4.79
1016 1409 2.158959 CCATGTCGTCTTCGTCCGC 61.159 63.158 0.00 0.00 38.33 5.54
1258 1657 2.495155 CACAAGGTGGGTGATGATGA 57.505 50.000 0.00 0.00 38.54 2.92
1265 1664 3.267812 AGGTGGGTGATGATGATCTTTGT 59.732 43.478 0.00 0.00 0.00 2.83
1277 1676 2.548057 TGATCTTTGTTTCCTCGTGTGC 59.452 45.455 0.00 0.00 0.00 4.57
1279 1678 1.021202 CTTTGTTTCCTCGTGTGCCA 58.979 50.000 0.00 0.00 0.00 4.92
1281 1680 1.234821 TTGTTTCCTCGTGTGCCATC 58.765 50.000 0.00 0.00 0.00 3.51
1283 1682 1.202758 TGTTTCCTCGTGTGCCATCTT 60.203 47.619 0.00 0.00 0.00 2.40
1320 1719 2.027192 TCCGCTGAGAGGCTAATGTTTT 60.027 45.455 0.00 0.00 0.00 2.43
1479 1920 0.032217 AAGCAGAGGAGGAGGAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
1480 1921 1.457455 GCAGAGGAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
1481 1922 1.943730 GCAGAGGAGGAGGAGGAGGA 61.944 65.000 0.00 0.00 0.00 3.71
1482 1923 0.185901 CAGAGGAGGAGGAGGAGGAG 59.814 65.000 0.00 0.00 0.00 3.69
1483 1924 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
1484 1925 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1485 1926 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1486 1927 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1487 1928 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1494 1935 0.330431 AGGAGGAGGAGGAGGAGGAT 60.330 60.000 0.00 0.00 0.00 3.24
1594 2035 3.706373 GGCCAGGCACCTTCGAGA 61.706 66.667 15.19 0.00 0.00 4.04
1596 2037 2.266055 CCAGGCACCTTCGAGACC 59.734 66.667 0.00 0.00 0.00 3.85
1697 2409 0.820871 GAGATGACGGAGGAGCACTT 59.179 55.000 0.00 0.00 0.00 3.16
1894 2606 3.691342 CCTGGTTCGGCGACCTGA 61.691 66.667 25.17 6.03 40.06 3.86
2124 2836 4.410400 CCCACGGACAAGGGCTCC 62.410 72.222 0.00 0.00 38.44 4.70
2256 2968 2.224159 ACAGGCAACGGTGGAGGAT 61.224 57.895 0.90 0.00 45.90 3.24
2316 3028 2.050714 GACGTGGACTGCGTCGAA 60.051 61.111 0.00 0.00 46.85 3.71
2475 3187 0.977395 AGCTGGTGGACAACTACCTC 59.023 55.000 0.00 0.00 45.93 3.85
2948 3846 2.374830 ATCCGAATCCTCAGCCGCAG 62.375 60.000 0.00 0.00 0.00 5.18
2949 3847 3.267860 CGAATCCTCAGCCGCAGC 61.268 66.667 0.00 0.00 40.32 5.25
2950 3848 3.267860 GAATCCTCAGCCGCAGCG 61.268 66.667 8.18 8.18 46.67 5.18
3126 4040 3.001902 AAGAAGATCGACGGCCGCA 62.002 57.895 28.58 10.27 38.37 5.69
3286 4203 1.526887 GGATGAGCCCATGACCGAA 59.473 57.895 0.00 0.00 32.09 4.30
3288 4205 0.815615 GATGAGCCCATGACCGAACC 60.816 60.000 0.00 0.00 32.09 3.62
3290 4207 1.224592 GAGCCCATGACCGAACCAT 59.775 57.895 0.00 0.00 0.00 3.55
3291 4208 1.077501 AGCCCATGACCGAACCATG 60.078 57.895 0.00 0.00 40.66 3.66
3292 4209 1.077787 GCCCATGACCGAACCATGA 60.078 57.895 11.44 0.00 42.89 3.07
3293 4210 0.466189 GCCCATGACCGAACCATGAT 60.466 55.000 11.44 0.00 42.89 2.45
3471 4481 0.738762 CATCTCGTGACCACTGCCAG 60.739 60.000 0.00 0.00 0.00 4.85
3497 4507 3.368571 GCAGCAGCAACAGGGGTC 61.369 66.667 0.00 0.00 41.58 4.46
3508 4518 2.040544 CAGGGGTCGTTCATGTGCC 61.041 63.158 0.00 0.00 0.00 5.01
3540 4550 2.093306 TATGCTTAGCTTGTGTGCGT 57.907 45.000 5.60 0.00 38.13 5.24
3566 4576 2.505650 TATGGCCTTTGCAGCTTGTA 57.494 45.000 3.32 0.00 40.13 2.41
3637 4647 2.911484 CCTTCTGTCTTGGCTGGTATC 58.089 52.381 0.00 0.00 0.00 2.24
3687 4703 0.236187 TACATGCCGTGTTGTTTCGC 59.764 50.000 0.00 0.00 42.29 4.70
3700 4716 2.892334 TTTCGCAAGCCTCGCACAC 61.892 57.895 0.00 0.00 37.18 3.82
3704 4720 3.044059 GCAAGCCTCGCACACCATC 62.044 63.158 0.00 0.00 0.00 3.51
3720 4736 2.505819 ACCATCGCCTACAGGAAGAATT 59.494 45.455 0.00 0.00 37.39 2.17
3778 4806 4.525912 AGTTGAATGTCCATCTTTTGCC 57.474 40.909 0.00 0.00 0.00 4.52
3779 4807 4.154942 AGTTGAATGTCCATCTTTTGCCT 58.845 39.130 0.00 0.00 0.00 4.75
3798 4837 4.755123 TGCCTAGCTCACTTTGTTTTCTAC 59.245 41.667 0.00 0.00 0.00 2.59
3808 4847 5.008316 CACTTTGTTTTCTACCGTAAAGGCT 59.992 40.000 0.00 0.00 46.52 4.58
3837 4876 3.165058 TGCATAGAAAGTAGGCACTCG 57.835 47.619 0.00 0.00 41.75 4.18
3860 4905 1.741706 CATGCCTCTGCCTACAAAGTG 59.258 52.381 0.00 0.00 36.33 3.16
3877 4922 6.223120 ACAAAGTGGAAACCATTTTCTATGC 58.777 36.000 8.00 0.00 40.59 3.14
3917 4970 4.698583 ATCCGACACTCTTGTACTGTAC 57.301 45.455 10.98 10.98 35.47 2.90
3936 4989 3.185246 ACATAGCTAGACACCACATGC 57.815 47.619 0.00 0.00 0.00 4.06
3988 5041 0.247460 TCACATCTCGAGTGCCCTTG 59.753 55.000 13.13 4.97 36.93 3.61
3989 5042 0.742281 CACATCTCGAGTGCCCTTGG 60.742 60.000 13.13 0.00 0.00 3.61
4006 5059 6.959639 CCCTTGGCATACTGTATGTTTATT 57.040 37.500 24.32 0.00 38.43 1.40
4007 5060 6.970484 CCCTTGGCATACTGTATGTTTATTC 58.030 40.000 24.32 10.02 38.43 1.75
4008 5061 6.545666 CCCTTGGCATACTGTATGTTTATTCA 59.454 38.462 24.32 12.85 38.43 2.57
4009 5062 7.255242 CCCTTGGCATACTGTATGTTTATTCAG 60.255 40.741 24.32 12.89 38.43 3.02
4011 5064 8.574251 TTGGCATACTGTATGTTTATTCAGTT 57.426 30.769 24.32 0.00 40.64 3.16
4012 5065 8.574251 TGGCATACTGTATGTTTATTCAGTTT 57.426 30.769 24.32 0.00 40.64 2.66
4013 5066 8.458052 TGGCATACTGTATGTTTATTCAGTTTG 58.542 33.333 24.32 8.31 40.64 2.93
4014 5067 8.458843 GGCATACTGTATGTTTATTCAGTTTGT 58.541 33.333 24.32 0.00 40.64 2.83
4015 5068 9.277565 GCATACTGTATGTTTATTCAGTTTGTG 57.722 33.333 24.32 0.27 40.64 3.33
4016 5069 9.277565 CATACTGTATGTTTATTCAGTTTGTGC 57.722 33.333 17.63 0.00 40.64 4.57
4017 5070 7.510549 ACTGTATGTTTATTCAGTTTGTGCT 57.489 32.000 0.00 0.00 40.64 4.40
4018 5071 8.615878 ACTGTATGTTTATTCAGTTTGTGCTA 57.384 30.769 0.00 0.00 40.64 3.49
4019 5072 9.231297 ACTGTATGTTTATTCAGTTTGTGCTAT 57.769 29.630 0.00 0.00 40.64 2.97
4020 5073 9.494479 CTGTATGTTTATTCAGTTTGTGCTATG 57.506 33.333 0.00 0.00 29.87 2.23
4021 5074 9.008965 TGTATGTTTATTCAGTTTGTGCTATGT 57.991 29.630 0.00 0.00 0.00 2.29
4023 5076 6.676950 TGTTTATTCAGTTTGTGCTATGTGG 58.323 36.000 0.00 0.00 0.00 4.17
4024 5077 3.855689 ATTCAGTTTGTGCTATGTGGC 57.144 42.857 0.00 0.00 0.00 5.01
4035 5093 1.955080 GCTATGTGGCGTAGTACTCCT 59.045 52.381 10.58 0.00 0.00 3.69
4055 5186 0.388006 AATTAGTTTTGCACCGGCGC 60.388 50.000 7.72 7.72 45.35 6.53
4085 5216 2.344025 CTTTAGCGAACACCCCTGTAC 58.656 52.381 0.00 0.00 0.00 2.90
4115 5247 7.972832 TGTTAACATACAGGTTGACCTTTAG 57.027 36.000 3.59 0.00 46.09 1.85
4122 5254 2.489329 CAGGTTGACCTTTAGTGGCATG 59.511 50.000 0.00 0.00 46.09 4.06
4155 5288 3.884693 TCATTGCTGTCACAAGTTCACAT 59.115 39.130 0.00 0.00 31.96 3.21
4175 5309 2.788030 TCGTCCGTTTCAAGCAAAAAC 58.212 42.857 0.00 0.00 34.09 2.43
4204 5397 2.600470 AACACACCCAGCACAAATTG 57.400 45.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.621629 TTCTTTTCCGCTATCCTTTTATTCATA 57.378 29.630 0.00 0.00 0.00 2.15
92 94 3.843619 TCTCCACCACTAATCACCATTCA 59.156 43.478 0.00 0.00 0.00 2.57
128 130 4.770874 TCCGCTTTACCGCTGGCC 62.771 66.667 0.00 0.00 0.00 5.36
175 183 2.203224 TTTGCTTTCGGTCGGCCA 60.203 55.556 6.96 0.00 34.09 5.36
241 262 1.478510 AGACATCTTCTGCGGTAGGTG 59.521 52.381 10.64 10.64 31.12 4.00
283 304 2.817424 TGGCACGCCAATTTGCAA 59.183 50.000 8.67 0.00 44.12 4.08
293 320 1.732683 CGGTTGGATTTTGGCACGC 60.733 57.895 0.00 0.00 0.00 5.34
320 347 0.179062 AATGAGATGGGCACGCTCTC 60.179 55.000 10.61 10.61 36.72 3.20
329 356 0.749091 TGCCGAGCAAATGAGATGGG 60.749 55.000 0.00 0.00 34.76 4.00
341 368 0.109597 CAATGTGAAAGGTGCCGAGC 60.110 55.000 0.00 0.00 0.00 5.03
372 399 2.224137 GCAAAAGCAAAGGCCTTTCTCT 60.224 45.455 28.16 22.80 42.56 3.10
373 400 2.138320 GCAAAAGCAAAGGCCTTTCTC 58.862 47.619 28.16 21.01 42.56 2.87
375 402 1.229428 GGCAAAAGCAAAGGCCTTTC 58.771 50.000 28.16 20.83 43.09 2.62
457 522 5.603813 ACCCACTTTGTTGGTCTAGTAGTAA 59.396 40.000 0.00 0.00 34.44 2.24
458 523 5.011329 CACCCACTTTGTTGGTCTAGTAGTA 59.989 44.000 0.00 0.00 34.44 1.82
460 525 4.315803 CACCCACTTTGTTGGTCTAGTAG 58.684 47.826 0.00 0.00 34.44 2.57
461 526 3.071892 CCACCCACTTTGTTGGTCTAGTA 59.928 47.826 0.00 0.00 34.44 1.82
462 527 2.158667 CCACCCACTTTGTTGGTCTAGT 60.159 50.000 0.00 0.00 34.44 2.57
463 528 2.158667 ACCACCCACTTTGTTGGTCTAG 60.159 50.000 0.00 0.00 34.44 2.43
464 529 1.847737 ACCACCCACTTTGTTGGTCTA 59.152 47.619 0.00 0.00 34.44 2.59
465 530 0.629058 ACCACCCACTTTGTTGGTCT 59.371 50.000 0.00 0.00 34.44 3.85
466 531 1.029681 GACCACCCACTTTGTTGGTC 58.970 55.000 3.95 3.95 38.93 4.02
467 532 0.629058 AGACCACCCACTTTGTTGGT 59.371 50.000 0.00 0.00 34.44 3.67
468 533 1.032014 CAGACCACCCACTTTGTTGG 58.968 55.000 0.00 0.00 36.26 3.77
648 721 3.595021 TCAGATGGATGGATGGATGAGT 58.405 45.455 0.00 0.00 0.00 3.41
665 738 6.667848 TCCTATTACCACTTGTTCAGATCAGA 59.332 38.462 0.00 0.00 0.00 3.27
667 740 6.867519 TCCTATTACCACTTGTTCAGATCA 57.132 37.500 0.00 0.00 0.00 2.92
668 741 6.258947 GCTTCCTATTACCACTTGTTCAGATC 59.741 42.308 0.00 0.00 0.00 2.75
671 744 5.245531 TGCTTCCTATTACCACTTGTTCAG 58.754 41.667 0.00 0.00 0.00 3.02
672 745 5.012664 TCTGCTTCCTATTACCACTTGTTCA 59.987 40.000 0.00 0.00 0.00 3.18
702 775 5.452356 GCCGCCTCCTAGTTTATTACAGTAA 60.452 44.000 0.00 0.00 0.00 2.24
705 778 3.391049 GCCGCCTCCTAGTTTATTACAG 58.609 50.000 0.00 0.00 0.00 2.74
706 779 2.103601 GGCCGCCTCCTAGTTTATTACA 59.896 50.000 0.71 0.00 0.00 2.41
708 781 2.400573 TGGCCGCCTCCTAGTTTATTA 58.599 47.619 11.61 0.00 0.00 0.98
709 782 1.209621 TGGCCGCCTCCTAGTTTATT 58.790 50.000 11.61 0.00 0.00 1.40
711 784 0.468226 CATGGCCGCCTCCTAGTTTA 59.532 55.000 11.61 0.00 0.00 2.01
712 785 1.224592 CATGGCCGCCTCCTAGTTT 59.775 57.895 11.61 0.00 0.00 2.66
714 787 3.164269 CCATGGCCGCCTCCTAGT 61.164 66.667 11.61 0.00 0.00 2.57
715 788 4.632974 GCCATGGCCGCCTCCTAG 62.633 72.222 27.24 0.00 34.56 3.02
730 824 1.106285 GGTGACATGGATGGAAAGCC 58.894 55.000 0.00 0.00 0.00 4.35
742 836 1.408266 GGGAGTTATTGCCGGTGACAT 60.408 52.381 1.90 0.00 0.00 3.06
810 1192 2.702592 TCCGGTGACAGTGTCTTTTT 57.297 45.000 23.29 0.00 33.15 1.94
811 1193 2.169769 TCTTCCGGTGACAGTGTCTTTT 59.830 45.455 23.29 0.00 33.15 2.27
812 1194 1.760613 TCTTCCGGTGACAGTGTCTTT 59.239 47.619 23.29 0.00 33.15 2.52
813 1195 1.341531 CTCTTCCGGTGACAGTGTCTT 59.658 52.381 23.29 0.00 33.15 3.01
814 1196 0.962489 CTCTTCCGGTGACAGTGTCT 59.038 55.000 23.29 0.00 33.15 3.41
815 1197 0.038159 CCTCTTCCGGTGACAGTGTC 60.038 60.000 16.68 16.68 0.00 3.67
816 1198 1.472662 CCCTCTTCCGGTGACAGTGT 61.473 60.000 0.00 0.00 0.00 3.55
817 1199 1.185618 TCCCTCTTCCGGTGACAGTG 61.186 60.000 0.00 0.00 0.00 3.66
818 1200 0.252284 ATCCCTCTTCCGGTGACAGT 60.252 55.000 0.00 0.00 0.00 3.55
819 1201 0.176680 CATCCCTCTTCCGGTGACAG 59.823 60.000 0.00 0.00 0.00 3.51
820 1202 1.899437 GCATCCCTCTTCCGGTGACA 61.899 60.000 0.00 0.00 0.00 3.58
821 1203 1.153349 GCATCCCTCTTCCGGTGAC 60.153 63.158 0.00 0.00 0.00 3.67
822 1204 1.306141 AGCATCCCTCTTCCGGTGA 60.306 57.895 0.00 0.00 0.00 4.02
823 1205 1.153289 CAGCATCCCTCTTCCGGTG 60.153 63.158 0.00 0.00 0.00 4.94
824 1206 0.909610 TTCAGCATCCCTCTTCCGGT 60.910 55.000 0.00 0.00 0.00 5.28
825 1207 0.179062 CTTCAGCATCCCTCTTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
826 1208 0.813210 GCTTCAGCATCCCTCTTCCG 60.813 60.000 0.00 0.00 41.59 4.30
827 1209 0.465278 GGCTTCAGCATCCCTCTTCC 60.465 60.000 0.30 0.00 44.36 3.46
828 1210 0.545646 AGGCTTCAGCATCCCTCTTC 59.454 55.000 0.30 0.00 44.36 2.87
829 1211 0.998145 AAGGCTTCAGCATCCCTCTT 59.002 50.000 0.30 0.00 44.36 2.85
830 1212 0.545646 GAAGGCTTCAGCATCCCTCT 59.454 55.000 21.99 0.00 44.36 3.69
831 1213 0.465278 GGAAGGCTTCAGCATCCCTC 60.465 60.000 27.17 4.23 44.36 4.30
832 1214 0.918310 AGGAAGGCTTCAGCATCCCT 60.918 55.000 27.17 12.15 44.64 4.20
833 1215 0.839946 TAGGAAGGCTTCAGCATCCC 59.160 55.000 27.17 9.98 44.64 3.85
834 1216 2.717639 TTAGGAAGGCTTCAGCATCC 57.282 50.000 27.17 10.95 44.19 3.51
835 1217 4.212214 CGTATTTAGGAAGGCTTCAGCATC 59.788 45.833 27.17 10.59 44.36 3.91
836 1218 4.130118 CGTATTTAGGAAGGCTTCAGCAT 58.870 43.478 27.17 15.35 44.36 3.79
837 1219 3.531538 CGTATTTAGGAAGGCTTCAGCA 58.468 45.455 27.17 9.76 44.36 4.41
838 1220 2.288186 GCGTATTTAGGAAGGCTTCAGC 59.712 50.000 27.17 12.02 41.14 4.26
839 1221 2.872858 GGCGTATTTAGGAAGGCTTCAG 59.127 50.000 27.17 9.46 0.00 3.02
840 1222 2.504175 AGGCGTATTTAGGAAGGCTTCA 59.496 45.455 27.17 8.48 33.87 3.02
841 1223 3.195471 AGGCGTATTTAGGAAGGCTTC 57.805 47.619 18.98 18.98 33.87 3.86
842 1224 3.181457 GGTAGGCGTATTTAGGAAGGCTT 60.181 47.826 0.00 0.00 38.64 4.35
843 1225 2.367894 GGTAGGCGTATTTAGGAAGGCT 59.632 50.000 0.00 0.00 40.78 4.58
873 1255 1.523758 CCGTATAATTGAGGCCTGGC 58.476 55.000 12.00 11.05 0.00 4.85
875 1257 1.697432 TCCCCGTATAATTGAGGCCTG 59.303 52.381 12.00 0.00 0.00 4.85
876 1258 1.978580 CTCCCCGTATAATTGAGGCCT 59.021 52.381 3.86 3.86 0.00 5.19
877 1259 1.003233 CCTCCCCGTATAATTGAGGCC 59.997 57.143 0.00 0.00 36.50 5.19
878 1260 2.474410 CCTCCCCGTATAATTGAGGC 57.526 55.000 0.00 0.00 36.50 4.70
903 1296 2.802816 CGCATTTACATACCCTCAGAGC 59.197 50.000 0.00 0.00 0.00 4.09
907 1300 2.482316 CGACCGCATTTACATACCCTCA 60.482 50.000 0.00 0.00 0.00 3.86
961 1354 2.781158 GCTGCTCCTCCTCCTCGTC 61.781 68.421 0.00 0.00 0.00 4.20
962 1355 2.757917 GCTGCTCCTCCTCCTCGT 60.758 66.667 0.00 0.00 0.00 4.18
963 1356 2.757508 TGCTGCTCCTCCTCCTCG 60.758 66.667 0.00 0.00 0.00 4.63
964 1357 3.092780 GCTGCTGCTCCTCCTCCTC 62.093 68.421 8.53 0.00 36.03 3.71
965 1358 3.082701 GCTGCTGCTCCTCCTCCT 61.083 66.667 8.53 0.00 36.03 3.69
1251 1650 5.352569 ACACGAGGAAACAAAGATCATCATC 59.647 40.000 0.00 0.00 0.00 2.92
1252 1651 5.122869 CACACGAGGAAACAAAGATCATCAT 59.877 40.000 0.00 0.00 0.00 2.45
1254 1653 4.670221 GCACACGAGGAAACAAAGATCATC 60.670 45.833 0.00 0.00 0.00 2.92
1255 1654 3.189287 GCACACGAGGAAACAAAGATCAT 59.811 43.478 0.00 0.00 0.00 2.45
1257 1656 2.095718 GGCACACGAGGAAACAAAGATC 60.096 50.000 0.00 0.00 0.00 2.75
1258 1657 1.880027 GGCACACGAGGAAACAAAGAT 59.120 47.619 0.00 0.00 0.00 2.40
1277 1676 1.428448 TTCGTCGAGCACAAAGATGG 58.572 50.000 0.00 0.00 0.00 3.51
1279 1678 3.125316 GGAATTTCGTCGAGCACAAAGAT 59.875 43.478 0.00 0.00 0.00 2.40
1281 1680 2.721797 CGGAATTTCGTCGAGCACAAAG 60.722 50.000 0.00 0.00 0.00 2.77
1283 1682 0.787787 CGGAATTTCGTCGAGCACAA 59.212 50.000 0.00 0.00 0.00 3.33
1479 1920 0.825840 CGTCATCCTCCTCCTCCTCC 60.826 65.000 0.00 0.00 0.00 4.30
1480 1921 0.825840 CCGTCATCCTCCTCCTCCTC 60.826 65.000 0.00 0.00 0.00 3.71
1481 1922 1.231641 CCGTCATCCTCCTCCTCCT 59.768 63.158 0.00 0.00 0.00 3.69
1482 1923 1.834822 CCCGTCATCCTCCTCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
1483 1924 1.834822 CCCCGTCATCCTCCTCCTC 60.835 68.421 0.00 0.00 0.00 3.71
1484 1925 2.283809 CCCCGTCATCCTCCTCCT 59.716 66.667 0.00 0.00 0.00 3.69
1485 1926 2.134933 GTCCCCGTCATCCTCCTCC 61.135 68.421 0.00 0.00 0.00 4.30
1486 1927 2.491022 CGTCCCCGTCATCCTCCTC 61.491 68.421 0.00 0.00 0.00 3.71
1487 1928 2.442272 CGTCCCCGTCATCCTCCT 60.442 66.667 0.00 0.00 0.00 3.69
1510 1951 2.599645 ATCCTAACCTGCTGCGGCTG 62.600 60.000 20.27 18.48 39.59 4.85
1514 1955 0.107456 ATCCATCCTAACCTGCTGCG 59.893 55.000 0.00 0.00 0.00 5.18
1594 2035 1.812686 TAGCAGAACTTGGTCGCGGT 61.813 55.000 6.13 0.00 38.70 5.68
1596 2037 1.674611 CGTAGCAGAACTTGGTCGCG 61.675 60.000 0.00 0.00 38.70 5.87
1697 2409 3.691342 CGGCCAGGTTGTCCTCGA 61.691 66.667 2.24 0.00 43.07 4.04
1908 2620 0.394938 TCACCCGCTTGTACATGTGT 59.605 50.000 17.92 7.82 0.00 3.72
1965 2677 3.583380 AGGCAGCCCTCCAAAGCA 61.583 61.111 8.22 0.00 36.46 3.91
2316 3028 3.168528 AAGTGCCTGACCACCCGT 61.169 61.111 0.00 0.00 36.38 5.28
3071 3985 2.730524 GGAGCACTCCCTCTCCAGC 61.731 68.421 5.30 0.00 46.24 4.85
3288 4205 1.269413 GGAGATTTGGCGCCAATCATG 60.269 52.381 40.32 0.00 35.70 3.07
3290 4207 1.037030 GGGAGATTTGGCGCCAATCA 61.037 55.000 40.32 28.09 35.70 2.57
3291 4208 1.037030 TGGGAGATTTGGCGCCAATC 61.037 55.000 40.32 33.53 35.70 2.67
3292 4209 0.397535 ATGGGAGATTTGGCGCCAAT 60.398 50.000 40.32 28.94 35.70 3.16
3293 4210 1.000233 ATGGGAGATTTGGCGCCAA 60.000 52.632 37.30 37.30 0.00 4.52
3497 4507 1.221466 ACAGACACGGCACATGAACG 61.221 55.000 0.00 3.13 0.00 3.95
3508 4518 3.664486 GCTAAGCATATCGTACAGACACG 59.336 47.826 0.00 0.00 43.28 4.49
3540 4550 2.094078 GCTGCAAAGGCCATAATCACAA 60.094 45.455 5.01 0.00 40.13 3.33
3566 4576 3.013921 CCGTATAAACTGCCACCACATT 58.986 45.455 0.00 0.00 0.00 2.71
3648 4658 7.170658 GCATGTACTCCTCAATTCTAACATCTC 59.829 40.741 0.00 0.00 0.00 2.75
3651 4661 6.058183 GGCATGTACTCCTCAATTCTAACAT 58.942 40.000 0.00 0.00 0.00 2.71
3687 4703 2.743752 CGATGGTGTGCGAGGCTTG 61.744 63.158 0.00 0.00 0.00 4.01
3700 4716 2.918712 ATTCTTCCTGTAGGCGATGG 57.081 50.000 0.00 0.00 34.44 3.51
3704 4720 4.866682 GAAGAAATTCTTCCTGTAGGCG 57.133 45.455 21.66 0.00 45.34 5.52
3720 4736 2.965831 ACAGACAGCAGTACCTGAAGAA 59.034 45.455 6.18 0.00 36.67 2.52
3778 4806 4.989168 ACGGTAGAAAACAAAGTGAGCTAG 59.011 41.667 0.00 0.00 0.00 3.42
3779 4807 4.952460 ACGGTAGAAAACAAAGTGAGCTA 58.048 39.130 0.00 0.00 0.00 3.32
3798 4837 0.457035 AATGCATGCAGCCTTTACGG 59.543 50.000 26.69 0.00 44.83 4.02
3820 4859 3.024547 TGCTCGAGTGCCTACTTTCTAT 58.975 45.455 15.13 0.00 37.25 1.98
3837 4876 0.107508 TTGTAGGCAGAGGCATGCTC 60.108 55.000 18.92 12.89 45.75 4.26
3860 4905 8.000780 ACAATAGAGCATAGAAAATGGTTTCC 57.999 34.615 0.00 0.00 43.65 3.13
3877 4922 5.354513 TCGGATAGGCGAGAATACAATAGAG 59.645 44.000 0.00 0.00 0.00 2.43
3917 4970 3.129109 CTGCATGTGGTGTCTAGCTATG 58.871 50.000 0.00 0.00 0.00 2.23
3957 5010 5.134202 TCGAGATGTGAAGAAAAGCTACA 57.866 39.130 0.00 0.00 0.00 2.74
3988 5041 8.458843 ACAAACTGAATAAACATACAGTATGCC 58.541 33.333 18.99 4.26 42.53 4.40
3989 5042 9.277565 CACAAACTGAATAAACATACAGTATGC 57.722 33.333 18.99 3.98 42.53 3.14
3990 5043 9.277565 GCACAAACTGAATAAACATACAGTATG 57.722 33.333 17.70 17.70 41.73 2.39
3994 5047 9.494479 CATAGCACAAACTGAATAAACATACAG 57.506 33.333 0.00 0.00 36.58 2.74
3995 5048 9.008965 ACATAGCACAAACTGAATAAACATACA 57.991 29.630 0.00 0.00 0.00 2.29
3997 5050 8.458052 CCACATAGCACAAACTGAATAAACATA 58.542 33.333 0.00 0.00 0.00 2.29
3998 5051 7.315142 CCACATAGCACAAACTGAATAAACAT 58.685 34.615 0.00 0.00 0.00 2.71
3999 5052 6.676950 CCACATAGCACAAACTGAATAAACA 58.323 36.000 0.00 0.00 0.00 2.83
4000 5053 5.572896 GCCACATAGCACAAACTGAATAAAC 59.427 40.000 0.00 0.00 0.00 2.01
4003 5056 3.373748 CGCCACATAGCACAAACTGAATA 59.626 43.478 0.00 0.00 0.00 1.75
4004 5057 2.162208 CGCCACATAGCACAAACTGAAT 59.838 45.455 0.00 0.00 0.00 2.57
4006 5059 1.155889 CGCCACATAGCACAAACTGA 58.844 50.000 0.00 0.00 0.00 3.41
4007 5060 0.874390 ACGCCACATAGCACAAACTG 59.126 50.000 0.00 0.00 0.00 3.16
4008 5061 2.289444 ACTACGCCACATAGCACAAACT 60.289 45.455 0.00 0.00 0.00 2.66
4009 5062 2.073816 ACTACGCCACATAGCACAAAC 58.926 47.619 0.00 0.00 0.00 2.93
4011 5064 2.494471 AGTACTACGCCACATAGCACAA 59.506 45.455 0.00 0.00 0.00 3.33
4012 5065 2.097036 AGTACTACGCCACATAGCACA 58.903 47.619 0.00 0.00 0.00 4.57
4013 5066 2.543238 GGAGTACTACGCCACATAGCAC 60.543 54.545 0.00 0.00 38.02 4.40
4014 5067 1.679680 GGAGTACTACGCCACATAGCA 59.320 52.381 0.00 0.00 38.02 3.49
4015 5068 1.955080 AGGAGTACTACGCCACATAGC 59.045 52.381 11.18 0.00 40.81 2.97
4016 5069 5.961396 ATTAGGAGTACTACGCCACATAG 57.039 43.478 11.18 0.00 40.81 2.23
4017 5070 7.000472 ACTAATTAGGAGTACTACGCCACATA 59.000 38.462 16.73 0.00 40.81 2.29
4018 5071 5.832060 ACTAATTAGGAGTACTACGCCACAT 59.168 40.000 16.73 0.49 40.81 3.21
4019 5072 5.195940 ACTAATTAGGAGTACTACGCCACA 58.804 41.667 16.73 0.00 40.81 4.17
4020 5073 5.764487 ACTAATTAGGAGTACTACGCCAC 57.236 43.478 16.73 0.00 40.81 5.01
4021 5074 6.780457 AAACTAATTAGGAGTACTACGCCA 57.220 37.500 16.73 0.00 40.81 5.69
4023 5076 6.532657 TGCAAAACTAATTAGGAGTACTACGC 59.467 38.462 16.73 7.01 0.00 4.42
4024 5077 7.009907 GGTGCAAAACTAATTAGGAGTACTACG 59.990 40.741 16.73 0.00 0.00 3.51
4035 5093 1.135632 GCGCCGGTGCAAAACTAATTA 60.136 47.619 34.26 0.00 37.32 1.40
4070 5201 0.249398 ATCTGTACAGGGGTGTTCGC 59.751 55.000 22.48 0.00 0.00 4.70
4085 5216 7.987458 AGGTCAACCTGTATGTTAACATATCTG 59.013 37.037 26.70 21.36 46.55 2.90
4115 5247 2.962125 TGATGCAAACAATCATGCCAC 58.038 42.857 0.00 0.00 41.87 5.01
4155 5288 2.161808 TGTTTTTGCTTGAAACGGACGA 59.838 40.909 0.00 0.00 39.30 4.20
4187 5321 0.752054 ACCAATTTGTGCTGGGTGTG 59.248 50.000 0.00 0.00 0.00 3.82
4189 5323 3.591979 CACCAATTTGTGCTGGGTG 57.408 52.632 0.00 0.00 42.57 4.61
4190 5324 1.412343 GTTCACCAATTTGTGCTGGGT 59.588 47.619 4.80 0.00 36.17 4.51
4191 5325 1.411977 TGTTCACCAATTTGTGCTGGG 59.588 47.619 4.80 0.00 36.17 4.45
4194 5328 6.991531 ACAATTATTGTTCACCAATTTGTGCT 59.008 30.769 4.56 0.00 40.47 4.40
4195 5329 7.188468 ACAATTATTGTTCACCAATTTGTGC 57.812 32.000 4.56 0.00 40.47 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.