Multiple sequence alignment - TraesCS5A01G378100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G378100 chr5A 100.000 7555 0 0 1 7555 575602666 575610220 0.000000e+00 13952.0
1 TraesCS5A01G378100 chr5A 100.000 433 0 0 7793 8225 575610458 575610890 0.000000e+00 800.0
2 TraesCS5A01G378100 chr5A 92.814 167 9 3 3715 3880 657269846 657270010 1.070000e-58 239.0
3 TraesCS5A01G378100 chr5A 81.046 153 29 0 3721 3873 345349042 345349194 1.120000e-23 122.0
4 TraesCS5A01G378100 chr5A 97.959 49 1 0 7482 7530 464166527 464166479 1.470000e-12 86.1
5 TraesCS5A01G378100 chr5A 86.207 87 1 4 7479 7555 309094579 309094494 5.290000e-12 84.2
6 TraesCS5A01G378100 chr5D 95.397 6474 177 45 852 7255 457671450 457677872 0.000000e+00 10192.0
7 TraesCS5A01G378100 chr5D 92.169 830 57 4 10 839 457670651 457671472 0.000000e+00 1166.0
8 TraesCS5A01G378100 chr5D 89.744 195 10 4 7282 7476 457677870 457678054 2.970000e-59 241.0
9 TraesCS5A01G378100 chr5D 90.076 131 13 0 8095 8225 457678205 457678335 3.950000e-38 171.0
10 TraesCS5A01G378100 chr5D 88.660 97 9 2 7793 7889 457678115 457678209 5.220000e-22 117.0
11 TraesCS5A01G378100 chr5B 89.044 1716 136 20 1710 3401 559771517 559773204 0.000000e+00 2080.0
12 TraesCS5A01G378100 chr5B 91.111 990 35 19 6423 7374 559775498 559776472 0.000000e+00 1291.0
13 TraesCS5A01G378100 chr5B 92.593 702 32 15 852 1537 559770516 559771213 0.000000e+00 990.0
14 TraesCS5A01G378100 chr5B 86.997 869 90 12 4548 5401 559773286 559774146 0.000000e+00 957.0
15 TraesCS5A01G378100 chr5B 85.156 896 70 24 5488 6365 559774159 559775009 0.000000e+00 859.0
16 TraesCS5A01G378100 chr5B 91.400 593 36 5 243 834 559769955 559770533 0.000000e+00 798.0
17 TraesCS5A01G378100 chr5B 93.168 161 10 1 1532 1691 559771248 559771408 1.380000e-57 235.0
18 TraesCS5A01G378100 chr5B 91.463 164 11 3 8063 8225 559776699 559776860 1.070000e-53 222.0
19 TraesCS5A01G378100 chr5B 91.860 86 3 2 5399 5481 364139417 364139501 5.220000e-22 117.0
20 TraesCS5A01G378100 chr5B 85.227 88 11 2 4404 4489 318646692 318646605 1.140000e-13 89.8
21 TraesCS5A01G378100 chr5B 94.643 56 3 0 7428 7483 559776475 559776530 4.090000e-13 87.9
22 TraesCS5A01G378100 chr5B 89.130 46 4 1 7388 7433 559776472 559776516 1.000000e-03 56.5
23 TraesCS5A01G378100 chrUn 100.000 400 0 0 2045 2444 478708249 478707850 0.000000e+00 739.0
24 TraesCS5A01G378100 chr3A 96.133 181 7 0 7884 8064 373336499 373336679 6.240000e-76 296.0
25 TraesCS5A01G378100 chr3A 97.260 73 2 0 7483 7555 700942361 700942433 3.120000e-24 124.0
26 TraesCS5A01G378100 chr2B 93.452 168 11 0 3719 3886 31716187 31716020 4.930000e-62 250.0
27 TraesCS5A01G378100 chr2B 87.919 149 18 0 3717 3865 90402927 90403075 8.480000e-40 176.0
28 TraesCS5A01G378100 chr3B 92.398 171 12 1 3716 3886 733573555 733573386 8.250000e-60 243.0
29 TraesCS5A01G378100 chr7B 92.353 170 11 2 3718 3886 7036354 7036186 2.970000e-59 241.0
30 TraesCS5A01G378100 chr7B 90.854 164 15 0 3723 3886 268453083 268452920 3.860000e-53 220.0
31 TraesCS5A01G378100 chr7B 91.765 85 3 3 5400 5481 103891441 103891524 1.880000e-21 115.0
32 TraesCS5A01G378100 chr7B 92.958 71 4 1 3561 3630 490605814 490605744 1.460000e-17 102.0
33 TraesCS5A01G378100 chr4B 89.412 170 16 2 3719 3886 99751545 99751714 6.470000e-51 213.0
34 TraesCS5A01G378100 chr4A 88.268 179 20 1 7884 8061 150259445 150259623 6.470000e-51 213.0
35 TraesCS5A01G378100 chr4A 85.437 103 12 3 4036 4135 589317214 589317316 4.060000e-18 104.0
36 TraesCS5A01G378100 chr4A 85.227 88 11 2 4404 4489 331387343 331387256 1.140000e-13 89.8
37 TraesCS5A01G378100 chr6D 80.435 276 38 9 4036 4297 472716348 472716621 6.510000e-46 196.0
38 TraesCS5A01G378100 chr6D 85.393 89 9 4 4404 4489 59923480 59923393 1.140000e-13 89.8
39 TraesCS5A01G378100 chr7A 85.795 176 25 0 7892 8067 42861546 42861371 3.920000e-43 187.0
40 TraesCS5A01G378100 chr7A 92.941 85 2 2 5400 5481 562274919 562275002 4.030000e-23 121.0
41 TraesCS5A01G378100 chr7A 94.030 67 2 2 7483 7547 16697557 16697623 5.250000e-17 100.0
42 TraesCS5A01G378100 chr7A 95.745 47 2 0 7483 7529 702963088 702963042 8.850000e-10 76.8
43 TraesCS5A01G378100 chr7D 83.978 181 29 0 7884 8064 423651186 423651366 3.050000e-39 174.0
44 TraesCS5A01G378100 chr7D 83.784 185 28 2 7884 8067 460666336 460666153 3.050000e-39 174.0
45 TraesCS5A01G378100 chr7D 91.765 85 3 2 5400 5481 497023241 497023324 1.880000e-21 115.0
46 TraesCS5A01G378100 chr6A 78.909 275 43 10 4036 4297 617067260 617066988 1.100000e-38 172.0
47 TraesCS5A01G378100 chr6A 75.862 232 29 11 4036 4240 617069615 617069384 8.790000e-15 93.5
48 TraesCS5A01G378100 chr6A 90.000 50 5 0 3413 3462 588444068 588444117 1.920000e-06 65.8
49 TraesCS5A01G378100 chr2A 85.612 139 14 4 3542 3680 464168017 464167885 3.090000e-29 141.0
50 TraesCS5A01G378100 chr6B 79.452 219 28 9 4036 4237 717848477 717848695 1.110000e-28 139.0
51 TraesCS5A01G378100 chr6B 100.000 29 0 0 3413 3441 523759712 523759740 4.000000e-03 54.7
52 TraesCS5A01G378100 chr3D 91.089 101 8 1 4036 4135 433547066 433547166 1.440000e-27 135.0
53 TraesCS5A01G378100 chr3D 92.941 85 2 2 5400 5481 381989158 381989075 4.030000e-23 121.0
54 TraesCS5A01G378100 chr3D 91.765 85 3 2 5400 5481 429306242 429306325 1.880000e-21 115.0
55 TraesCS5A01G378100 chr1D 92.391 92 3 2 5393 5481 120537708 120537618 2.410000e-25 128.0
56 TraesCS5A01G378100 chr1D 93.333 75 3 1 7483 7555 191375629 191375555 8.730000e-20 110.0
57 TraesCS5A01G378100 chr1D 85.057 87 10 3 4404 4488 210957041 210957126 1.470000e-12 86.1
58 TraesCS5A01G378100 chr1D 83.117 77 13 0 7991 8067 199273081 199273157 4.120000e-08 71.3
59 TraesCS5A01G378100 chr1A 88.421 95 7 2 5391 5481 589902811 589902717 2.430000e-20 111.0
60 TraesCS5A01G378100 chr1A 95.238 63 3 0 7483 7545 482797874 482797936 5.250000e-17 100.0
61 TraesCS5A01G378100 chr1A 95.238 63 3 0 7483 7545 482804275 482804337 5.250000e-17 100.0
62 TraesCS5A01G378100 chr1A 95.238 63 3 0 7483 7545 482810955 482811017 5.250000e-17 100.0
63 TraesCS5A01G378100 chr2D 86.364 88 10 2 4404 4489 169220271 169220184 2.440000e-15 95.3
64 TraesCS5A01G378100 chr2D 81.818 99 15 3 4393 4489 153839548 153839451 6.840000e-11 80.5
65 TraesCS5A01G378100 chr1B 85.227 88 11 2 4404 4489 318928590 318928503 1.140000e-13 89.8
66 TraesCS5A01G378100 chr1B 85.227 88 11 2 4404 4489 508054133 508054046 1.140000e-13 89.8
67 TraesCS5A01G378100 chr1B 100.000 33 0 0 4040 4072 314580448 314580416 2.480000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G378100 chr5A 575602666 575610890 8224 False 7376.00 13952 100.0000 1 8225 2 chr5A.!!$F3 8224
1 TraesCS5A01G378100 chr5D 457670651 457678335 7684 False 2377.40 10192 91.2092 10 8225 5 chr5D.!!$F1 8215
2 TraesCS5A01G378100 chr5B 559769955 559776860 6905 False 757.64 2080 90.4705 243 8225 10 chr5B.!!$F2 7982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.033503 TGGGGTCGATGTGCTCTAGA 60.034 55.000 0.00 0.00 0.00 2.43 F
640 641 0.109781 CGGCGAAAATGTGTTCCCTG 60.110 55.000 0.00 0.00 0.00 4.45 F
976 989 0.751643 CCCCCGGGCAATAAACTCAG 60.752 60.000 17.73 0.00 0.00 3.35 F
992 1005 2.681778 AGGAGGCCACACTCTCGG 60.682 66.667 5.01 0.00 37.63 4.63 F
1291 1314 3.467226 ATAGGGACGGTGGGCACG 61.467 66.667 0.00 0.00 37.36 5.34 F
1929 2083 4.494526 CCAAAACTGAAGTTTGTTGCATGC 60.495 41.667 11.82 11.82 46.47 4.06 F
3545 3724 0.529555 CCAAAAAGCACCAACACGGG 60.530 55.000 0.00 0.00 40.22 5.28 F
4300 4484 0.036732 ACGATCCAAAGAAGCCTGCA 59.963 50.000 0.00 0.00 0.00 4.41 F
5248 5444 1.673767 ATGAGGAGGAAAGGGAGCAA 58.326 50.000 0.00 0.00 0.00 3.91 F
5950 6160 0.605589 GTGCTTTAGGGTTCGCCAGT 60.606 55.000 0.00 0.00 39.65 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1939 0.540923 ATCTGGACCTTGCTCTCAGC 59.459 55.000 0.00 0.00 42.82 4.26 R
1914 2068 2.798976 TGAGGCATGCAACAAACTTC 57.201 45.000 21.36 0.00 0.00 3.01 R
2748 2922 0.320374 TCTCACAACCTTACCTGCGG 59.680 55.000 0.00 0.00 0.00 5.69 R
2749 2923 2.069273 CTTCTCACAACCTTACCTGCG 58.931 52.381 0.00 0.00 0.00 5.18 R
2868 3042 7.989416 AAATCCATGAAACTTGATGCAATTT 57.011 28.000 0.00 0.00 0.00 1.82 R
3548 3727 0.250081 TGCGTATCACTGTGTTGCCA 60.250 50.000 7.79 1.68 0.00 4.92 R
5253 5449 0.464373 CTCAGCACAACCACCACACT 60.464 55.000 0.00 0.00 0.00 3.55 R
5560 5760 1.285078 CCCTTAAGCCCTGCCTTAACT 59.715 52.381 0.00 0.00 34.54 2.24 R
6606 7255 0.035056 AGGAAAGGAAGATGGCACCG 60.035 55.000 0.00 0.00 0.00 4.94 R
7385 8076 0.107508 ATCATCGTTGTCTGGCCAGG 60.108 55.000 32.23 16.01 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.764823 TCCCATACCTTTTAGTTTGTGCAG 59.235 41.667 0.00 0.00 0.00 4.41
114 115 0.824182 GTCTCGGATCTGGGGTCGAT 60.824 60.000 0.36 0.00 0.00 3.59
115 116 0.823769 TCTCGGATCTGGGGTCGATG 60.824 60.000 0.36 0.00 0.00 3.84
116 117 1.076265 TCGGATCTGGGGTCGATGT 60.076 57.895 0.62 0.00 0.00 3.06
117 118 1.068083 CGGATCTGGGGTCGATGTG 59.932 63.158 0.00 0.00 0.00 3.21
124 125 0.033503 TGGGGTCGATGTGCTCTAGA 60.034 55.000 0.00 0.00 0.00 2.43
126 127 1.394618 GGGTCGATGTGCTCTAGAGT 58.605 55.000 20.75 0.60 0.00 3.24
133 134 3.061831 CGATGTGCTCTAGAGTGCTTTTG 59.938 47.826 20.75 3.04 35.73 2.44
142 143 2.318908 AGAGTGCTTTTGATTTGCCCA 58.681 42.857 0.00 0.00 0.00 5.36
161 162 3.503365 CCATGAAGCAATGGGGATATGT 58.497 45.455 0.00 0.00 43.02 2.29
164 165 3.554934 TGAAGCAATGGGGATATGTGAC 58.445 45.455 0.00 0.00 0.00 3.67
166 167 3.889859 AGCAATGGGGATATGTGACAT 57.110 42.857 2.65 2.65 0.00 3.06
167 168 3.493334 AGCAATGGGGATATGTGACATG 58.507 45.455 8.61 0.00 0.00 3.21
176 177 5.221925 GGGGATATGTGACATGTATTGGAGT 60.222 44.000 8.61 0.00 0.00 3.85
184 185 6.823182 TGTGACATGTATTGGAGTGAAATAGG 59.177 38.462 0.00 0.00 0.00 2.57
230 231 0.181114 AGAAGGTCTGCACTGCACAA 59.819 50.000 0.00 0.00 33.79 3.33
244 245 4.505191 CACTGCACAAACTTGATTTCCTTG 59.495 41.667 0.00 0.00 0.00 3.61
253 254 6.916360 AACTTGATTTCCTTGCCTATCAAA 57.084 33.333 0.00 0.00 36.78 2.69
323 324 6.072119 CCAGTTTATGACTTGTTTCCTTACCC 60.072 42.308 0.00 0.00 36.10 3.69
329 330 1.804748 CTTGTTTCCTTACCCGTCTGC 59.195 52.381 0.00 0.00 0.00 4.26
379 380 7.041107 CCAAGGAATTTGAAACAGAACTGAAA 58.959 34.615 8.87 0.00 39.21 2.69
415 416 2.997897 GACGACCAGCCTCCACCT 60.998 66.667 0.00 0.00 0.00 4.00
416 417 3.302347 GACGACCAGCCTCCACCTG 62.302 68.421 0.00 0.00 0.00 4.00
491 492 2.856720 GCATCGAGTAGGAAAGAGAGCG 60.857 54.545 0.00 0.00 0.00 5.03
600 601 0.459489 TTGTTGTTCTTGCAGGCCAC 59.541 50.000 5.01 0.00 0.00 5.01
635 636 1.948145 TGTAACCGGCGAAAATGTGTT 59.052 42.857 9.30 4.40 0.00 3.32
640 641 0.109781 CGGCGAAAATGTGTTCCCTG 60.110 55.000 0.00 0.00 0.00 4.45
671 672 5.357878 ACCATGTTGCTAATGTATGAGGTTG 59.642 40.000 0.00 0.00 0.00 3.77
693 694 7.304735 GTTGCTTGTGTACATCAATGTATGAA 58.695 34.615 0.00 0.49 44.25 2.57
699 700 8.487313 TGTGTACATCAATGTATGAAGTTACC 57.513 34.615 0.00 0.00 44.25 2.85
714 715 5.538813 TGAAGTTACCTGTGTACATCTCTGT 59.461 40.000 0.00 0.00 39.49 3.41
798 799 4.081406 AGAATTGTGCCTGACATTGCTAA 58.919 39.130 0.00 0.00 33.40 3.09
833 834 1.198713 AGTAGTGAGGATGTGCCAGG 58.801 55.000 0.00 0.00 40.02 4.45
839 840 2.827921 GTGAGGATGTGCCAGGATTTTT 59.172 45.455 0.00 0.00 40.02 1.94
870 871 4.365514 TTTAGTTGAAGATGTGCCAGGA 57.634 40.909 0.00 0.00 0.00 3.86
955 956 2.437359 GCAGCAGCGGGACATCTT 60.437 61.111 0.00 0.00 0.00 2.40
956 957 2.467826 GCAGCAGCGGGACATCTTC 61.468 63.158 0.00 0.00 0.00 2.87
975 988 1.304952 CCCCCGGGCAATAAACTCA 59.695 57.895 17.73 0.00 0.00 3.41
976 989 0.751643 CCCCCGGGCAATAAACTCAG 60.752 60.000 17.73 0.00 0.00 3.35
992 1005 2.681778 AGGAGGCCACACTCTCGG 60.682 66.667 5.01 0.00 37.63 4.63
1291 1314 3.467226 ATAGGGACGGTGGGCACG 61.467 66.667 0.00 0.00 37.36 5.34
1396 1419 4.638865 ACCTGGTAAGTAATTTCGGCATTC 59.361 41.667 0.00 0.00 0.00 2.67
1785 1939 8.622157 AGAATCATTCACAGATTAAGCATGAAG 58.378 33.333 13.61 7.96 35.93 3.02
1914 2068 4.647424 TGAGTTTGCTAACCCAAAACTG 57.353 40.909 7.43 0.00 36.55 3.16
1929 2083 4.494526 CCAAAACTGAAGTTTGTTGCATGC 60.495 41.667 11.82 11.82 46.47 4.06
2019 2173 7.636359 GTCTTCTCGTCACATGTTAAATAATGC 59.364 37.037 0.00 0.00 0.00 3.56
2444 2616 6.896021 AACTCGAGCTGGCTTACTTATATA 57.104 37.500 13.61 0.00 0.00 0.86
2445 2617 7.469537 AACTCGAGCTGGCTTACTTATATAT 57.530 36.000 13.61 0.00 0.00 0.86
2446 2618 8.577048 AACTCGAGCTGGCTTACTTATATATA 57.423 34.615 13.61 0.00 0.00 0.86
2447 2619 8.754991 ACTCGAGCTGGCTTACTTATATATAT 57.245 34.615 13.61 0.00 0.00 0.86
2667 2839 7.284919 TCTGTAGTCTTCAAAGTCATGTGTA 57.715 36.000 0.00 0.00 0.00 2.90
2738 2912 7.119262 GCACCTTTTAGAAGATAGCAAGTTACA 59.881 37.037 0.00 0.00 34.71 2.41
2748 2922 9.548208 GAAGATAGCAAGTTACATTTGAAAGAC 57.452 33.333 0.00 0.00 0.00 3.01
2749 2923 8.045176 AGATAGCAAGTTACATTTGAAAGACC 57.955 34.615 0.00 0.00 0.00 3.85
2868 3042 0.817229 TGTCAGACATTTGCGCACCA 60.817 50.000 11.12 0.00 0.00 4.17
2948 3122 9.729550 ACATCTTTCCTGTATATATATAGCCCA 57.270 33.333 10.26 0.00 0.00 5.36
3001 3175 6.551227 AGTGATACACATAACTGGATGCTAGA 59.449 38.462 0.00 0.00 36.74 2.43
3332 3511 7.822822 GTCTGTCTTTGTATGTAAACCACCTAT 59.177 37.037 0.00 0.00 0.00 2.57
3513 3692 9.143155 GGTTTACCAAATTACTATGGAATCCAT 57.857 33.333 19.73 19.73 40.85 3.41
3527 3706 4.846168 GAATCCATTCCTATACCCTCCC 57.154 50.000 0.00 0.00 0.00 4.30
3545 3724 0.529555 CCAAAAAGCACCAACACGGG 60.530 55.000 0.00 0.00 40.22 5.28
3548 3727 0.469144 AAAAGCACCAACACGGGGAT 60.469 50.000 0.00 0.00 40.04 3.85
3591 3770 0.390124 GGGACGCGGGATACAACATA 59.610 55.000 12.47 0.00 39.74 2.29
3609 3788 6.997476 ACAACATATTCCAAAAACAGCCATTT 59.003 30.769 0.00 0.00 0.00 2.32
3799 3979 1.628340 CCAAAATCCCCAGAAAACCCC 59.372 52.381 0.00 0.00 0.00 4.95
3817 3997 2.390696 CCCATCAGCCCATTTGATTCA 58.609 47.619 0.00 0.00 33.14 2.57
3861 4041 4.060667 CAATCCCCGCCAACCCCT 62.061 66.667 0.00 0.00 0.00 4.79
3899 4079 3.064207 CAACAACCATATCGGGGATACG 58.936 50.000 0.00 0.00 40.22 3.06
4091 4273 7.161404 AGCTCAAACCTCATTTTATTTTTCCC 58.839 34.615 0.00 0.00 0.00 3.97
4153 4337 7.829211 CCACTCTCCTAAATCCTGTAAAATTCA 59.171 37.037 0.00 0.00 0.00 2.57
4265 4449 9.289782 CATTCCTACCTTTATTTCCTATTCCTG 57.710 37.037 0.00 0.00 0.00 3.86
4283 4467 6.677781 TTCCTGCATTTCTAAATTCCTACG 57.322 37.500 0.00 0.00 0.00 3.51
4300 4484 0.036732 ACGATCCAAAGAAGCCTGCA 59.963 50.000 0.00 0.00 0.00 4.41
4304 4488 2.071778 TCCAAAGAAGCCTGCAAACT 57.928 45.000 0.00 0.00 0.00 2.66
4310 4494 5.009610 CCAAAGAAGCCTGCAAACTTTAGTA 59.990 40.000 2.65 0.00 31.11 1.82
4353 4537 3.825308 ACATTGCATGTGATTTGACGTC 58.175 40.909 9.11 9.11 43.01 4.34
4359 4543 5.288015 TGCATGTGATTTGACGTCAATTTT 58.712 33.333 30.10 18.26 35.55 1.82
4397 4581 6.556874 AGGAGTTTATGTTTTTCCAATTCCCA 59.443 34.615 0.00 0.00 0.00 4.37
4415 4599 2.217750 CCATGAAGTGTGAACCGAACA 58.782 47.619 0.00 0.00 0.00 3.18
4513 4697 4.211330 TGCGAACCAAAGGGGCCA 62.211 61.111 4.39 0.00 42.05 5.36
4749 4942 2.813754 CGAAATTTGAGAAGAGTGCCCA 59.186 45.455 0.00 0.00 0.00 5.36
4785 4978 6.300354 GTGTTCTGCACGCCTTATATATTT 57.700 37.500 0.00 0.00 38.45 1.40
4888 5081 4.002982 GTCAGTCATGATTGTAAGGCACA 58.997 43.478 16.80 0.00 37.87 4.57
4913 5106 2.042686 ACTGTTGCTTCAGTGCTGAA 57.957 45.000 13.22 13.22 45.40 3.02
5164 5359 3.137533 GAGGATGAATAGAGGTTGCAGC 58.862 50.000 0.00 0.00 0.00 5.25
5248 5444 1.673767 ATGAGGAGGAAAGGGAGCAA 58.326 50.000 0.00 0.00 0.00 3.91
5253 5449 2.447047 AGGAGGAAAGGGAGCAAAAGAA 59.553 45.455 0.00 0.00 0.00 2.52
5375 5571 5.337169 GCATAACTAAAGGGCCATTGTTCAA 60.337 40.000 1.95 0.00 0.00 2.69
5482 5682 2.536997 ATTTTGGGACGGAGGGAGCG 62.537 60.000 0.00 0.00 0.00 5.03
5558 5758 2.159085 CCTCCTCGCCCTAACTGTTTAG 60.159 54.545 0.00 0.00 35.35 1.85
5560 5760 3.167485 TCCTCGCCCTAACTGTTTAGAA 58.833 45.455 0.00 0.00 37.49 2.10
5577 5779 5.508280 TTAGAAGTTAAGGCAGGGCTTAA 57.492 39.130 20.13 20.13 0.00 1.85
5950 6160 0.605589 GTGCTTTAGGGTTCGCCAGT 60.606 55.000 0.00 0.00 39.65 4.00
6154 6371 1.680207 TGATCGCTGGACATGAGAGAG 59.320 52.381 0.00 0.00 0.00 3.20
6273 6490 2.158559 CAAAATGATGTGACCCGGTGA 58.841 47.619 0.00 0.00 0.00 4.02
6387 6754 9.696917 AGTAGAAATTTCATGTGGATTGTTTTC 57.303 29.630 19.99 0.00 0.00 2.29
6586 7235 3.719268 TCATGTTAGGTTCAGCCACAT 57.281 42.857 0.00 0.00 40.61 3.21
6603 7252 3.562141 CCACATCGTGTTAGGTTGTGAAA 59.438 43.478 11.92 0.00 39.98 2.69
6605 7254 5.278266 CCACATCGTGTTAGGTTGTGAAATT 60.278 40.000 11.92 0.00 39.98 1.82
6606 7255 5.851177 CACATCGTGTTAGGTTGTGAAATTC 59.149 40.000 6.81 0.00 39.98 2.17
6607 7256 4.718858 TCGTGTTAGGTTGTGAAATTCG 57.281 40.909 0.00 0.00 0.00 3.34
6666 7321 3.505680 TCATAGCAGTCGGTTGCATTTTT 59.494 39.130 13.22 0.00 46.47 1.94
6703 7358 5.527951 TCATTTGTTTGCAGCAATGATTTGT 59.472 32.000 9.12 0.00 35.17 2.83
6725 7380 7.447374 TGTCCATCATACGTTTTCTTTGAAT 57.553 32.000 0.00 0.00 0.00 2.57
6728 7383 9.490663 GTCCATCATACGTTTTCTTTGAATAAG 57.509 33.333 0.00 0.00 0.00 1.73
6987 7644 0.593518 CATCTGACGCCAGCGACTAG 60.594 60.000 20.32 12.85 42.83 2.57
7044 7707 3.621953 GCATCCAGCTCCAGTATCC 57.378 57.895 0.00 0.00 41.15 2.59
7089 7768 1.352156 ATCTGCGCGTCTCGGTTTTC 61.352 55.000 8.43 0.00 38.94 2.29
7113 7792 2.161030 GTACATAGGTAGGCTCCGGAG 58.839 57.143 27.83 27.83 0.00 4.63
7132 7811 5.875359 CCGGAGGCTTTATTATTAGTCCATC 59.125 44.000 0.00 0.00 46.14 3.51
7145 7824 1.080093 TCCATCTGTTCCACGTCGC 60.080 57.895 0.00 0.00 0.00 5.19
7165 7855 3.249799 CGCTGGTAGTGACAAATTTGTGA 59.750 43.478 27.85 17.65 42.43 3.58
7181 7871 4.783764 TTGTGAACGAGAAGCTCTATCA 57.216 40.909 0.00 0.00 0.00 2.15
7216 7907 2.181021 GCGTTCCATCGGTCGAGT 59.819 61.111 0.00 0.00 0.00 4.18
7217 7908 1.872679 GCGTTCCATCGGTCGAGTC 60.873 63.158 0.00 0.00 0.00 3.36
7218 7909 1.226603 CGTTCCATCGGTCGAGTCC 60.227 63.158 0.00 0.00 0.00 3.85
7219 7910 1.141234 GTTCCATCGGTCGAGTCCC 59.859 63.158 0.00 0.00 0.00 4.46
7220 7911 2.412323 TTCCATCGGTCGAGTCCCG 61.412 63.158 6.61 6.61 46.83 5.14
7221 7912 4.570663 CCATCGGTCGAGTCCCGC 62.571 72.222 8.01 0.00 45.09 6.13
7314 8005 2.006888 CCCGAATATCGCAACTTGTGT 58.993 47.619 2.31 0.00 38.82 3.72
7324 8015 9.772973 AATATCGCAACTTGTGTTAGGAATATA 57.227 29.630 2.31 0.00 34.60 0.86
7385 8076 2.032302 ACACGTCGATACTCTGATGCTC 59.968 50.000 0.00 0.00 0.00 4.26
7395 8086 1.153208 CTGATGCTCCTGGCCAGAC 60.153 63.158 34.91 22.08 40.92 3.51
7396 8087 1.907222 CTGATGCTCCTGGCCAGACA 61.907 60.000 34.91 26.72 40.92 3.41
7397 8088 1.300963 GATGCTCCTGGCCAGACAA 59.699 57.895 34.91 17.40 40.92 3.18
7398 8089 1.001641 ATGCTCCTGGCCAGACAAC 60.002 57.895 34.91 19.57 40.92 3.32
7399 8090 2.743928 GCTCCTGGCCAGACAACG 60.744 66.667 34.91 16.93 34.27 4.10
7401 8092 1.599047 CTCCTGGCCAGACAACGAT 59.401 57.895 34.91 0.00 0.00 3.73
7402 8093 0.742281 CTCCTGGCCAGACAACGATG 60.742 60.000 34.91 14.59 0.00 3.84
7403 8094 1.191489 TCCTGGCCAGACAACGATGA 61.191 55.000 34.91 16.81 0.00 2.92
7404 8095 0.107508 CCTGGCCAGACAACGATGAT 60.108 55.000 34.91 0.00 0.00 2.45
7405 8096 1.679944 CCTGGCCAGACAACGATGATT 60.680 52.381 34.91 0.00 0.00 2.57
7406 8097 2.086869 CTGGCCAGACAACGATGATTT 58.913 47.619 29.88 0.00 0.00 2.17
7407 8098 1.811965 TGGCCAGACAACGATGATTTG 59.188 47.619 0.00 0.00 0.00 2.32
7408 8099 1.468054 GGCCAGACAACGATGATTTGC 60.468 52.381 0.00 0.00 0.00 3.68
7409 8100 1.199789 GCCAGACAACGATGATTTGCA 59.800 47.619 0.00 0.00 0.00 4.08
7410 8101 2.855180 CCAGACAACGATGATTTGCAC 58.145 47.619 0.00 0.00 0.00 4.57
7411 8102 2.414559 CCAGACAACGATGATTTGCACC 60.415 50.000 0.00 0.00 0.00 5.01
7412 8103 1.464608 AGACAACGATGATTTGCACCG 59.535 47.619 0.00 0.00 0.00 4.94
7413 8104 1.463056 GACAACGATGATTTGCACCGA 59.537 47.619 0.00 0.00 0.00 4.69
7476 8167 3.735181 GTCGACCAGACGGCTATTT 57.265 52.632 3.51 0.00 40.43 1.40
7479 8170 1.134907 TCGACCAGACGGCTATTTTCC 60.135 52.381 0.00 0.00 34.57 3.13
7483 8174 0.254747 CAGACGGCTATTTTCCCCCA 59.745 55.000 0.00 0.00 0.00 4.96
7484 8175 0.996583 AGACGGCTATTTTCCCCCAA 59.003 50.000 0.00 0.00 0.00 4.12
7486 8177 2.781174 AGACGGCTATTTTCCCCCAATA 59.219 45.455 0.00 0.00 0.00 1.90
7487 8178 3.203487 AGACGGCTATTTTCCCCCAATAA 59.797 43.478 0.00 0.00 0.00 1.40
7488 8179 4.141018 AGACGGCTATTTTCCCCCAATAAT 60.141 41.667 0.00 0.00 0.00 1.28
7489 8180 3.895041 ACGGCTATTTTCCCCCAATAATG 59.105 43.478 0.00 0.00 0.00 1.90
7490 8181 3.306019 CGGCTATTTTCCCCCAATAATGC 60.306 47.826 0.00 0.00 0.00 3.56
7492 8183 5.083821 GGCTATTTTCCCCCAATAATGCTA 58.916 41.667 0.00 0.00 0.00 3.49
7493 8184 5.542251 GGCTATTTTCCCCCAATAATGCTAA 59.458 40.000 0.00 0.00 0.00 3.09
7494 8185 6.042666 GGCTATTTTCCCCCAATAATGCTAAA 59.957 38.462 0.00 0.00 0.00 1.85
7495 8186 6.929049 GCTATTTTCCCCCAATAATGCTAAAC 59.071 38.462 0.00 0.00 0.00 2.01
7498 8189 7.979786 TTTTCCCCCAATAATGCTAAACATA 57.020 32.000 0.00 0.00 38.34 2.29
7499 8190 6.969993 TTCCCCCAATAATGCTAAACATAC 57.030 37.500 0.00 0.00 38.34 2.39
7501 8192 6.436027 TCCCCCAATAATGCTAAACATACAA 58.564 36.000 0.00 0.00 38.34 2.41
7502 8193 6.897966 TCCCCCAATAATGCTAAACATACAAA 59.102 34.615 0.00 0.00 38.34 2.83
7504 8195 7.069331 CCCCCAATAATGCTAAACATACAAAGA 59.931 37.037 0.00 0.00 38.34 2.52
7505 8196 8.137437 CCCCAATAATGCTAAACATACAAAGAG 58.863 37.037 0.00 0.00 38.34 2.85
7506 8197 8.686334 CCCAATAATGCTAAACATACAAAGAGT 58.314 33.333 0.00 0.00 38.34 3.24
7512 8203 7.112528 TGCTAAACATACAAAGAGTTACACG 57.887 36.000 0.00 0.00 0.00 4.49
7515 8206 5.591643 AACATACAAAGAGTTACACGCTG 57.408 39.130 0.00 0.00 0.00 5.18
7516 8207 4.878439 ACATACAAAGAGTTACACGCTGA 58.122 39.130 0.00 0.00 0.00 4.26
7518 8209 3.454371 ACAAAGAGTTACACGCTGACT 57.546 42.857 0.00 0.00 0.00 3.41
7519 8210 4.579454 ACAAAGAGTTACACGCTGACTA 57.421 40.909 0.00 0.00 0.00 2.59
7520 8211 4.547532 ACAAAGAGTTACACGCTGACTAG 58.452 43.478 0.00 0.00 0.00 2.57
7521 8212 3.851976 AAGAGTTACACGCTGACTAGG 57.148 47.619 0.00 0.00 0.00 3.02
7522 8213 3.069079 AGAGTTACACGCTGACTAGGA 57.931 47.619 0.00 0.00 0.00 2.94
7524 8215 4.017808 AGAGTTACACGCTGACTAGGATT 58.982 43.478 0.00 0.00 0.00 3.01
7525 8216 4.463186 AGAGTTACACGCTGACTAGGATTT 59.537 41.667 0.00 0.00 0.00 2.17
7526 8217 5.047235 AGAGTTACACGCTGACTAGGATTTT 60.047 40.000 0.00 0.00 0.00 1.82
7527 8218 5.548406 AGTTACACGCTGACTAGGATTTTT 58.452 37.500 0.00 0.00 0.00 1.94
7551 8242 9.921637 TTTTTCATCCACTAACCAATCATAAAC 57.078 29.630 0.00 0.00 0.00 2.01
7552 8243 8.877864 TTTCATCCACTAACCAATCATAAACT 57.122 30.769 0.00 0.00 0.00 2.66
7553 8244 8.877864 TTCATCCACTAACCAATCATAAACTT 57.122 30.769 0.00 0.00 0.00 2.66
7554 8245 8.279970 TCATCCACTAACCAATCATAAACTTG 57.720 34.615 0.00 0.00 0.00 3.16
7829 8520 1.274703 ATCGCACCATCCCAGAAGGT 61.275 55.000 0.00 0.00 33.66 3.50
7830 8521 1.002134 CGCACCATCCCAGAAGGTT 60.002 57.895 0.00 0.00 30.77 3.50
7845 8536 5.163332 CCAGAAGGTTCAAGGGGTATAGTAC 60.163 48.000 0.00 0.00 0.00 2.73
7848 8539 6.838090 AGAAGGTTCAAGGGGTATAGTACTAC 59.162 42.308 4.31 0.00 0.00 2.73
7870 8561 7.808856 ACTACACTTCGTTTTCTCTTGTATCTC 59.191 37.037 0.00 0.00 0.00 2.75
7899 8590 9.606631 ATTCTTAGTAAACTTAGGAGATGCAAG 57.393 33.333 0.00 0.00 0.00 4.01
7901 8592 8.812972 TCTTAGTAAACTTAGGAGATGCAAGAA 58.187 33.333 0.00 0.00 0.00 2.52
7903 8594 9.787435 TTAGTAAACTTAGGAGATGCAAGAAAA 57.213 29.630 0.00 0.00 0.00 2.29
7906 8597 6.765915 AACTTAGGAGATGCAAGAAAATCC 57.234 37.500 0.00 0.00 0.00 3.01
7908 8599 6.488715 ACTTAGGAGATGCAAGAAAATCCTT 58.511 36.000 9.17 0.00 38.17 3.36
7909 8600 6.601217 ACTTAGGAGATGCAAGAAAATCCTTC 59.399 38.462 9.17 0.00 38.17 3.46
7911 8602 5.578073 AGGAGATGCAAGAAAATCCTTCTT 58.422 37.500 0.00 0.00 39.16 2.52
7952 8643 9.386122 ACTAGATATAAAATCTGAGACCATGGT 57.614 33.333 19.89 19.89 0.00 3.55
7955 8646 8.943085 AGATATAAAATCTGAGACCATGGTTCT 58.057 33.333 20.85 16.99 0.00 3.01
7956 8647 8.915057 ATATAAAATCTGAGACCATGGTTCTG 57.085 34.615 20.85 19.61 0.00 3.02
7957 8648 4.647564 AAATCTGAGACCATGGTTCTGT 57.352 40.909 20.85 4.13 0.00 3.41
7958 8649 3.902881 ATCTGAGACCATGGTTCTGTC 57.097 47.619 20.85 13.81 0.00 3.51
7959 8650 2.894731 TCTGAGACCATGGTTCTGTCT 58.105 47.619 20.85 11.08 41.83 3.41
7960 8651 2.564504 TCTGAGACCATGGTTCTGTCTG 59.435 50.000 20.85 16.10 39.36 3.51
7961 8652 2.564504 CTGAGACCATGGTTCTGTCTGA 59.435 50.000 20.85 4.06 39.36 3.27
7962 8653 3.176411 TGAGACCATGGTTCTGTCTGAT 58.824 45.455 20.85 0.00 39.36 2.90
7963 8654 3.055602 TGAGACCATGGTTCTGTCTGATG 60.056 47.826 20.85 0.00 39.36 3.07
7964 8655 2.012673 GACCATGGTTCTGTCTGATGC 58.987 52.381 20.85 0.00 0.00 3.91
7965 8656 1.632409 ACCATGGTTCTGTCTGATGCT 59.368 47.619 13.00 0.00 0.00 3.79
7966 8657 2.840038 ACCATGGTTCTGTCTGATGCTA 59.160 45.455 13.00 0.00 0.00 3.49
7967 8658 3.264193 ACCATGGTTCTGTCTGATGCTAA 59.736 43.478 13.00 0.00 0.00 3.09
7968 8659 3.875727 CCATGGTTCTGTCTGATGCTAAG 59.124 47.826 2.57 0.00 0.00 2.18
7969 8660 4.511527 CATGGTTCTGTCTGATGCTAAGT 58.488 43.478 0.00 0.00 0.00 2.24
7970 8661 4.623932 TGGTTCTGTCTGATGCTAAGTT 57.376 40.909 0.00 0.00 0.00 2.66
7971 8662 4.973168 TGGTTCTGTCTGATGCTAAGTTT 58.027 39.130 0.00 0.00 0.00 2.66
7972 8663 5.376625 TGGTTCTGTCTGATGCTAAGTTTT 58.623 37.500 0.00 0.00 0.00 2.43
7973 8664 5.470098 TGGTTCTGTCTGATGCTAAGTTTTC 59.530 40.000 0.00 0.00 0.00 2.29
7974 8665 5.703130 GGTTCTGTCTGATGCTAAGTTTTCT 59.297 40.000 0.00 0.00 0.00 2.52
7975 8666 6.874134 GGTTCTGTCTGATGCTAAGTTTTCTA 59.126 38.462 0.00 0.00 0.00 2.10
7976 8667 7.064016 GGTTCTGTCTGATGCTAAGTTTTCTAG 59.936 40.741 0.00 0.00 0.00 2.43
7977 8668 6.634805 TCTGTCTGATGCTAAGTTTTCTAGG 58.365 40.000 0.00 0.00 0.00 3.02
7978 8669 5.178797 TGTCTGATGCTAAGTTTTCTAGGC 58.821 41.667 0.00 0.00 0.00 3.93
7979 8670 5.046304 TGTCTGATGCTAAGTTTTCTAGGCT 60.046 40.000 0.00 0.00 0.00 4.58
7980 8671 5.522097 GTCTGATGCTAAGTTTTCTAGGCTC 59.478 44.000 0.00 0.00 0.00 4.70
7981 8672 5.187772 TCTGATGCTAAGTTTTCTAGGCTCA 59.812 40.000 0.00 0.00 0.00 4.26
7982 8673 5.804639 TGATGCTAAGTTTTCTAGGCTCAA 58.195 37.500 0.00 0.00 0.00 3.02
7983 8674 6.237901 TGATGCTAAGTTTTCTAGGCTCAAA 58.762 36.000 0.00 0.00 0.00 2.69
7984 8675 6.886459 TGATGCTAAGTTTTCTAGGCTCAAAT 59.114 34.615 0.00 0.00 0.00 2.32
7985 8676 7.394359 TGATGCTAAGTTTTCTAGGCTCAAATT 59.606 33.333 0.00 0.00 0.00 1.82
7986 8677 7.524717 TGCTAAGTTTTCTAGGCTCAAATTT 57.475 32.000 0.00 0.00 0.00 1.82
7987 8678 8.630054 TGCTAAGTTTTCTAGGCTCAAATTTA 57.370 30.769 0.00 0.00 0.00 1.40
7988 8679 8.512138 TGCTAAGTTTTCTAGGCTCAAATTTAC 58.488 33.333 0.00 0.00 0.00 2.01
7989 8680 7.968956 GCTAAGTTTTCTAGGCTCAAATTTACC 59.031 37.037 0.00 0.00 0.00 2.85
7990 8681 6.835819 AGTTTTCTAGGCTCAAATTTACCC 57.164 37.500 0.00 0.00 0.00 3.69
7991 8682 6.311735 AGTTTTCTAGGCTCAAATTTACCCA 58.688 36.000 0.00 0.00 0.00 4.51
7992 8683 6.954102 AGTTTTCTAGGCTCAAATTTACCCAT 59.046 34.615 0.00 0.00 0.00 4.00
7993 8684 8.113462 AGTTTTCTAGGCTCAAATTTACCCATA 58.887 33.333 0.00 0.00 0.00 2.74
7994 8685 8.406297 GTTTTCTAGGCTCAAATTTACCCATAG 58.594 37.037 0.00 0.00 0.00 2.23
7995 8686 6.824958 TCTAGGCTCAAATTTACCCATAGT 57.175 37.500 0.00 0.00 0.00 2.12
7996 8687 6.591935 TCTAGGCTCAAATTTACCCATAGTG 58.408 40.000 0.00 0.00 0.00 2.74
7997 8688 5.450818 AGGCTCAAATTTACCCATAGTGA 57.549 39.130 0.00 0.00 0.00 3.41
7998 8689 5.440610 AGGCTCAAATTTACCCATAGTGAG 58.559 41.667 0.00 0.00 35.28 3.51
7999 8690 5.175090 GCTCAAATTTACCCATAGTGAGC 57.825 43.478 6.96 6.96 46.65 4.26
8002 8693 7.020914 CTCAAATTTACCCATAGTGAGCTTC 57.979 40.000 0.00 0.00 0.00 3.86
8003 8694 6.480763 TCAAATTTACCCATAGTGAGCTTCA 58.519 36.000 0.00 0.00 0.00 3.02
8004 8695 6.599244 TCAAATTTACCCATAGTGAGCTTCAG 59.401 38.462 0.00 0.00 0.00 3.02
8005 8696 5.957771 ATTTACCCATAGTGAGCTTCAGA 57.042 39.130 0.00 0.00 0.00 3.27
8006 8697 5.755409 TTTACCCATAGTGAGCTTCAGAA 57.245 39.130 0.00 0.00 0.00 3.02
8007 8698 5.755409 TTACCCATAGTGAGCTTCAGAAA 57.245 39.130 0.00 0.00 0.00 2.52
8008 8699 4.640771 ACCCATAGTGAGCTTCAGAAAA 57.359 40.909 0.00 0.00 0.00 2.29
8009 8700 5.184892 ACCCATAGTGAGCTTCAGAAAAT 57.815 39.130 0.00 0.00 0.00 1.82
8010 8701 5.189180 ACCCATAGTGAGCTTCAGAAAATC 58.811 41.667 0.00 0.00 0.00 2.17
8011 8702 5.045286 ACCCATAGTGAGCTTCAGAAAATCT 60.045 40.000 0.00 0.00 0.00 2.40
8012 8703 5.296283 CCCATAGTGAGCTTCAGAAAATCTG 59.704 44.000 0.88 0.88 45.59 2.90
8013 8704 5.296283 CCATAGTGAGCTTCAGAAAATCTGG 59.704 44.000 7.47 0.00 44.39 3.86
8014 8705 3.080319 AGTGAGCTTCAGAAAATCTGGC 58.920 45.455 7.47 4.38 44.39 4.85
8015 8706 3.080319 GTGAGCTTCAGAAAATCTGGCT 58.920 45.455 9.81 9.81 44.39 4.75
8016 8707 3.505293 GTGAGCTTCAGAAAATCTGGCTT 59.495 43.478 10.91 0.00 44.39 4.35
8017 8708 3.755378 TGAGCTTCAGAAAATCTGGCTTC 59.245 43.478 10.91 6.76 44.39 3.86
8018 8709 3.755378 GAGCTTCAGAAAATCTGGCTTCA 59.245 43.478 10.91 0.00 44.39 3.02
8019 8710 3.757493 AGCTTCAGAAAATCTGGCTTCAG 59.243 43.478 7.47 0.00 44.39 3.02
8020 8711 3.119566 GCTTCAGAAAATCTGGCTTCAGG 60.120 47.826 7.47 0.00 44.39 3.86
8021 8712 4.330250 CTTCAGAAAATCTGGCTTCAGGA 58.670 43.478 7.47 0.00 44.39 3.86
8022 8713 4.371624 TCAGAAAATCTGGCTTCAGGAA 57.628 40.909 7.47 0.00 44.39 3.36
8023 8714 4.330250 TCAGAAAATCTGGCTTCAGGAAG 58.670 43.478 7.47 4.67 44.39 3.46
8024 8715 4.042062 TCAGAAAATCTGGCTTCAGGAAGA 59.958 41.667 13.01 0.00 44.39 2.87
8025 8716 4.763793 CAGAAAATCTGGCTTCAGGAAGAA 59.236 41.667 13.01 0.00 40.71 2.52
8026 8717 5.242393 CAGAAAATCTGGCTTCAGGAAGAAA 59.758 40.000 13.01 0.00 40.71 2.52
8027 8718 6.015282 AGAAAATCTGGCTTCAGGAAGAAAT 58.985 36.000 13.01 0.00 40.79 2.17
8028 8719 6.496218 AGAAAATCTGGCTTCAGGAAGAAATT 59.504 34.615 13.01 3.76 40.79 1.82
8029 8720 7.671398 AGAAAATCTGGCTTCAGGAAGAAATTA 59.329 33.333 13.01 0.00 40.79 1.40
8030 8721 7.781324 AAATCTGGCTTCAGGAAGAAATTAA 57.219 32.000 13.01 0.00 40.79 1.40
8031 8722 7.401955 AATCTGGCTTCAGGAAGAAATTAAG 57.598 36.000 13.01 1.31 40.79 1.85
8032 8723 5.256474 TCTGGCTTCAGGAAGAAATTAAGG 58.744 41.667 13.01 0.00 40.79 2.69
8033 8724 3.763897 TGGCTTCAGGAAGAAATTAAGGC 59.236 43.478 13.01 0.00 40.79 4.35
8034 8725 3.763897 GGCTTCAGGAAGAAATTAAGGCA 59.236 43.478 13.01 0.00 40.79 4.75
8035 8726 4.220602 GGCTTCAGGAAGAAATTAAGGCAA 59.779 41.667 13.01 0.00 40.79 4.52
8036 8727 5.279456 GGCTTCAGGAAGAAATTAAGGCAAA 60.279 40.000 13.01 0.00 40.79 3.68
8037 8728 6.223120 GCTTCAGGAAGAAATTAAGGCAAAA 58.777 36.000 13.01 0.00 40.79 2.44
8038 8729 6.146184 GCTTCAGGAAGAAATTAAGGCAAAAC 59.854 38.462 13.01 0.00 40.79 2.43
8039 8730 6.723298 TCAGGAAGAAATTAAGGCAAAACA 57.277 33.333 0.00 0.00 0.00 2.83
8040 8731 6.748132 TCAGGAAGAAATTAAGGCAAAACAG 58.252 36.000 0.00 0.00 0.00 3.16
8041 8732 6.549364 TCAGGAAGAAATTAAGGCAAAACAGA 59.451 34.615 0.00 0.00 0.00 3.41
8042 8733 6.865205 CAGGAAGAAATTAAGGCAAAACAGAG 59.135 38.462 0.00 0.00 0.00 3.35
8043 8734 6.777580 AGGAAGAAATTAAGGCAAAACAGAGA 59.222 34.615 0.00 0.00 0.00 3.10
8044 8735 7.452813 AGGAAGAAATTAAGGCAAAACAGAGAT 59.547 33.333 0.00 0.00 0.00 2.75
8045 8736 7.757173 GGAAGAAATTAAGGCAAAACAGAGATC 59.243 37.037 0.00 0.00 0.00 2.75
8046 8737 8.414629 AAGAAATTAAGGCAAAACAGAGATCT 57.585 30.769 0.00 0.00 0.00 2.75
8047 8738 9.520515 AAGAAATTAAGGCAAAACAGAGATCTA 57.479 29.630 0.00 0.00 0.00 1.98
8048 8739 9.171877 AGAAATTAAGGCAAAACAGAGATCTAG 57.828 33.333 0.00 0.00 0.00 2.43
8049 8740 9.167311 GAAATTAAGGCAAAACAGAGATCTAGA 57.833 33.333 0.00 0.00 0.00 2.43
8050 8741 8.729805 AATTAAGGCAAAACAGAGATCTAGAG 57.270 34.615 0.00 0.00 0.00 2.43
8051 8742 7.482169 TTAAGGCAAAACAGAGATCTAGAGA 57.518 36.000 0.00 0.00 0.00 3.10
8052 8743 6.558488 AAGGCAAAACAGAGATCTAGAGAT 57.442 37.500 0.00 0.00 37.51 2.75
8053 8744 7.667575 AAGGCAAAACAGAGATCTAGAGATA 57.332 36.000 0.00 0.00 34.37 1.98
8054 8745 7.288810 AGGCAAAACAGAGATCTAGAGATAG 57.711 40.000 0.00 0.00 34.37 2.08
8055 8746 6.267471 AGGCAAAACAGAGATCTAGAGATAGG 59.733 42.308 0.00 0.00 34.37 2.57
8056 8747 6.454795 GCAAAACAGAGATCTAGAGATAGGG 58.545 44.000 0.00 0.00 34.37 3.53
8057 8748 6.266558 GCAAAACAGAGATCTAGAGATAGGGA 59.733 42.308 0.00 0.00 34.37 4.20
8058 8749 7.657336 CAAAACAGAGATCTAGAGATAGGGAC 58.343 42.308 0.00 0.00 34.37 4.46
8059 8750 6.523035 AACAGAGATCTAGAGATAGGGACA 57.477 41.667 0.00 0.00 34.37 4.02
8060 8751 6.718593 ACAGAGATCTAGAGATAGGGACAT 57.281 41.667 0.00 0.00 34.37 3.06
8061 8752 6.721318 ACAGAGATCTAGAGATAGGGACATC 58.279 44.000 0.00 0.00 34.37 3.06
8069 8760 7.530435 TCTAGAGATAGGGACATCAAAGATGA 58.470 38.462 13.46 0.00 40.57 2.92
8078 8769 7.512992 AGGGACATCAAAGATGACTAATTAGG 58.487 38.462 16.73 0.00 38.69 2.69
8084 8775 9.064706 CATCAAAGATGACTAATTAGGCTCAAT 57.935 33.333 19.12 4.66 38.69 2.57
8144 8835 3.259374 TGTGGATGAAGACCTCACTCTTC 59.741 47.826 2.54 2.54 44.52 2.87
8187 8878 2.736670 AGCCATAAAGACCATCCCAC 57.263 50.000 0.00 0.00 0.00 4.61
8215 8906 1.826385 AAGGGTGGCTTCGATTTCTG 58.174 50.000 0.00 0.00 0.00 3.02
8221 8912 2.290641 GTGGCTTCGATTTCTGTTGTGT 59.709 45.455 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.223711 GGACAACCACACACATTTGGAC 60.224 50.000 0.00 0.00 36.28 4.02
2 3 1.068434 GGGACAACCACACACATTTGG 59.932 52.381 0.00 0.00 39.85 3.28
3 4 1.753649 TGGGACAACCACACACATTTG 59.246 47.619 0.00 0.00 46.80 2.32
4 5 2.151502 TGGGACAACCACACACATTT 57.848 45.000 0.00 0.00 46.80 2.32
5 6 3.913855 TGGGACAACCACACACATT 57.086 47.368 0.00 0.00 46.80 2.71
25 26 2.383855 TGGCTGCACAAACTAAAAGGT 58.616 42.857 0.50 0.00 0.00 3.50
42 43 1.355971 CAAGCACAAATCAGCATGGC 58.644 50.000 0.00 0.00 36.16 4.40
114 115 3.751479 TCAAAAGCACTCTAGAGCACA 57.249 42.857 19.97 0.00 34.00 4.57
115 116 5.388944 CAAATCAAAAGCACTCTAGAGCAC 58.611 41.667 19.97 11.78 34.00 4.40
116 117 4.083110 GCAAATCAAAAGCACTCTAGAGCA 60.083 41.667 19.97 0.00 34.00 4.26
117 118 4.410448 GCAAATCAAAAGCACTCTAGAGC 58.590 43.478 19.97 7.80 0.00 4.09
124 125 2.633967 TCATGGGCAAATCAAAAGCACT 59.366 40.909 0.00 0.00 31.64 4.40
126 127 3.666274 CTTCATGGGCAAATCAAAAGCA 58.334 40.909 0.00 0.00 0.00 3.91
142 143 4.147321 GTCACATATCCCCATTGCTTCAT 58.853 43.478 0.00 0.00 0.00 2.57
161 162 6.157820 TCCCTATTTCACTCCAATACATGTCA 59.842 38.462 0.00 0.00 0.00 3.58
164 165 6.595682 ACTCCCTATTTCACTCCAATACATG 58.404 40.000 0.00 0.00 0.00 3.21
166 167 6.636454 AACTCCCTATTTCACTCCAATACA 57.364 37.500 0.00 0.00 0.00 2.29
167 168 7.173390 GCATAACTCCCTATTTCACTCCAATAC 59.827 40.741 0.00 0.00 0.00 1.89
184 185 6.595716 CCTAGCCATGTATTTAGCATAACTCC 59.404 42.308 0.00 0.00 0.00 3.85
230 231 6.916360 TTTGATAGGCAAGGAAATCAAGTT 57.084 33.333 0.00 0.00 38.98 2.66
244 245 9.994432 GTGCAATAGTTATATGATTTGATAGGC 57.006 33.333 0.00 0.00 0.00 3.93
253 254 9.486497 CAGAGAAGTGTGCAATAGTTATATGAT 57.514 33.333 0.00 0.00 24.48 2.45
267 268 3.914984 TGCCTACAGAGAAGTGTGC 57.085 52.632 0.00 0.00 31.46 4.57
323 324 5.788450 AGAATGGATTTAGATAGGCAGACG 58.212 41.667 0.00 0.00 0.00 4.18
329 330 6.119240 TGCCTGAGAATGGATTTAGATAGG 57.881 41.667 0.00 0.00 0.00 2.57
379 380 1.228769 GCCTTCCCCGGGTTCTTTT 60.229 57.895 21.85 0.00 0.00 2.27
399 400 3.314331 CAGGTGGAGGCTGGTCGT 61.314 66.667 0.00 0.00 0.00 4.34
491 492 4.424711 TTGGCCCGGTCCTCATGC 62.425 66.667 1.80 0.00 0.00 4.06
600 601 4.909305 CCGGTTACAAATAATATTGCTGCG 59.091 41.667 0.00 0.00 33.52 5.18
635 636 3.088532 GCAACATGGTATTTCACAGGGA 58.911 45.455 0.00 0.00 0.00 4.20
640 641 8.620416 TCATACATTAGCAACATGGTATTTCAC 58.380 33.333 0.00 0.00 29.73 3.18
671 672 7.076842 ACTTCATACATTGATGTACACAAGC 57.923 36.000 0.00 0.00 45.11 4.01
699 700 6.260936 AGGAAAAACAACAGAGATGTACACAG 59.739 38.462 0.00 0.00 0.00 3.66
745 746 9.368416 TGCTCTATTCCAAACTGATATACTAGT 57.632 33.333 0.00 0.00 0.00 2.57
746 747 9.853555 CTGCTCTATTCCAAACTGATATACTAG 57.146 37.037 0.00 0.00 0.00 2.57
747 748 9.368416 ACTGCTCTATTCCAAACTGATATACTA 57.632 33.333 0.00 0.00 0.00 1.82
748 749 8.147058 CACTGCTCTATTCCAAACTGATATACT 58.853 37.037 0.00 0.00 0.00 2.12
749 750 8.144478 TCACTGCTCTATTCCAAACTGATATAC 58.856 37.037 0.00 0.00 0.00 1.47
750 751 8.250143 TCACTGCTCTATTCCAAACTGATATA 57.750 34.615 0.00 0.00 0.00 0.86
751 752 7.129457 TCACTGCTCTATTCCAAACTGATAT 57.871 36.000 0.00 0.00 0.00 1.63
752 753 6.544928 TCACTGCTCTATTCCAAACTGATA 57.455 37.500 0.00 0.00 0.00 2.15
798 799 6.295349 CCTCACTACTACAAATCCAACTGAGT 60.295 42.308 0.00 0.00 0.00 3.41
847 848 5.136828 TCCTGGCACATCTTCAACTAAAAA 58.863 37.500 0.00 0.00 38.20 1.94
848 849 4.724399 TCCTGGCACATCTTCAACTAAAA 58.276 39.130 0.00 0.00 38.20 1.52
849 850 4.365514 TCCTGGCACATCTTCAACTAAA 57.634 40.909 0.00 0.00 38.20 1.85
850 851 4.574674 ATCCTGGCACATCTTCAACTAA 57.425 40.909 0.00 0.00 38.20 2.24
851 852 4.574674 AATCCTGGCACATCTTCAACTA 57.425 40.909 0.00 0.00 38.20 2.24
852 853 3.446442 AATCCTGGCACATCTTCAACT 57.554 42.857 0.00 0.00 38.20 3.16
853 854 6.058183 ACTATAATCCTGGCACATCTTCAAC 58.942 40.000 0.00 0.00 38.20 3.18
854 855 6.252599 ACTATAATCCTGGCACATCTTCAA 57.747 37.500 0.00 0.00 38.20 2.69
855 856 5.509670 CGACTATAATCCTGGCACATCTTCA 60.510 44.000 0.00 0.00 38.20 3.02
856 857 4.926238 CGACTATAATCCTGGCACATCTTC 59.074 45.833 0.00 0.00 38.20 2.87
857 858 4.588951 TCGACTATAATCCTGGCACATCTT 59.411 41.667 0.00 0.00 38.20 2.40
858 859 4.152647 TCGACTATAATCCTGGCACATCT 58.847 43.478 0.00 0.00 38.20 2.90
859 860 4.218635 TCTCGACTATAATCCTGGCACATC 59.781 45.833 0.00 0.00 38.20 3.06
860 861 4.021894 GTCTCGACTATAATCCTGGCACAT 60.022 45.833 0.00 0.00 38.20 3.21
861 862 3.318275 GTCTCGACTATAATCCTGGCACA 59.682 47.826 0.00 0.00 0.00 4.57
862 863 3.318275 TGTCTCGACTATAATCCTGGCAC 59.682 47.826 0.00 0.00 0.00 5.01
863 864 3.318275 GTGTCTCGACTATAATCCTGGCA 59.682 47.826 0.00 0.00 0.00 4.92
864 865 3.570550 AGTGTCTCGACTATAATCCTGGC 59.429 47.826 0.00 0.00 0.00 4.85
865 866 5.106475 GCTAGTGTCTCGACTATAATCCTGG 60.106 48.000 0.00 0.00 0.00 4.45
866 867 5.390040 CGCTAGTGTCTCGACTATAATCCTG 60.390 48.000 0.00 0.00 0.00 3.86
870 871 3.752222 CCCGCTAGTGTCTCGACTATAAT 59.248 47.826 1.99 0.00 0.00 1.28
975 988 2.681778 CCGAGAGTGTGGCCTCCT 60.682 66.667 3.32 0.00 31.53 3.69
976 989 3.775654 CCCGAGAGTGTGGCCTCC 61.776 72.222 3.32 0.00 31.53 4.30
992 1005 4.560128 GATTTTGCTTTCCTTTCCACTCC 58.440 43.478 0.00 0.00 0.00 3.85
1052 1066 1.422402 AGGGTTTAGGGTTTTGAGCGA 59.578 47.619 0.00 0.00 0.00 4.93
1096 1116 2.752238 CTGAGGAGGAGACGGCGT 60.752 66.667 14.65 14.65 0.00 5.68
1584 1647 1.138266 AGGAACCGTACATAGCGCATT 59.862 47.619 11.47 0.00 0.00 3.56
1704 1851 5.490139 ACATATTTCTGAATCTTGGTGCG 57.510 39.130 0.00 0.00 0.00 5.34
1785 1939 0.540923 ATCTGGACCTTGCTCTCAGC 59.459 55.000 0.00 0.00 42.82 4.26
1839 1993 4.021981 GCAAAGTGGAGTTTCAGGCTTAAT 60.022 41.667 0.00 0.00 0.00 1.40
1914 2068 2.798976 TGAGGCATGCAACAAACTTC 57.201 45.000 21.36 0.00 0.00 3.01
1929 2083 5.665916 ATGGTTCCTAATTTTGCTTGAGG 57.334 39.130 0.00 0.00 0.00 3.86
2463 2635 6.587273 AGTGAGAAGAGAAGCAGTAGTTTTT 58.413 36.000 0.00 0.00 0.00 1.94
2667 2839 5.310857 CAGACCTTAAATAGAGGGGCCTATT 59.689 44.000 0.84 0.00 40.11 1.73
2738 2912 3.081804 CCTTACCTGCGGTCTTTCAAAT 58.918 45.455 3.45 0.00 37.09 2.32
2748 2922 0.320374 TCTCACAACCTTACCTGCGG 59.680 55.000 0.00 0.00 0.00 5.69
2749 2923 2.069273 CTTCTCACAACCTTACCTGCG 58.931 52.381 0.00 0.00 0.00 5.18
2868 3042 7.989416 AAATCCATGAAACTTGATGCAATTT 57.011 28.000 0.00 0.00 0.00 1.82
2951 3125 8.554490 TGGACTAGAGCCTCTTAAGAATTAAT 57.446 34.615 6.63 0.00 40.24 1.40
3033 3208 8.301252 ACCAAGTGTCAACCTTTACTATTTTT 57.699 30.769 0.00 0.00 0.00 1.94
3355 3534 1.078709 TGCGCTCAGTCATTTGCTAC 58.921 50.000 9.73 0.00 0.00 3.58
3513 3692 3.594232 TGCTTTTTGGGAGGGTATAGGAA 59.406 43.478 0.00 0.00 0.00 3.36
3521 3700 0.392706 GTTGGTGCTTTTTGGGAGGG 59.607 55.000 0.00 0.00 0.00 4.30
3527 3706 0.529555 CCCCGTGTTGGTGCTTTTTG 60.530 55.000 0.00 0.00 35.15 2.44
3545 3724 1.665679 CGTATCACTGTGTTGCCATCC 59.334 52.381 7.79 0.00 0.00 3.51
3548 3727 0.250081 TGCGTATCACTGTGTTGCCA 60.250 50.000 7.79 1.68 0.00 4.92
3557 3736 0.672342 GTCCCCGTATGCGTATCACT 59.328 55.000 1.69 0.00 36.15 3.41
3609 3788 2.519771 ATATACTCGCCGTATCCCCA 57.480 50.000 1.25 0.00 39.48 4.96
3700 3879 6.174049 GCCTTAATGGGGTAGTATTCTGATC 58.826 44.000 0.00 0.00 36.00 2.92
3770 3950 3.460868 GGATTTTGGGCCCTGCGG 61.461 66.667 25.70 0.00 0.00 5.69
3771 3951 3.460868 GGGATTTTGGGCCCTGCG 61.461 66.667 25.70 0.00 41.31 5.18
3799 3979 3.181479 CCTGTGAATCAAATGGGCTGATG 60.181 47.826 0.00 0.00 33.76 3.07
3817 3997 2.897326 GTTTGGCCAGTTTAATCCCTGT 59.103 45.455 5.11 0.00 0.00 4.00
3925 4106 1.813513 GCAGTATCCCATGATTCCGG 58.186 55.000 0.00 0.00 32.18 5.14
3952 4134 4.848562 TGCCAAGATACACTAGGATACG 57.151 45.455 0.00 0.00 46.39 3.06
3960 4142 1.656652 GCGACATGCCAAGATACACT 58.343 50.000 0.00 0.00 37.76 3.55
4022 4204 2.224161 GGAGGGTATCTAGCAAGCACTG 60.224 54.545 0.00 0.00 0.00 3.66
4023 4205 2.043227 GGAGGGTATCTAGCAAGCACT 58.957 52.381 0.00 0.00 0.00 4.40
4091 4273 4.756642 TGTAAGTGCATTGGACTTCTCAAG 59.243 41.667 24.41 0.00 35.30 3.02
4153 4337 7.394077 TGAATGATGTACAGGAAATGAACACAT 59.606 33.333 0.33 0.00 34.41 3.21
4265 4449 6.861065 TGGATCGTAGGAATTTAGAAATGC 57.139 37.500 0.00 0.00 0.00 3.56
4283 4467 2.560105 AGTTTGCAGGCTTCTTTGGATC 59.440 45.455 0.00 0.00 0.00 3.36
4371 4555 7.730784 TGGGAATTGGAAAAACATAAACTCCTA 59.269 33.333 0.00 0.00 0.00 2.94
4913 5106 0.620700 CCTTACCACCCTAGGGCACT 60.621 60.000 28.88 12.19 39.32 4.40
5164 5359 1.617947 CCCTTGACCCTTCTCCCTCG 61.618 65.000 0.00 0.00 0.00 4.63
5248 5444 1.476488 GCACAACCACCACACTTCTTT 59.524 47.619 0.00 0.00 0.00 2.52
5253 5449 0.464373 CTCAGCACAACCACCACACT 60.464 55.000 0.00 0.00 0.00 3.55
5536 5736 1.900545 AACAGTTAGGGCGAGGAGGC 61.901 60.000 0.00 0.00 45.91 4.70
5544 5744 6.738832 CCTTAACTTCTAAACAGTTAGGGC 57.261 41.667 7.75 0.00 43.27 5.19
5547 5747 6.371825 CCCTGCCTTAACTTCTAAACAGTTAG 59.628 42.308 0.00 0.00 37.87 2.34
5558 5758 3.017442 CCTTAAGCCCTGCCTTAACTTC 58.983 50.000 0.00 0.00 34.54 3.01
5560 5760 1.285078 CCCTTAAGCCCTGCCTTAACT 59.715 52.381 0.00 0.00 34.54 2.24
5626 5834 3.496130 ACTTTGACAATTCTCTGTGAGCG 59.504 43.478 0.00 0.00 0.00 5.03
5856 6066 7.659799 TGTACTATACATATCATGGCAACCAAC 59.340 37.037 0.00 0.00 33.09 3.77
5950 6160 6.321181 GTCTTGTTCCCCAGCAAATTATATCA 59.679 38.462 0.00 0.00 0.00 2.15
6273 6490 2.065799 ACAGGAGGAAGACAACCCATT 58.934 47.619 0.00 0.00 0.00 3.16
6323 6540 6.242396 TGCCAGTAGAGGAGAGAGAATATAC 58.758 44.000 0.00 0.00 0.00 1.47
6387 6754 9.853177 ACATGTAAATAGGGAGAAAAGGATAAG 57.147 33.333 0.00 0.00 0.00 1.73
6422 6790 5.299531 GCATGGAGAGGGGAAACTAATAAAC 59.700 44.000 0.00 0.00 0.00 2.01
6586 7235 3.495377 CCGAATTTCACAACCTAACACGA 59.505 43.478 0.00 0.00 0.00 4.35
6603 7252 2.369394 GAAAGGAAGATGGCACCGAAT 58.631 47.619 0.00 0.00 0.00 3.34
6605 7254 0.035439 GGAAAGGAAGATGGCACCGA 60.035 55.000 0.00 0.00 0.00 4.69
6606 7255 0.035056 AGGAAAGGAAGATGGCACCG 60.035 55.000 0.00 0.00 0.00 4.94
6607 7256 2.924421 CTAGGAAAGGAAGATGGCACC 58.076 52.381 0.00 0.00 0.00 5.01
6692 7347 5.173774 ACGTATGATGGACAAATCATTGC 57.826 39.130 5.10 0.00 43.28 3.56
6703 7358 9.226606 ACTTATTCAAAGAAAACGTATGATGGA 57.773 29.630 0.00 0.00 0.00 3.41
6725 7380 1.805955 AGGGGAGGGGGCATATACTTA 59.194 52.381 0.00 0.00 0.00 2.24
6728 7383 2.354261 TTAGGGGAGGGGGCATATAC 57.646 55.000 0.00 0.00 0.00 1.47
6779 7436 0.836606 TGGGTTCTTCTGCTGACACA 59.163 50.000 0.00 0.00 0.00 3.72
7089 7768 2.287427 CGGAGCCTACCTATGTACAACG 60.287 54.545 0.00 0.00 0.00 4.10
7113 7792 7.719633 TGGAACAGATGGACTAATAATAAAGCC 59.280 37.037 0.00 0.00 0.00 4.35
7132 7811 0.732880 CTACCAGCGACGTGGAACAG 60.733 60.000 19.06 10.95 41.80 3.16
7145 7824 5.007234 TCGTTCACAAATTTGTCACTACCAG 59.993 40.000 20.85 7.67 39.91 4.00
7161 7840 4.202060 GGATGATAGAGCTTCTCGTTCACA 60.202 45.833 0.00 0.00 35.36 3.58
7162 7841 4.295051 GGATGATAGAGCTTCTCGTTCAC 58.705 47.826 0.00 0.00 35.36 3.18
7165 7855 2.287909 GCGGATGATAGAGCTTCTCGTT 60.288 50.000 0.00 0.00 35.36 3.85
7181 7871 1.361668 GCGTCAACTGATGTGCGGAT 61.362 55.000 1.12 0.00 33.71 4.18
7216 7907 1.076559 TGATTAGACGGGAGCGGGA 60.077 57.895 0.00 0.00 0.00 5.14
7217 7908 1.107538 TCTGATTAGACGGGAGCGGG 61.108 60.000 0.00 0.00 0.00 6.13
7218 7909 0.962489 ATCTGATTAGACGGGAGCGG 59.038 55.000 0.00 0.00 35.34 5.52
7219 7910 1.609072 TCATCTGATTAGACGGGAGCG 59.391 52.381 0.00 0.00 35.34 5.03
7220 7911 2.625790 AGTCATCTGATTAGACGGGAGC 59.374 50.000 0.00 0.00 37.36 4.70
7221 7912 5.299531 TGTTAGTCATCTGATTAGACGGGAG 59.700 44.000 0.00 0.00 37.36 4.30
7324 8015 1.134401 CGCCCCACAACAGTGAGATAT 60.134 52.381 0.00 0.00 35.24 1.63
7385 8076 0.107508 ATCATCGTTGTCTGGCCAGG 60.108 55.000 32.23 16.01 0.00 4.45
7421 8112 4.478206 AATCATCATTGTCTGGTCGACT 57.522 40.909 16.46 0.00 43.25 4.18
7476 8167 6.436027 TGTATGTTTAGCATTATTGGGGGAA 58.564 36.000 0.00 0.00 38.94 3.97
7479 8170 8.006298 TCTTTGTATGTTTAGCATTATTGGGG 57.994 34.615 0.00 0.00 38.94 4.96
7486 8177 8.227791 CGTGTAACTCTTTGTATGTTTAGCATT 58.772 33.333 0.00 0.00 35.02 3.56
7487 8178 7.623506 GCGTGTAACTCTTTGTATGTTTAGCAT 60.624 37.037 0.00 0.00 36.70 3.79
7488 8179 6.347079 GCGTGTAACTCTTTGTATGTTTAGCA 60.347 38.462 0.00 0.00 31.75 3.49
7489 8180 6.013689 GCGTGTAACTCTTTGTATGTTTAGC 58.986 40.000 0.00 0.00 31.75 3.09
7490 8181 7.115805 TCAGCGTGTAACTCTTTGTATGTTTAG 59.884 37.037 0.00 0.00 22.30 1.85
7492 8183 5.756347 TCAGCGTGTAACTCTTTGTATGTTT 59.244 36.000 0.00 0.00 22.30 2.83
7493 8184 5.176958 GTCAGCGTGTAACTCTTTGTATGTT 59.823 40.000 0.00 0.00 22.30 2.71
7494 8185 4.684703 GTCAGCGTGTAACTCTTTGTATGT 59.315 41.667 0.00 0.00 22.30 2.29
7495 8186 4.923871 AGTCAGCGTGTAACTCTTTGTATG 59.076 41.667 0.00 0.00 22.30 2.39
7498 8189 3.454371 AGTCAGCGTGTAACTCTTTGT 57.546 42.857 0.00 0.00 22.30 2.83
7499 8190 3.921021 CCTAGTCAGCGTGTAACTCTTTG 59.079 47.826 0.00 0.00 22.30 2.77
7501 8192 3.418995 TCCTAGTCAGCGTGTAACTCTT 58.581 45.455 0.00 0.00 22.30 2.85
7502 8193 3.069079 TCCTAGTCAGCGTGTAACTCT 57.931 47.619 0.00 0.00 27.27 3.24
7504 8195 4.803098 AAATCCTAGTCAGCGTGTAACT 57.197 40.909 0.00 0.00 31.75 2.24
7505 8196 5.857822 AAAAATCCTAGTCAGCGTGTAAC 57.142 39.130 0.00 0.00 0.00 2.50
7525 8216 9.921637 GTTTATGATTGGTTAGTGGATGAAAAA 57.078 29.630 0.00 0.00 0.00 1.94
7526 8217 9.308000 AGTTTATGATTGGTTAGTGGATGAAAA 57.692 29.630 0.00 0.00 0.00 2.29
7527 8218 8.877864 AGTTTATGATTGGTTAGTGGATGAAA 57.122 30.769 0.00 0.00 0.00 2.69
7528 8219 8.739039 CAAGTTTATGATTGGTTAGTGGATGAA 58.261 33.333 0.00 0.00 0.00 2.57
7529 8220 8.279970 CAAGTTTATGATTGGTTAGTGGATGA 57.720 34.615 0.00 0.00 0.00 2.92
7829 8520 6.319658 CGAAGTGTAGTACTATACCCCTTGAA 59.680 42.308 22.02 0.00 39.18 2.69
7830 8521 5.824624 CGAAGTGTAGTACTATACCCCTTGA 59.175 44.000 22.02 0.00 39.18 3.02
7845 8536 7.808381 TGAGATACAAGAGAAAACGAAGTGTAG 59.192 37.037 0.00 0.00 45.00 2.74
7848 8539 7.408132 TTGAGATACAAGAGAAAACGAAGTG 57.592 36.000 0.00 0.00 35.68 3.16
7880 8571 8.184848 GGATTTTCTTGCATCTCCTAAGTTTAC 58.815 37.037 0.00 0.00 0.00 2.01
7885 8576 6.827762 AGAAGGATTTTCTTGCATCTCCTAAG 59.172 38.462 0.00 0.00 32.89 2.18
7888 8579 5.190357 AGAAGGATTTTCTTGCATCTCCT 57.810 39.130 0.00 0.00 34.64 3.69
7889 8580 5.648572 CAAGAAGGATTTTCTTGCATCTCC 58.351 41.667 14.47 0.00 45.76 3.71
7926 8617 9.386122 ACCATGGTCTCAGATTTTATATCTAGT 57.614 33.333 13.00 0.00 0.00 2.57
7929 8620 8.943085 AGAACCATGGTCTCAGATTTTATATCT 58.057 33.333 20.07 8.99 0.00 1.98
7930 8621 8.997323 CAGAACCATGGTCTCAGATTTTATATC 58.003 37.037 20.07 6.59 0.00 1.63
7931 8622 8.497745 ACAGAACCATGGTCTCAGATTTTATAT 58.502 33.333 20.07 0.00 0.00 0.86
7932 8623 7.861629 ACAGAACCATGGTCTCAGATTTTATA 58.138 34.615 20.07 0.00 0.00 0.98
7933 8624 6.725364 ACAGAACCATGGTCTCAGATTTTAT 58.275 36.000 20.07 0.00 0.00 1.40
7934 8625 6.013379 AGACAGAACCATGGTCTCAGATTTTA 60.013 38.462 20.07 0.00 37.31 1.52
7935 8626 4.990526 ACAGAACCATGGTCTCAGATTTT 58.009 39.130 20.07 0.00 0.00 1.82
7936 8627 4.288105 AGACAGAACCATGGTCTCAGATTT 59.712 41.667 20.07 0.00 37.31 2.17
7937 8628 3.843027 AGACAGAACCATGGTCTCAGATT 59.157 43.478 20.07 0.00 37.31 2.40
7938 8629 3.197333 CAGACAGAACCATGGTCTCAGAT 59.803 47.826 20.07 0.00 39.75 2.90
7939 8630 2.564504 CAGACAGAACCATGGTCTCAGA 59.435 50.000 20.07 0.00 39.75 3.27
7940 8631 2.564504 TCAGACAGAACCATGGTCTCAG 59.435 50.000 20.07 16.05 39.75 3.35
7941 8632 2.608623 TCAGACAGAACCATGGTCTCA 58.391 47.619 20.07 0.00 39.75 3.27
7942 8633 3.529533 CATCAGACAGAACCATGGTCTC 58.470 50.000 20.07 17.09 39.75 3.36
7943 8634 2.355513 GCATCAGACAGAACCATGGTCT 60.356 50.000 20.07 14.07 42.32 3.85
7944 8635 2.012673 GCATCAGACAGAACCATGGTC 58.987 52.381 20.07 11.88 0.00 4.02
7945 8636 1.632409 AGCATCAGACAGAACCATGGT 59.368 47.619 13.00 13.00 0.00 3.55
7946 8637 2.414994 AGCATCAGACAGAACCATGG 57.585 50.000 11.19 11.19 0.00 3.66
7947 8638 4.511527 ACTTAGCATCAGACAGAACCATG 58.488 43.478 0.00 0.00 0.00 3.66
7948 8639 4.833478 ACTTAGCATCAGACAGAACCAT 57.167 40.909 0.00 0.00 0.00 3.55
7949 8640 4.623932 AACTTAGCATCAGACAGAACCA 57.376 40.909 0.00 0.00 0.00 3.67
7950 8641 5.703130 AGAAAACTTAGCATCAGACAGAACC 59.297 40.000 0.00 0.00 0.00 3.62
7951 8642 6.793492 AGAAAACTTAGCATCAGACAGAAC 57.207 37.500 0.00 0.00 0.00 3.01
7952 8643 7.099764 CCTAGAAAACTTAGCATCAGACAGAA 58.900 38.462 0.00 0.00 0.00 3.02
7953 8644 6.634805 CCTAGAAAACTTAGCATCAGACAGA 58.365 40.000 0.00 0.00 0.00 3.41
7954 8645 5.293079 GCCTAGAAAACTTAGCATCAGACAG 59.707 44.000 0.00 0.00 0.00 3.51
7955 8646 5.046304 AGCCTAGAAAACTTAGCATCAGACA 60.046 40.000 0.00 0.00 0.00 3.41
7956 8647 5.423886 AGCCTAGAAAACTTAGCATCAGAC 58.576 41.667 0.00 0.00 0.00 3.51
7957 8648 5.187772 TGAGCCTAGAAAACTTAGCATCAGA 59.812 40.000 0.00 0.00 0.00 3.27
7958 8649 5.423015 TGAGCCTAGAAAACTTAGCATCAG 58.577 41.667 0.00 0.00 0.00 2.90
7959 8650 5.420725 TGAGCCTAGAAAACTTAGCATCA 57.579 39.130 0.00 0.00 0.00 3.07
7960 8651 6.743575 TTTGAGCCTAGAAAACTTAGCATC 57.256 37.500 0.00 0.00 0.00 3.91
7961 8652 7.709149 AATTTGAGCCTAGAAAACTTAGCAT 57.291 32.000 0.00 0.00 0.00 3.79
7962 8653 7.524717 AAATTTGAGCCTAGAAAACTTAGCA 57.475 32.000 0.00 0.00 0.00 3.49
7963 8654 7.968956 GGTAAATTTGAGCCTAGAAAACTTAGC 59.031 37.037 0.00 0.00 0.00 3.09
7964 8655 8.459635 GGGTAAATTTGAGCCTAGAAAACTTAG 58.540 37.037 0.00 0.00 0.00 2.18
7965 8656 7.945664 TGGGTAAATTTGAGCCTAGAAAACTTA 59.054 33.333 0.00 0.00 35.40 2.24
7966 8657 6.780522 TGGGTAAATTTGAGCCTAGAAAACTT 59.219 34.615 0.00 0.00 35.40 2.66
7967 8658 6.311735 TGGGTAAATTTGAGCCTAGAAAACT 58.688 36.000 0.00 0.00 35.40 2.66
7968 8659 6.584185 TGGGTAAATTTGAGCCTAGAAAAC 57.416 37.500 0.00 0.00 35.40 2.43
7969 8660 8.113462 ACTATGGGTAAATTTGAGCCTAGAAAA 58.887 33.333 0.00 0.00 35.40 2.29
7970 8661 7.556275 CACTATGGGTAAATTTGAGCCTAGAAA 59.444 37.037 0.00 0.00 35.40 2.52
7971 8662 7.054124 CACTATGGGTAAATTTGAGCCTAGAA 58.946 38.462 0.00 0.00 35.40 2.10
7972 8663 6.385759 TCACTATGGGTAAATTTGAGCCTAGA 59.614 38.462 0.00 0.00 35.40 2.43
7973 8664 6.591935 TCACTATGGGTAAATTTGAGCCTAG 58.408 40.000 0.00 9.51 35.40 3.02
7974 8665 6.569127 TCACTATGGGTAAATTTGAGCCTA 57.431 37.500 0.00 0.00 35.40 3.93
7975 8666 5.440610 CTCACTATGGGTAAATTTGAGCCT 58.559 41.667 0.00 0.00 35.40 4.58
7976 8667 4.036852 GCTCACTATGGGTAAATTTGAGCC 59.963 45.833 10.50 9.29 45.67 4.70
7977 8668 5.175090 GCTCACTATGGGTAAATTTGAGC 57.825 43.478 0.00 4.14 45.41 4.26
7978 8669 6.599244 TGAAGCTCACTATGGGTAAATTTGAG 59.401 38.462 0.00 0.00 33.59 3.02
7979 8670 6.480763 TGAAGCTCACTATGGGTAAATTTGA 58.519 36.000 0.00 0.00 0.00 2.69
7980 8671 6.599244 TCTGAAGCTCACTATGGGTAAATTTG 59.401 38.462 0.00 0.00 0.00 2.32
7981 8672 6.721318 TCTGAAGCTCACTATGGGTAAATTT 58.279 36.000 0.00 0.00 0.00 1.82
7982 8673 6.313519 TCTGAAGCTCACTATGGGTAAATT 57.686 37.500 0.00 0.00 0.00 1.82
7983 8674 5.957771 TCTGAAGCTCACTATGGGTAAAT 57.042 39.130 0.00 0.00 0.00 1.40
7984 8675 5.755409 TTCTGAAGCTCACTATGGGTAAA 57.245 39.130 0.00 0.00 0.00 2.01
7985 8676 5.755409 TTTCTGAAGCTCACTATGGGTAA 57.245 39.130 0.00 0.00 0.00 2.85
7986 8677 5.755409 TTTTCTGAAGCTCACTATGGGTA 57.245 39.130 0.00 0.00 0.00 3.69
7987 8678 4.640771 TTTTCTGAAGCTCACTATGGGT 57.359 40.909 0.00 0.00 0.00 4.51
7988 8679 5.435291 AGATTTTCTGAAGCTCACTATGGG 58.565 41.667 0.00 0.00 0.00 4.00
7999 8690 7.244931 TCTTCCTGAAGCCAGATTTTCTGAAG 61.245 42.308 6.09 0.00 41.17 3.02
8000 8691 5.456619 TCTTCCTGAAGCCAGATTTTCTGAA 60.457 40.000 6.09 0.00 41.17 3.02
8001 8692 4.042062 TCTTCCTGAAGCCAGATTTTCTGA 59.958 41.667 6.09 0.00 41.17 3.27
8002 8693 4.330250 TCTTCCTGAAGCCAGATTTTCTG 58.670 43.478 1.94 0.00 43.02 3.02
8003 8694 4.647564 TCTTCCTGAAGCCAGATTTTCT 57.352 40.909 1.94 0.00 43.02 2.52
8004 8695 5.712152 TTTCTTCCTGAAGCCAGATTTTC 57.288 39.130 1.94 0.00 43.02 2.29
8005 8696 6.676990 AATTTCTTCCTGAAGCCAGATTTT 57.323 33.333 1.94 0.00 43.02 1.82
8006 8697 7.093596 CCTTAATTTCTTCCTGAAGCCAGATTT 60.094 37.037 1.94 0.00 43.02 2.17
8007 8698 6.379417 CCTTAATTTCTTCCTGAAGCCAGATT 59.621 38.462 1.94 3.21 43.02 2.40
8008 8699 5.890419 CCTTAATTTCTTCCTGAAGCCAGAT 59.110 40.000 1.94 0.00 43.02 2.90
8009 8700 5.256474 CCTTAATTTCTTCCTGAAGCCAGA 58.744 41.667 1.94 0.00 43.02 3.86
8010 8701 4.142293 GCCTTAATTTCTTCCTGAAGCCAG 60.142 45.833 1.94 0.00 38.28 4.85
8011 8702 3.763897 GCCTTAATTTCTTCCTGAAGCCA 59.236 43.478 1.94 0.00 38.28 4.75
8012 8703 3.763897 TGCCTTAATTTCTTCCTGAAGCC 59.236 43.478 1.94 0.00 38.28 4.35
8013 8704 5.391312 TTGCCTTAATTTCTTCCTGAAGC 57.609 39.130 1.94 0.00 38.28 3.86
8014 8705 7.209475 TGTTTTGCCTTAATTTCTTCCTGAAG 58.791 34.615 0.31 0.31 39.71 3.02
8015 8706 7.069331 TCTGTTTTGCCTTAATTTCTTCCTGAA 59.931 33.333 0.00 0.00 0.00 3.02
8016 8707 6.549364 TCTGTTTTGCCTTAATTTCTTCCTGA 59.451 34.615 0.00 0.00 0.00 3.86
8017 8708 6.748132 TCTGTTTTGCCTTAATTTCTTCCTG 58.252 36.000 0.00 0.00 0.00 3.86
8018 8709 6.777580 TCTCTGTTTTGCCTTAATTTCTTCCT 59.222 34.615 0.00 0.00 0.00 3.36
8019 8710 6.981722 TCTCTGTTTTGCCTTAATTTCTTCC 58.018 36.000 0.00 0.00 0.00 3.46
8020 8711 8.518702 AGATCTCTGTTTTGCCTTAATTTCTTC 58.481 33.333 0.00 0.00 0.00 2.87
8021 8712 8.414629 AGATCTCTGTTTTGCCTTAATTTCTT 57.585 30.769 0.00 0.00 0.00 2.52
8022 8713 9.171877 CTAGATCTCTGTTTTGCCTTAATTTCT 57.828 33.333 0.00 0.00 0.00 2.52
8023 8714 9.167311 TCTAGATCTCTGTTTTGCCTTAATTTC 57.833 33.333 0.00 0.00 0.00 2.17
8024 8715 9.171877 CTCTAGATCTCTGTTTTGCCTTAATTT 57.828 33.333 0.00 0.00 0.00 1.82
8025 8716 8.543774 TCTCTAGATCTCTGTTTTGCCTTAATT 58.456 33.333 0.00 0.00 0.00 1.40
8026 8717 8.083828 TCTCTAGATCTCTGTTTTGCCTTAAT 57.916 34.615 0.00 0.00 0.00 1.40
8027 8718 7.482169 TCTCTAGATCTCTGTTTTGCCTTAA 57.518 36.000 0.00 0.00 0.00 1.85
8028 8719 7.667575 ATCTCTAGATCTCTGTTTTGCCTTA 57.332 36.000 0.00 0.00 0.00 2.69
8029 8720 6.558488 ATCTCTAGATCTCTGTTTTGCCTT 57.442 37.500 0.00 0.00 0.00 4.35
8030 8721 6.267471 CCTATCTCTAGATCTCTGTTTTGCCT 59.733 42.308 0.00 0.00 36.05 4.75
8031 8722 6.454795 CCTATCTCTAGATCTCTGTTTTGCC 58.545 44.000 0.00 0.00 36.05 4.52
8032 8723 6.266558 TCCCTATCTCTAGATCTCTGTTTTGC 59.733 42.308 0.00 0.00 36.05 3.68
8033 8724 7.286546 TGTCCCTATCTCTAGATCTCTGTTTTG 59.713 40.741 0.00 0.00 36.05 2.44
8034 8725 7.358263 TGTCCCTATCTCTAGATCTCTGTTTT 58.642 38.462 0.00 0.00 36.05 2.43
8035 8726 6.916909 TGTCCCTATCTCTAGATCTCTGTTT 58.083 40.000 0.00 0.00 36.05 2.83
8036 8727 6.523035 TGTCCCTATCTCTAGATCTCTGTT 57.477 41.667 0.00 0.00 36.05 3.16
8037 8728 6.274436 TGATGTCCCTATCTCTAGATCTCTGT 59.726 42.308 0.00 0.00 36.05 3.41
8038 8729 6.720309 TGATGTCCCTATCTCTAGATCTCTG 58.280 44.000 0.00 0.00 36.05 3.35
8039 8730 6.968400 TGATGTCCCTATCTCTAGATCTCT 57.032 41.667 0.00 0.00 36.05 3.10
8040 8731 7.888021 TCTTTGATGTCCCTATCTCTAGATCTC 59.112 40.741 0.00 0.00 36.05 2.75
8041 8732 7.764617 TCTTTGATGTCCCTATCTCTAGATCT 58.235 38.462 0.00 0.00 36.05 2.75
8042 8733 8.469200 CATCTTTGATGTCCCTATCTCTAGATC 58.531 40.741 0.00 0.00 36.05 2.75
8043 8734 8.176105 TCATCTTTGATGTCCCTATCTCTAGAT 58.824 37.037 7.33 0.00 38.51 1.98
8044 8735 7.450014 GTCATCTTTGATGTCCCTATCTCTAGA 59.550 40.741 7.33 0.00 33.56 2.43
8045 8736 7.451255 AGTCATCTTTGATGTCCCTATCTCTAG 59.549 40.741 7.33 0.00 33.56 2.43
8046 8737 7.301420 AGTCATCTTTGATGTCCCTATCTCTA 58.699 38.462 7.33 0.00 33.56 2.43
8047 8738 6.142498 AGTCATCTTTGATGTCCCTATCTCT 58.858 40.000 7.33 0.00 33.56 3.10
8048 8739 6.418057 AGTCATCTTTGATGTCCCTATCTC 57.582 41.667 7.33 0.00 33.56 2.75
8049 8740 7.921041 TTAGTCATCTTTGATGTCCCTATCT 57.079 36.000 7.33 0.00 33.56 1.98
8052 8743 8.651389 CCTAATTAGTCATCTTTGATGTCCCTA 58.349 37.037 11.50 4.63 33.56 3.53
8053 8744 7.512992 CCTAATTAGTCATCTTTGATGTCCCT 58.487 38.462 11.50 5.39 33.56 4.20
8054 8745 6.205658 GCCTAATTAGTCATCTTTGATGTCCC 59.794 42.308 11.50 0.00 33.56 4.46
8055 8746 6.995091 AGCCTAATTAGTCATCTTTGATGTCC 59.005 38.462 11.50 1.14 33.56 4.02
8056 8747 7.712639 TGAGCCTAATTAGTCATCTTTGATGTC 59.287 37.037 11.50 2.73 33.56 3.06
8057 8748 7.568349 TGAGCCTAATTAGTCATCTTTGATGT 58.432 34.615 11.50 0.00 33.56 3.06
8058 8749 8.442632 TTGAGCCTAATTAGTCATCTTTGATG 57.557 34.615 11.50 1.45 33.56 3.07
8091 8782 9.920946 AAGACCAAATTAGCCATCTTTATTAGA 57.079 29.630 0.00 0.00 37.28 2.10
8187 8878 1.402107 AAGCCACCCTTTGTGCCTTG 61.402 55.000 0.00 0.00 40.86 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.