Multiple sequence alignment - TraesCS5A01G377900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G377900 chr5A 100.000 3296 0 0 1 3296 575593426 575596721 0.000000e+00 6087
1 TraesCS5A01G377900 chr5A 78.410 1283 248 19 1009 2278 55018467 55019733 0.000000e+00 808
2 TraesCS5A01G377900 chr5A 90.734 518 43 2 1348 1861 33001989 33001473 0.000000e+00 686
3 TraesCS5A01G377900 chr5A 96.000 75 3 0 2225 2299 33001146 33001072 4.470000e-24 122
4 TraesCS5A01G377900 chr5B 93.524 2239 82 32 706 2921 559763267 559765465 0.000000e+00 3273
5 TraesCS5A01G377900 chr5B 77.831 1263 251 19 1044 2293 65279495 65278249 0.000000e+00 754
6 TraesCS5A01G377900 chr5B 92.926 311 16 5 2990 3295 559765494 559765803 6.490000e-122 448
7 TraesCS5A01G377900 chr5B 99.355 155 1 0 506 660 511066975 511067129 6.960000e-72 281
8 TraesCS5A01G377900 chr5B 100.000 150 0 0 506 655 502027194 502027045 9.010000e-71 278
9 TraesCS5A01G377900 chr5B 87.097 186 13 1 2 187 559762229 559762403 2.010000e-47 200
10 TraesCS5A01G377900 chr5D 94.546 1852 59 23 662 2507 457663548 457665363 0.000000e+00 2822
11 TraesCS5A01G377900 chr5D 78.115 1284 250 20 1009 2278 65753744 65755010 0.000000e+00 785
12 TraesCS5A01G377900 chr5D 91.957 373 22 5 2549 2921 457665367 457665731 1.750000e-142 516
13 TraesCS5A01G377900 chr5D 90.164 305 12 3 2993 3296 457665763 457666050 6.670000e-102 381
14 TraesCS5A01G377900 chr5D 85.806 310 12 13 1 281 457662511 457662817 1.920000e-77 300
15 TraesCS5A01G377900 chr5D 95.050 101 5 0 396 496 457663441 457663541 3.400000e-35 159
16 TraesCS5A01G377900 chr2B 90.927 518 44 3 1343 1858 666078736 666079252 0.000000e+00 693
17 TraesCS5A01G377900 chr2B 96.000 75 3 0 2225 2299 545232596 545232670 4.470000e-24 122
18 TraesCS5A01G377900 chr2B 93.333 75 5 0 2225 2299 666079569 666079643 9.670000e-21 111
19 TraesCS5A01G377900 chr1A 90.211 521 48 3 1343 1861 21481610 21482129 0.000000e+00 676
20 TraesCS5A01G377900 chr1A 77.726 642 113 23 1025 1657 521629138 521629758 1.870000e-97 366
21 TraesCS5A01G377900 chr1B 89.883 514 43 2 1348 1861 494066560 494066056 0.000000e+00 652
22 TraesCS5A01G377900 chr1D 77.724 624 109 23 1043 1657 426586991 426587593 4.050000e-94 355
23 TraesCS5A01G377900 chr6A 100.000 154 0 0 506 659 80819964 80820117 5.380000e-73 285
24 TraesCS5A01G377900 chr2D 100.000 153 0 0 505 657 377155889 377156041 1.940000e-72 283
25 TraesCS5A01G377900 chr2D 100.000 150 0 0 506 655 357696997 357697146 9.010000e-71 278
26 TraesCS5A01G377900 chr7B 100.000 151 0 0 506 656 664317035 664317185 2.500000e-71 279
27 TraesCS5A01G377900 chr7B 85.093 161 24 0 993 1153 494219668 494219828 7.320000e-37 165
28 TraesCS5A01G377900 chr3A 100.000 151 0 0 506 656 637291923 637292073 2.500000e-71 279
29 TraesCS5A01G377900 chr7A 99.351 154 0 1 506 659 161728484 161728332 9.010000e-71 278
30 TraesCS5A01G377900 chr6B 100.000 150 0 0 506 655 585570207 585570356 9.010000e-71 278
31 TraesCS5A01G377900 chr3B 83.642 324 18 17 3 302 779641746 779641434 4.190000e-69 272
32 TraesCS5A01G377900 chr4B 97.333 75 2 0 2225 2299 639238543 639238469 9.600000e-26 128
33 TraesCS5A01G377900 chrUn 96.000 75 3 0 2225 2299 213609544 213609470 4.470000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G377900 chr5A 575593426 575596721 3295 False 6087.0 6087 100.000000 1 3296 1 chr5A.!!$F2 3295
1 TraesCS5A01G377900 chr5A 55018467 55019733 1266 False 808.0 808 78.410000 1009 2278 1 chr5A.!!$F1 1269
2 TraesCS5A01G377900 chr5A 33001072 33001989 917 True 404.0 686 93.367000 1348 2299 2 chr5A.!!$R1 951
3 TraesCS5A01G377900 chr5B 559762229 559765803 3574 False 1307.0 3273 91.182333 2 3295 3 chr5B.!!$F2 3293
4 TraesCS5A01G377900 chr5B 65278249 65279495 1246 True 754.0 754 77.831000 1044 2293 1 chr5B.!!$R1 1249
5 TraesCS5A01G377900 chr5D 457662511 457666050 3539 False 835.6 2822 91.504600 1 3296 5 chr5D.!!$F2 3295
6 TraesCS5A01G377900 chr5D 65753744 65755010 1266 False 785.0 785 78.115000 1009 2278 1 chr5D.!!$F1 1269
7 TraesCS5A01G377900 chr2B 666078736 666079643 907 False 402.0 693 92.130000 1343 2299 2 chr2B.!!$F2 956
8 TraesCS5A01G377900 chr1A 21481610 21482129 519 False 676.0 676 90.211000 1343 1861 1 chr1A.!!$F1 518
9 TraesCS5A01G377900 chr1A 521629138 521629758 620 False 366.0 366 77.726000 1025 1657 1 chr1A.!!$F2 632
10 TraesCS5A01G377900 chr1B 494066056 494066560 504 True 652.0 652 89.883000 1348 1861 1 chr1B.!!$R1 513
11 TraesCS5A01G377900 chr1D 426586991 426587593 602 False 355.0 355 77.724000 1043 1657 1 chr1D.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 1128 0.031994 ATATTGCCGCCCGAAAATGC 59.968 50.0 0.00 0.0 0.0 3.56 F
615 1230 0.096454 GCTGGATTTAACCGTCGTGC 59.904 55.0 0.00 0.0 0.0 5.34 F
630 1245 0.315869 CGTGCACAAGTCGTCCAAAC 60.316 55.0 18.64 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 2558 0.318360 TGATGTCGAACGCGTTGAGT 60.318 50.000 31.89 16.76 38.98 3.41 R
2166 2853 2.362503 TCGACGAGCATCAGGGGT 60.363 61.111 0.00 0.00 33.17 4.95 R
2301 3018 3.137544 TCATACATGTACATCCCCCAACC 59.862 47.826 7.96 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 57 2.124403 GCCCATCTCAGGTGGCTG 60.124 66.667 0.00 0.00 40.77 4.85
53 58 2.593978 CCCATCTCAGGTGGCTGG 59.406 66.667 0.00 0.00 35.35 4.85
54 59 1.997311 CCCATCTCAGGTGGCTGGA 60.997 63.158 0.00 0.00 35.35 3.86
55 60 1.351080 CCCATCTCAGGTGGCTGGAT 61.351 60.000 0.00 0.00 35.35 3.41
56 61 1.427809 CCATCTCAGGTGGCTGGATA 58.572 55.000 0.00 0.00 0.00 2.59
57 62 1.347050 CCATCTCAGGTGGCTGGATAG 59.653 57.143 0.00 0.00 0.00 2.08
58 63 2.323599 CATCTCAGGTGGCTGGATAGA 58.676 52.381 0.00 0.00 0.00 1.98
59 64 2.079170 TCTCAGGTGGCTGGATAGAG 57.921 55.000 0.00 0.00 0.00 2.43
60 65 0.392336 CTCAGGTGGCTGGATAGAGC 59.608 60.000 0.00 0.00 38.34 4.09
61 66 1.068753 CAGGTGGCTGGATAGAGCG 59.931 63.158 0.00 0.00 40.13 5.03
62 67 1.075970 AGGTGGCTGGATAGAGCGA 60.076 57.895 0.00 0.00 40.13 4.93
193 234 4.035102 GACTGGAGCCACACCCCC 62.035 72.222 0.00 0.00 0.00 5.40
194 235 4.599500 ACTGGAGCCACACCCCCT 62.599 66.667 0.00 0.00 0.00 4.79
244 290 2.505628 CACCTCGATCAGTGGATCTG 57.494 55.000 11.03 0.00 46.36 2.90
283 369 2.482333 CCTCTCCGCGTCCACTAGG 61.482 68.421 4.92 0.00 0.00 3.02
284 370 3.127352 CTCTCCGCGTCCACTAGGC 62.127 68.421 4.92 0.00 35.60 3.93
289 375 2.412112 GCGTCCACTAGGCGGTAG 59.588 66.667 0.00 0.00 35.76 3.18
290 376 2.117156 GCGTCCACTAGGCGGTAGA 61.117 63.158 0.00 0.00 35.76 2.59
291 377 2.023318 CGTCCACTAGGCGGTAGAG 58.977 63.158 0.00 0.00 32.95 2.43
292 378 1.445716 CGTCCACTAGGCGGTAGAGG 61.446 65.000 0.00 2.79 40.10 3.69
293 379 1.455217 TCCACTAGGCGGTAGAGGC 60.455 63.158 0.00 0.00 38.93 4.70
294 380 1.756950 CCACTAGGCGGTAGAGGCA 60.757 63.158 0.00 0.00 33.28 4.75
295 381 1.736586 CACTAGGCGGTAGAGGCAG 59.263 63.158 0.00 0.00 39.37 4.85
296 382 2.128507 ACTAGGCGGTAGAGGCAGC 61.129 63.158 0.00 0.00 39.37 5.25
297 383 2.043349 TAGGCGGTAGAGGCAGCA 60.043 61.111 0.00 0.00 39.37 4.41
298 384 1.676678 CTAGGCGGTAGAGGCAGCAA 61.677 60.000 0.00 0.00 39.37 3.91
299 385 1.261938 TAGGCGGTAGAGGCAGCAAA 61.262 55.000 0.00 0.00 39.37 3.68
367 932 1.409427 CCTCCTACGCTCTGGGTAAAG 59.591 57.143 0.00 0.00 30.92 1.85
385 950 3.884037 AAGGACAACTTGGTGGAGATT 57.116 42.857 0.00 0.00 38.21 2.40
453 1068 3.418068 GCACGGTGACAGCTCAGC 61.418 66.667 13.29 0.00 40.89 4.26
496 1111 1.344438 CAGCTTCAGCCGGACCATATA 59.656 52.381 5.05 0.00 43.38 0.86
497 1112 2.027745 CAGCTTCAGCCGGACCATATAT 60.028 50.000 5.05 0.00 43.38 0.86
498 1113 2.639839 AGCTTCAGCCGGACCATATATT 59.360 45.455 5.05 0.00 43.38 1.28
499 1114 2.744202 GCTTCAGCCGGACCATATATTG 59.256 50.000 5.05 0.00 34.31 1.90
500 1115 2.472695 TCAGCCGGACCATATATTGC 57.527 50.000 5.05 0.00 0.00 3.56
501 1116 1.003118 TCAGCCGGACCATATATTGCC 59.997 52.381 5.05 0.00 0.00 4.52
502 1117 0.036388 AGCCGGACCATATATTGCCG 60.036 55.000 5.05 9.57 41.53 5.69
503 1118 1.644786 GCCGGACCATATATTGCCGC 61.645 60.000 5.05 5.01 40.59 6.53
504 1119 1.024579 CCGGACCATATATTGCCGCC 61.025 60.000 0.00 0.00 40.59 6.13
505 1120 1.024579 CGGACCATATATTGCCGCCC 61.025 60.000 5.13 0.00 35.17 6.13
506 1121 1.024579 GGACCATATATTGCCGCCCG 61.025 60.000 0.00 0.00 0.00 6.13
507 1122 0.036765 GACCATATATTGCCGCCCGA 60.037 55.000 0.00 0.00 0.00 5.14
508 1123 0.398696 ACCATATATTGCCGCCCGAA 59.601 50.000 0.00 0.00 0.00 4.30
509 1124 1.202830 ACCATATATTGCCGCCCGAAA 60.203 47.619 0.00 0.00 0.00 3.46
510 1125 1.883275 CCATATATTGCCGCCCGAAAA 59.117 47.619 0.00 0.00 0.00 2.29
511 1126 2.491693 CCATATATTGCCGCCCGAAAAT 59.508 45.455 0.00 0.00 0.00 1.82
512 1127 3.500982 CATATATTGCCGCCCGAAAATG 58.499 45.455 0.00 0.00 0.00 2.32
513 1128 0.031994 ATATTGCCGCCCGAAAATGC 59.968 50.000 0.00 0.00 0.00 3.56
514 1129 1.034838 TATTGCCGCCCGAAAATGCT 61.035 50.000 0.00 0.00 0.00 3.79
515 1130 1.887344 ATTGCCGCCCGAAAATGCTT 61.887 50.000 0.00 0.00 0.00 3.91
516 1131 2.202610 GCCGCCCGAAAATGCTTC 60.203 61.111 0.00 0.00 0.00 3.86
517 1132 2.988688 GCCGCCCGAAAATGCTTCA 61.989 57.895 0.00 0.00 0.00 3.02
518 1133 1.154035 CCGCCCGAAAATGCTTCAC 60.154 57.895 0.00 0.00 0.00 3.18
519 1134 1.578926 CGCCCGAAAATGCTTCACA 59.421 52.632 0.00 0.00 0.00 3.58
520 1135 0.729140 CGCCCGAAAATGCTTCACAC 60.729 55.000 0.00 0.00 0.00 3.82
521 1136 0.313672 GCCCGAAAATGCTTCACACA 59.686 50.000 0.00 0.00 0.00 3.72
522 1137 1.930371 GCCCGAAAATGCTTCACACAC 60.930 52.381 0.00 0.00 0.00 3.82
523 1138 1.662876 CCCGAAAATGCTTCACACACG 60.663 52.381 0.00 0.00 0.00 4.49
524 1139 1.262950 CCGAAAATGCTTCACACACGA 59.737 47.619 0.00 0.00 0.00 4.35
525 1140 2.298300 CGAAAATGCTTCACACACGAC 58.702 47.619 0.00 0.00 0.00 4.34
526 1141 2.286125 CGAAAATGCTTCACACACGACA 60.286 45.455 0.00 0.00 0.00 4.35
527 1142 3.291585 GAAAATGCTTCACACACGACAG 58.708 45.455 0.00 0.00 0.00 3.51
528 1143 1.953559 AATGCTTCACACACGACAGT 58.046 45.000 0.00 0.00 0.00 3.55
538 1153 2.966324 CACGACAGTGTTTGGACGA 58.034 52.632 8.15 0.00 43.15 4.20
539 1154 1.497991 CACGACAGTGTTTGGACGAT 58.502 50.000 8.15 0.00 43.15 3.73
540 1155 2.668250 CACGACAGTGTTTGGACGATA 58.332 47.619 8.15 0.00 43.15 2.92
541 1156 3.054166 CACGACAGTGTTTGGACGATAA 58.946 45.455 8.15 0.00 43.15 1.75
542 1157 3.054878 ACGACAGTGTTTGGACGATAAC 58.945 45.455 8.15 0.00 35.67 1.89
543 1158 3.243636 ACGACAGTGTTTGGACGATAACT 60.244 43.478 8.15 0.00 35.67 2.24
544 1159 3.121279 CGACAGTGTTTGGACGATAACTG 59.879 47.826 0.00 0.00 40.61 3.16
545 1160 2.806244 ACAGTGTTTGGACGATAACTGC 59.194 45.455 0.00 0.00 38.84 4.40
546 1161 2.805671 CAGTGTTTGGACGATAACTGCA 59.194 45.455 0.00 0.00 0.00 4.41
547 1162 2.806244 AGTGTTTGGACGATAACTGCAC 59.194 45.455 0.00 0.00 0.00 4.57
548 1163 1.795872 TGTTTGGACGATAACTGCACG 59.204 47.619 0.00 0.00 0.00 5.34
549 1164 2.063266 GTTTGGACGATAACTGCACGA 58.937 47.619 0.24 0.00 0.00 4.35
550 1165 2.665649 TTGGACGATAACTGCACGAT 57.334 45.000 0.24 0.00 0.00 3.73
551 1166 2.203800 TGGACGATAACTGCACGATC 57.796 50.000 0.24 0.00 0.00 3.69
552 1167 1.121240 GGACGATAACTGCACGATCG 58.879 55.000 14.88 14.88 46.12 3.69
553 1168 1.268386 GGACGATAACTGCACGATCGA 60.268 52.381 24.34 0.00 44.04 3.59
554 1169 2.037649 GACGATAACTGCACGATCGAG 58.962 52.381 24.34 16.03 44.04 4.04
555 1170 1.268589 ACGATAACTGCACGATCGAGG 60.269 52.381 24.34 14.40 44.04 4.63
556 1171 1.772182 GATAACTGCACGATCGAGGG 58.228 55.000 24.34 11.76 0.00 4.30
557 1172 1.337071 GATAACTGCACGATCGAGGGA 59.663 52.381 24.34 13.49 0.00 4.20
558 1173 1.399714 TAACTGCACGATCGAGGGAT 58.600 50.000 24.34 5.75 34.96 3.85
559 1174 0.103208 AACTGCACGATCGAGGGATC 59.897 55.000 24.34 1.28 44.63 3.36
560 1175 1.006805 CTGCACGATCGAGGGATCC 60.007 63.158 24.34 1.92 45.16 3.36
561 1176 1.738346 CTGCACGATCGAGGGATCCA 61.738 60.000 24.34 5.89 45.16 3.41
562 1177 1.006805 GCACGATCGAGGGATCCAG 60.007 63.158 24.34 4.35 45.16 3.86
563 1178 1.006805 CACGATCGAGGGATCCAGC 60.007 63.158 24.34 3.36 45.16 4.85
564 1179 2.256764 CGATCGAGGGATCCAGCG 59.743 66.667 15.23 16.10 45.16 5.18
565 1180 2.653702 GATCGAGGGATCCAGCGG 59.346 66.667 20.84 5.52 42.72 5.52
566 1181 3.581687 GATCGAGGGATCCAGCGGC 62.582 68.421 20.84 12.27 42.72 6.53
586 1201 4.383861 CTGCTGGGCTGTGCTCGA 62.384 66.667 0.00 0.00 0.00 4.04
587 1202 4.687215 TGCTGGGCTGTGCTCGAC 62.687 66.667 0.00 0.00 0.00 4.20
588 1203 4.687215 GCTGGGCTGTGCTCGACA 62.687 66.667 0.00 0.00 0.00 4.35
589 1204 2.267006 CTGGGCTGTGCTCGACAT 59.733 61.111 0.00 0.00 32.74 3.06
590 1205 1.376424 CTGGGCTGTGCTCGACATT 60.376 57.895 0.00 0.00 32.74 2.71
591 1206 1.364626 CTGGGCTGTGCTCGACATTC 61.365 60.000 0.00 0.00 32.74 2.67
592 1207 1.078848 GGGCTGTGCTCGACATTCT 60.079 57.895 0.00 0.00 32.74 2.40
593 1208 0.674895 GGGCTGTGCTCGACATTCTT 60.675 55.000 0.00 0.00 32.74 2.52
594 1209 0.723981 GGCTGTGCTCGACATTCTTC 59.276 55.000 0.00 0.00 32.74 2.87
595 1210 0.368227 GCTGTGCTCGACATTCTTCG 59.632 55.000 0.00 0.00 40.53 3.79
596 1211 0.994995 CTGTGCTCGACATTCTTCGG 59.005 55.000 0.00 0.00 39.58 4.30
597 1212 1.014044 TGTGCTCGACATTCTTCGGC 61.014 55.000 0.00 0.00 39.58 5.54
598 1213 0.737715 GTGCTCGACATTCTTCGGCT 60.738 55.000 0.00 0.00 39.58 5.52
599 1214 0.737367 TGCTCGACATTCTTCGGCTG 60.737 55.000 0.00 0.00 39.58 4.85
600 1215 1.424493 GCTCGACATTCTTCGGCTGG 61.424 60.000 0.00 0.00 39.58 4.85
601 1216 0.173481 CTCGACATTCTTCGGCTGGA 59.827 55.000 0.00 0.00 39.58 3.86
602 1217 0.824109 TCGACATTCTTCGGCTGGAT 59.176 50.000 0.00 0.00 39.58 3.41
603 1218 1.207089 TCGACATTCTTCGGCTGGATT 59.793 47.619 0.00 0.00 39.58 3.01
604 1219 2.009774 CGACATTCTTCGGCTGGATTT 58.990 47.619 0.00 0.00 35.26 2.17
605 1220 3.118920 TCGACATTCTTCGGCTGGATTTA 60.119 43.478 0.00 0.00 39.58 1.40
606 1221 3.621268 CGACATTCTTCGGCTGGATTTAA 59.379 43.478 0.00 0.00 35.26 1.52
607 1222 4.494199 CGACATTCTTCGGCTGGATTTAAC 60.494 45.833 0.00 0.00 35.26 2.01
608 1223 3.694566 ACATTCTTCGGCTGGATTTAACC 59.305 43.478 0.00 0.00 0.00 2.85
609 1224 2.018542 TCTTCGGCTGGATTTAACCG 57.981 50.000 0.00 0.00 46.97 4.44
610 1225 1.276989 TCTTCGGCTGGATTTAACCGT 59.723 47.619 0.00 0.00 45.76 4.83
611 1226 1.664151 CTTCGGCTGGATTTAACCGTC 59.336 52.381 0.00 0.00 45.76 4.79
612 1227 0.458889 TCGGCTGGATTTAACCGTCG 60.459 55.000 0.00 0.00 45.76 5.12
613 1228 0.738412 CGGCTGGATTTAACCGTCGT 60.738 55.000 0.00 0.00 40.77 4.34
614 1229 0.725117 GGCTGGATTTAACCGTCGTG 59.275 55.000 0.00 0.00 0.00 4.35
615 1230 0.096454 GCTGGATTTAACCGTCGTGC 59.904 55.000 0.00 0.00 0.00 5.34
616 1231 1.434555 CTGGATTTAACCGTCGTGCA 58.565 50.000 0.00 0.00 0.00 4.57
617 1232 1.127951 CTGGATTTAACCGTCGTGCAC 59.872 52.381 6.82 6.82 0.00 4.57
618 1233 1.149987 GGATTTAACCGTCGTGCACA 58.850 50.000 18.64 0.81 0.00 4.57
619 1234 1.532007 GGATTTAACCGTCGTGCACAA 59.468 47.619 18.64 0.00 0.00 3.33
620 1235 2.412325 GGATTTAACCGTCGTGCACAAG 60.412 50.000 18.64 6.94 0.00 3.16
621 1236 1.654317 TTTAACCGTCGTGCACAAGT 58.346 45.000 18.64 4.92 0.00 3.16
622 1237 1.210870 TTAACCGTCGTGCACAAGTC 58.789 50.000 18.64 2.70 0.00 3.01
623 1238 0.935831 TAACCGTCGTGCACAAGTCG 60.936 55.000 18.64 14.15 0.00 4.18
624 1239 2.657296 CCGTCGTGCACAAGTCGT 60.657 61.111 18.64 0.00 0.00 4.34
625 1240 2.645510 CCGTCGTGCACAAGTCGTC 61.646 63.158 18.64 0.00 0.00 4.20
626 1241 2.645510 CGTCGTGCACAAGTCGTCC 61.646 63.158 18.64 0.00 0.00 4.79
627 1242 1.590525 GTCGTGCACAAGTCGTCCA 60.591 57.895 18.64 0.00 0.00 4.02
628 1243 1.142097 TCGTGCACAAGTCGTCCAA 59.858 52.632 18.64 0.00 0.00 3.53
629 1244 0.460459 TCGTGCACAAGTCGTCCAAA 60.460 50.000 18.64 0.00 0.00 3.28
630 1245 0.315869 CGTGCACAAGTCGTCCAAAC 60.316 55.000 18.64 0.00 0.00 2.93
631 1246 1.014352 GTGCACAAGTCGTCCAAACT 58.986 50.000 13.17 0.00 0.00 2.66
632 1247 1.400494 GTGCACAAGTCGTCCAAACTT 59.600 47.619 13.17 0.00 37.44 2.66
633 1248 2.088423 TGCACAAGTCGTCCAAACTTT 58.912 42.857 0.00 0.00 34.79 2.66
634 1249 3.064271 GTGCACAAGTCGTCCAAACTTTA 59.936 43.478 13.17 0.00 34.79 1.85
635 1250 3.880490 TGCACAAGTCGTCCAAACTTTAT 59.120 39.130 0.00 0.00 34.79 1.40
636 1251 4.024387 TGCACAAGTCGTCCAAACTTTATC 60.024 41.667 0.00 0.00 34.79 1.75
637 1252 4.698276 CACAAGTCGTCCAAACTTTATCG 58.302 43.478 0.00 0.00 34.79 2.92
638 1253 4.210537 CACAAGTCGTCCAAACTTTATCGT 59.789 41.667 0.00 0.00 34.79 3.73
639 1254 4.446719 ACAAGTCGTCCAAACTTTATCGTC 59.553 41.667 0.00 0.00 34.79 4.20
640 1255 3.582780 AGTCGTCCAAACTTTATCGTCC 58.417 45.455 0.00 0.00 0.00 4.79
641 1256 2.669924 GTCGTCCAAACTTTATCGTCCC 59.330 50.000 0.00 0.00 0.00 4.46
642 1257 2.004733 CGTCCAAACTTTATCGTCCCC 58.995 52.381 0.00 0.00 0.00 4.81
643 1258 2.613474 CGTCCAAACTTTATCGTCCCCA 60.613 50.000 0.00 0.00 0.00 4.96
644 1259 3.617284 GTCCAAACTTTATCGTCCCCAT 58.383 45.455 0.00 0.00 0.00 4.00
645 1260 4.681244 CGTCCAAACTTTATCGTCCCCATA 60.681 45.833 0.00 0.00 0.00 2.74
646 1261 4.814771 GTCCAAACTTTATCGTCCCCATAG 59.185 45.833 0.00 0.00 0.00 2.23
647 1262 3.564225 CCAAACTTTATCGTCCCCATAGC 59.436 47.826 0.00 0.00 0.00 2.97
648 1263 4.196193 CAAACTTTATCGTCCCCATAGCA 58.804 43.478 0.00 0.00 0.00 3.49
649 1264 3.470645 ACTTTATCGTCCCCATAGCAC 57.529 47.619 0.00 0.00 0.00 4.40
650 1265 3.039011 ACTTTATCGTCCCCATAGCACT 58.961 45.455 0.00 0.00 0.00 4.40
651 1266 3.181465 ACTTTATCGTCCCCATAGCACTG 60.181 47.826 0.00 0.00 0.00 3.66
652 1267 0.679505 TATCGTCCCCATAGCACTGC 59.320 55.000 0.00 0.00 0.00 4.40
653 1268 1.050988 ATCGTCCCCATAGCACTGCT 61.051 55.000 8.95 8.95 43.41 4.24
654 1269 1.227380 CGTCCCCATAGCACTGCTC 60.227 63.158 6.86 0.00 40.44 4.26
655 1270 1.907739 GTCCCCATAGCACTGCTCA 59.092 57.895 6.86 0.00 40.44 4.26
660 1275 0.666913 CCATAGCACTGCTCATTGCC 59.333 55.000 6.86 0.00 40.44 4.52
683 1298 4.509600 CGCCAATGGAGAAGATCTAGTTTC 59.490 45.833 2.05 0.00 0.00 2.78
686 1301 6.204495 GCCAATGGAGAAGATCTAGTTTCATC 59.796 42.308 2.05 0.00 0.00 2.92
687 1302 6.423302 CCAATGGAGAAGATCTAGTTTCATCG 59.577 42.308 0.00 0.00 0.00 3.84
692 1307 5.587289 AGAAGATCTAGTTTCATCGTGCTC 58.413 41.667 0.00 0.00 0.00 4.26
693 1308 4.991153 AGATCTAGTTTCATCGTGCTCA 57.009 40.909 0.00 0.00 0.00 4.26
694 1309 5.528043 AGATCTAGTTTCATCGTGCTCAT 57.472 39.130 0.00 0.00 0.00 2.90
695 1310 5.911752 AGATCTAGTTTCATCGTGCTCATT 58.088 37.500 0.00 0.00 0.00 2.57
696 1311 7.043961 AGATCTAGTTTCATCGTGCTCATTA 57.956 36.000 0.00 0.00 0.00 1.90
697 1312 7.492524 AGATCTAGTTTCATCGTGCTCATTAA 58.507 34.615 0.00 0.00 0.00 1.40
698 1313 8.147058 AGATCTAGTTTCATCGTGCTCATTAAT 58.853 33.333 0.00 0.00 0.00 1.40
699 1314 8.668510 ATCTAGTTTCATCGTGCTCATTAATT 57.331 30.769 0.00 0.00 0.00 1.40
700 1315 8.492673 TCTAGTTTCATCGTGCTCATTAATTT 57.507 30.769 0.00 0.00 0.00 1.82
701 1316 9.594478 TCTAGTTTCATCGTGCTCATTAATTTA 57.406 29.630 0.00 0.00 0.00 1.40
759 1382 5.047377 GCTCCAATTACCATTTGTTTCTCCA 60.047 40.000 0.00 0.00 0.00 3.86
769 1392 5.801947 CCATTTGTTTCTCCAAAGCGAATAG 59.198 40.000 0.00 0.00 37.71 1.73
789 1412 1.679139 CACAAGAGAAGTGCCAACCA 58.321 50.000 0.00 0.00 0.00 3.67
790 1413 2.233271 CACAAGAGAAGTGCCAACCAT 58.767 47.619 0.00 0.00 0.00 3.55
791 1414 2.227388 CACAAGAGAAGTGCCAACCATC 59.773 50.000 0.00 0.00 0.00 3.51
792 1415 2.158623 ACAAGAGAAGTGCCAACCATCA 60.159 45.455 0.00 0.00 0.00 3.07
793 1416 2.486472 AGAGAAGTGCCAACCATCAG 57.514 50.000 0.00 0.00 0.00 2.90
794 1417 0.807496 GAGAAGTGCCAACCATCAGC 59.193 55.000 0.00 0.00 0.00 4.26
796 1419 0.524862 GAAGTGCCAACCATCAGCAG 59.475 55.000 0.00 0.00 37.15 4.24
809 1432 3.839654 CAGCAGCACTGTTCTTGTG 57.160 52.632 0.00 0.00 41.86 3.33
838 1462 9.646427 ACTAATACAAGAGCTTAGAGACAAAAG 57.354 33.333 0.00 0.00 0.00 2.27
869 1493 2.081462 ACTAGGGCATAAACAACGTGC 58.919 47.619 0.00 0.00 0.00 5.34
870 1494 1.400494 CTAGGGCATAAACAACGTGCC 59.600 52.381 7.06 7.06 44.31 5.01
871 1495 0.538516 AGGGCATAAACAACGTGCCA 60.539 50.000 16.42 0.00 46.63 4.92
873 1497 1.269831 GGGCATAAACAACGTGCCAAA 60.270 47.619 16.42 0.00 46.63 3.28
901 1526 2.093658 CACAGTCGCCCCATATATACCC 60.094 54.545 0.00 0.00 0.00 3.69
933 1558 4.954970 CCACAGCACCACCGCCTT 62.955 66.667 0.00 0.00 0.00 4.35
948 1573 3.017581 CTTGCCCTGCCCTACCCT 61.018 66.667 0.00 0.00 0.00 4.34
966 1596 4.554036 GCCGACCAGAGCATCCCC 62.554 72.222 0.00 0.00 33.66 4.81
967 1597 4.227134 CCGACCAGAGCATCCCCG 62.227 72.222 0.00 0.00 33.66 5.73
968 1598 4.227134 CGACCAGAGCATCCCCGG 62.227 72.222 0.00 0.00 33.66 5.73
969 1599 3.866582 GACCAGAGCATCCCCGGG 61.867 72.222 15.80 15.80 33.66 5.73
1977 2618 2.711922 CCTGTCGGGACTCTTCGGG 61.712 68.421 0.00 0.00 37.23 5.14
2163 2850 2.359169 GGAGATGTCGGAGGTGGCA 61.359 63.158 0.00 0.00 0.00 4.92
2166 2853 2.927856 ATGTCGGAGGTGGCACCA 60.928 61.111 36.28 16.82 41.95 4.17
2301 3018 0.462759 GCGAGGAATTGTGAGGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
2493 3214 8.267620 AGGTCTGAATCTGATGATAATAACCA 57.732 34.615 0.00 0.00 30.93 3.67
2528 3250 9.699410 AATTGGGTTGATCTTTTGACTATATGA 57.301 29.630 0.00 0.00 0.00 2.15
2529 3251 9.699410 ATTGGGTTGATCTTTTGACTATATGAA 57.301 29.630 0.00 0.00 0.00 2.57
2530 3252 8.506168 TGGGTTGATCTTTTGACTATATGAAC 57.494 34.615 0.00 0.00 0.00 3.18
2531 3253 8.106462 TGGGTTGATCTTTTGACTATATGAACA 58.894 33.333 0.00 0.00 0.00 3.18
2532 3254 8.398665 GGGTTGATCTTTTGACTATATGAACAC 58.601 37.037 0.00 0.00 0.00 3.32
2533 3255 8.946085 GGTTGATCTTTTGACTATATGAACACA 58.054 33.333 0.00 0.00 0.00 3.72
2566 3291 3.192422 GGTACACTGCATGCACCAAATTA 59.808 43.478 18.46 0.00 43.58 1.40
2567 3292 4.321601 GGTACACTGCATGCACCAAATTAA 60.322 41.667 18.46 0.00 43.58 1.40
2568 3293 3.916761 ACACTGCATGCACCAAATTAAG 58.083 40.909 18.46 6.25 0.00 1.85
2569 3294 3.255725 CACTGCATGCACCAAATTAAGG 58.744 45.455 18.46 5.44 0.00 2.69
2570 3295 3.056678 CACTGCATGCACCAAATTAAGGA 60.057 43.478 18.46 0.00 0.00 3.36
2571 3296 3.577848 ACTGCATGCACCAAATTAAGGAA 59.422 39.130 18.46 0.00 0.00 3.36
2572 3297 3.924144 TGCATGCACCAAATTAAGGAAC 58.076 40.909 18.46 0.00 0.00 3.62
2592 3317 7.883229 GGAACAACCTAAATTAACACAATGG 57.117 36.000 0.00 0.00 35.41 3.16
2598 3323 9.598517 CAACCTAAATTAACACAATGGCATAAT 57.401 29.630 0.00 0.00 0.00 1.28
2639 3364 5.320549 AGTCCATTCAATCAAAGTGATGC 57.679 39.130 0.00 0.00 37.15 3.91
2644 3370 3.581024 TCAATCAAAGTGATGCTTGCC 57.419 42.857 0.00 0.00 37.15 4.52
2672 3398 5.112686 CAAGGAGATGCTAGGTTGTTAGTC 58.887 45.833 0.00 0.00 0.00 2.59
2675 3401 4.498345 GGAGATGCTAGGTTGTTAGTCGAG 60.498 50.000 0.00 0.00 0.00 4.04
2799 3528 1.859302 ACTCTCTGGAAGGTAGCCTG 58.141 55.000 0.00 0.00 32.13 4.85
2807 3541 2.108250 TGGAAGGTAGCCTGCTTCTTTT 59.892 45.455 0.00 0.00 32.13 2.27
2809 3543 2.498644 AGGTAGCCTGCTTCTTTTCC 57.501 50.000 0.00 0.00 29.57 3.13
2810 3544 1.705186 AGGTAGCCTGCTTCTTTTCCA 59.295 47.619 0.00 0.00 29.57 3.53
2868 3605 4.919754 GCTTTCCAAAGACAATTAGTGCTG 59.080 41.667 3.11 0.00 38.28 4.41
2880 3617 9.672673 AGACAATTAGTGCTGATAAATTAGTGT 57.327 29.630 0.00 0.00 0.00 3.55
2894 3631 8.879342 ATAAATTAGTGTCATGACAGCTACTC 57.121 34.615 28.54 15.44 42.74 2.59
2921 3658 2.557924 TGTTTCCTGCCAGCACAATAAG 59.442 45.455 0.00 0.00 0.00 1.73
2922 3659 1.838112 TTCCTGCCAGCACAATAAGG 58.162 50.000 0.00 0.00 0.00 2.69
2923 3660 0.034186 TCCTGCCAGCACAATAAGGG 60.034 55.000 0.00 0.00 0.00 3.95
2932 3669 2.723273 GCACAATAAGGGCCACTAACT 58.277 47.619 6.18 0.00 42.32 2.24
2933 3670 2.683362 GCACAATAAGGGCCACTAACTC 59.317 50.000 6.18 0.00 42.32 3.01
2934 3671 3.622455 GCACAATAAGGGCCACTAACTCT 60.622 47.826 6.18 0.00 42.32 3.24
2935 3672 4.589908 CACAATAAGGGCCACTAACTCTT 58.410 43.478 6.18 0.00 0.00 2.85
2938 3675 5.044846 ACAATAAGGGCCACTAACTCTTCAT 60.045 40.000 6.18 0.00 0.00 2.57
2939 3676 6.157994 ACAATAAGGGCCACTAACTCTTCATA 59.842 38.462 6.18 0.00 0.00 2.15
2940 3677 6.824958 ATAAGGGCCACTAACTCTTCATAA 57.175 37.500 6.18 0.00 0.00 1.90
2942 3679 5.717119 AGGGCCACTAACTCTTCATAAAT 57.283 39.130 6.18 0.00 0.00 1.40
2944 3681 6.494059 AGGGCCACTAACTCTTCATAAATTT 58.506 36.000 6.18 0.00 0.00 1.82
2946 3683 7.454694 AGGGCCACTAACTCTTCATAAATTTTT 59.545 33.333 6.18 0.00 0.00 1.94
2947 3684 7.545615 GGGCCACTAACTCTTCATAAATTTTTG 59.454 37.037 4.39 0.00 0.00 2.44
2948 3685 7.545615 GGCCACTAACTCTTCATAAATTTTTGG 59.454 37.037 0.00 0.00 0.00 3.28
2949 3686 7.063426 GCCACTAACTCTTCATAAATTTTTGGC 59.937 37.037 8.51 0.00 35.87 4.52
2950 3687 7.273381 CCACTAACTCTTCATAAATTTTTGGCG 59.727 37.037 8.51 1.60 0.00 5.69
2951 3688 7.273381 CACTAACTCTTCATAAATTTTTGGCGG 59.727 37.037 8.51 1.13 0.00 6.13
2952 3689 5.975693 ACTCTTCATAAATTTTTGGCGGA 57.024 34.783 8.51 4.63 0.00 5.54
2953 3690 5.954335 ACTCTTCATAAATTTTTGGCGGAG 58.046 37.500 8.51 13.31 0.00 4.63
2954 3691 5.710099 ACTCTTCATAAATTTTTGGCGGAGA 59.290 36.000 20.48 13.39 0.00 3.71
2955 3692 6.378280 ACTCTTCATAAATTTTTGGCGGAGAT 59.622 34.615 20.48 10.65 0.00 2.75
2956 3693 7.093771 ACTCTTCATAAATTTTTGGCGGAGATT 60.094 33.333 20.48 9.22 0.00 2.40
2957 3694 8.287439 TCTTCATAAATTTTTGGCGGAGATTA 57.713 30.769 8.51 0.00 0.00 1.75
2958 3695 8.912988 TCTTCATAAATTTTTGGCGGAGATTAT 58.087 29.630 8.51 0.00 0.00 1.28
2961 3698 9.959749 TCATAAATTTTTGGCGGAGATTATAAC 57.040 29.630 8.51 0.00 0.00 1.89
2962 3699 9.743057 CATAAATTTTTGGCGGAGATTATAACA 57.257 29.630 0.00 0.00 0.00 2.41
2963 3700 9.965824 ATAAATTTTTGGCGGAGATTATAACAG 57.034 29.630 0.00 0.00 0.00 3.16
2964 3701 7.404671 AATTTTTGGCGGAGATTATAACAGT 57.595 32.000 0.00 0.00 0.00 3.55
2965 3702 6.431198 TTTTTGGCGGAGATTATAACAGTC 57.569 37.500 0.00 0.00 0.00 3.51
2966 3703 5.353394 TTTGGCGGAGATTATAACAGTCT 57.647 39.130 0.00 0.00 0.00 3.24
2967 3704 6.474140 TTTGGCGGAGATTATAACAGTCTA 57.526 37.500 0.00 0.00 0.00 2.59
2968 3705 6.474140 TTGGCGGAGATTATAACAGTCTAA 57.526 37.500 0.00 0.00 0.00 2.10
2969 3706 6.665992 TGGCGGAGATTATAACAGTCTAAT 57.334 37.500 0.00 0.00 0.00 1.73
2970 3707 6.455647 TGGCGGAGATTATAACAGTCTAATG 58.544 40.000 0.00 0.00 0.00 1.90
2971 3708 5.348997 GGCGGAGATTATAACAGTCTAATGC 59.651 44.000 0.00 0.00 0.00 3.56
2972 3709 5.926542 GCGGAGATTATAACAGTCTAATGCA 59.073 40.000 0.00 0.00 0.00 3.96
2973 3710 6.128795 GCGGAGATTATAACAGTCTAATGCAC 60.129 42.308 0.00 0.00 0.00 4.57
2974 3711 6.366332 CGGAGATTATAACAGTCTAATGCACC 59.634 42.308 0.00 0.00 0.00 5.01
2975 3712 7.217200 GGAGATTATAACAGTCTAATGCACCA 58.783 38.462 0.00 0.00 0.00 4.17
2976 3713 7.171678 GGAGATTATAACAGTCTAATGCACCAC 59.828 40.741 0.00 0.00 0.00 4.16
2977 3714 6.701841 AGATTATAACAGTCTAATGCACCACG 59.298 38.462 0.00 0.00 0.00 4.94
2978 3715 1.156736 AACAGTCTAATGCACCACGC 58.843 50.000 0.00 0.00 42.89 5.34
2979 3716 1.014044 ACAGTCTAATGCACCACGCG 61.014 55.000 3.53 3.53 46.97 6.01
2980 3717 1.447838 AGTCTAATGCACCACGCGG 60.448 57.895 12.47 0.00 46.97 6.46
2981 3718 2.817834 TCTAATGCACCACGCGGC 60.818 61.111 12.47 4.24 46.97 6.53
2982 3719 2.819595 CTAATGCACCACGCGGCT 60.820 61.111 12.47 0.00 46.97 5.52
2983 3720 3.099619 CTAATGCACCACGCGGCTG 62.100 63.158 12.47 0.00 46.97 4.85
2988 3725 3.195002 CACCACGCGGCTGGTATG 61.195 66.667 19.70 6.53 43.15 2.39
2991 3728 2.106131 CACGCGGCTGGTATGCTA 59.894 61.111 12.47 0.00 0.00 3.49
2999 3736 0.931005 GCTGGTATGCTACTGAACGC 59.069 55.000 0.00 0.00 0.00 4.84
3025 3762 2.224606 CCAGAAGAAAACTGCAGCTCA 58.775 47.619 15.27 0.00 34.47 4.26
3049 3793 0.537188 CCTGCAACTGTCCCTACGAT 59.463 55.000 0.00 0.00 0.00 3.73
3057 3801 5.538118 CAACTGTCCCTACGATTATGCATA 58.462 41.667 1.16 1.16 0.00 3.14
3062 3807 6.863275 TGTCCCTACGATTATGCATATGTAG 58.137 40.000 22.27 22.27 0.00 2.74
3063 3808 6.127451 TGTCCCTACGATTATGCATATGTAGG 60.127 42.308 30.65 30.65 45.39 3.18
3064 3809 5.955959 TCCCTACGATTATGCATATGTAGGT 59.044 40.000 32.39 20.34 44.70 3.08
3113 3858 8.106247 TGTAATTACTGTCAGGATTTGGAAAC 57.894 34.615 16.33 0.77 0.00 2.78
3202 3961 1.069227 GTGCTGGTCGTTTTCCATGTC 60.069 52.381 0.00 0.00 34.26 3.06
3203 3962 1.234821 GCTGGTCGTTTTCCATGTCA 58.765 50.000 0.00 0.00 34.26 3.58
3204 3963 1.197721 GCTGGTCGTTTTCCATGTCAG 59.802 52.381 0.00 0.00 34.26 3.51
3205 3964 2.494059 CTGGTCGTTTTCCATGTCAGT 58.506 47.619 0.00 0.00 34.26 3.41
3206 3965 2.878406 CTGGTCGTTTTCCATGTCAGTT 59.122 45.455 0.00 0.00 34.26 3.16
3207 3966 2.875933 TGGTCGTTTTCCATGTCAGTTC 59.124 45.455 0.00 0.00 0.00 3.01
3208 3967 2.225727 GGTCGTTTTCCATGTCAGTTCC 59.774 50.000 0.00 0.00 0.00 3.62
3209 3968 3.139077 GTCGTTTTCCATGTCAGTTCCT 58.861 45.455 0.00 0.00 0.00 3.36
3210 3969 3.564225 GTCGTTTTCCATGTCAGTTCCTT 59.436 43.478 0.00 0.00 0.00 3.36
3211 3970 3.813166 TCGTTTTCCATGTCAGTTCCTTC 59.187 43.478 0.00 0.00 0.00 3.46
3212 3971 3.563808 CGTTTTCCATGTCAGTTCCTTCA 59.436 43.478 0.00 0.00 0.00 3.02
3213 3972 4.216257 CGTTTTCCATGTCAGTTCCTTCAT 59.784 41.667 0.00 0.00 0.00 2.57
3214 3973 5.464168 GTTTTCCATGTCAGTTCCTTCATG 58.536 41.667 0.00 0.00 37.83 3.07
3215 3974 4.371624 TTCCATGTCAGTTCCTTCATGT 57.628 40.909 0.00 0.00 36.81 3.21
3248 4007 0.757935 GTGGCCTGATGATTGCCCAT 60.758 55.000 3.32 0.00 44.72 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.274167 AGCACTTCGTTTCCGACCATA 59.726 47.619 0.00 0.00 44.13 2.74
52 57 0.538516 TCTCTGGCCTCGCTCTATCC 60.539 60.000 3.32 0.00 0.00 2.59
53 58 1.202114 CATCTCTGGCCTCGCTCTATC 59.798 57.143 3.32 0.00 0.00 2.08
54 59 1.255882 CATCTCTGGCCTCGCTCTAT 58.744 55.000 3.32 0.00 0.00 1.98
55 60 0.106469 ACATCTCTGGCCTCGCTCTA 60.106 55.000 3.32 0.00 0.00 2.43
56 61 0.975040 AACATCTCTGGCCTCGCTCT 60.975 55.000 3.32 0.00 0.00 4.09
57 62 0.529555 GAACATCTCTGGCCTCGCTC 60.530 60.000 3.32 0.00 0.00 5.03
58 63 1.519719 GAACATCTCTGGCCTCGCT 59.480 57.895 3.32 0.00 0.00 4.93
59 64 1.522580 GGAACATCTCTGGCCTCGC 60.523 63.158 3.32 0.00 0.00 5.03
60 65 0.250234 TTGGAACATCTCTGGCCTCG 59.750 55.000 3.32 0.00 39.30 4.63
61 66 2.570135 GATTGGAACATCTCTGGCCTC 58.430 52.381 3.32 0.00 39.30 4.70
62 67 1.134280 CGATTGGAACATCTCTGGCCT 60.134 52.381 3.32 0.00 39.30 5.19
188 204 4.617595 AAGGGGACTGCAGGGGGT 62.618 66.667 19.93 0.00 42.68 4.95
193 234 3.121030 CGCGAAAGGGGACTGCAG 61.121 66.667 13.48 13.48 42.68 4.41
244 290 0.536006 AGGGGCGCAGAAATATCAGC 60.536 55.000 10.83 0.00 34.94 4.26
283 369 0.938008 GTATTTGCTGCCTCTACCGC 59.062 55.000 0.00 0.00 0.00 5.68
284 370 2.205074 CTGTATTTGCTGCCTCTACCG 58.795 52.381 0.00 0.00 0.00 4.02
285 371 1.943340 GCTGTATTTGCTGCCTCTACC 59.057 52.381 0.00 0.00 0.00 3.18
286 372 2.632377 TGCTGTATTTGCTGCCTCTAC 58.368 47.619 0.00 0.00 33.25 2.59
287 373 3.348647 TTGCTGTATTTGCTGCCTCTA 57.651 42.857 0.00 0.00 33.25 2.43
288 374 2.205022 TTGCTGTATTTGCTGCCTCT 57.795 45.000 0.00 0.00 33.25 3.69
289 375 2.872370 CTTTGCTGTATTTGCTGCCTC 58.128 47.619 0.00 0.00 33.25 4.70
290 376 1.067354 GCTTTGCTGTATTTGCTGCCT 60.067 47.619 0.00 0.00 33.25 4.75
291 377 1.353076 GCTTTGCTGTATTTGCTGCC 58.647 50.000 0.00 0.00 33.25 4.85
292 378 1.353076 GGCTTTGCTGTATTTGCTGC 58.647 50.000 0.00 0.00 0.00 5.25
293 379 1.273048 TGGGCTTTGCTGTATTTGCTG 59.727 47.619 0.00 0.00 0.00 4.41
294 380 1.547372 CTGGGCTTTGCTGTATTTGCT 59.453 47.619 0.00 0.00 0.00 3.91
295 381 2.000429 CTGGGCTTTGCTGTATTTGC 58.000 50.000 0.00 0.00 0.00 3.68
296 382 1.547372 AGCTGGGCTTTGCTGTATTTG 59.453 47.619 0.00 0.00 33.89 2.32
297 383 1.928868 AGCTGGGCTTTGCTGTATTT 58.071 45.000 0.00 0.00 33.89 1.40
298 384 3.677963 AGCTGGGCTTTGCTGTATT 57.322 47.368 0.00 0.00 33.89 1.89
326 412 1.891150 GAATCATCCATCCCCATGCAC 59.109 52.381 0.00 0.00 0.00 4.57
367 932 4.937201 AAAAATCTCCACCAAGTTGTCC 57.063 40.909 1.45 0.00 0.00 4.02
408 1019 8.398878 TCACATGGATATTACATCTACGTGTA 57.601 34.615 0.00 0.00 33.62 2.90
440 1055 2.267324 GAGGGCTGAGCTGTCACC 59.733 66.667 3.72 0.00 0.00 4.02
453 1068 4.742201 CACAGGTCACGGCGAGGG 62.742 72.222 16.62 2.25 0.00 4.30
496 1111 1.887344 AAGCATTTTCGGGCGGCAAT 61.887 50.000 12.47 0.00 34.54 3.56
497 1112 2.485188 GAAGCATTTTCGGGCGGCAA 62.485 55.000 12.47 0.00 34.54 4.52
498 1113 2.988684 AAGCATTTTCGGGCGGCA 60.989 55.556 12.47 0.00 34.54 5.69
499 1114 2.202610 GAAGCATTTTCGGGCGGC 60.203 61.111 0.00 0.00 34.54 6.53
500 1115 1.154035 GTGAAGCATTTTCGGGCGG 60.154 57.895 0.00 0.00 34.54 6.13
501 1116 0.729140 GTGTGAAGCATTTTCGGGCG 60.729 55.000 0.00 0.00 34.54 6.13
502 1117 0.313672 TGTGTGAAGCATTTTCGGGC 59.686 50.000 0.00 0.00 0.00 6.13
503 1118 1.662876 CGTGTGTGAAGCATTTTCGGG 60.663 52.381 0.00 0.00 0.00 5.14
504 1119 1.262950 TCGTGTGTGAAGCATTTTCGG 59.737 47.619 0.00 0.00 0.00 4.30
505 1120 2.286125 TGTCGTGTGTGAAGCATTTTCG 60.286 45.455 0.00 0.00 0.00 3.46
506 1121 3.242739 ACTGTCGTGTGTGAAGCATTTTC 60.243 43.478 0.00 0.00 0.00 2.29
507 1122 2.682856 ACTGTCGTGTGTGAAGCATTTT 59.317 40.909 0.00 0.00 0.00 1.82
508 1123 2.032054 CACTGTCGTGTGTGAAGCATTT 59.968 45.455 0.00 0.00 36.38 2.32
509 1124 1.599071 CACTGTCGTGTGTGAAGCATT 59.401 47.619 0.00 0.00 36.38 3.56
510 1125 1.220529 CACTGTCGTGTGTGAAGCAT 58.779 50.000 0.00 0.00 36.38 3.79
511 1126 2.676744 CACTGTCGTGTGTGAAGCA 58.323 52.632 0.00 0.00 36.38 3.91
520 1135 1.497991 ATCGTCCAAACACTGTCGTG 58.502 50.000 0.00 0.00 46.63 4.35
521 1136 3.054878 GTTATCGTCCAAACACTGTCGT 58.945 45.455 0.00 0.00 0.00 4.34
522 1137 3.121279 CAGTTATCGTCCAAACACTGTCG 59.879 47.826 0.00 0.00 0.00 4.35
523 1138 3.120649 GCAGTTATCGTCCAAACACTGTC 60.121 47.826 0.00 0.00 35.17 3.51
524 1139 2.806244 GCAGTTATCGTCCAAACACTGT 59.194 45.455 0.00 0.00 35.17 3.55
525 1140 2.805671 TGCAGTTATCGTCCAAACACTG 59.194 45.455 0.00 0.00 35.71 3.66
526 1141 2.806244 GTGCAGTTATCGTCCAAACACT 59.194 45.455 0.00 0.00 0.00 3.55
527 1142 2.411031 CGTGCAGTTATCGTCCAAACAC 60.411 50.000 0.00 0.00 0.00 3.32
528 1143 1.795872 CGTGCAGTTATCGTCCAAACA 59.204 47.619 0.00 0.00 0.00 2.83
529 1144 2.063266 TCGTGCAGTTATCGTCCAAAC 58.937 47.619 0.00 0.00 0.00 2.93
530 1145 2.442212 TCGTGCAGTTATCGTCCAAA 57.558 45.000 0.00 0.00 0.00 3.28
531 1146 2.536365 GATCGTGCAGTTATCGTCCAA 58.464 47.619 0.00 0.00 0.00 3.53
532 1147 1.533129 CGATCGTGCAGTTATCGTCCA 60.533 52.381 7.03 0.00 38.12 4.02
533 1148 1.121240 CGATCGTGCAGTTATCGTCC 58.879 55.000 7.03 0.00 38.12 4.79
534 1149 2.037649 CTCGATCGTGCAGTTATCGTC 58.962 52.381 15.94 5.94 42.32 4.20
535 1150 1.268589 CCTCGATCGTGCAGTTATCGT 60.269 52.381 15.94 0.00 42.32 3.73
536 1151 1.399572 CCTCGATCGTGCAGTTATCG 58.600 55.000 15.94 15.56 42.90 2.92
537 1152 1.337071 TCCCTCGATCGTGCAGTTATC 59.663 52.381 15.94 0.00 0.00 1.75
538 1153 1.399714 TCCCTCGATCGTGCAGTTAT 58.600 50.000 15.94 0.00 0.00 1.89
539 1154 1.337071 GATCCCTCGATCGTGCAGTTA 59.663 52.381 15.94 0.00 35.83 2.24
540 1155 0.103208 GATCCCTCGATCGTGCAGTT 59.897 55.000 15.94 2.24 35.83 3.16
541 1156 1.736586 GATCCCTCGATCGTGCAGT 59.263 57.895 15.94 0.00 35.83 4.40
542 1157 1.006805 GGATCCCTCGATCGTGCAG 60.007 63.158 15.94 5.10 45.16 4.41
543 1158 1.738346 CTGGATCCCTCGATCGTGCA 61.738 60.000 15.94 5.85 45.16 4.57
544 1159 1.006805 CTGGATCCCTCGATCGTGC 60.007 63.158 15.94 0.70 45.16 5.34
545 1160 1.006805 GCTGGATCCCTCGATCGTG 60.007 63.158 15.94 12.87 45.16 4.35
546 1161 2.556459 CGCTGGATCCCTCGATCGT 61.556 63.158 15.94 0.00 45.16 3.73
547 1162 2.256764 CGCTGGATCCCTCGATCG 59.743 66.667 9.36 9.36 45.16 3.69
548 1163 2.653702 CCGCTGGATCCCTCGATC 59.346 66.667 20.26 0.00 43.73 3.69
549 1164 3.620785 GCCGCTGGATCCCTCGAT 61.621 66.667 20.26 0.00 0.00 3.59
569 1184 4.383861 TCGAGCACAGCCCAGCAG 62.384 66.667 0.00 0.00 0.00 4.24
570 1185 4.687215 GTCGAGCACAGCCCAGCA 62.687 66.667 0.00 0.00 0.00 4.41
571 1186 3.965539 ATGTCGAGCACAGCCCAGC 62.966 63.158 0.00 0.00 38.85 4.85
572 1187 1.364626 GAATGTCGAGCACAGCCCAG 61.365 60.000 0.00 0.00 38.85 4.45
573 1188 1.375908 GAATGTCGAGCACAGCCCA 60.376 57.895 0.00 0.00 38.85 5.36
574 1189 0.674895 AAGAATGTCGAGCACAGCCC 60.675 55.000 0.00 0.00 38.85 5.19
575 1190 0.723981 GAAGAATGTCGAGCACAGCC 59.276 55.000 0.00 0.00 38.85 4.85
576 1191 0.368227 CGAAGAATGTCGAGCACAGC 59.632 55.000 0.00 0.00 43.86 4.40
577 1192 0.994995 CCGAAGAATGTCGAGCACAG 59.005 55.000 0.00 0.00 43.86 3.66
578 1193 1.014044 GCCGAAGAATGTCGAGCACA 61.014 55.000 0.00 0.00 43.86 4.57
579 1194 0.737715 AGCCGAAGAATGTCGAGCAC 60.738 55.000 9.54 0.00 43.86 4.40
580 1195 0.737367 CAGCCGAAGAATGTCGAGCA 60.737 55.000 9.54 0.00 43.86 4.26
581 1196 1.424493 CCAGCCGAAGAATGTCGAGC 61.424 60.000 0.00 0.00 43.86 5.03
582 1197 0.173481 TCCAGCCGAAGAATGTCGAG 59.827 55.000 0.00 0.00 43.86 4.04
583 1198 0.824109 ATCCAGCCGAAGAATGTCGA 59.176 50.000 0.00 0.00 43.86 4.20
584 1199 1.656652 AATCCAGCCGAAGAATGTCG 58.343 50.000 0.00 0.00 40.77 4.35
585 1200 4.201920 GGTTAAATCCAGCCGAAGAATGTC 60.202 45.833 0.00 0.00 0.00 3.06
586 1201 3.694566 GGTTAAATCCAGCCGAAGAATGT 59.305 43.478 0.00 0.00 0.00 2.71
587 1202 3.242739 CGGTTAAATCCAGCCGAAGAATG 60.243 47.826 0.00 0.00 44.21 2.67
588 1203 2.943033 CGGTTAAATCCAGCCGAAGAAT 59.057 45.455 0.00 0.00 44.21 2.40
589 1204 2.289819 ACGGTTAAATCCAGCCGAAGAA 60.290 45.455 8.87 0.00 44.21 2.52
590 1205 1.276989 ACGGTTAAATCCAGCCGAAGA 59.723 47.619 8.87 0.00 44.21 2.87
591 1206 1.664151 GACGGTTAAATCCAGCCGAAG 59.336 52.381 8.87 0.00 44.21 3.79
592 1207 1.729284 GACGGTTAAATCCAGCCGAA 58.271 50.000 8.87 0.00 44.21 4.30
593 1208 0.458889 CGACGGTTAAATCCAGCCGA 60.459 55.000 8.87 0.00 44.21 5.54
594 1209 0.738412 ACGACGGTTAAATCCAGCCG 60.738 55.000 0.00 0.00 46.53 5.52
595 1210 0.725117 CACGACGGTTAAATCCAGCC 59.275 55.000 0.00 0.00 0.00 4.85
596 1211 0.096454 GCACGACGGTTAAATCCAGC 59.904 55.000 0.00 0.00 0.00 4.85
597 1212 1.127951 GTGCACGACGGTTAAATCCAG 59.872 52.381 0.00 0.00 0.00 3.86
598 1213 1.149987 GTGCACGACGGTTAAATCCA 58.850 50.000 0.00 0.00 0.00 3.41
599 1214 1.149987 TGTGCACGACGGTTAAATCC 58.850 50.000 13.13 0.00 0.00 3.01
600 1215 2.222445 ACTTGTGCACGACGGTTAAATC 59.778 45.455 13.13 0.00 0.00 2.17
601 1216 2.215196 ACTTGTGCACGACGGTTAAAT 58.785 42.857 13.13 0.00 0.00 1.40
602 1217 1.593933 GACTTGTGCACGACGGTTAAA 59.406 47.619 13.13 0.00 0.00 1.52
603 1218 1.210870 GACTTGTGCACGACGGTTAA 58.789 50.000 13.13 0.00 0.00 2.01
604 1219 0.935831 CGACTTGTGCACGACGGTTA 60.936 55.000 13.13 0.00 0.00 2.85
605 1220 2.235016 CGACTTGTGCACGACGGTT 61.235 57.895 13.13 0.00 0.00 4.44
606 1221 2.657296 CGACTTGTGCACGACGGT 60.657 61.111 13.13 5.45 0.00 4.83
607 1222 2.645510 GACGACTTGTGCACGACGG 61.646 63.158 18.23 6.87 0.00 4.79
608 1223 2.645510 GGACGACTTGTGCACGACG 61.646 63.158 13.13 13.55 39.04 5.12
609 1224 1.590525 TGGACGACTTGTGCACGAC 60.591 57.895 13.13 0.00 44.74 4.34
610 1225 2.809010 TGGACGACTTGTGCACGA 59.191 55.556 13.13 9.87 44.74 4.35
614 1229 2.844122 AAAGTTTGGACGACTTGTGC 57.156 45.000 0.00 0.00 37.41 4.57
615 1230 4.210537 ACGATAAAGTTTGGACGACTTGTG 59.789 41.667 14.33 0.00 37.41 3.33
616 1231 4.374399 ACGATAAAGTTTGGACGACTTGT 58.626 39.130 14.33 0.00 37.41 3.16
617 1232 4.143179 GGACGATAAAGTTTGGACGACTTG 60.143 45.833 14.33 0.00 37.41 3.16
618 1233 3.992427 GGACGATAAAGTTTGGACGACTT 59.008 43.478 14.33 0.00 38.92 3.01
619 1234 3.582780 GGACGATAAAGTTTGGACGACT 58.417 45.455 14.33 0.00 0.00 4.18
620 1235 2.669924 GGGACGATAAAGTTTGGACGAC 59.330 50.000 14.33 9.77 0.00 4.34
621 1236 2.354003 GGGGACGATAAAGTTTGGACGA 60.354 50.000 14.33 0.00 0.00 4.20
622 1237 2.004733 GGGGACGATAAAGTTTGGACG 58.995 52.381 0.00 4.14 0.00 4.79
623 1238 3.062122 TGGGGACGATAAAGTTTGGAC 57.938 47.619 0.00 0.00 0.00 4.02
624 1239 4.685030 GCTATGGGGACGATAAAGTTTGGA 60.685 45.833 0.00 0.00 0.00 3.53
625 1240 3.564225 GCTATGGGGACGATAAAGTTTGG 59.436 47.826 0.00 0.00 0.00 3.28
626 1241 4.035208 GTGCTATGGGGACGATAAAGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
627 1242 4.080526 AGTGCTATGGGGACGATAAAGTTT 60.081 41.667 0.00 0.00 41.32 2.66
628 1243 3.454812 AGTGCTATGGGGACGATAAAGTT 59.545 43.478 0.00 0.00 41.32 2.66
629 1244 3.039011 AGTGCTATGGGGACGATAAAGT 58.961 45.455 0.00 0.00 41.32 2.66
630 1245 3.393800 CAGTGCTATGGGGACGATAAAG 58.606 50.000 0.00 0.00 41.32 1.85
631 1246 2.484770 GCAGTGCTATGGGGACGATAAA 60.485 50.000 8.18 0.00 41.32 1.40
632 1247 1.070134 GCAGTGCTATGGGGACGATAA 59.930 52.381 8.18 0.00 41.32 1.75
633 1248 0.679505 GCAGTGCTATGGGGACGATA 59.320 55.000 8.18 0.00 41.32 2.92
634 1249 1.050988 AGCAGTGCTATGGGGACGAT 61.051 55.000 18.11 0.00 41.32 3.73
635 1250 1.676678 GAGCAGTGCTATGGGGACGA 61.677 60.000 19.77 0.00 39.88 4.20
636 1251 1.227380 GAGCAGTGCTATGGGGACG 60.227 63.158 19.77 0.00 39.88 4.79
637 1252 0.471617 ATGAGCAGTGCTATGGGGAC 59.528 55.000 19.77 4.01 39.88 4.46
638 1253 1.134007 CAATGAGCAGTGCTATGGGGA 60.134 52.381 19.77 0.00 39.88 4.81
639 1254 1.315690 CAATGAGCAGTGCTATGGGG 58.684 55.000 19.77 3.18 39.88 4.96
654 1269 0.101759 CTTCTCCATTGGCGGCAATG 59.898 55.000 42.01 42.01 41.02 2.82
655 1270 0.034186 TCTTCTCCATTGGCGGCAAT 60.034 50.000 29.53 29.53 0.00 3.56
660 1275 3.742433 ACTAGATCTTCTCCATTGGCG 57.258 47.619 0.00 0.00 0.00 5.69
668 1283 5.587289 AGCACGATGAAACTAGATCTTCTC 58.413 41.667 0.00 0.00 0.00 2.87
723 1343 3.405170 AATTGGAGCGTAGAAATTGCG 57.595 42.857 0.00 0.00 38.00 4.85
759 1382 4.153117 CACTTCTCTTGTGCTATTCGCTTT 59.847 41.667 0.00 0.00 40.11 3.51
770 1393 1.679139 TGGTTGGCACTTCTCTTGTG 58.321 50.000 0.00 0.00 38.36 3.33
771 1394 2.158623 TGATGGTTGGCACTTCTCTTGT 60.159 45.455 0.00 0.00 0.00 3.16
774 1397 1.612726 GCTGATGGTTGGCACTTCTCT 60.613 52.381 0.00 0.00 0.00 3.10
782 1405 1.975407 AGTGCTGCTGATGGTTGGC 60.975 57.895 0.00 0.00 0.00 4.52
783 1406 4.410225 AGTGCTGCTGATGGTTGG 57.590 55.556 0.00 0.00 0.00 3.77
806 1429 3.981071 AGCTCTTGTATTAGTGGCACA 57.019 42.857 21.41 0.00 0.00 4.57
807 1430 5.661458 TCTAAGCTCTTGTATTAGTGGCAC 58.339 41.667 10.29 10.29 0.00 5.01
808 1431 5.656859 TCTCTAAGCTCTTGTATTAGTGGCA 59.343 40.000 0.00 0.00 0.00 4.92
809 1432 5.980715 GTCTCTAAGCTCTTGTATTAGTGGC 59.019 44.000 0.00 0.00 0.00 5.01
810 1433 7.101652 TGTCTCTAAGCTCTTGTATTAGTGG 57.898 40.000 0.00 0.00 0.00 4.00
822 1445 4.815269 TCTCTGCTTTTGTCTCTAAGCTC 58.185 43.478 8.13 0.00 45.37 4.09
838 1462 3.225235 CCCTAGTGGCCTCTCTGC 58.775 66.667 11.38 0.00 0.00 4.26
869 1493 2.029743 CGACTGTGGTTGGGTTTGG 58.970 57.895 0.00 0.00 0.00 3.28
870 1494 1.358759 GCGACTGTGGTTGGGTTTG 59.641 57.895 0.00 0.00 0.00 2.93
871 1495 1.826487 GGCGACTGTGGTTGGGTTT 60.826 57.895 0.00 0.00 0.00 3.27
873 1497 4.265056 GGGCGACTGTGGTTGGGT 62.265 66.667 0.00 0.00 0.00 4.51
901 1526 1.969589 GTGGTTTACAGGGGGCGTG 60.970 63.158 0.00 0.00 0.00 5.34
931 1556 3.017581 AGGGTAGGGCAGGGCAAG 61.018 66.667 0.00 0.00 0.00 4.01
937 1562 4.162690 GTCGGCAGGGTAGGGCAG 62.163 72.222 0.00 0.00 0.00 4.85
940 1565 3.470888 CTGGTCGGCAGGGTAGGG 61.471 72.222 0.00 0.00 0.00 3.53
941 1566 2.363795 TCTGGTCGGCAGGGTAGG 60.364 66.667 0.00 0.00 0.00 3.18
942 1567 3.082579 GCTCTGGTCGGCAGGGTAG 62.083 68.421 0.00 0.00 0.00 3.18
943 1568 3.075005 GCTCTGGTCGGCAGGGTA 61.075 66.667 0.00 0.00 0.00 3.69
945 1570 3.746949 GATGCTCTGGTCGGCAGGG 62.747 68.421 0.00 0.00 41.88 4.45
948 1573 3.785859 GGGATGCTCTGGTCGGCA 61.786 66.667 0.00 0.00 42.80 5.69
952 1577 3.866582 CCCGGGGATGCTCTGGTC 61.867 72.222 14.71 0.00 0.00 4.02
1371 2001 0.968393 AGACGAGCTGGAGGAAGACC 60.968 60.000 1.44 0.00 0.00 3.85
1917 2558 0.318360 TGATGTCGAACGCGTTGAGT 60.318 50.000 31.89 16.76 38.98 3.41
2163 2850 2.607750 ACGAGCATCAGGGGTGGT 60.608 61.111 0.00 0.00 33.17 4.16
2166 2853 2.362503 TCGACGAGCATCAGGGGT 60.363 61.111 0.00 0.00 33.17 4.95
2301 3018 3.137544 TCATACATGTACATCCCCCAACC 59.862 47.826 7.96 0.00 0.00 3.77
2493 3214 7.919385 AAAGATCAACCCAATTATAAGGCAT 57.081 32.000 0.00 0.00 0.00 4.40
2566 3291 8.147704 CCATTGTGTTAATTTAGGTTGTTCCTT 58.852 33.333 0.00 0.00 45.67 3.36
2568 3293 6.367695 GCCATTGTGTTAATTTAGGTTGTTCC 59.632 38.462 0.00 0.00 0.00 3.62
2569 3294 6.926272 TGCCATTGTGTTAATTTAGGTTGTTC 59.074 34.615 0.00 0.00 0.00 3.18
2570 3295 6.821388 TGCCATTGTGTTAATTTAGGTTGTT 58.179 32.000 0.00 0.00 0.00 2.83
2571 3296 6.412362 TGCCATTGTGTTAATTTAGGTTGT 57.588 33.333 0.00 0.00 0.00 3.32
2572 3297 8.994429 TTATGCCATTGTGTTAATTTAGGTTG 57.006 30.769 0.00 0.00 0.00 3.77
2644 3370 2.996631 ACCTAGCATCTCCTTGCAAAG 58.003 47.619 0.00 0.00 45.23 2.77
2672 3398 1.674441 AGCATCACAAATCATGGCTCG 59.326 47.619 0.00 0.00 0.00 5.03
2675 3401 4.644103 AGTAAGCATCACAAATCATGGC 57.356 40.909 0.00 0.00 0.00 4.40
2745 3474 3.270027 CAACCTGAATCATGTCGCCTAA 58.730 45.455 0.00 0.00 0.00 2.69
2799 3528 6.983890 TGTGGAGTTTTTAATGGAAAAGAAGC 59.016 34.615 0.00 0.00 38.27 3.86
2807 3541 5.999205 ATGCATGTGGAGTTTTTAATGGA 57.001 34.783 0.00 0.00 0.00 3.41
2809 3543 7.623770 GCATTATGCATGTGGAGTTTTTAATG 58.376 34.615 12.80 7.66 44.26 1.90
2810 3544 7.775397 GCATTATGCATGTGGAGTTTTTAAT 57.225 32.000 12.80 0.00 44.26 1.40
2838 3572 1.774254 TGTCTTTGGAAAGCCCTCAGA 59.226 47.619 0.00 0.00 35.99 3.27
2868 3605 8.879342 AGTAGCTGTCATGACACTAATTTATC 57.121 34.615 24.56 15.26 36.21 1.75
2880 3617 2.234661 CACCTTGGAGTAGCTGTCATGA 59.765 50.000 0.00 0.00 0.00 3.07
2910 3647 2.418368 TAGTGGCCCTTATTGTGCTG 57.582 50.000 0.00 0.00 0.00 4.41
2921 3658 6.775594 AAATTTATGAAGAGTTAGTGGCCC 57.224 37.500 0.00 0.00 0.00 5.80
2922 3659 7.545615 CCAAAAATTTATGAAGAGTTAGTGGCC 59.454 37.037 0.00 0.00 0.00 5.36
2923 3660 7.063426 GCCAAAAATTTATGAAGAGTTAGTGGC 59.937 37.037 0.00 0.00 37.69 5.01
2925 3662 7.273381 CCGCCAAAAATTTATGAAGAGTTAGTG 59.727 37.037 0.00 0.00 0.00 2.74
2926 3663 7.175990 TCCGCCAAAAATTTATGAAGAGTTAGT 59.824 33.333 0.00 0.00 0.00 2.24
2929 3666 6.208599 TCTCCGCCAAAAATTTATGAAGAGTT 59.791 34.615 0.00 0.00 0.00 3.01
2930 3667 5.710099 TCTCCGCCAAAAATTTATGAAGAGT 59.290 36.000 0.00 0.00 0.00 3.24
2932 3669 6.773976 ATCTCCGCCAAAAATTTATGAAGA 57.226 33.333 0.00 0.00 0.00 2.87
2935 3672 9.959749 GTTATAATCTCCGCCAAAAATTTATGA 57.040 29.630 0.00 0.00 0.00 2.15
2938 3675 8.962679 ACTGTTATAATCTCCGCCAAAAATTTA 58.037 29.630 0.00 0.00 0.00 1.40
2939 3676 7.836842 ACTGTTATAATCTCCGCCAAAAATTT 58.163 30.769 0.00 0.00 0.00 1.82
2940 3677 7.339466 AGACTGTTATAATCTCCGCCAAAAATT 59.661 33.333 0.00 0.00 0.00 1.82
2942 3679 6.177610 AGACTGTTATAATCTCCGCCAAAAA 58.822 36.000 0.00 0.00 0.00 1.94
2944 3681 5.353394 AGACTGTTATAATCTCCGCCAAA 57.647 39.130 0.00 0.00 0.00 3.28
2946 3683 6.455647 CATTAGACTGTTATAATCTCCGCCA 58.544 40.000 0.00 0.00 0.00 5.69
2947 3684 5.348997 GCATTAGACTGTTATAATCTCCGCC 59.651 44.000 0.00 0.00 0.00 6.13
2948 3685 5.926542 TGCATTAGACTGTTATAATCTCCGC 59.073 40.000 0.00 0.00 0.00 5.54
2949 3686 6.366332 GGTGCATTAGACTGTTATAATCTCCG 59.634 42.308 0.00 0.00 0.00 4.63
2950 3687 7.171678 GTGGTGCATTAGACTGTTATAATCTCC 59.828 40.741 0.00 0.00 0.00 3.71
2951 3688 7.096023 CGTGGTGCATTAGACTGTTATAATCTC 60.096 40.741 0.00 0.00 0.00 2.75
2952 3689 6.701841 CGTGGTGCATTAGACTGTTATAATCT 59.298 38.462 0.00 0.00 0.00 2.40
2953 3690 6.564125 GCGTGGTGCATTAGACTGTTATAATC 60.564 42.308 0.00 0.00 45.45 1.75
2954 3691 5.236478 GCGTGGTGCATTAGACTGTTATAAT 59.764 40.000 0.00 0.00 45.45 1.28
2955 3692 4.569162 GCGTGGTGCATTAGACTGTTATAA 59.431 41.667 0.00 0.00 45.45 0.98
2956 3693 4.116961 GCGTGGTGCATTAGACTGTTATA 58.883 43.478 0.00 0.00 45.45 0.98
2957 3694 2.936498 GCGTGGTGCATTAGACTGTTAT 59.064 45.455 0.00 0.00 45.45 1.89
2958 3695 2.343101 GCGTGGTGCATTAGACTGTTA 58.657 47.619 0.00 0.00 45.45 2.41
2959 3696 1.156736 GCGTGGTGCATTAGACTGTT 58.843 50.000 0.00 0.00 45.45 3.16
2960 3697 1.014044 CGCGTGGTGCATTAGACTGT 61.014 55.000 0.00 0.00 46.97 3.55
2961 3698 1.695893 CCGCGTGGTGCATTAGACTG 61.696 60.000 6.91 0.00 46.97 3.51
2962 3699 1.447838 CCGCGTGGTGCATTAGACT 60.448 57.895 6.91 0.00 46.97 3.24
2963 3700 3.089784 CCGCGTGGTGCATTAGAC 58.910 61.111 6.91 0.00 46.97 2.59
2964 3701 2.817834 GCCGCGTGGTGCATTAGA 60.818 61.111 17.91 0.00 46.97 2.10
2965 3702 2.819595 AGCCGCGTGGTGCATTAG 60.820 61.111 17.91 0.00 46.97 1.73
2966 3703 3.124270 CAGCCGCGTGGTGCATTA 61.124 61.111 17.91 0.00 46.97 1.90
2973 3710 3.439513 TAGCATACCAGCCGCGTGG 62.440 63.158 11.67 11.67 44.01 4.94
2974 3711 2.106131 TAGCATACCAGCCGCGTG 59.894 61.111 4.92 0.00 34.23 5.34
2975 3712 2.106332 GTAGCATACCAGCCGCGT 59.894 61.111 4.92 0.00 34.89 6.01
2976 3713 1.951130 CAGTAGCATACCAGCCGCG 60.951 63.158 0.00 0.00 44.47 6.46
2977 3714 0.179084 TTCAGTAGCATACCAGCCGC 60.179 55.000 0.00 0.00 44.47 6.53
2978 3715 1.571919 GTTCAGTAGCATACCAGCCG 58.428 55.000 0.00 0.00 44.47 5.52
2979 3716 1.571919 CGTTCAGTAGCATACCAGCC 58.428 55.000 0.00 0.00 44.47 4.85
2980 3717 0.931005 GCGTTCAGTAGCATACCAGC 59.069 55.000 0.00 0.00 44.47 4.85
2981 3718 1.137086 AGGCGTTCAGTAGCATACCAG 59.863 52.381 0.00 0.00 44.47 4.00
2982 3719 1.134818 CAGGCGTTCAGTAGCATACCA 60.135 52.381 0.00 0.00 44.47 3.25
2983 3720 1.136305 TCAGGCGTTCAGTAGCATACC 59.864 52.381 0.00 0.00 44.47 2.73
2984 3721 2.579207 TCAGGCGTTCAGTAGCATAC 57.421 50.000 0.00 0.00 43.47 2.39
2985 3722 2.418197 GGTTCAGGCGTTCAGTAGCATA 60.418 50.000 0.00 0.00 34.54 3.14
2986 3723 1.676014 GGTTCAGGCGTTCAGTAGCAT 60.676 52.381 0.00 0.00 34.54 3.79
2987 3724 0.320421 GGTTCAGGCGTTCAGTAGCA 60.320 55.000 0.00 0.00 34.54 3.49
2988 3725 0.320421 TGGTTCAGGCGTTCAGTAGC 60.320 55.000 0.00 0.00 0.00 3.58
2991 3728 0.468226 TTCTGGTTCAGGCGTTCAGT 59.532 50.000 0.00 0.00 31.51 3.41
2999 3736 2.951642 TGCAGTTTTCTTCTGGTTCAGG 59.048 45.455 0.00 0.00 33.98 3.86
3025 3762 2.282040 GGACAGTTGCAGGCAGCT 60.282 61.111 4.71 4.71 45.94 4.24
3049 3793 4.356405 AGCAGCACCTACATATGCATAA 57.644 40.909 11.13 0.00 44.59 1.90
3057 3801 1.285280 TGGGTAAGCAGCACCTACAT 58.715 50.000 2.06 0.00 36.25 2.29
3062 3807 3.066760 GTCATTAATGGGTAAGCAGCACC 59.933 47.826 15.36 0.00 35.15 5.01
3063 3808 3.947834 AGTCATTAATGGGTAAGCAGCAC 59.052 43.478 15.36 2.49 0.00 4.40
3064 3809 4.235079 AGTCATTAATGGGTAAGCAGCA 57.765 40.909 15.36 0.00 0.00 4.41
3113 3858 2.846193 TCGTTCCTTGGTCCTTTTCAG 58.154 47.619 0.00 0.00 0.00 3.02
3202 3961 3.692257 AGGACAGACATGAAGGAACTG 57.308 47.619 0.00 0.00 40.86 3.16
3204 3963 4.008074 TGAAGGACAGACATGAAGGAAC 57.992 45.455 0.00 0.00 0.00 3.62
3248 4007 4.218635 GGACGCAGATGACTCTTCCATATA 59.781 45.833 0.00 0.00 29.63 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.