Multiple sequence alignment - TraesCS5A01G377700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G377700 chr5A 100.000 5741 0 0 1 5741 575521156 575526896 0.000000e+00 10602.0
1 TraesCS5A01G377700 chr5B 91.536 1855 95 23 3913 5740 559681712 559683531 0.000000e+00 2499.0
2 TraesCS5A01G377700 chr5B 91.888 1430 85 18 2473 3881 559680298 559681717 0.000000e+00 1969.0
3 TraesCS5A01G377700 chr5B 93.851 1171 51 14 957 2114 559678028 559679190 0.000000e+00 1744.0
4 TraesCS5A01G377700 chr5B 86.034 580 66 10 2 573 559677154 559677726 4.920000e-170 608.0
5 TraesCS5A01G377700 chr5B 87.805 246 28 2 2236 2480 559679598 559679842 2.620000e-73 287.0
6 TraesCS5A01G377700 chr5B 85.321 109 15 1 711 818 462259647 462259539 1.690000e-20 111.0
7 TraesCS5A01G377700 chr5B 85.577 104 14 1 716 818 652805033 652805136 2.190000e-19 108.0
8 TraesCS5A01G377700 chr5D 91.217 1537 82 17 957 2449 457624214 457625741 0.000000e+00 2041.0
9 TraesCS5A01G377700 chr5D 93.391 923 41 7 4826 5741 457628142 457629051 0.000000e+00 1349.0
10 TraesCS5A01G377700 chr5D 92.259 943 49 7 3913 4839 457627192 457628126 0.000000e+00 1315.0
11 TraesCS5A01G377700 chr5D 93.421 684 33 7 2493 3167 457625738 457626418 0.000000e+00 1003.0
12 TraesCS5A01G377700 chr5D 90.457 744 50 11 3144 3882 457626471 457627198 0.000000e+00 961.0
13 TraesCS5A01G377700 chr5D 84.174 575 58 19 2 573 457623658 457624202 1.420000e-145 527.0
14 TraesCS5A01G377700 chr3D 77.667 300 46 10 663 941 541362463 541362164 4.600000e-36 163.0
15 TraesCS5A01G377700 chr4D 77.119 236 49 5 585 818 474011805 474012037 1.300000e-26 132.0
16 TraesCS5A01G377700 chr3B 88.182 110 13 0 580 689 640078354 640078245 1.300000e-26 132.0
17 TraesCS5A01G377700 chr3B 88.235 68 8 0 712 779 599811072 599811139 1.330000e-11 82.4
18 TraesCS5A01G377700 chr3B 83.721 86 13 1 853 938 829272051 829271967 4.770000e-11 80.5
19 TraesCS5A01G377700 chr4B 87.156 109 13 1 711 818 621649615 621649507 7.810000e-24 122.0
20 TraesCS5A01G377700 chr2B 86.239 109 14 1 711 818 596102236 596102128 3.630000e-22 117.0
21 TraesCS5A01G377700 chr6B 85.321 109 15 1 711 818 245993562 245993670 1.690000e-20 111.0
22 TraesCS5A01G377700 chr6B 75.610 246 38 11 716 941 413466647 413466890 1.020000e-17 102.0
23 TraesCS5A01G377700 chr6D 83.186 113 19 0 577 689 50642882 50642770 2.830000e-18 104.0
24 TraesCS5A01G377700 chr3A 73.841 302 50 16 668 945 114782677 114782381 6.120000e-15 93.5
25 TraesCS5A01G377700 chr3A 88.636 44 5 0 857 900 731848278 731848321 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G377700 chr5A 575521156 575526896 5740 False 10602.000000 10602 100.000000 1 5741 1 chr5A.!!$F1 5740
1 TraesCS5A01G377700 chr5B 559677154 559683531 6377 False 1421.400000 2499 90.222800 2 5740 5 chr5B.!!$F2 5738
2 TraesCS5A01G377700 chr5D 457623658 457629051 5393 False 1199.333333 2041 90.819833 2 5741 6 chr5D.!!$F1 5739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 832 0.035439 CCTGTTTGGCGATAGGGTGT 60.035 55.000 0.00 0.0 0.00 4.16 F
841 865 0.108329 GTCACACCCTACCGTCATGG 60.108 60.000 0.00 0.0 46.41 3.66 F
951 975 0.171007 AAATTTGCCATCGACCGCTG 59.829 50.000 7.05 0.0 0.00 5.18 F
1638 1676 0.449388 GAAAGCTTCGACATGGCTGG 59.551 55.000 0.00 0.0 36.37 4.85 F
2201 2273 1.074072 TGGCAAGTTGGTATGCGGT 59.926 52.632 4.75 0.0 43.47 5.68 F
3626 4511 0.165944 GTGGACATGAACGAAAGCCG 59.834 55.000 0.00 0.0 45.44 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2482 2819 0.324091 AGATTGCCAAAGCCCTCCTG 60.324 55.000 0.00 0.00 38.69 3.86 R
2799 3599 3.904339 GCCCTGGTCCTTGAATCTAGATA 59.096 47.826 5.46 0.00 0.00 1.98 R
2892 3697 6.899393 ATTTGAACTTGCAAGAATACTCCA 57.101 33.333 32.50 14.65 0.00 3.86 R
3335 4217 3.502123 ACAGCTTGCTTAACACCCTTA 57.498 42.857 0.00 0.00 0.00 2.69 R
4021 4907 0.317479 ACACGTACTCTTGGAGTGCC 59.683 55.000 10.06 1.02 43.30 5.01 R
5000 5954 0.591659 GGTTCTTTCTGGCGGTGAAC 59.408 55.000 15.62 15.62 37.04 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.823276 GAGCAGTCGATGGGAGTG 57.177 61.111 0.00 0.00 46.86 3.51
77 78 1.142748 GAGCAGTCGATGGGAGTGG 59.857 63.158 0.00 0.00 44.73 4.00
78 79 2.187946 GCAGTCGATGGGAGTGGG 59.812 66.667 0.00 0.00 44.73 4.61
79 80 2.359169 GCAGTCGATGGGAGTGGGA 61.359 63.158 0.00 0.00 44.73 4.37
80 81 1.819229 CAGTCGATGGGAGTGGGAG 59.181 63.158 0.00 0.00 41.55 4.30
81 82 0.684479 CAGTCGATGGGAGTGGGAGA 60.684 60.000 0.00 0.00 41.55 3.71
82 83 0.396417 AGTCGATGGGAGTGGGAGAG 60.396 60.000 0.00 0.00 0.00 3.20
83 84 0.395862 GTCGATGGGAGTGGGAGAGA 60.396 60.000 0.00 0.00 0.00 3.10
84 85 0.106469 TCGATGGGAGTGGGAGAGAG 60.106 60.000 0.00 0.00 0.00 3.20
85 86 0.106469 CGATGGGAGTGGGAGAGAGA 60.106 60.000 0.00 0.00 0.00 3.10
86 87 1.703411 GATGGGAGTGGGAGAGAGAG 58.297 60.000 0.00 0.00 0.00 3.20
87 88 1.216678 GATGGGAGTGGGAGAGAGAGA 59.783 57.143 0.00 0.00 0.00 3.10
88 89 0.628522 TGGGAGTGGGAGAGAGAGAG 59.371 60.000 0.00 0.00 0.00 3.20
89 90 0.923358 GGGAGTGGGAGAGAGAGAGA 59.077 60.000 0.00 0.00 0.00 3.10
156 173 3.514777 GTGACAGAATGCTCACCGA 57.485 52.632 0.00 0.00 42.53 4.69
168 185 2.050351 CACCGACGACGAGCACTT 60.050 61.111 9.28 0.00 42.66 3.16
170 187 2.254350 CCGACGACGAGCACTTCA 59.746 61.111 9.28 0.00 42.66 3.02
215 232 3.985019 AGACGAACAGAGAGGAGAGTA 57.015 47.619 0.00 0.00 0.00 2.59
234 251 3.319198 GCGACCAAGGGGAGTGGA 61.319 66.667 0.00 0.00 39.62 4.02
239 256 2.261671 CAAGGGGAGTGGACGACG 59.738 66.667 0.00 0.00 0.00 5.12
257 274 2.277072 CCGAGAGAGAGGGGCTCA 59.723 66.667 0.00 0.00 46.45 4.26
270 287 4.830573 GCTCAGGCCCTTTTGACT 57.169 55.556 0.00 0.00 0.00 3.41
271 288 2.261215 GCTCAGGCCCTTTTGACTG 58.739 57.895 0.00 0.00 0.00 3.51
277 294 1.315981 GGCCCTTTTGACTGCCTAGC 61.316 60.000 0.00 0.00 40.77 3.42
326 343 0.099968 GCTGACATACCTGACGCGTA 59.900 55.000 13.97 0.00 0.00 4.42
327 344 1.269102 GCTGACATACCTGACGCGTAT 60.269 52.381 13.97 0.00 0.00 3.06
335 352 1.591594 CTGACGCGTATGCCCGATT 60.592 57.895 13.97 0.00 38.08 3.34
342 359 1.333619 GCGTATGCCCGATTTGTCATT 59.666 47.619 0.00 0.00 33.98 2.57
348 365 3.426615 TGCCCGATTTGTCATTAACCTT 58.573 40.909 0.00 0.00 0.00 3.50
351 368 4.321675 GCCCGATTTGTCATTAACCTTGTT 60.322 41.667 0.00 0.00 0.00 2.83
361 378 9.738832 TTGTCATTAACCTTGTTAAAGCTTAAC 57.261 29.630 0.00 5.68 30.10 2.01
363 380 8.071967 GTCATTAACCTTGTTAAAGCTTAACGT 58.928 33.333 0.00 0.00 30.10 3.99
374 391 1.202557 AGCTTAACGTTTCGGTCACCA 60.203 47.619 5.91 0.00 0.00 4.17
378 395 0.108041 AACGTTTCGGTCACCAGTGT 60.108 50.000 0.00 0.00 0.00 3.55
415 433 9.941325 AGAAACCAAATATGTGATATTTTGCAA 57.059 25.926 0.00 0.00 42.02 4.08
425 443 8.619146 ATGTGATATTTTGCAACGAATTGTAG 57.381 30.769 0.00 0.00 38.17 2.74
432 450 6.804534 TTTGCAACGAATTGTAGAAAACAG 57.195 33.333 0.00 0.00 39.87 3.16
472 490 6.401367 CCGTAACTTCAATACCGGTAGTTTTG 60.401 42.308 21.45 19.12 38.39 2.44
482 500 9.355215 CAATACCGGTAGTTTTGAGCTATATAG 57.645 37.037 20.91 5.30 39.10 1.31
483 501 6.342338 ACCGGTAGTTTTGAGCTATATAGG 57.658 41.667 4.49 0.00 0.00 2.57
486 504 6.208994 CCGGTAGTTTTGAGCTATATAGGACT 59.791 42.308 11.72 0.95 0.00 3.85
487 505 7.306953 CGGTAGTTTTGAGCTATATAGGACTC 58.693 42.308 11.72 10.35 0.00 3.36
491 509 6.611642 AGTTTTGAGCTATATAGGACTCCACA 59.388 38.462 11.72 0.00 0.00 4.17
537 559 7.147672 ACCCTTCTTTCACAAAATCACAAATCT 60.148 33.333 0.00 0.00 0.00 2.40
539 561 9.101655 CCTTCTTTCACAAAATCACAAATCTTT 57.898 29.630 0.00 0.00 0.00 2.52
544 568 6.932051 TCACAAAATCACAAATCTTTTTCGC 58.068 32.000 0.00 0.00 0.00 4.70
573 597 2.299582 CTGCCAAAACATTGATCCACCA 59.700 45.455 0.00 0.00 0.00 4.17
575 599 2.036992 GCCAAAACATTGATCCACCACA 59.963 45.455 0.00 0.00 0.00 4.17
576 600 3.861886 GCCAAAACATTGATCCACCACAG 60.862 47.826 0.00 0.00 0.00 3.66
578 602 2.592102 AACATTGATCCACCACAGCT 57.408 45.000 0.00 0.00 0.00 4.24
579 603 3.719268 AACATTGATCCACCACAGCTA 57.281 42.857 0.00 0.00 0.00 3.32
580 604 3.719268 ACATTGATCCACCACAGCTAA 57.281 42.857 0.00 0.00 0.00 3.09
581 605 4.032960 ACATTGATCCACCACAGCTAAA 57.967 40.909 0.00 0.00 0.00 1.85
583 607 5.018809 ACATTGATCCACCACAGCTAAATT 58.981 37.500 0.00 0.00 0.00 1.82
584 608 5.481473 ACATTGATCCACCACAGCTAAATTT 59.519 36.000 0.00 0.00 0.00 1.82
585 609 6.014327 ACATTGATCCACCACAGCTAAATTTT 60.014 34.615 0.00 0.00 0.00 1.82
586 610 7.178274 ACATTGATCCACCACAGCTAAATTTTA 59.822 33.333 0.00 0.00 0.00 1.52
587 611 7.716799 TTGATCCACCACAGCTAAATTTTAT 57.283 32.000 0.00 0.00 0.00 1.40
589 613 8.995027 TGATCCACCACAGCTAAATTTTATAT 57.005 30.769 0.00 0.00 0.00 0.86
590 614 9.420118 TGATCCACCACAGCTAAATTTTATATT 57.580 29.630 0.00 0.00 0.00 1.28
593 617 9.868277 TCCACCACAGCTAAATTTTATATTTTG 57.132 29.630 0.00 0.00 0.00 2.44
596 620 9.869757 ACCACAGCTAAATTTTATATTTTGACC 57.130 29.630 0.00 0.00 0.00 4.02
626 650 9.449719 TTCTAAAAGTTGATTAAGATCTGACCC 57.550 33.333 0.00 0.00 33.28 4.46
627 651 8.826765 TCTAAAAGTTGATTAAGATCTGACCCT 58.173 33.333 0.00 0.00 33.28 4.34
629 653 8.794335 AAAAGTTGATTAAGATCTGACCCTAC 57.206 34.615 0.00 0.00 33.28 3.18
630 654 7.741554 AAGTTGATTAAGATCTGACCCTACT 57.258 36.000 0.00 0.00 33.28 2.57
631 655 7.741554 AGTTGATTAAGATCTGACCCTACTT 57.258 36.000 0.00 0.00 33.28 2.24
633 657 8.043710 AGTTGATTAAGATCTGACCCTACTTTG 58.956 37.037 0.00 0.00 33.28 2.77
634 658 6.349300 TGATTAAGATCTGACCCTACTTTGC 58.651 40.000 0.00 0.00 33.28 3.68
636 660 4.640771 AAGATCTGACCCTACTTTGCAA 57.359 40.909 0.00 0.00 0.00 4.08
637 661 4.640771 AGATCTGACCCTACTTTGCAAA 57.359 40.909 12.14 12.14 0.00 3.68
638 662 4.985538 AGATCTGACCCTACTTTGCAAAA 58.014 39.130 13.84 0.00 0.00 2.44
639 663 5.385198 AGATCTGACCCTACTTTGCAAAAA 58.615 37.500 13.84 3.58 0.00 1.94
641 665 6.494835 AGATCTGACCCTACTTTGCAAAAATT 59.505 34.615 13.84 3.22 0.00 1.82
642 666 6.478512 TCTGACCCTACTTTGCAAAAATTT 57.521 33.333 13.84 0.70 0.00 1.82
643 667 6.512297 TCTGACCCTACTTTGCAAAAATTTC 58.488 36.000 13.84 5.89 0.00 2.17
644 668 5.285651 TGACCCTACTTTGCAAAAATTTCG 58.714 37.500 13.84 2.79 0.00 3.46
645 669 4.627058 ACCCTACTTTGCAAAAATTTCGG 58.373 39.130 13.84 10.12 0.00 4.30
647 671 4.262249 CCCTACTTTGCAAAAATTTCGGGA 60.262 41.667 13.84 0.00 0.00 5.14
649 673 5.576774 CCTACTTTGCAAAAATTTCGGGATC 59.423 40.000 13.84 0.00 0.00 3.36
650 674 5.213891 ACTTTGCAAAAATTTCGGGATCT 57.786 34.783 13.84 0.00 0.00 2.75
651 675 4.990426 ACTTTGCAAAAATTTCGGGATCTG 59.010 37.500 13.84 0.00 0.00 2.90
652 676 4.862902 TTGCAAAAATTTCGGGATCTGA 57.137 36.364 0.00 0.00 0.00 3.27
653 677 5.404466 TTGCAAAAATTTCGGGATCTGAT 57.596 34.783 0.00 0.00 0.00 2.90
654 678 4.997565 TGCAAAAATTTCGGGATCTGATC 58.002 39.130 9.18 9.18 0.00 2.92
666 690 4.116747 GGATCTGATCCTTATGCTACCG 57.883 50.000 25.93 0.00 46.19 4.02
667 691 3.516615 GATCTGATCCTTATGCTACCGC 58.483 50.000 6.37 0.00 0.00 5.68
668 692 1.618837 TCTGATCCTTATGCTACCGCC 59.381 52.381 0.00 0.00 34.43 6.13
669 693 1.344438 CTGATCCTTATGCTACCGCCA 59.656 52.381 0.00 0.00 34.43 5.69
672 696 0.468226 TCCTTATGCTACCGCCAAGG 59.532 55.000 7.92 7.92 43.49 3.61
674 698 1.583054 CTTATGCTACCGCCAAGGAC 58.417 55.000 0.00 0.00 45.00 3.85
675 699 0.179468 TTATGCTACCGCCAAGGACC 59.821 55.000 0.00 0.00 45.00 4.46
676 700 2.023414 TATGCTACCGCCAAGGACCG 62.023 60.000 0.00 0.00 45.00 4.79
677 701 4.078516 GCTACCGCCAAGGACCGT 62.079 66.667 0.00 0.00 45.00 4.83
678 702 2.125673 CTACCGCCAAGGACCGTG 60.126 66.667 0.00 0.00 45.00 4.94
692 716 4.690719 CGTGGCGGTAGGGTTGCA 62.691 66.667 0.00 0.00 0.00 4.08
693 717 2.045340 GTGGCGGTAGGGTTGCAT 60.045 61.111 0.00 0.00 0.00 3.96
694 718 2.045438 TGGCGGTAGGGTTGCATG 60.045 61.111 0.00 0.00 0.00 4.06
695 719 2.045340 GGCGGTAGGGTTGCATGT 60.045 61.111 0.00 0.00 0.00 3.21
696 720 2.112815 GGCGGTAGGGTTGCATGTC 61.113 63.158 0.00 0.00 0.00 3.06
697 721 2.112815 GCGGTAGGGTTGCATGTCC 61.113 63.158 0.00 0.00 0.00 4.02
698 722 1.602237 CGGTAGGGTTGCATGTCCT 59.398 57.895 7.90 7.90 34.85 3.85
699 723 0.828022 CGGTAGGGTTGCATGTCCTA 59.172 55.000 6.23 6.23 32.46 2.94
701 725 2.327200 GTAGGGTTGCATGTCCTACC 57.673 55.000 20.88 10.82 44.29 3.18
702 726 0.828022 TAGGGTTGCATGTCCTACCG 59.172 55.000 6.23 0.00 32.46 4.02
704 728 0.538118 GGGTTGCATGTCCTACCGTA 59.462 55.000 0.00 0.00 0.00 4.02
705 729 1.065998 GGGTTGCATGTCCTACCGTAA 60.066 52.381 0.00 0.00 0.00 3.18
707 731 3.075884 GGTTGCATGTCCTACCGTAAAA 58.924 45.455 0.00 0.00 0.00 1.52
708 732 3.502979 GGTTGCATGTCCTACCGTAAAAA 59.497 43.478 0.00 0.00 0.00 1.94
733 757 9.825972 AAATTTCGAAGTATGAAACATAGTGTG 57.174 29.630 0.00 0.00 38.08 3.82
734 758 7.956420 TTTCGAAGTATGAAACATAGTGTGT 57.044 32.000 0.00 0.00 44.84 3.72
735 759 6.944557 TCGAAGTATGAAACATAGTGTGTG 57.055 37.500 0.00 0.00 41.14 3.82
736 760 5.347635 TCGAAGTATGAAACATAGTGTGTGC 59.652 40.000 0.00 0.00 41.14 4.57
737 761 5.348724 CGAAGTATGAAACATAGTGTGTGCT 59.651 40.000 0.00 0.00 41.14 4.40
738 762 6.454318 CGAAGTATGAAACATAGTGTGTGCTC 60.454 42.308 0.00 0.00 41.14 4.26
739 763 4.864806 AGTATGAAACATAGTGTGTGCTCG 59.135 41.667 0.00 0.00 41.14 5.03
740 764 1.798223 TGAAACATAGTGTGTGCTCGC 59.202 47.619 0.00 0.00 41.14 5.03
743 767 1.645034 ACATAGTGTGTGCTCGCATC 58.355 50.000 5.19 0.23 40.28 3.91
744 768 1.205655 ACATAGTGTGTGCTCGCATCT 59.794 47.619 5.19 7.33 40.28 2.90
745 769 2.427095 ACATAGTGTGTGCTCGCATCTA 59.573 45.455 5.19 9.08 40.28 1.98
746 770 3.068732 ACATAGTGTGTGCTCGCATCTAT 59.931 43.478 5.19 10.69 40.28 1.98
747 771 2.680312 AGTGTGTGCTCGCATCTATT 57.320 45.000 5.19 0.00 36.45 1.73
748 772 2.274437 AGTGTGTGCTCGCATCTATTG 58.726 47.619 5.19 0.00 36.45 1.90
757 781 2.321213 GCATCTATTGCCGGACACC 58.679 57.895 5.05 0.00 46.15 4.16
758 782 0.179045 GCATCTATTGCCGGACACCT 60.179 55.000 5.05 0.00 46.15 4.00
759 783 1.747206 GCATCTATTGCCGGACACCTT 60.747 52.381 5.05 0.00 46.15 3.50
760 784 1.942657 CATCTATTGCCGGACACCTTG 59.057 52.381 5.05 0.00 0.00 3.61
761 785 0.251916 TCTATTGCCGGACACCTTGG 59.748 55.000 5.05 0.00 0.00 3.61
766 790 3.697747 CCGGACACCTTGGCGGTA 61.698 66.667 0.00 0.00 46.94 4.02
767 791 2.125673 CGGACACCTTGGCGGTAG 60.126 66.667 0.00 0.00 46.94 3.18
768 792 2.267961 GGACACCTTGGCGGTAGG 59.732 66.667 0.00 0.00 46.94 3.18
769 793 2.267961 GACACCTTGGCGGTAGGG 59.732 66.667 5.31 0.00 46.94 3.53
770 794 2.528378 ACACCTTGGCGGTAGGGT 60.528 61.111 5.31 0.00 46.94 4.34
772 796 1.674322 CACCTTGGCGGTAGGGTTG 60.674 63.158 5.31 0.00 46.94 3.77
774 798 0.837260 ACCTTGGCGGTAGGGTTGTA 60.837 55.000 5.31 0.00 46.73 2.41
775 799 0.392060 CCTTGGCGGTAGGGTTGTAC 60.392 60.000 0.00 0.00 0.00 2.90
776 800 0.322322 CTTGGCGGTAGGGTTGTACA 59.678 55.000 0.00 0.00 0.00 2.90
778 802 1.449070 GGCGGTAGGGTTGTACAGC 60.449 63.158 0.27 0.27 41.68 4.40
780 804 0.036671 GCGGTAGGGTTGTACAGCTT 60.037 55.000 9.71 1.58 39.96 3.74
781 805 1.205417 GCGGTAGGGTTGTACAGCTTA 59.795 52.381 9.71 0.66 39.96 3.09
782 806 2.884827 CGGTAGGGTTGTACAGCTTAC 58.115 52.381 9.71 11.62 35.27 2.34
784 808 2.417787 GGTAGGGTTGTACAGCTTACCG 60.418 54.545 19.66 0.00 43.49 4.02
785 809 0.036671 AGGGTTGTACAGCTTACCGC 60.037 55.000 9.71 2.92 39.57 5.68
786 810 1.022982 GGGTTGTACAGCTTACCGCC 61.023 60.000 9.71 0.00 40.39 6.13
789 813 0.672401 TTGTACAGCTTACCGCCTGC 60.672 55.000 0.00 0.00 40.39 4.85
790 814 1.814169 GTACAGCTTACCGCCTGCC 60.814 63.158 0.00 0.00 40.39 4.85
791 815 1.987855 TACAGCTTACCGCCTGCCT 60.988 57.895 0.00 0.00 40.39 4.75
792 816 2.238847 TACAGCTTACCGCCTGCCTG 62.239 60.000 0.00 0.00 40.39 4.85
794 818 2.359975 GCTTACCGCCTGCCTGTT 60.360 61.111 0.00 0.00 0.00 3.16
796 820 1.875963 CTTACCGCCTGCCTGTTTG 59.124 57.895 0.00 0.00 0.00 2.93
797 821 1.586154 CTTACCGCCTGCCTGTTTGG 61.586 60.000 0.00 0.00 39.35 3.28
807 831 2.780595 CCTGTTTGGCGATAGGGTG 58.219 57.895 0.00 0.00 0.00 4.61
808 832 0.035439 CCTGTTTGGCGATAGGGTGT 60.035 55.000 0.00 0.00 0.00 4.16
809 833 1.613255 CCTGTTTGGCGATAGGGTGTT 60.613 52.381 0.00 0.00 0.00 3.32
810 834 2.159382 CTGTTTGGCGATAGGGTGTTT 58.841 47.619 0.00 0.00 0.00 2.83
811 835 2.156098 TGTTTGGCGATAGGGTGTTTC 58.844 47.619 0.00 0.00 0.00 2.78
812 836 1.471287 GTTTGGCGATAGGGTGTTTCC 59.529 52.381 0.00 0.00 0.00 3.13
813 837 0.988832 TTGGCGATAGGGTGTTTCCT 59.011 50.000 0.00 0.00 40.79 3.36
814 838 1.868713 TGGCGATAGGGTGTTTCCTA 58.131 50.000 0.00 0.00 42.91 2.94
815 839 1.483415 TGGCGATAGGGTGTTTCCTAC 59.517 52.381 0.00 0.00 41.69 3.18
816 840 1.202615 GGCGATAGGGTGTTTCCTACC 60.203 57.143 0.00 0.00 41.69 3.18
817 841 1.537562 GCGATAGGGTGTTTCCTACCG 60.538 57.143 0.60 0.60 46.50 4.02
818 842 1.068127 CGATAGGGTGTTTCCTACCGG 59.932 57.143 0.00 0.00 41.52 5.28
820 844 1.266867 TAGGGTGTTTCCTACCGGGC 61.267 60.000 6.32 0.00 39.14 6.13
821 845 2.599757 GGGTGTTTCCTACCGGGCT 61.600 63.158 6.32 0.00 39.14 5.19
822 846 1.376812 GGTGTTTCCTACCGGGCTG 60.377 63.158 6.32 0.00 34.39 4.85
824 848 0.672711 GTGTTTCCTACCGGGCTGTC 60.673 60.000 6.32 0.00 34.39 3.51
825 849 1.122632 TGTTTCCTACCGGGCTGTCA 61.123 55.000 6.32 0.00 34.39 3.58
829 853 2.264794 CTACCGGGCTGTCACACC 59.735 66.667 6.32 0.00 0.00 4.16
830 854 3.310860 CTACCGGGCTGTCACACCC 62.311 68.421 6.32 5.57 43.25 4.61
831 855 3.839046 TACCGGGCTGTCACACCCT 62.839 63.158 6.32 0.00 44.63 4.34
832 856 2.444004 TACCGGGCTGTCACACCCTA 62.444 60.000 6.32 0.00 44.63 3.53
833 857 2.264794 CGGGCTGTCACACCCTAC 59.735 66.667 12.14 0.00 44.63 3.18
834 858 2.669240 GGGCTGTCACACCCTACC 59.331 66.667 7.92 0.00 43.36 3.18
835 859 2.264794 GGCTGTCACACCCTACCG 59.735 66.667 0.00 0.00 0.00 4.02
837 861 1.080025 GCTGTCACACCCTACCGTC 60.080 63.158 0.00 0.00 0.00 4.79
838 862 1.812686 GCTGTCACACCCTACCGTCA 61.813 60.000 0.00 0.00 0.00 4.35
839 863 0.895530 CTGTCACACCCTACCGTCAT 59.104 55.000 0.00 0.00 0.00 3.06
840 864 0.606096 TGTCACACCCTACCGTCATG 59.394 55.000 0.00 0.00 0.00 3.07
841 865 0.108329 GTCACACCCTACCGTCATGG 60.108 60.000 0.00 0.00 46.41 3.66
842 866 0.251877 TCACACCCTACCGTCATGGA 60.252 55.000 0.00 0.00 42.00 3.41
844 868 1.262640 ACACCCTACCGTCATGGACC 61.263 60.000 0.00 0.00 42.00 4.46
845 869 0.976073 CACCCTACCGTCATGGACCT 60.976 60.000 0.00 0.00 42.00 3.85
846 870 0.252558 ACCCTACCGTCATGGACCTT 60.253 55.000 0.00 0.00 42.00 3.50
847 871 0.178068 CCCTACCGTCATGGACCTTG 59.822 60.000 0.80 0.80 42.00 3.61
848 872 1.191535 CCTACCGTCATGGACCTTGA 58.808 55.000 5.98 5.98 42.00 3.02
849 873 1.134788 CCTACCGTCATGGACCTTGAC 60.135 57.143 24.18 24.18 42.00 3.18
862 886 2.227194 ACCTTGACGGTAGCAAAAAGG 58.773 47.619 12.53 12.53 46.73 3.11
864 888 2.225727 CCTTGACGGTAGCAAAAAGGTC 59.774 50.000 7.87 0.00 31.49 3.85
866 890 2.489971 TGACGGTAGCAAAAAGGTCAG 58.510 47.619 0.00 0.00 31.45 3.51
867 891 2.103432 TGACGGTAGCAAAAAGGTCAGA 59.897 45.455 0.00 0.00 31.45 3.27
868 892 3.244422 TGACGGTAGCAAAAAGGTCAGAT 60.244 43.478 0.00 0.00 31.45 2.90
870 894 3.751698 ACGGTAGCAAAAAGGTCAGATTC 59.248 43.478 0.00 0.00 0.00 2.52
872 896 3.127030 GGTAGCAAAAAGGTCAGATTCCG 59.873 47.826 0.00 0.00 0.00 4.30
873 897 3.140325 AGCAAAAAGGTCAGATTCCGA 57.860 42.857 0.00 0.00 0.00 4.55
874 898 3.486383 AGCAAAAAGGTCAGATTCCGAA 58.514 40.909 0.00 0.00 0.00 4.30
875 899 3.888930 AGCAAAAAGGTCAGATTCCGAAA 59.111 39.130 0.00 0.00 0.00 3.46
876 900 4.524328 AGCAAAAAGGTCAGATTCCGAAAT 59.476 37.500 0.00 0.00 0.00 2.17
877 901 5.011023 AGCAAAAAGGTCAGATTCCGAAATT 59.989 36.000 0.00 0.00 0.00 1.82
878 902 5.696270 GCAAAAAGGTCAGATTCCGAAATTT 59.304 36.000 0.00 0.00 0.00 1.82
879 903 6.202762 GCAAAAAGGTCAGATTCCGAAATTTT 59.797 34.615 0.00 0.00 0.00 1.82
880 904 7.254761 GCAAAAAGGTCAGATTCCGAAATTTTT 60.255 33.333 0.00 0.00 0.00 1.94
881 905 9.255304 CAAAAAGGTCAGATTCCGAAATTTTTA 57.745 29.630 0.00 0.00 0.00 1.52
882 906 8.812147 AAAAGGTCAGATTCCGAAATTTTTAC 57.188 30.769 0.00 0.00 0.00 2.01
883 907 7.519032 AAGGTCAGATTCCGAAATTTTTACA 57.481 32.000 0.00 0.00 0.00 2.41
884 908 7.519032 AGGTCAGATTCCGAAATTTTTACAA 57.481 32.000 0.00 0.00 0.00 2.41
885 909 7.947282 AGGTCAGATTCCGAAATTTTTACAAA 58.053 30.769 0.00 0.00 0.00 2.83
886 910 7.865889 AGGTCAGATTCCGAAATTTTTACAAAC 59.134 33.333 0.00 0.00 0.00 2.93
887 911 7.865889 GGTCAGATTCCGAAATTTTTACAAACT 59.134 33.333 0.00 0.00 0.00 2.66
888 912 9.887406 GTCAGATTCCGAAATTTTTACAAACTA 57.113 29.630 0.00 0.00 0.00 2.24
890 914 9.341899 CAGATTCCGAAATTTTTACAAACTAGG 57.658 33.333 0.00 0.00 0.00 3.02
891 915 9.292195 AGATTCCGAAATTTTTACAAACTAGGA 57.708 29.630 0.00 0.00 0.00 2.94
894 918 8.624367 TCCGAAATTTTTACAAACTAGGATCA 57.376 30.769 0.00 0.00 0.00 2.92
895 919 8.726988 TCCGAAATTTTTACAAACTAGGATCAG 58.273 33.333 0.00 0.00 0.00 2.90
896 920 8.726988 CCGAAATTTTTACAAACTAGGATCAGA 58.273 33.333 0.00 0.00 0.00 3.27
901 925 8.703604 TTTTTACAAACTAGGATCAGATCTCG 57.296 34.615 10.36 2.15 0.00 4.04
902 926 7.406031 TTTACAAACTAGGATCAGATCTCGT 57.594 36.000 10.36 2.73 0.00 4.18
903 927 5.923733 ACAAACTAGGATCAGATCTCGTT 57.076 39.130 10.36 8.15 0.00 3.85
904 928 5.897050 ACAAACTAGGATCAGATCTCGTTC 58.103 41.667 10.36 0.00 0.00 3.95
905 929 5.419155 ACAAACTAGGATCAGATCTCGTTCA 59.581 40.000 10.36 0.00 0.00 3.18
906 930 6.071334 ACAAACTAGGATCAGATCTCGTTCAA 60.071 38.462 10.36 0.00 0.00 2.69
907 931 5.508200 ACTAGGATCAGATCTCGTTCAAC 57.492 43.478 10.36 0.00 0.00 3.18
908 932 3.810310 AGGATCAGATCTCGTTCAACC 57.190 47.619 10.36 0.00 0.00 3.77
909 933 3.370104 AGGATCAGATCTCGTTCAACCT 58.630 45.455 10.36 0.00 0.00 3.50
910 934 3.383185 AGGATCAGATCTCGTTCAACCTC 59.617 47.826 10.36 0.00 0.00 3.85
911 935 2.921634 TCAGATCTCGTTCAACCTCG 57.078 50.000 0.00 0.00 0.00 4.63
912 936 2.433436 TCAGATCTCGTTCAACCTCGA 58.567 47.619 0.00 0.00 34.88 4.04
919 943 2.683968 TCGTTCAACCTCGAGAAATGG 58.316 47.619 15.71 0.00 0.00 3.16
920 944 1.732259 CGTTCAACCTCGAGAAATGGG 59.268 52.381 15.71 0.00 0.00 4.00
921 945 2.779506 GTTCAACCTCGAGAAATGGGT 58.220 47.619 15.71 0.00 0.00 4.51
922 946 2.742589 GTTCAACCTCGAGAAATGGGTC 59.257 50.000 15.71 1.29 0.00 4.46
923 947 1.974957 TCAACCTCGAGAAATGGGTCA 59.025 47.619 15.71 0.00 0.00 4.02
924 948 2.370519 TCAACCTCGAGAAATGGGTCAA 59.629 45.455 15.71 0.00 0.00 3.18
925 949 3.146066 CAACCTCGAGAAATGGGTCAAA 58.854 45.455 15.71 0.00 0.00 2.69
926 950 3.502123 ACCTCGAGAAATGGGTCAAAA 57.498 42.857 15.71 0.00 0.00 2.44
927 951 3.146847 ACCTCGAGAAATGGGTCAAAAC 58.853 45.455 15.71 0.00 0.00 2.43
928 952 3.146066 CCTCGAGAAATGGGTCAAAACA 58.854 45.455 15.71 0.00 0.00 2.83
929 953 3.189287 CCTCGAGAAATGGGTCAAAACAG 59.811 47.826 15.71 0.00 0.00 3.16
930 954 3.146066 TCGAGAAATGGGTCAAAACAGG 58.854 45.455 0.00 0.00 0.00 4.00
931 955 3.146066 CGAGAAATGGGTCAAAACAGGA 58.854 45.455 0.00 0.00 0.00 3.86
932 956 3.568007 CGAGAAATGGGTCAAAACAGGAA 59.432 43.478 0.00 0.00 0.00 3.36
933 957 4.037446 CGAGAAATGGGTCAAAACAGGAAA 59.963 41.667 0.00 0.00 0.00 3.13
934 958 5.451242 CGAGAAATGGGTCAAAACAGGAAAA 60.451 40.000 0.00 0.00 0.00 2.29
935 959 6.499106 AGAAATGGGTCAAAACAGGAAAAT 57.501 33.333 0.00 0.00 0.00 1.82
936 960 6.899089 AGAAATGGGTCAAAACAGGAAAATT 58.101 32.000 0.00 0.00 0.00 1.82
937 961 7.345691 AGAAATGGGTCAAAACAGGAAAATTT 58.654 30.769 0.00 0.00 0.00 1.82
938 962 6.940831 AATGGGTCAAAACAGGAAAATTTG 57.059 33.333 0.00 0.00 35.81 2.32
939 963 4.195416 TGGGTCAAAACAGGAAAATTTGC 58.805 39.130 0.00 0.00 34.77 3.68
940 964 3.563808 GGGTCAAAACAGGAAAATTTGCC 59.436 43.478 7.17 7.17 34.77 4.52
941 965 4.195416 GGTCAAAACAGGAAAATTTGCCA 58.805 39.130 17.92 0.00 34.77 4.92
942 966 4.821260 GGTCAAAACAGGAAAATTTGCCAT 59.179 37.500 17.92 1.95 34.77 4.40
943 967 5.049474 GGTCAAAACAGGAAAATTTGCCATC 60.049 40.000 17.92 0.00 34.77 3.51
944 968 4.749099 TCAAAACAGGAAAATTTGCCATCG 59.251 37.500 17.92 7.75 34.77 3.84
945 969 4.599047 AAACAGGAAAATTTGCCATCGA 57.401 36.364 17.92 0.00 0.00 3.59
946 970 3.575965 ACAGGAAAATTTGCCATCGAC 57.424 42.857 17.92 0.00 0.00 4.20
947 971 2.231235 ACAGGAAAATTTGCCATCGACC 59.769 45.455 17.92 0.05 0.00 4.79
948 972 1.472480 AGGAAAATTTGCCATCGACCG 59.528 47.619 17.92 0.00 0.00 4.79
949 973 1.268265 GAAAATTTGCCATCGACCGC 58.732 50.000 0.00 0.00 0.00 5.68
950 974 0.887933 AAAATTTGCCATCGACCGCT 59.112 45.000 7.05 0.00 0.00 5.52
951 975 0.171007 AAATTTGCCATCGACCGCTG 59.829 50.000 7.05 0.00 0.00 5.18
952 976 2.270297 AATTTGCCATCGACCGCTGC 62.270 55.000 7.05 0.00 0.00 5.25
1063 1087 1.040339 TTGGTTTGGTTGGCTTCGCT 61.040 50.000 0.00 0.00 0.00 4.93
1064 1088 1.285950 GGTTTGGTTGGCTTCGCTC 59.714 57.895 0.00 0.00 0.00 5.03
1065 1089 1.082104 GTTTGGTTGGCTTCGCTCG 60.082 57.895 0.00 0.00 0.00 5.03
1066 1090 2.903547 TTTGGTTGGCTTCGCTCGC 61.904 57.895 0.00 0.00 0.00 5.03
1139 1163 4.043100 GCCCACCCCACCCACTAC 62.043 72.222 0.00 0.00 0.00 2.73
1354 1378 2.125106 GAGGTCCGCCCATGTCAC 60.125 66.667 0.00 0.00 34.66 3.67
1395 1419 7.020827 ACCTTCTCTCTGAATATTGTTTCCA 57.979 36.000 0.00 0.00 33.71 3.53
1411 1435 6.539649 TGTTTCCATTGTTAGTTTCTCTCG 57.460 37.500 0.00 0.00 0.00 4.04
1457 1487 2.030007 TGCTTTCTTGAATCTTTGGGCG 60.030 45.455 0.00 0.00 0.00 6.13
1567 1597 4.467769 CCCCATGTTCTGAAGCATAGAAT 58.532 43.478 0.00 0.00 36.63 2.40
1578 1608 5.684704 TGAAGCATAGAATCTAGTTTGGGG 58.315 41.667 0.00 0.00 0.00 4.96
1601 1639 1.351017 AGCAACTTCTTCGATCCCCAA 59.649 47.619 0.00 0.00 0.00 4.12
1623 1661 0.518636 CTCACCATGCACCACGAAAG 59.481 55.000 0.00 0.00 0.00 2.62
1638 1676 0.449388 GAAAGCTTCGACATGGCTGG 59.551 55.000 0.00 0.00 36.37 4.85
1665 1703 1.805945 GTTCTCGCGCGTCCATCTT 60.806 57.895 30.98 0.00 0.00 2.40
1666 1704 1.516386 TTCTCGCGCGTCCATCTTC 60.516 57.895 30.98 0.00 0.00 2.87
1667 1705 1.934220 TTCTCGCGCGTCCATCTTCT 61.934 55.000 30.98 0.00 0.00 2.85
1668 1706 1.941734 CTCGCGCGTCCATCTTCTC 60.942 63.158 30.98 0.00 0.00 2.87
1671 1709 2.490217 CGCGTCCATCTTCTCCGT 59.510 61.111 0.00 0.00 0.00 4.69
1738 1782 3.339093 GTGGGGGTGGGGGAGAAG 61.339 72.222 0.00 0.00 0.00 2.85
1770 1814 2.288666 GCATATGTCCACATTCGGTGT 58.711 47.619 4.29 0.00 46.44 4.16
1781 1825 1.131303 ATTCGGTGTCCCCTTGGTCA 61.131 55.000 0.00 0.00 0.00 4.02
1782 1826 1.131303 TTCGGTGTCCCCTTGGTCAT 61.131 55.000 0.00 0.00 32.22 3.06
1828 1873 3.545426 GCGCAAATATTCAGTTCCGTACC 60.545 47.826 0.30 0.00 0.00 3.34
1855 1904 1.349026 TCCTGGCCTTTTCTCTGACAG 59.651 52.381 3.32 0.00 0.00 3.51
1925 1974 2.100584 ACAAAACCGAATTTCTGCTGCA 59.899 40.909 0.88 0.88 0.00 4.41
1942 1991 2.612604 TGCATCAAATGATTGTGCAGC 58.387 42.857 6.17 1.32 42.80 5.25
2040 2089 2.507407 TGGGGAGCCATGTTTTCTAC 57.493 50.000 0.00 0.00 0.00 2.59
2041 2090 1.992557 TGGGGAGCCATGTTTTCTACT 59.007 47.619 0.00 0.00 0.00 2.57
2042 2091 2.290896 TGGGGAGCCATGTTTTCTACTG 60.291 50.000 0.00 0.00 0.00 2.74
2145 2217 5.295787 TGGAACAGCTAAAACAAGTACTGTG 59.704 40.000 0.00 0.00 38.67 3.66
2172 2244 1.401018 CGTTTTCGGTTTGGATGCTCC 60.401 52.381 0.00 0.00 39.94 4.70
2176 2248 3.644966 TTCGGTTTGGATGCTCCTTAT 57.355 42.857 4.21 0.00 37.46 1.73
2201 2273 1.074072 TGGCAAGTTGGTATGCGGT 59.926 52.632 4.75 0.00 43.47 5.68
2221 2293 3.542648 GTCCATAAACTAGGGAACTGCC 58.457 50.000 0.00 0.00 40.77 4.85
2226 2298 5.104485 CCATAAACTAGGGAACTGCCTAACT 60.104 44.000 0.00 0.00 43.88 2.24
2239 2574 9.780186 GGAACTGCCTAACTAATACTCATATTT 57.220 33.333 0.00 0.00 32.98 1.40
2266 2601 6.429521 TGGTAGTTCTTACAAGTTAAGCCT 57.570 37.500 0.00 0.00 33.73 4.58
2345 2680 8.265055 CACTCCCTCTTATCCAAAATAAGTGTA 58.735 37.037 5.08 0.00 34.24 2.90
2348 2683 7.054124 CCCTCTTATCCAAAATAAGTGTAGCA 58.946 38.462 5.08 0.00 34.24 3.49
2373 2708 6.328934 AGTTTTGGATTGGGGTTAGTTCAAAT 59.671 34.615 0.00 0.00 0.00 2.32
2376 2711 5.261216 TGGATTGGGGTTAGTTCAAATCTC 58.739 41.667 0.00 0.00 0.00 2.75
2380 2715 3.328343 TGGGGTTAGTTCAAATCTCCGAA 59.672 43.478 0.00 0.00 0.00 4.30
2386 2721 7.360691 GGGTTAGTTCAAATCTCCGAAACTTAC 60.361 40.741 0.00 0.00 0.00 2.34
2413 2748 7.047460 TGGATCGGAGGTAGTAGTATTTTTC 57.953 40.000 0.00 0.00 0.00 2.29
2467 2804 1.679032 GGGATGTCACCCTAGCACAAC 60.679 57.143 0.00 0.00 45.90 3.32
2480 2817 8.097038 CACCCTAGCACAACATGATATAGTTAT 58.903 37.037 0.00 0.00 0.00 1.89
2481 2818 9.321532 ACCCTAGCACAACATGATATAGTTATA 57.678 33.333 0.00 0.00 0.00 0.98
2482 2819 9.587772 CCCTAGCACAACATGATATAGTTATAC 57.412 37.037 0.00 0.00 0.00 1.47
2613 3411 6.249260 GTGTTTCTATACTGCAAGCAATTTCG 59.751 38.462 0.00 0.00 37.60 3.46
3110 3916 9.483916 AATTTTCTTACCATTTTTAAAGGTCCG 57.516 29.630 1.13 0.00 36.87 4.79
3111 3917 7.820578 TTTCTTACCATTTTTAAAGGTCCGA 57.179 32.000 1.13 0.00 36.87 4.55
3183 4065 2.822561 TGGATCTCATATCGACCTCTGC 59.177 50.000 0.00 0.00 0.00 4.26
3190 4072 4.832248 TCATATCGACCTCTGCACTTTTT 58.168 39.130 0.00 0.00 0.00 1.94
3276 4158 7.430760 ACTAGCAAGGATTTATGAGAGACTT 57.569 36.000 0.00 0.00 0.00 3.01
3335 4217 5.690464 ATTGAGCTCACTTGTTAGATCCT 57.310 39.130 18.03 0.00 0.00 3.24
3399 4284 6.114767 AGCACCAATGATTTTTCACTTTTGT 58.885 32.000 0.00 0.00 0.00 2.83
3453 4338 9.593134 TGCACAGTAAAATTGAAACAAATAGTT 57.407 25.926 0.00 0.00 43.89 2.24
3508 4393 3.063670 TGAAAATGCACGTGTGTTCTG 57.936 42.857 18.38 0.00 0.00 3.02
3514 4399 1.428370 GCACGTGTGTTCTGACTGCA 61.428 55.000 18.38 0.00 0.00 4.41
3626 4511 0.165944 GTGGACATGAACGAAAGCCG 59.834 55.000 0.00 0.00 45.44 5.52
3650 4535 9.146984 CCGTCTTTATGTACAAATAAGTGAGAA 57.853 33.333 0.00 0.00 0.00 2.87
3671 4556 6.568869 AGAACTGATGATGCTTCACTAGTAC 58.431 40.000 16.17 0.00 32.94 2.73
3674 4559 7.270757 ACTGATGATGCTTCACTAGTACTAG 57.729 40.000 25.30 25.30 39.04 2.57
3675 4560 6.831353 ACTGATGATGCTTCACTAGTACTAGT 59.169 38.462 26.61 26.61 46.52 2.57
3676 4561 7.993758 ACTGATGATGCTTCACTAGTACTAGTA 59.006 37.037 30.34 17.81 43.98 1.82
3677 4562 8.747538 TGATGATGCTTCACTAGTACTAGTAA 57.252 34.615 30.34 17.80 43.98 2.24
3678 4563 9.185680 TGATGATGCTTCACTAGTACTAGTAAA 57.814 33.333 30.34 23.25 43.98 2.01
3683 4568 9.804758 ATGCTTCACTAGTACTAGTAAATTCAC 57.195 33.333 30.34 17.84 43.98 3.18
3684 4569 9.021807 TGCTTCACTAGTACTAGTAAATTCACT 57.978 33.333 30.34 6.64 43.98 3.41
3685 4570 9.505995 GCTTCACTAGTACTAGTAAATTCACTC 57.494 37.037 30.34 12.14 43.98 3.51
3715 4600 6.591834 CAGTACACTCAAACTTCTCCATTAGG 59.408 42.308 0.00 0.00 0.00 2.69
3729 4615 2.034124 CATTAGGGCCACATTTCAGGG 58.966 52.381 6.18 0.00 0.00 4.45
3743 4629 0.250467 TCAGGGTGCAAGCAGAGAAC 60.250 55.000 0.00 0.00 34.77 3.01
3764 4650 2.225019 CGCTAATTGCATAGCAGGGAAG 59.775 50.000 17.24 0.00 46.94 3.46
3768 4654 5.010415 GCTAATTGCATAGCAGGGAAGAAAT 59.990 40.000 13.30 0.00 46.06 2.17
3769 4655 5.526506 AATTGCATAGCAGGGAAGAAATC 57.473 39.130 0.00 0.00 40.61 2.17
3770 4656 2.564771 TGCATAGCAGGGAAGAAATCG 58.435 47.619 0.00 0.00 33.32 3.34
3771 4657 1.265365 GCATAGCAGGGAAGAAATCGC 59.735 52.381 0.00 0.00 41.15 4.58
3772 4658 2.564771 CATAGCAGGGAAGAAATCGCA 58.435 47.619 0.00 0.00 43.19 5.10
3773 4659 3.144506 CATAGCAGGGAAGAAATCGCAT 58.855 45.455 0.00 0.00 43.19 4.73
3778 4664 3.762779 CAGGGAAGAAATCGCATGTTTC 58.237 45.455 0.00 0.00 43.19 2.78
3783 4669 5.639082 GGGAAGAAATCGCATGTTTCAAAAT 59.361 36.000 9.25 0.00 40.57 1.82
3796 4682 9.384682 GCATGTTTCAAAATTAAGTTCATTTGG 57.615 29.630 0.00 0.00 34.39 3.28
3826 4712 8.655935 TCATAATAGAGGTGCTATTGATGAGA 57.344 34.615 7.78 0.00 46.59 3.27
3861 4747 9.987272 TGTCCTTGACATAATTATCTGTAGATG 57.013 33.333 4.67 0.00 37.67 2.90
3867 4753 8.210265 TGACATAATTATCTGTAGATGTGGCAA 58.790 33.333 4.67 0.00 36.05 4.52
3875 4761 7.944729 ATCTGTAGATGTGGCAAAATTTACT 57.055 32.000 11.18 0.00 32.68 2.24
3876 4762 7.759489 TCTGTAGATGTGGCAAAATTTACTT 57.241 32.000 11.18 0.00 0.00 2.24
3877 4763 8.177119 TCTGTAGATGTGGCAAAATTTACTTT 57.823 30.769 11.18 0.00 0.00 2.66
3878 4764 8.296713 TCTGTAGATGTGGCAAAATTTACTTTC 58.703 33.333 11.18 0.00 0.00 2.62
3879 4765 8.177119 TGTAGATGTGGCAAAATTTACTTTCT 57.823 30.769 11.18 0.00 0.00 2.52
3880 4766 8.637986 TGTAGATGTGGCAAAATTTACTTTCTT 58.362 29.630 11.18 0.00 0.00 2.52
3881 4767 7.951530 AGATGTGGCAAAATTTACTTTCTTG 57.048 32.000 0.00 0.00 0.00 3.02
3882 4768 7.725251 AGATGTGGCAAAATTTACTTTCTTGA 58.275 30.769 0.00 0.00 0.00 3.02
3883 4769 8.203485 AGATGTGGCAAAATTTACTTTCTTGAA 58.797 29.630 0.00 0.00 0.00 2.69
3884 4770 8.729805 ATGTGGCAAAATTTACTTTCTTGAAA 57.270 26.923 0.00 0.00 0.00 2.69
3885 4771 8.729805 TGTGGCAAAATTTACTTTCTTGAAAT 57.270 26.923 0.00 0.00 0.00 2.17
3886 4772 9.823647 TGTGGCAAAATTTACTTTCTTGAAATA 57.176 25.926 0.00 0.00 0.00 1.40
3911 4797 6.952773 TTTACAACTGCTAAGGATGTTTGT 57.047 33.333 0.00 0.00 32.06 2.83
3919 4805 8.232913 ACTGCTAAGGATGTTTGTTTTCTTAA 57.767 30.769 0.00 0.00 0.00 1.85
3939 4825 7.953493 TTCTTAAAAGACATGGGTATTCCCTTT 59.047 33.333 9.09 2.53 43.68 3.11
3997 4883 2.301583 ACAGGAGGAACTTGAAGAGCTC 59.698 50.000 5.27 5.27 41.55 4.09
4021 4907 6.761242 TCAATAAGATGGATAAGGTGTCAACG 59.239 38.462 0.00 0.00 0.00 4.10
4027 4913 2.000447 GATAAGGTGTCAACGGCACTC 59.000 52.381 0.00 0.00 37.07 3.51
4074 4961 7.743104 ACTCGATCAATTCACATTTTACTGTC 58.257 34.615 0.00 0.00 0.00 3.51
4078 4965 6.012658 TCAATTCACATTTTACTGTCTGGC 57.987 37.500 0.00 0.00 0.00 4.85
4126 5016 3.847184 TGTGTATTATTGGTGACTGGGGA 59.153 43.478 0.00 0.00 0.00 4.81
4140 5030 2.092753 ACTGGGGACTGACTGCATTATG 60.093 50.000 0.00 0.00 0.00 1.90
4415 5324 2.912624 AAGAACGCAAGCAGCAGCC 61.913 57.895 0.00 0.00 46.13 4.85
4696 5605 7.447374 TGTTGGATATTCTGAAATCAACGTT 57.553 32.000 0.00 0.00 33.23 3.99
4715 5624 4.206200 ACGTTGAACAATGAAAATTGACGC 59.794 37.500 12.75 0.00 33.91 5.19
4724 5633 8.816640 ACAATGAAAATTGACGCTTATTTCTT 57.183 26.923 5.49 0.00 35.60 2.52
4775 5690 5.771469 TGGATGTATTTTTGTTGCTGTGAG 58.229 37.500 0.00 0.00 0.00 3.51
4800 5723 7.422399 GTGGAACTTTTGCTATTTTGTGAGTA 58.578 34.615 0.00 0.00 0.00 2.59
4842 5795 3.826524 TGCAACCTACCATTTGACTTGA 58.173 40.909 0.00 0.00 0.00 3.02
4886 5839 5.777850 TGAGTAAAAAGCCCAAACCTAAC 57.222 39.130 0.00 0.00 0.00 2.34
4944 5898 0.326264 GCCACAAGTGAGGAGGTGAT 59.674 55.000 0.94 0.00 33.16 3.06
4956 5910 2.630580 AGGAGGTGATCTTATCCGAAGC 59.369 50.000 0.00 0.00 36.91 3.86
4957 5911 2.289133 GGAGGTGATCTTATCCGAAGCC 60.289 54.545 0.00 0.00 0.00 4.35
4959 5913 2.975489 AGGTGATCTTATCCGAAGCCAT 59.025 45.455 0.00 0.00 0.00 4.40
4960 5914 3.070018 GGTGATCTTATCCGAAGCCATG 58.930 50.000 0.00 0.00 0.00 3.66
4961 5915 3.070018 GTGATCTTATCCGAAGCCATGG 58.930 50.000 7.63 7.63 0.00 3.66
4962 5916 2.079925 GATCTTATCCGAAGCCATGGC 58.920 52.381 30.12 30.12 42.33 4.40
4963 5917 0.836606 TCTTATCCGAAGCCATGGCA 59.163 50.000 37.18 18.00 44.88 4.92
4964 5918 1.202687 TCTTATCCGAAGCCATGGCAG 60.203 52.381 37.18 26.04 44.88 4.85
4965 5919 0.546122 TTATCCGAAGCCATGGCAGT 59.454 50.000 37.18 25.05 44.88 4.40
4966 5920 0.179048 TATCCGAAGCCATGGCAGTG 60.179 55.000 37.18 24.41 44.88 3.66
4967 5921 2.898920 ATCCGAAGCCATGGCAGTGG 62.899 60.000 37.18 31.18 44.88 4.00
5000 5954 4.000557 GCGCACACACTCACCACG 62.001 66.667 0.30 0.00 0.00 4.94
5049 6003 0.755686 CCAGAGTACAGAGGATGGCC 59.244 60.000 0.00 0.00 0.00 5.36
5100 6060 1.992277 CACCACCTCCCCTCTCCTG 60.992 68.421 0.00 0.00 0.00 3.86
5413 6373 1.719600 GCTGTTTCTCGACATGCTCT 58.280 50.000 0.00 0.00 0.00 4.09
5460 6420 1.737008 GTTCCCGTCTCTGTTCGCC 60.737 63.158 0.00 0.00 0.00 5.54
5611 6571 2.999648 AGGCTCTGGCGCTCTTCA 61.000 61.111 7.64 0.00 39.81 3.02
5619 6579 2.358003 GCGCTCTTCAGGCAGTGT 60.358 61.111 0.00 0.00 0.00 3.55
5622 6582 0.601046 CGCTCTTCAGGCAGTGTCAA 60.601 55.000 0.00 0.00 0.00 3.18
5624 6584 1.270518 GCTCTTCAGGCAGTGTCAAGA 60.271 52.381 0.00 0.00 0.00 3.02
5634 6594 2.460918 CAGTGTCAAGAGTTCGACGTT 58.539 47.619 0.00 0.00 34.78 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.031516 CCTCACTGCTTGTCGCCAG 61.032 63.158 0.00 0.00 38.05 4.85
8 9 2.281761 CCGCCAACCTCACTGCTT 60.282 61.111 0.00 0.00 0.00 3.91
24 25 3.482783 GCTCAGCTTGACGTCGCC 61.483 66.667 11.62 1.30 0.00 5.54
58 59 1.226802 CACTCCCATCGACTGCTCG 60.227 63.158 0.00 0.00 41.65 5.03
60 61 2.362369 CCCACTCCCATCGACTGCT 61.362 63.158 0.00 0.00 0.00 4.24
65 66 0.106469 CTCTCTCCCACTCCCATCGA 60.106 60.000 0.00 0.00 0.00 3.59
69 70 0.628522 CTCTCTCTCTCCCACTCCCA 59.371 60.000 0.00 0.00 0.00 4.37
70 71 0.923358 TCTCTCTCTCTCCCACTCCC 59.077 60.000 0.00 0.00 0.00 4.30
71 72 1.843851 TCTCTCTCTCTCTCCCACTCC 59.156 57.143 0.00 0.00 0.00 3.85
72 73 2.771943 TCTCTCTCTCTCTCTCCCACTC 59.228 54.545 0.00 0.00 0.00 3.51
73 74 2.774234 CTCTCTCTCTCTCTCTCCCACT 59.226 54.545 0.00 0.00 0.00 4.00
74 75 2.771943 TCTCTCTCTCTCTCTCTCCCAC 59.228 54.545 0.00 0.00 0.00 4.61
75 76 3.041211 CTCTCTCTCTCTCTCTCTCCCA 58.959 54.545 0.00 0.00 0.00 4.37
76 77 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
77 78 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
78 79 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
79 80 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
80 81 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
81 82 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
82 83 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
83 84 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
84 85 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
85 86 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
86 87 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
87 88 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
88 89 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
89 90 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
156 173 0.598562 ATCAGTGAAGTGCTCGTCGT 59.401 50.000 0.00 0.00 0.00 4.34
168 185 2.178273 CACGTCGCCGATCAGTGA 59.822 61.111 12.70 0.00 37.88 3.41
170 187 3.052620 CTCCACGTCGCCGATCAGT 62.053 63.158 0.00 0.00 37.88 3.41
191 208 4.258543 CTCTCCTCTCTGTTCGTCTACTT 58.741 47.826 0.00 0.00 0.00 2.24
215 232 2.750350 CACTCCCCTTGGTCGCTT 59.250 61.111 0.00 0.00 0.00 4.68
234 251 2.820479 CCTCTCTCTCGGCGTCGT 60.820 66.667 10.18 0.00 37.69 4.34
239 256 3.223589 GAGCCCCTCTCTCTCGGC 61.224 72.222 0.00 0.00 41.96 5.54
277 294 3.261951 CCATTAGCGGCCGTCACG 61.262 66.667 28.70 11.73 0.00 4.35
288 305 1.742761 CACTCAGGTGTGGCCATTAG 58.257 55.000 9.72 3.00 40.61 1.73
299 316 1.552337 CAGGTATGTCAGCACTCAGGT 59.448 52.381 0.00 0.00 0.00 4.00
313 330 1.366366 GGGCATACGCGTCAGGTAT 59.634 57.895 18.63 0.00 39.92 2.73
326 343 3.631250 AGGTTAATGACAAATCGGGCAT 58.369 40.909 0.00 0.00 0.00 4.40
327 344 3.080300 AGGTTAATGACAAATCGGGCA 57.920 42.857 0.00 0.00 0.00 5.36
342 359 7.125113 CGAAACGTTAAGCTTTAACAAGGTTA 58.875 34.615 3.20 3.13 46.67 2.85
348 365 4.569966 TGACCGAAACGTTAAGCTTTAACA 59.430 37.500 3.20 0.00 0.00 2.41
351 368 3.494251 GGTGACCGAAACGTTAAGCTTTA 59.506 43.478 3.20 0.00 0.00 1.85
361 378 1.011333 AAACACTGGTGACCGAAACG 58.989 50.000 7.78 0.00 0.00 3.60
400 418 8.458052 TCTACAATTCGTTGCAAAATATCACAT 58.542 29.630 0.00 0.00 0.00 3.21
408 426 7.030165 TCTGTTTTCTACAATTCGTTGCAAAA 58.970 30.769 0.00 0.00 36.02 2.44
412 430 7.519002 ACTATCTGTTTTCTACAATTCGTTGC 58.481 34.615 0.00 0.00 36.02 4.17
472 490 7.329717 CGATTTTTGTGGAGTCCTATATAGCTC 59.670 40.741 11.33 6.54 0.00 4.09
482 500 2.742589 GGAGACGATTTTTGTGGAGTCC 59.257 50.000 0.73 0.73 0.00 3.85
483 501 3.399330 TGGAGACGATTTTTGTGGAGTC 58.601 45.455 0.00 0.00 0.00 3.36
486 504 4.202070 GGTTTTGGAGACGATTTTTGTGGA 60.202 41.667 0.00 0.00 0.00 4.02
487 505 4.048504 GGTTTTGGAGACGATTTTTGTGG 58.951 43.478 0.00 0.00 0.00 4.17
491 509 4.442332 GGGTTGGTTTTGGAGACGATTTTT 60.442 41.667 0.00 0.00 0.00 1.94
537 559 4.511617 TTGGCAGTCATATTGCGAAAAA 57.488 36.364 0.00 0.00 42.42 1.94
539 561 4.233789 GTTTTGGCAGTCATATTGCGAAA 58.766 39.130 4.51 4.51 44.02 3.46
541 563 2.816672 TGTTTTGGCAGTCATATTGCGA 59.183 40.909 0.00 0.00 42.42 5.10
544 568 6.477688 GGATCAATGTTTTGGCAGTCATATTG 59.522 38.462 0.00 0.00 33.44 1.90
600 624 9.449719 GGGTCAGATCTTAATCAACTTTTAGAA 57.550 33.333 0.00 0.00 34.07 2.10
601 625 8.826765 AGGGTCAGATCTTAATCAACTTTTAGA 58.173 33.333 0.00 0.00 34.07 2.10
603 627 9.886132 GTAGGGTCAGATCTTAATCAACTTTTA 57.114 33.333 0.00 0.00 34.07 1.52
605 629 8.152023 AGTAGGGTCAGATCTTAATCAACTTT 57.848 34.615 0.00 0.00 34.07 2.66
606 630 7.741554 AGTAGGGTCAGATCTTAATCAACTT 57.258 36.000 0.00 0.00 34.07 2.66
607 631 7.741554 AAGTAGGGTCAGATCTTAATCAACT 57.258 36.000 0.00 0.00 34.07 3.16
608 632 7.201652 GCAAAGTAGGGTCAGATCTTAATCAAC 60.202 40.741 0.00 0.00 34.07 3.18
609 633 6.823689 GCAAAGTAGGGTCAGATCTTAATCAA 59.176 38.462 0.00 0.00 34.07 2.57
610 634 6.070251 TGCAAAGTAGGGTCAGATCTTAATCA 60.070 38.462 0.00 0.00 34.07 2.57
612 636 6.313519 TGCAAAGTAGGGTCAGATCTTAAT 57.686 37.500 0.00 0.00 0.00 1.40
613 637 5.755409 TGCAAAGTAGGGTCAGATCTTAA 57.245 39.130 0.00 0.00 0.00 1.85
614 638 5.755409 TTGCAAAGTAGGGTCAGATCTTA 57.245 39.130 0.00 0.00 0.00 2.10
615 639 4.640771 TTGCAAAGTAGGGTCAGATCTT 57.359 40.909 0.00 0.00 0.00 2.40
617 641 5.705609 TTTTTGCAAAGTAGGGTCAGATC 57.294 39.130 12.41 0.00 0.00 2.75
619 643 6.478512 AAATTTTTGCAAAGTAGGGTCAGA 57.521 33.333 12.41 0.00 0.00 3.27
620 644 5.402270 CGAAATTTTTGCAAAGTAGGGTCAG 59.598 40.000 12.41 0.00 0.00 3.51
621 645 5.285651 CGAAATTTTTGCAAAGTAGGGTCA 58.714 37.500 12.41 0.00 0.00 4.02
622 646 4.684242 CCGAAATTTTTGCAAAGTAGGGTC 59.316 41.667 12.41 5.91 0.00 4.46
624 648 3.993736 CCCGAAATTTTTGCAAAGTAGGG 59.006 43.478 12.41 15.20 34.07 3.53
625 649 4.877282 TCCCGAAATTTTTGCAAAGTAGG 58.123 39.130 12.41 10.69 0.00 3.18
626 650 6.308766 CAGATCCCGAAATTTTTGCAAAGTAG 59.691 38.462 12.41 2.62 0.00 2.57
627 651 6.015856 TCAGATCCCGAAATTTTTGCAAAGTA 60.016 34.615 12.41 5.29 0.00 2.24
628 652 4.990426 CAGATCCCGAAATTTTTGCAAAGT 59.010 37.500 12.41 2.64 0.00 2.66
629 653 5.229423 TCAGATCCCGAAATTTTTGCAAAG 58.771 37.500 12.41 0.00 0.00 2.77
630 654 5.207110 TCAGATCCCGAAATTTTTGCAAA 57.793 34.783 8.05 8.05 0.00 3.68
631 655 4.862902 TCAGATCCCGAAATTTTTGCAA 57.137 36.364 0.00 0.00 0.00 4.08
633 657 4.363138 GGATCAGATCCCGAAATTTTTGC 58.637 43.478 17.97 0.00 43.88 3.68
644 668 6.709813 GCGGTAGCATAAGGATCAGATCCC 62.710 54.167 24.02 9.80 46.44 3.85
645 669 3.677424 GCGGTAGCATAAGGATCAGATCC 60.677 52.174 20.76 20.76 45.99 3.36
647 671 3.601443 GCGGTAGCATAAGGATCAGAT 57.399 47.619 0.00 0.00 44.35 2.90
654 678 3.006672 CCTTGGCGGTAGCATAAGG 57.993 57.895 9.99 9.99 45.76 2.69
660 684 4.078516 ACGGTCCTTGGCGGTAGC 62.079 66.667 0.00 0.00 44.18 3.58
661 685 2.125673 CACGGTCCTTGGCGGTAG 60.126 66.667 0.00 0.00 0.00 3.18
662 686 3.697747 CCACGGTCCTTGGCGGTA 61.698 66.667 0.59 0.00 0.00 4.02
675 699 3.969250 ATGCAACCCTACCGCCACG 62.969 63.158 0.00 0.00 0.00 4.94
676 700 2.045340 ATGCAACCCTACCGCCAC 60.045 61.111 0.00 0.00 0.00 5.01
677 701 2.045438 CATGCAACCCTACCGCCA 60.045 61.111 0.00 0.00 0.00 5.69
678 702 2.045340 ACATGCAACCCTACCGCC 60.045 61.111 0.00 0.00 0.00 6.13
684 708 1.198759 ACGGTAGGACATGCAACCCT 61.199 55.000 9.42 9.42 0.00 4.34
685 709 0.538118 TACGGTAGGACATGCAACCC 59.462 55.000 0.00 0.00 0.00 4.11
686 710 2.389962 TTACGGTAGGACATGCAACC 57.610 50.000 0.00 0.00 0.00 3.77
687 711 4.752661 TTTTTACGGTAGGACATGCAAC 57.247 40.909 0.00 0.00 0.00 4.17
707 731 9.825972 CACACTATGTTTCATACTTCGAAATTT 57.174 29.630 0.00 0.00 35.01 1.82
708 732 8.999431 ACACACTATGTTTCATACTTCGAAATT 58.001 29.630 0.00 0.00 38.98 1.82
710 734 7.570507 GCACACACTATGTTTCATACTTCGAAA 60.571 37.037 0.00 0.00 40.64 3.46
711 735 6.128661 GCACACACTATGTTTCATACTTCGAA 60.129 38.462 0.00 0.00 40.64 3.71
713 737 5.348724 AGCACACACTATGTTTCATACTTCG 59.651 40.000 0.00 0.00 40.64 3.79
714 738 6.454318 CGAGCACACACTATGTTTCATACTTC 60.454 42.308 0.00 0.00 40.64 3.01
715 739 5.348724 CGAGCACACACTATGTTTCATACTT 59.651 40.000 0.00 0.00 40.64 2.24
716 740 4.864806 CGAGCACACACTATGTTTCATACT 59.135 41.667 0.00 0.00 40.64 2.12
717 741 4.492570 GCGAGCACACACTATGTTTCATAC 60.493 45.833 0.00 0.00 40.64 2.39
720 744 1.798223 GCGAGCACACACTATGTTTCA 59.202 47.619 0.00 0.00 40.64 2.69
722 746 1.877637 TGCGAGCACACACTATGTTT 58.122 45.000 0.00 0.00 40.64 2.83
724 748 1.205655 AGATGCGAGCACACACTATGT 59.794 47.619 0.00 0.00 44.81 2.29
725 749 1.931906 AGATGCGAGCACACACTATG 58.068 50.000 0.00 0.00 0.00 2.23
726 750 4.053983 CAATAGATGCGAGCACACACTAT 58.946 43.478 0.00 5.26 0.00 2.12
728 752 2.274437 CAATAGATGCGAGCACACACT 58.726 47.619 0.00 1.02 0.00 3.55
729 753 1.267732 GCAATAGATGCGAGCACACAC 60.268 52.381 0.00 0.00 46.87 3.82
730 754 1.009078 GCAATAGATGCGAGCACACA 58.991 50.000 0.00 0.00 46.87 3.72
731 755 3.814049 GCAATAGATGCGAGCACAC 57.186 52.632 0.00 0.00 46.87 3.82
740 764 1.942657 CAAGGTGTCCGGCAATAGATG 59.057 52.381 0.00 0.00 0.00 2.90
743 767 1.376609 GCCAAGGTGTCCGGCAATAG 61.377 60.000 0.00 0.00 45.52 1.73
744 768 1.377987 GCCAAGGTGTCCGGCAATA 60.378 57.895 0.00 0.00 45.52 1.90
745 769 2.676471 GCCAAGGTGTCCGGCAAT 60.676 61.111 0.00 0.00 45.52 3.56
757 781 0.322322 TGTACAACCCTACCGCCAAG 59.678 55.000 0.00 0.00 0.00 3.61
758 782 0.322322 CTGTACAACCCTACCGCCAA 59.678 55.000 0.00 0.00 0.00 4.52
759 783 1.976898 CTGTACAACCCTACCGCCA 59.023 57.895 0.00 0.00 0.00 5.69
760 784 1.449070 GCTGTACAACCCTACCGCC 60.449 63.158 0.00 0.00 0.00 6.13
761 785 0.036671 AAGCTGTACAACCCTACCGC 60.037 55.000 0.00 0.00 0.00 5.68
762 786 2.417787 GGTAAGCTGTACAACCCTACCG 60.418 54.545 3.42 0.00 0.00 4.02
763 787 2.417787 CGGTAAGCTGTACAACCCTACC 60.418 54.545 8.54 10.62 0.00 3.18
764 788 2.884827 CGGTAAGCTGTACAACCCTAC 58.115 52.381 8.54 3.89 0.00 3.18
765 789 1.205417 GCGGTAAGCTGTACAACCCTA 59.795 52.381 8.54 0.00 44.04 3.53
766 790 0.036671 GCGGTAAGCTGTACAACCCT 60.037 55.000 8.54 0.00 44.04 4.34
767 791 2.463592 GCGGTAAGCTGTACAACCC 58.536 57.895 8.54 0.00 44.04 4.11
778 802 1.586154 CCAAACAGGCAGGCGGTAAG 61.586 60.000 0.00 0.00 0.00 2.34
780 804 2.033448 CCAAACAGGCAGGCGGTA 59.967 61.111 0.00 0.00 0.00 4.02
789 813 0.035439 ACACCCTATCGCCAAACAGG 60.035 55.000 0.00 0.00 41.84 4.00
790 814 1.821216 AACACCCTATCGCCAAACAG 58.179 50.000 0.00 0.00 0.00 3.16
791 815 2.156098 GAAACACCCTATCGCCAAACA 58.844 47.619 0.00 0.00 0.00 2.83
792 816 1.471287 GGAAACACCCTATCGCCAAAC 59.529 52.381 0.00 0.00 0.00 2.93
794 818 0.988832 AGGAAACACCCTATCGCCAA 59.011 50.000 0.00 0.00 40.05 4.52
796 820 1.202615 GGTAGGAAACACCCTATCGCC 60.203 57.143 0.00 0.00 40.60 5.54
797 821 2.235845 GGTAGGAAACACCCTATCGC 57.764 55.000 0.00 0.00 40.60 4.58
799 823 1.415289 CCCGGTAGGAAACACCCTATC 59.585 57.143 0.00 0.00 40.60 2.08
800 824 1.503800 CCCGGTAGGAAACACCCTAT 58.496 55.000 0.00 0.00 40.60 2.57
801 825 1.266867 GCCCGGTAGGAAACACCCTA 61.267 60.000 0.00 0.00 41.02 3.53
802 826 2.599757 GCCCGGTAGGAAACACCCT 61.600 63.158 0.00 0.00 41.02 4.34
803 827 2.045634 GCCCGGTAGGAAACACCC 60.046 66.667 0.00 0.00 41.02 4.61
804 828 1.376812 CAGCCCGGTAGGAAACACC 60.377 63.158 0.00 0.00 41.02 4.16
806 830 1.122632 TGACAGCCCGGTAGGAAACA 61.123 55.000 0.00 0.00 41.02 2.83
807 831 0.672711 GTGACAGCCCGGTAGGAAAC 60.673 60.000 0.00 0.00 41.02 2.78
808 832 1.122632 TGTGACAGCCCGGTAGGAAA 61.123 55.000 0.00 0.00 41.02 3.13
809 833 1.534476 TGTGACAGCCCGGTAGGAA 60.534 57.895 0.00 0.00 41.02 3.36
810 834 2.118732 TGTGACAGCCCGGTAGGA 59.881 61.111 0.00 0.00 41.02 2.94
811 835 2.264794 GTGTGACAGCCCGGTAGG 59.735 66.667 0.00 0.00 39.47 3.18
812 836 2.264794 GGTGTGACAGCCCGGTAG 59.735 66.667 2.86 0.00 0.00 3.18
813 837 3.315949 GGGTGTGACAGCCCGGTA 61.316 66.667 22.55 0.00 45.22 4.02
820 844 0.895530 ATGACGGTAGGGTGTGACAG 59.104 55.000 0.00 0.00 0.00 3.51
821 845 0.606096 CATGACGGTAGGGTGTGACA 59.394 55.000 0.00 0.00 0.00 3.58
822 846 0.108329 CCATGACGGTAGGGTGTGAC 60.108 60.000 0.00 0.00 0.00 3.67
824 848 0.108329 GTCCATGACGGTAGGGTGTG 60.108 60.000 0.00 0.00 35.57 3.82
825 849 1.262640 GGTCCATGACGGTAGGGTGT 61.263 60.000 0.00 0.00 35.57 4.16
829 853 1.134788 GTCAAGGTCCATGACGGTAGG 60.135 57.143 11.30 0.00 37.98 3.18
830 854 2.295253 GTCAAGGTCCATGACGGTAG 57.705 55.000 11.30 0.00 37.98 3.18
844 868 2.875933 TGACCTTTTTGCTACCGTCAAG 59.124 45.455 0.00 0.00 0.00 3.02
845 869 2.875933 CTGACCTTTTTGCTACCGTCAA 59.124 45.455 0.00 0.00 30.44 3.18
846 870 2.103432 TCTGACCTTTTTGCTACCGTCA 59.897 45.455 0.00 0.00 0.00 4.35
847 871 2.762745 TCTGACCTTTTTGCTACCGTC 58.237 47.619 0.00 0.00 0.00 4.79
848 872 2.922740 TCTGACCTTTTTGCTACCGT 57.077 45.000 0.00 0.00 0.00 4.83
849 873 3.127030 GGAATCTGACCTTTTTGCTACCG 59.873 47.826 0.00 0.00 0.00 4.02
850 874 3.127030 CGGAATCTGACCTTTTTGCTACC 59.873 47.826 0.00 0.00 0.00 3.18
851 875 4.000988 TCGGAATCTGACCTTTTTGCTAC 58.999 43.478 0.00 0.00 0.00 3.58
852 876 4.280436 TCGGAATCTGACCTTTTTGCTA 57.720 40.909 0.00 0.00 0.00 3.49
853 877 3.140325 TCGGAATCTGACCTTTTTGCT 57.860 42.857 0.00 0.00 0.00 3.91
854 878 3.915437 TTCGGAATCTGACCTTTTTGC 57.085 42.857 0.00 0.00 0.00 3.68
856 880 9.256477 GTAAAAATTTCGGAATCTGACCTTTTT 57.744 29.630 19.03 19.03 0.00 1.94
857 881 8.417884 TGTAAAAATTTCGGAATCTGACCTTTT 58.582 29.630 0.00 1.43 0.00 2.27
859 883 7.519032 TGTAAAAATTTCGGAATCTGACCTT 57.481 32.000 0.00 0.00 0.00 3.50
860 884 7.519032 TTGTAAAAATTTCGGAATCTGACCT 57.481 32.000 0.00 0.00 0.00 3.85
861 885 7.865889 AGTTTGTAAAAATTTCGGAATCTGACC 59.134 33.333 0.00 0.00 0.00 4.02
862 886 8.797266 AGTTTGTAAAAATTTCGGAATCTGAC 57.203 30.769 0.00 0.00 0.00 3.51
864 888 9.341899 CCTAGTTTGTAAAAATTTCGGAATCTG 57.658 33.333 0.00 0.00 0.00 2.90
868 892 9.069082 TGATCCTAGTTTGTAAAAATTTCGGAA 57.931 29.630 0.00 0.00 0.00 4.30
870 894 8.726988 TCTGATCCTAGTTTGTAAAAATTTCGG 58.273 33.333 0.00 0.00 0.00 4.30
875 899 9.319143 CGAGATCTGATCCTAGTTTGTAAAAAT 57.681 33.333 13.83 0.00 0.00 1.82
876 900 8.311836 ACGAGATCTGATCCTAGTTTGTAAAAA 58.688 33.333 13.83 0.00 0.00 1.94
877 901 7.837863 ACGAGATCTGATCCTAGTTTGTAAAA 58.162 34.615 13.83 0.00 0.00 1.52
878 902 7.406031 ACGAGATCTGATCCTAGTTTGTAAA 57.594 36.000 13.83 0.00 0.00 2.01
879 903 7.122204 TGAACGAGATCTGATCCTAGTTTGTAA 59.878 37.037 13.83 4.06 0.00 2.41
880 904 6.602009 TGAACGAGATCTGATCCTAGTTTGTA 59.398 38.462 13.83 6.52 0.00 2.41
881 905 5.419155 TGAACGAGATCTGATCCTAGTTTGT 59.581 40.000 13.83 2.90 0.00 2.83
882 906 5.895928 TGAACGAGATCTGATCCTAGTTTG 58.104 41.667 13.83 2.30 0.00 2.93
883 907 6.334202 GTTGAACGAGATCTGATCCTAGTTT 58.666 40.000 13.83 1.38 0.00 2.66
884 908 5.163499 GGTTGAACGAGATCTGATCCTAGTT 60.163 44.000 13.83 15.81 0.00 2.24
885 909 4.339814 GGTTGAACGAGATCTGATCCTAGT 59.660 45.833 13.83 8.84 0.00 2.57
886 910 4.582656 AGGTTGAACGAGATCTGATCCTAG 59.417 45.833 13.83 8.26 0.00 3.02
887 911 4.537751 AGGTTGAACGAGATCTGATCCTA 58.462 43.478 13.83 0.00 0.00 2.94
888 912 3.370104 AGGTTGAACGAGATCTGATCCT 58.630 45.455 13.83 2.03 0.00 3.24
889 913 3.712187 GAGGTTGAACGAGATCTGATCC 58.288 50.000 13.83 5.25 0.00 3.36
890 914 3.065510 TCGAGGTTGAACGAGATCTGATC 59.934 47.826 9.65 9.65 34.49 2.92
891 915 3.017442 TCGAGGTTGAACGAGATCTGAT 58.983 45.455 0.00 0.00 34.49 2.90
892 916 2.433436 TCGAGGTTGAACGAGATCTGA 58.567 47.619 0.00 0.00 34.49 3.27
893 917 2.921634 TCGAGGTTGAACGAGATCTG 57.078 50.000 0.00 0.00 34.49 2.90
899 923 2.611971 CCCATTTCTCGAGGTTGAACGA 60.612 50.000 13.56 0.00 37.03 3.85
900 924 1.732259 CCCATTTCTCGAGGTTGAACG 59.268 52.381 13.56 0.00 0.00 3.95
901 925 2.742589 GACCCATTTCTCGAGGTTGAAC 59.257 50.000 13.56 0.00 31.10 3.18
902 926 2.370519 TGACCCATTTCTCGAGGTTGAA 59.629 45.455 13.56 3.40 31.10 2.69
903 927 1.974957 TGACCCATTTCTCGAGGTTGA 59.025 47.619 13.56 0.00 31.10 3.18
904 928 2.472695 TGACCCATTTCTCGAGGTTG 57.527 50.000 13.56 7.80 31.10 3.77
905 929 3.502123 TTTGACCCATTTCTCGAGGTT 57.498 42.857 13.56 0.00 31.10 3.50
906 930 3.146847 GTTTTGACCCATTTCTCGAGGT 58.853 45.455 13.56 1.28 34.57 3.85
907 931 3.146066 TGTTTTGACCCATTTCTCGAGG 58.854 45.455 13.56 0.00 0.00 4.63
908 932 3.189287 CCTGTTTTGACCCATTTCTCGAG 59.811 47.826 5.93 5.93 0.00 4.04
909 933 3.146066 CCTGTTTTGACCCATTTCTCGA 58.854 45.455 0.00 0.00 0.00 4.04
910 934 3.146066 TCCTGTTTTGACCCATTTCTCG 58.854 45.455 0.00 0.00 0.00 4.04
911 935 5.529581 TTTCCTGTTTTGACCCATTTCTC 57.470 39.130 0.00 0.00 0.00 2.87
912 936 5.948742 TTTTCCTGTTTTGACCCATTTCT 57.051 34.783 0.00 0.00 0.00 2.52
913 937 7.416817 CAAATTTTCCTGTTTTGACCCATTTC 58.583 34.615 0.00 0.00 33.24 2.17
914 938 6.183360 GCAAATTTTCCTGTTTTGACCCATTT 60.183 34.615 0.00 0.00 33.24 2.32
915 939 5.299028 GCAAATTTTCCTGTTTTGACCCATT 59.701 36.000 0.00 0.00 33.24 3.16
916 940 4.821260 GCAAATTTTCCTGTTTTGACCCAT 59.179 37.500 0.00 0.00 33.24 4.00
917 941 4.195416 GCAAATTTTCCTGTTTTGACCCA 58.805 39.130 0.00 0.00 33.24 4.51
918 942 3.563808 GGCAAATTTTCCTGTTTTGACCC 59.436 43.478 0.00 0.00 33.22 4.46
919 943 4.195416 TGGCAAATTTTCCTGTTTTGACC 58.805 39.130 8.37 0.00 37.53 4.02
920 944 5.333263 CGATGGCAAATTTTCCTGTTTTGAC 60.333 40.000 8.37 0.00 38.56 3.18
921 945 4.749099 CGATGGCAAATTTTCCTGTTTTGA 59.251 37.500 8.37 0.00 33.24 2.69
922 946 4.749099 TCGATGGCAAATTTTCCTGTTTTG 59.251 37.500 8.37 0.00 34.30 2.44
923 947 4.749598 GTCGATGGCAAATTTTCCTGTTTT 59.250 37.500 8.37 0.00 0.00 2.43
924 948 4.306600 GTCGATGGCAAATTTTCCTGTTT 58.693 39.130 8.37 0.00 0.00 2.83
925 949 3.306019 GGTCGATGGCAAATTTTCCTGTT 60.306 43.478 8.37 0.00 0.00 3.16
926 950 2.231235 GGTCGATGGCAAATTTTCCTGT 59.769 45.455 8.37 0.00 0.00 4.00
927 951 2.731968 CGGTCGATGGCAAATTTTCCTG 60.732 50.000 8.37 0.00 0.00 3.86
928 952 1.472480 CGGTCGATGGCAAATTTTCCT 59.528 47.619 8.37 0.00 0.00 3.36
929 953 1.908065 CGGTCGATGGCAAATTTTCC 58.092 50.000 0.00 0.00 0.00 3.13
930 954 1.135402 AGCGGTCGATGGCAAATTTTC 60.135 47.619 12.34 0.00 0.00 2.29
931 955 0.887933 AGCGGTCGATGGCAAATTTT 59.112 45.000 12.34 0.00 0.00 1.82
932 956 0.171007 CAGCGGTCGATGGCAAATTT 59.829 50.000 12.34 0.00 0.00 1.82
933 957 1.802636 CAGCGGTCGATGGCAAATT 59.197 52.632 12.34 0.00 0.00 1.82
934 958 2.764314 GCAGCGGTCGATGGCAAAT 61.764 57.895 10.57 0.00 31.39 2.32
935 959 3.430862 GCAGCGGTCGATGGCAAA 61.431 61.111 10.57 0.00 31.39 3.68
939 963 2.587322 TAAAGGGCAGCGGTCGATGG 62.587 60.000 10.57 0.00 31.39 3.51
940 964 0.532862 ATAAAGGGCAGCGGTCGATG 60.533 55.000 4.13 4.13 34.24 3.84
941 965 0.249911 GATAAAGGGCAGCGGTCGAT 60.250 55.000 0.00 0.00 0.00 3.59
942 966 1.143183 GATAAAGGGCAGCGGTCGA 59.857 57.895 0.00 0.00 0.00 4.20
943 967 1.153449 TGATAAAGGGCAGCGGTCG 60.153 57.895 0.00 0.00 0.00 4.79
944 968 0.107654 ACTGATAAAGGGCAGCGGTC 60.108 55.000 0.00 0.00 35.57 4.79
945 969 0.107654 GACTGATAAAGGGCAGCGGT 60.108 55.000 0.00 0.00 35.57 5.68
946 970 0.815615 GGACTGATAAAGGGCAGCGG 60.816 60.000 0.00 0.00 35.57 5.52
947 971 0.107703 TGGACTGATAAAGGGCAGCG 60.108 55.000 0.00 0.00 35.57 5.18
948 972 2.225467 GATGGACTGATAAAGGGCAGC 58.775 52.381 0.00 0.00 35.57 5.25
949 973 2.808202 CGGATGGACTGATAAAGGGCAG 60.808 54.545 0.00 0.00 38.10 4.85
950 974 1.140852 CGGATGGACTGATAAAGGGCA 59.859 52.381 0.00 0.00 0.00 5.36
951 975 1.141053 ACGGATGGACTGATAAAGGGC 59.859 52.381 0.00 0.00 0.00 5.19
952 976 2.545952 CGACGGATGGACTGATAAAGGG 60.546 54.545 0.00 0.00 0.00 3.95
953 977 2.100916 ACGACGGATGGACTGATAAAGG 59.899 50.000 0.00 0.00 0.00 3.11
954 978 3.372954 GACGACGGATGGACTGATAAAG 58.627 50.000 0.00 0.00 0.00 1.85
955 979 2.223409 CGACGACGGATGGACTGATAAA 60.223 50.000 0.00 0.00 35.72 1.40
1066 1090 3.297620 GTGGGTTGGGCTGCACTG 61.298 66.667 2.50 0.00 0.00 3.66
1126 1150 2.863879 AGTATAGAGTAGTGGGTGGGGT 59.136 50.000 0.00 0.00 0.00 4.95
1354 1378 3.067684 AGGTAACAATGGAAACGAGGG 57.932 47.619 0.00 0.00 41.41 4.30
1395 1419 9.751542 CTTGTATATCCGAGAGAAACTAACAAT 57.248 33.333 0.00 0.00 0.00 2.71
1406 1430 5.304614 TCTTTTCCCCTTGTATATCCGAGAG 59.695 44.000 0.00 0.00 0.00 3.20
1411 1435 5.104067 ACCACTCTTTTCCCCTTGTATATCC 60.104 44.000 0.00 0.00 0.00 2.59
1457 1487 9.805966 AATTTTCGAAACAAAGTCAAAGAAAAC 57.194 25.926 10.79 0.00 38.56 2.43
1567 1597 2.627933 AGTTGCTACCCCCAAACTAGA 58.372 47.619 0.00 0.00 0.00 2.43
1578 1608 2.552031 GGGATCGAAGAAGTTGCTACC 58.448 52.381 0.00 0.00 43.58 3.18
1601 1639 2.436109 GTGGTGCATGGTGAGGGT 59.564 61.111 0.00 0.00 0.00 4.34
1623 1661 3.512516 GGCCAGCCATGTCGAAGC 61.513 66.667 3.12 0.00 35.81 3.86
1665 1703 1.945819 GCAAGGAAATGCAGACGGAGA 60.946 52.381 0.00 0.00 45.70 3.71
1666 1704 0.449388 GCAAGGAAATGCAGACGGAG 59.551 55.000 0.00 0.00 45.70 4.63
1667 1705 1.298157 CGCAAGGAAATGCAGACGGA 61.298 55.000 0.00 0.00 46.76 4.69
1668 1706 1.135315 CGCAAGGAAATGCAGACGG 59.865 57.895 0.00 0.00 46.76 4.79
1671 1709 0.960364 GGGACGCAAGGAAATGCAGA 60.960 55.000 0.00 0.00 46.76 4.26
1722 1765 4.693915 CCTTCTCCCCCACCCCCA 62.694 72.222 0.00 0.00 0.00 4.96
1728 1771 4.649705 TGACCGCCTTCTCCCCCA 62.650 66.667 0.00 0.00 0.00 4.96
1738 1782 0.751643 ACATATGCCCTTTGACCGCC 60.752 55.000 1.58 0.00 0.00 6.13
1770 1814 1.074775 GTGTGCATGACCAAGGGGA 59.925 57.895 0.00 0.00 38.05 4.81
1828 1873 4.397417 CAGAGAAAAGGCCAGGAAATACTG 59.603 45.833 5.01 0.90 38.21 2.74
1925 1974 3.181497 GGTACGCTGCACAATCATTTGAT 60.181 43.478 0.00 0.00 36.64 2.57
1942 1991 5.120208 CACTTGTTAATTCCTCAGTGGTACG 59.880 44.000 0.00 0.00 37.07 3.67
2041 2090 4.539083 ACGCACTGGCACGAACCA 62.539 61.111 2.83 0.00 41.24 3.67
2042 2091 4.012895 CACGCACTGGCACGAACC 62.013 66.667 2.83 0.00 41.24 3.62
2145 2217 0.574922 CAAACCGAAAACGCTTTGCC 59.425 50.000 0.00 0.00 0.00 4.52
2172 2244 5.722021 ACCAACTTGCCACCTAAAATAAG 57.278 39.130 0.00 0.00 0.00 1.73
2176 2248 3.257127 GCATACCAACTTGCCACCTAAAA 59.743 43.478 0.00 0.00 32.66 1.52
2201 2273 3.460825 AGGCAGTTCCCTAGTTTATGGA 58.539 45.455 0.00 0.00 32.11 3.41
2239 2574 8.407832 GGCTTAACTTGTAAGAACTACCAAAAA 58.592 33.333 0.00 0.00 0.00 1.94
2345 2680 2.101640 AACCCCAATCCAAAACTGCT 57.898 45.000 0.00 0.00 0.00 4.24
2348 2683 4.810345 TGAACTAACCCCAATCCAAAACT 58.190 39.130 0.00 0.00 0.00 2.66
2355 2690 4.335594 CGGAGATTTGAACTAACCCCAATC 59.664 45.833 0.00 0.00 0.00 2.67
2357 2692 3.328343 TCGGAGATTTGAACTAACCCCAA 59.672 43.478 0.00 0.00 0.00 4.12
2373 2708 4.277672 CCGATCCATAGTAAGTTTCGGAGA 59.722 45.833 2.44 0.00 45.60 3.71
2376 2711 4.547532 CTCCGATCCATAGTAAGTTTCGG 58.452 47.826 2.20 2.20 44.46 4.30
2380 2715 5.703310 ACTACCTCCGATCCATAGTAAGTT 58.297 41.667 0.00 0.00 0.00 2.66
2386 2721 7.941431 AAATACTACTACCTCCGATCCATAG 57.059 40.000 0.00 0.00 0.00 2.23
2413 2748 4.736165 GCAACTGGCAAAGGTGTG 57.264 55.556 5.67 0.00 46.23 3.82
2467 2804 7.667575 AGCCCTCCTGTATAACTATATCATG 57.332 40.000 0.00 0.00 0.00 3.07
2480 2817 0.704076 ATTGCCAAAGCCCTCCTGTA 59.296 50.000 0.00 0.00 38.69 2.74
2481 2818 0.613012 GATTGCCAAAGCCCTCCTGT 60.613 55.000 0.00 0.00 38.69 4.00
2482 2819 0.324091 AGATTGCCAAAGCCCTCCTG 60.324 55.000 0.00 0.00 38.69 3.86
2551 3349 9.638239 AACTTAAGCACATAACCAAATAACATG 57.362 29.630 1.29 0.00 0.00 3.21
2588 3386 6.249260 CGAAATTGCTTGCAGTATAGAAACAC 59.751 38.462 0.00 0.00 0.00 3.32
2605 3403 9.670180 GCATAGTTTTGTAATTAACGAAATTGC 57.330 29.630 9.68 8.99 42.23 3.56
2799 3599 3.904339 GCCCTGGTCCTTGAATCTAGATA 59.096 47.826 5.46 0.00 0.00 1.98
2892 3697 6.899393 ATTTGAACTTGCAAGAATACTCCA 57.101 33.333 32.50 14.65 0.00 3.86
2894 3699 8.801715 TCAAATTTGAACTTGCAAGAATACTC 57.198 30.769 32.50 18.41 33.55 2.59
2964 3769 9.838339 CAGTAGAATTTACCACCAGATAAGAAT 57.162 33.333 0.00 0.00 0.00 2.40
3167 3973 3.724508 AAGTGCAGAGGTCGATATGAG 57.275 47.619 0.00 0.00 0.00 2.90
3229 4111 5.880054 TTTACTGACTAGGTGGTACGTAC 57.120 43.478 17.56 17.56 0.00 3.67
3335 4217 3.502123 ACAGCTTGCTTAACACCCTTA 57.498 42.857 0.00 0.00 0.00 2.69
3650 4535 6.831353 ACTAGTACTAGTGAAGCATCATCAGT 59.169 38.462 30.33 6.39 44.11 3.41
3671 4556 9.130312 GTGTACTGTTCAGAGTGAATTTACTAG 57.870 37.037 2.38 0.00 38.79 2.57
3674 4559 7.652105 TGAGTGTACTGTTCAGAGTGAATTTAC 59.348 37.037 6.83 0.00 38.79 2.01
3675 4560 7.722363 TGAGTGTACTGTTCAGAGTGAATTTA 58.278 34.615 6.83 0.00 38.79 1.40
3676 4561 6.582636 TGAGTGTACTGTTCAGAGTGAATTT 58.417 36.000 6.83 0.00 38.79 1.82
3677 4562 6.161855 TGAGTGTACTGTTCAGAGTGAATT 57.838 37.500 6.83 0.00 38.79 2.17
3678 4563 5.791336 TGAGTGTACTGTTCAGAGTGAAT 57.209 39.130 6.83 0.00 38.79 2.57
3679 4564 5.592104 TTGAGTGTACTGTTCAGAGTGAA 57.408 39.130 6.83 0.00 33.32 3.18
3681 4566 5.352284 AGTTTGAGTGTACTGTTCAGAGTG 58.648 41.667 6.83 0.00 0.00 3.51
3682 4567 5.599999 AGTTTGAGTGTACTGTTCAGAGT 57.400 39.130 6.83 0.00 0.00 3.24
3683 4568 6.276847 AGAAGTTTGAGTGTACTGTTCAGAG 58.723 40.000 6.83 0.00 0.00 3.35
3684 4569 6.222038 AGAAGTTTGAGTGTACTGTTCAGA 57.778 37.500 6.83 0.00 0.00 3.27
3685 4570 5.463724 GGAGAAGTTTGAGTGTACTGTTCAG 59.536 44.000 0.00 0.00 0.00 3.02
3715 4600 1.470996 TTGCACCCTGAAATGTGGCC 61.471 55.000 0.00 0.00 33.08 5.36
3729 4615 1.148310 TTAGCGTTCTCTGCTTGCAC 58.852 50.000 0.00 0.00 43.71 4.57
3764 4650 9.516091 GAACTTAATTTTGAAACATGCGATTTC 57.484 29.630 0.00 0.00 36.73 2.17
3768 4654 8.586570 AATGAACTTAATTTTGAAACATGCGA 57.413 26.923 0.00 0.00 0.00 5.10
3769 4655 9.094459 CAAATGAACTTAATTTTGAAACATGCG 57.906 29.630 0.00 0.00 32.17 4.73
3770 4656 9.384682 CCAAATGAACTTAATTTTGAAACATGC 57.615 29.630 0.00 0.00 32.17 4.06
3804 4690 9.194972 CCTATCTCATCAATAGCACCTCTATTA 57.805 37.037 0.00 0.00 44.08 0.98
3812 4698 7.835822 ACAGATACCTATCTCATCAATAGCAC 58.164 38.462 0.00 0.00 40.91 4.40
3885 4771 9.073475 ACAAACATCCTTAGCAGTTGTAAATTA 57.927 29.630 0.00 0.00 0.00 1.40
3886 4772 7.951591 ACAAACATCCTTAGCAGTTGTAAATT 58.048 30.769 0.00 0.00 0.00 1.82
3887 4773 7.524717 ACAAACATCCTTAGCAGTTGTAAAT 57.475 32.000 0.00 0.00 0.00 1.40
3888 4774 6.952773 ACAAACATCCTTAGCAGTTGTAAA 57.047 33.333 0.00 0.00 0.00 2.01
3889 4775 6.952773 AACAAACATCCTTAGCAGTTGTAA 57.047 33.333 0.00 0.00 0.00 2.41
3890 4776 6.952773 AAACAAACATCCTTAGCAGTTGTA 57.047 33.333 0.00 0.00 0.00 2.41
3891 4777 5.852282 AAACAAACATCCTTAGCAGTTGT 57.148 34.783 0.00 0.00 0.00 3.32
3892 4778 6.507023 AGAAAACAAACATCCTTAGCAGTTG 58.493 36.000 0.00 0.00 0.00 3.16
3893 4779 6.715347 AGAAAACAAACATCCTTAGCAGTT 57.285 33.333 0.00 0.00 0.00 3.16
3894 4780 6.715347 AAGAAAACAAACATCCTTAGCAGT 57.285 33.333 0.00 0.00 0.00 4.40
3895 4781 9.528018 TTTTAAGAAAACAAACATCCTTAGCAG 57.472 29.630 0.00 0.00 0.00 4.24
3896 4782 9.528018 CTTTTAAGAAAACAAACATCCTTAGCA 57.472 29.630 0.00 0.00 0.00 3.49
3897 4783 9.744468 TCTTTTAAGAAAACAAACATCCTTAGC 57.256 29.630 0.00 0.00 30.73 3.09
3901 4787 9.533253 CATGTCTTTTAAGAAAACAAACATCCT 57.467 29.630 0.00 0.00 36.68 3.24
3902 4788 8.764287 CCATGTCTTTTAAGAAAACAAACATCC 58.236 33.333 0.00 0.00 36.68 3.51
3903 4789 8.764287 CCCATGTCTTTTAAGAAAACAAACATC 58.236 33.333 0.00 0.00 36.68 3.06
3904 4790 8.264347 ACCCATGTCTTTTAAGAAAACAAACAT 58.736 29.630 0.00 0.00 36.68 2.71
3905 4791 7.616313 ACCCATGTCTTTTAAGAAAACAAACA 58.384 30.769 0.00 0.00 36.68 2.83
3906 4792 9.758651 ATACCCATGTCTTTTAAGAAAACAAAC 57.241 29.630 0.00 0.00 36.68 2.93
3908 4794 9.974980 GAATACCCATGTCTTTTAAGAAAACAA 57.025 29.630 0.00 0.00 36.68 2.83
3909 4795 8.581578 GGAATACCCATGTCTTTTAAGAAAACA 58.418 33.333 0.00 0.00 33.87 2.83
3910 4796 8.981724 GGAATACCCATGTCTTTTAAGAAAAC 57.018 34.615 0.00 0.00 33.87 2.43
3939 4825 4.592942 AGAATATCAGCAGTTTGGCAGAA 58.407 39.130 0.00 0.00 32.87 3.02
3997 4883 6.017934 CCGTTGACACCTTATCCATCTTATTG 60.018 42.308 0.00 0.00 0.00 1.90
4021 4907 0.317479 ACACGTACTCTTGGAGTGCC 59.683 55.000 10.06 1.02 43.30 5.01
4097 4987 5.001232 GTCACCAATAATACACACTGTGGT 58.999 41.667 13.77 9.59 37.94 4.16
4126 5016 5.536161 ACAAAAGGTTCATAATGCAGTCAGT 59.464 36.000 0.00 0.00 0.00 3.41
4248 5139 8.110860 ACTATGAGTGGACAAAAATGTTTAGG 57.889 34.615 0.00 0.00 0.00 2.69
4295 5189 0.815734 GCTCCGGTAGTTCTGCAGTA 59.184 55.000 14.67 0.00 0.00 2.74
4415 5324 2.418368 TGGGAAATGAATCGGTCCTG 57.582 50.000 0.00 0.00 0.00 3.86
4651 5560 8.522830 CCAACAACATGATAACTAAGTGGAAAT 58.477 33.333 0.00 0.00 0.00 2.17
4696 5605 8.586570 AAATAAGCGTCAATTTTCATTGTTCA 57.413 26.923 0.00 0.00 40.78 3.18
4749 5658 6.015603 TCACAGCAACAAAAATACATCCATGA 60.016 34.615 0.00 0.00 0.00 3.07
4761 5676 3.088532 AGTTCCACTCACAGCAACAAAA 58.911 40.909 0.00 0.00 0.00 2.44
4775 5690 6.273071 ACTCACAAAATAGCAAAAGTTCCAC 58.727 36.000 0.00 0.00 0.00 4.02
4800 5723 9.740239 GTTGCATATTCTTCATGTTGTAATCAT 57.260 29.630 0.00 0.00 0.00 2.45
4842 5795 3.644606 CTGGGCAGGCTCCAGTGT 61.645 66.667 12.89 0.00 44.97 3.55
4912 5865 2.108250 ACTTGTGGCCTATCTTGTGGTT 59.892 45.455 3.32 0.00 0.00 3.67
4914 5867 2.086869 CACTTGTGGCCTATCTTGTGG 58.913 52.381 3.32 0.00 0.00 4.17
4944 5898 0.836606 TGCCATGGCTTCGGATAAGA 59.163 50.000 35.53 10.21 42.51 2.10
4992 5946 3.041940 GGCGGTGAACGTGGTGAG 61.042 66.667 0.00 0.00 46.52 3.51
5000 5954 0.591659 GGTTCTTTCTGGCGGTGAAC 59.408 55.000 15.62 15.62 37.04 3.18
5100 6060 2.451294 ATGGATGGGGAGGAGGGC 60.451 66.667 0.00 0.00 0.00 5.19
5598 6558 3.306595 CTGCCTGAAGAGCGCCAGA 62.307 63.158 12.27 0.00 32.37 3.86
5611 6571 1.040646 TCGAACTCTTGACACTGCCT 58.959 50.000 0.00 0.00 0.00 4.75
5619 6579 1.847818 CCACAACGTCGAACTCTTGA 58.152 50.000 0.00 0.00 0.00 3.02
5622 6582 1.660575 CGCCACAACGTCGAACTCT 60.661 57.895 0.00 0.00 0.00 3.24
5624 6584 2.105528 ACGCCACAACGTCGAACT 59.894 55.556 0.00 0.00 44.43 3.01
5652 6612 2.543802 CCTCGAGAGCGCCACGATA 61.544 63.158 15.71 1.82 37.46 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.