Multiple sequence alignment - TraesCS5A01G377500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G377500 chr5A 100.000 3621 0 0 1 3621 574934809 574931189 0.000000e+00 6687.0
1 TraesCS5A01G377500 chr5A 92.000 75 6 0 13 87 548460495 548460421 4.940000e-19 106.0
2 TraesCS5A01G377500 chr5D 89.975 2853 157 58 220 3039 457009648 457006892 0.000000e+00 3565.0
3 TraesCS5A01G377500 chr5D 92.254 426 23 4 3205 3621 361189190 361188766 2.410000e-166 595.0
4 TraesCS5A01G377500 chr5D 93.976 83 5 0 5 87 434443848 434443766 3.800000e-25 126.0
5 TraesCS5A01G377500 chr5B 89.555 1618 79 42 230 1818 558872904 558871348 0.000000e+00 1969.0
6 TraesCS5A01G377500 chr5B 91.625 1206 53 19 1859 3039 558871338 558870156 0.000000e+00 1624.0
7 TraesCS5A01G377500 chr5B 92.891 422 22 4 3207 3621 13520926 13521346 1.110000e-169 606.0
8 TraesCS5A01G377500 chr3D 95.215 418 12 3 3211 3621 433188536 433188120 0.000000e+00 654.0
9 TraesCS5A01G377500 chr3D 94.624 372 13 4 3256 3621 419592923 419592553 1.460000e-158 569.0
10 TraesCS5A01G377500 chr3D 82.443 131 19 2 1563 1691 63779611 63779739 1.060000e-20 111.0
11 TraesCS5A01G377500 chr3A 94.353 425 16 4 3204 3621 54944262 54943839 0.000000e+00 645.0
12 TraesCS5A01G377500 chr3A 90.805 87 8 0 1 87 595056835 595056921 2.280000e-22 117.0
13 TraesCS5A01G377500 chr1A 91.841 429 27 5 3200 3621 85320422 85319995 3.110000e-165 592.0
14 TraesCS5A01G377500 chr1A 91.274 424 29 4 3205 3621 493322185 493321763 4.060000e-159 571.0
15 TraesCS5A01G377500 chr2D 91.745 424 26 6 3205 3621 358024465 358024886 6.740000e-162 580.0
16 TraesCS5A01G377500 chr2D 91.566 83 7 0 5 87 470269839 470269757 8.220000e-22 115.0
17 TraesCS5A01G377500 chr2D 91.139 79 7 0 8 86 50961800 50961878 1.370000e-19 108.0
18 TraesCS5A01G377500 chr2D 86.957 69 9 0 2246 2314 511439062 511439130 1.080000e-10 78.7
19 TraesCS5A01G377500 chr2B 90.476 336 23 5 3292 3621 770086490 770086822 5.550000e-118 435.0
20 TraesCS5A01G377500 chr2B 86.957 69 9 0 2246 2314 600442763 600442831 1.080000e-10 78.7
21 TraesCS5A01G377500 chr7D 95.238 84 4 0 4 87 224468030 224467947 2.270000e-27 134.0
22 TraesCS5A01G377500 chr7D 89.655 87 9 0 1 87 373235135 373235049 1.060000e-20 111.0
23 TraesCS5A01G377500 chr7D 89.655 87 9 0 1 87 465570577 465570663 1.060000e-20 111.0
24 TraesCS5A01G377500 chr7D 88.372 86 9 1 2 87 417607437 417607353 6.400000e-18 102.0
25 TraesCS5A01G377500 chr1D 83.824 68 10 1 173 239 392946998 392946931 3.020000e-06 63.9
26 TraesCS5A01G377500 chr2A 80.000 80 16 0 88 167 676175612 676175533 3.900000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G377500 chr5A 574931189 574934809 3620 True 6687.0 6687 100.000 1 3621 1 chr5A.!!$R2 3620
1 TraesCS5A01G377500 chr5D 457006892 457009648 2756 True 3565.0 3565 89.975 220 3039 1 chr5D.!!$R3 2819
2 TraesCS5A01G377500 chr5B 558870156 558872904 2748 True 1796.5 1969 90.590 230 3039 2 chr5B.!!$R1 2809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 725 0.026285 GCACTTATTACAGGTGCGCG 59.974 55.0 0.0 0.0 44.91 6.86 F
904 938 0.179124 GATCGAAGGTCGCTTCTGCT 60.179 55.0 0.0 0.0 40.21 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 1572 0.249398 ATCCCGAGGAACGAACCAAG 59.751 55.0 0.0 0.0 45.77 3.61 R
2844 2912 0.388907 ATGCAATGTTCTTGGCACGC 60.389 50.0 0.0 0.0 39.34 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.272146 GCTGGGCCATTTCGGAGA 59.728 61.111 6.72 0.00 36.56 3.71
27 28 1.821332 GCTGGGCCATTTCGGAGAG 60.821 63.158 6.72 0.00 38.43 3.20
28 29 1.821332 CTGGGCCATTTCGGAGAGC 60.821 63.158 6.72 0.00 38.43 4.09
29 30 2.517166 GGGCCATTTCGGAGAGCC 60.517 66.667 4.39 0.00 42.52 4.70
30 31 2.592308 GGCCATTTCGGAGAGCCT 59.408 61.111 0.00 0.00 40.45 4.58
31 32 1.077429 GGCCATTTCGGAGAGCCTT 60.077 57.895 0.00 0.00 40.45 4.35
32 33 1.098129 GGCCATTTCGGAGAGCCTTC 61.098 60.000 0.00 0.00 40.45 3.46
33 34 0.107459 GCCATTTCGGAGAGCCTTCT 60.107 55.000 0.00 0.00 38.43 2.85
34 35 1.661341 CCATTTCGGAGAGCCTTCTG 58.339 55.000 0.00 0.00 38.43 3.02
35 36 1.012841 CATTTCGGAGAGCCTTCTGC 58.987 55.000 0.00 0.00 38.43 4.26
36 37 0.107459 ATTTCGGAGAGCCTTCTGCC 60.107 55.000 0.00 0.00 42.71 4.85
37 38 2.507110 TTTCGGAGAGCCTTCTGCCG 62.507 60.000 0.00 0.00 42.71 5.69
38 39 3.452786 CGGAGAGCCTTCTGCCGA 61.453 66.667 0.00 0.00 42.06 5.54
39 40 2.185608 GGAGAGCCTTCTGCCGAC 59.814 66.667 0.00 0.00 42.71 4.79
40 41 2.202676 GAGAGCCTTCTGCCGACG 60.203 66.667 0.00 0.00 42.71 5.12
41 42 4.443266 AGAGCCTTCTGCCGACGC 62.443 66.667 0.00 0.00 42.71 5.19
42 43 4.742201 GAGCCTTCTGCCGACGCA 62.742 66.667 0.00 0.00 44.78 5.24
64 65 4.183686 CCGGCGGTCGACGTATGT 62.184 66.667 19.97 0.00 46.73 2.29
65 66 2.947621 CGGCGGTCGACGTATGTG 60.948 66.667 10.72 0.00 46.52 3.21
66 67 2.486504 GGCGGTCGACGTATGTGA 59.513 61.111 9.92 0.00 46.52 3.58
67 68 1.870901 GGCGGTCGACGTATGTGAC 60.871 63.158 9.92 0.88 46.52 3.67
68 69 1.136147 GCGGTCGACGTATGTGACT 59.864 57.895 9.92 0.00 46.52 3.41
69 70 0.455633 GCGGTCGACGTATGTGACTT 60.456 55.000 9.92 0.00 46.52 3.01
70 71 1.256652 CGGTCGACGTATGTGACTTG 58.743 55.000 9.92 6.75 37.93 3.16
71 72 0.989890 GGTCGACGTATGTGACTTGC 59.010 55.000 9.92 0.00 33.21 4.01
72 73 0.989890 GTCGACGTATGTGACTTGCC 59.010 55.000 0.00 0.00 0.00 4.52
73 74 0.455464 TCGACGTATGTGACTTGCCG 60.455 55.000 0.00 0.00 0.00 5.69
74 75 1.708027 GACGTATGTGACTTGCCGC 59.292 57.895 0.00 0.00 0.00 6.53
75 76 1.005512 ACGTATGTGACTTGCCGCA 60.006 52.632 0.00 0.00 0.00 5.69
76 77 1.014044 ACGTATGTGACTTGCCGCAG 61.014 55.000 0.00 0.00 0.00 5.18
77 78 1.425428 GTATGTGACTTGCCGCAGC 59.575 57.895 0.00 0.00 40.48 5.25
78 79 1.021390 GTATGTGACTTGCCGCAGCT 61.021 55.000 0.00 0.00 40.80 4.24
79 80 0.740868 TATGTGACTTGCCGCAGCTC 60.741 55.000 0.00 0.00 40.80 4.09
80 81 3.782244 GTGACTTGCCGCAGCTCG 61.782 66.667 0.00 0.00 40.80 5.03
81 82 4.299547 TGACTTGCCGCAGCTCGT 62.300 61.111 0.00 0.00 40.80 4.18
82 83 3.044305 GACTTGCCGCAGCTCGTT 61.044 61.111 0.00 0.00 40.80 3.85
83 84 3.016474 GACTTGCCGCAGCTCGTTC 62.016 63.158 0.00 0.00 40.80 3.95
84 85 4.139420 CTTGCCGCAGCTCGTTCG 62.139 66.667 0.00 0.00 40.80 3.95
88 89 4.514577 CCGCAGCTCGTTCGGGAT 62.515 66.667 0.00 0.00 39.52 3.85
89 90 3.257561 CGCAGCTCGTTCGGGATG 61.258 66.667 5.96 5.96 0.00 3.51
90 91 2.892425 GCAGCTCGTTCGGGATGG 60.892 66.667 12.05 0.00 0.00 3.51
91 92 2.202932 CAGCTCGTTCGGGATGGG 60.203 66.667 2.25 0.00 0.00 4.00
92 93 2.683933 AGCTCGTTCGGGATGGGT 60.684 61.111 0.00 0.00 0.00 4.51
93 94 2.267961 GCTCGTTCGGGATGGGTT 59.732 61.111 0.00 0.00 0.00 4.11
94 95 2.106683 GCTCGTTCGGGATGGGTTG 61.107 63.158 0.00 0.00 0.00 3.77
95 96 2.046700 TCGTTCGGGATGGGTTGC 60.047 61.111 0.00 0.00 0.00 4.17
96 97 2.359354 CGTTCGGGATGGGTTGCA 60.359 61.111 0.00 0.00 0.00 4.08
97 98 1.748879 CGTTCGGGATGGGTTGCAT 60.749 57.895 0.00 0.00 0.00 3.96
98 99 1.809207 GTTCGGGATGGGTTGCATG 59.191 57.895 0.00 0.00 0.00 4.06
99 100 1.379710 TTCGGGATGGGTTGCATGG 60.380 57.895 0.00 0.00 0.00 3.66
100 101 1.857638 TTCGGGATGGGTTGCATGGA 61.858 55.000 0.00 0.00 0.00 3.41
101 102 1.152694 CGGGATGGGTTGCATGGAT 60.153 57.895 0.00 0.00 0.00 3.41
102 103 0.756442 CGGGATGGGTTGCATGGATT 60.756 55.000 0.00 0.00 0.00 3.01
103 104 1.499368 GGGATGGGTTGCATGGATTT 58.501 50.000 0.00 0.00 0.00 2.17
104 105 2.676748 GGGATGGGTTGCATGGATTTA 58.323 47.619 0.00 0.00 0.00 1.40
105 106 3.037549 GGGATGGGTTGCATGGATTTAA 58.962 45.455 0.00 0.00 0.00 1.52
106 107 3.070015 GGGATGGGTTGCATGGATTTAAG 59.930 47.826 0.00 0.00 0.00 1.85
107 108 3.070015 GGATGGGTTGCATGGATTTAAGG 59.930 47.826 0.00 0.00 0.00 2.69
108 109 3.464720 TGGGTTGCATGGATTTAAGGA 57.535 42.857 0.00 0.00 0.00 3.36
109 110 3.992999 TGGGTTGCATGGATTTAAGGAT 58.007 40.909 0.00 0.00 0.00 3.24
110 111 3.960102 TGGGTTGCATGGATTTAAGGATC 59.040 43.478 0.00 0.00 0.00 3.36
111 112 3.960102 GGGTTGCATGGATTTAAGGATCA 59.040 43.478 0.00 0.00 0.00 2.92
112 113 4.405358 GGGTTGCATGGATTTAAGGATCAA 59.595 41.667 0.00 0.00 0.00 2.57
113 114 5.104982 GGGTTGCATGGATTTAAGGATCAAA 60.105 40.000 0.00 0.00 0.00 2.69
114 115 6.405538 GGTTGCATGGATTTAAGGATCAAAA 58.594 36.000 0.00 0.00 0.00 2.44
115 116 7.049754 GGTTGCATGGATTTAAGGATCAAAAT 58.950 34.615 0.00 0.00 0.00 1.82
116 117 7.553760 GGTTGCATGGATTTAAGGATCAAAATT 59.446 33.333 0.00 0.00 0.00 1.82
117 118 8.949177 GTTGCATGGATTTAAGGATCAAAATTT 58.051 29.630 0.00 0.00 0.00 1.82
118 119 8.495361 TGCATGGATTTAAGGATCAAAATTTG 57.505 30.769 0.00 0.00 0.00 2.32
119 120 8.319881 TGCATGGATTTAAGGATCAAAATTTGA 58.680 29.630 11.10 11.10 45.01 2.69
120 121 8.823818 GCATGGATTTAAGGATCAAAATTTGAG 58.176 33.333 14.10 0.00 43.98 3.02
154 155 9.319143 GATGTATAACACAATATATGAGGAGCC 57.681 37.037 0.00 0.00 41.55 4.70
155 156 7.320399 TGTATAACACAATATATGAGGAGCCG 58.680 38.462 0.00 0.00 32.95 5.52
156 157 3.685139 ACACAATATATGAGGAGCCGG 57.315 47.619 0.00 0.00 0.00 6.13
157 158 2.972713 ACACAATATATGAGGAGCCGGT 59.027 45.455 1.90 0.00 0.00 5.28
158 159 3.244215 ACACAATATATGAGGAGCCGGTG 60.244 47.826 1.90 0.00 0.00 4.94
159 160 2.303022 ACAATATATGAGGAGCCGGTGG 59.697 50.000 1.90 0.00 0.00 4.61
160 161 1.573108 ATATATGAGGAGCCGGTGGG 58.427 55.000 1.90 0.00 0.00 4.61
161 162 0.190069 TATATGAGGAGCCGGTGGGT 59.810 55.000 1.90 0.00 35.46 4.51
162 163 1.410850 ATATGAGGAGCCGGTGGGTG 61.411 60.000 1.90 0.00 31.55 4.61
173 174 4.314440 GTGGGTGCTGTCTGCGGA 62.314 66.667 0.00 0.00 46.63 5.54
174 175 4.314440 TGGGTGCTGTCTGCGGAC 62.314 66.667 19.20 19.20 46.63 4.79
176 177 4.664677 GGTGCTGTCTGCGGACGT 62.665 66.667 20.49 0.00 46.63 4.34
177 178 3.406361 GTGCTGTCTGCGGACGTG 61.406 66.667 20.49 16.07 46.63 4.49
180 181 2.807045 CTGTCTGCGGACGTGCTC 60.807 66.667 20.49 0.00 44.83 4.26
181 182 4.700365 TGTCTGCGGACGTGCTCG 62.700 66.667 20.49 6.63 44.83 5.03
203 204 4.695231 CGTCCGCGGGCGTATAGG 62.695 72.222 41.78 15.36 37.81 2.57
204 205 4.353437 GTCCGCGGGCGTATAGGG 62.353 72.222 27.83 0.00 37.81 3.53
205 206 4.900704 TCCGCGGGCGTATAGGGT 62.901 66.667 27.83 0.00 37.81 4.34
206 207 4.657824 CCGCGGGCGTATAGGGTG 62.658 72.222 20.10 0.00 37.81 4.61
211 212 3.228759 GGCGTATAGGGTGCCGGA 61.229 66.667 5.05 0.00 39.30 5.14
212 213 2.580601 GGCGTATAGGGTGCCGGAT 61.581 63.158 5.05 0.00 39.30 4.18
213 214 1.370064 GCGTATAGGGTGCCGGATT 59.630 57.895 5.05 0.00 0.00 3.01
214 215 0.250166 GCGTATAGGGTGCCGGATTT 60.250 55.000 5.05 0.00 0.00 2.17
215 216 1.508632 CGTATAGGGTGCCGGATTTG 58.491 55.000 5.05 0.00 0.00 2.32
216 217 1.202604 CGTATAGGGTGCCGGATTTGT 60.203 52.381 5.05 0.00 0.00 2.83
217 218 2.490991 GTATAGGGTGCCGGATTTGTC 58.509 52.381 5.05 0.00 0.00 3.18
218 219 0.179056 ATAGGGTGCCGGATTTGTCG 60.179 55.000 5.05 0.00 0.00 4.35
228 229 2.746277 ATTTGTCGGTCCGGCTGC 60.746 61.111 18.28 3.46 30.55 5.25
239 240 2.470362 CCGGCTGCAGATGCTCTTG 61.470 63.158 20.43 0.00 42.66 3.02
244 245 1.532007 GCTGCAGATGCTCTTGCTATC 59.468 52.381 20.43 0.00 42.66 2.08
293 294 1.021390 ATGGCTCCGTGAAAAGCTCG 61.021 55.000 0.00 0.00 38.58 5.03
381 382 3.078837 TCGTAAATCAGCTTTTCACCCC 58.921 45.455 0.00 0.00 0.00 4.95
403 404 1.093159 CAGGCCAGCTCATCTCAAAC 58.907 55.000 5.01 0.00 0.00 2.93
439 446 4.479158 AGTATTTTCTTTGCCAGGACCAA 58.521 39.130 0.00 0.00 0.00 3.67
443 450 2.380064 TCTTTGCCAGGACCAACATT 57.620 45.000 0.00 0.00 0.00 2.71
444 451 1.962807 TCTTTGCCAGGACCAACATTG 59.037 47.619 0.00 0.00 0.00 2.82
445 452 1.962807 CTTTGCCAGGACCAACATTGA 59.037 47.619 0.00 0.00 0.00 2.57
446 453 2.307496 TTGCCAGGACCAACATTGAT 57.693 45.000 0.00 0.00 0.00 2.57
447 454 1.548081 TGCCAGGACCAACATTGATG 58.452 50.000 0.00 0.00 0.00 3.07
448 455 1.075212 TGCCAGGACCAACATTGATGA 59.925 47.619 0.00 0.00 0.00 2.92
449 456 2.170166 GCCAGGACCAACATTGATGAA 58.830 47.619 0.00 0.00 0.00 2.57
471 478 1.319541 ATGATTGCAGAGCATCAGGC 58.680 50.000 5.16 0.00 38.76 4.85
482 489 0.813821 GCATCAGGCTCTCCAAAACC 59.186 55.000 0.00 0.00 40.25 3.27
483 490 1.467920 CATCAGGCTCTCCAAAACCC 58.532 55.000 0.00 0.00 33.74 4.11
484 491 1.075601 ATCAGGCTCTCCAAAACCCA 58.924 50.000 0.00 0.00 33.74 4.51
485 492 0.850100 TCAGGCTCTCCAAAACCCAA 59.150 50.000 0.00 0.00 33.74 4.12
486 493 1.216678 TCAGGCTCTCCAAAACCCAAA 59.783 47.619 0.00 0.00 33.74 3.28
487 494 1.341209 CAGGCTCTCCAAAACCCAAAC 59.659 52.381 0.00 0.00 33.74 2.93
488 495 0.679505 GGCTCTCCAAAACCCAAACC 59.320 55.000 0.00 0.00 0.00 3.27
492 499 2.365293 CTCTCCAAAACCCAAACCCTTG 59.635 50.000 0.00 0.00 0.00 3.61
503 510 2.411765 AAACCCTTGGTGCTAGCGCT 62.412 55.000 26.36 17.26 35.34 5.92
542 551 2.736531 CCAGCACAAAACAGGGCC 59.263 61.111 0.00 0.00 0.00 5.80
582 592 3.315142 CTAGGCCGACCAGCTGCAA 62.315 63.158 8.66 0.00 39.06 4.08
600 611 2.305635 GCAACCCCCAAAATTCCATTCT 59.694 45.455 0.00 0.00 0.00 2.40
657 674 1.547909 TAAACGCGCCATGTACGTAG 58.452 50.000 5.73 4.11 39.49 3.51
659 676 1.074319 AACGCGCCATGTACGTAGTG 61.074 55.000 5.73 0.00 45.73 2.74
660 677 2.856346 CGCGCCATGTACGTAGTGC 61.856 63.158 8.75 8.75 45.73 4.40
708 725 0.026285 GCACTTATTACAGGTGCGCG 59.974 55.000 0.00 0.00 44.91 6.86
711 728 1.772063 CTTATTACAGGTGCGCGCCC 61.772 60.000 35.27 27.61 0.00 6.13
727 748 4.124943 CCAGCCCAGCCAGAGCAT 62.125 66.667 0.00 0.00 43.56 3.79
732 753 3.138798 CCAGCCAGAGCATGCACC 61.139 66.667 21.98 11.30 43.56 5.01
844 878 1.667830 GCAAGGCACACGTAGCAGA 60.668 57.895 13.31 0.00 0.00 4.26
845 879 1.630244 GCAAGGCACACGTAGCAGAG 61.630 60.000 13.31 4.20 0.00 3.35
904 938 0.179124 GATCGAAGGTCGCTTCTGCT 60.179 55.000 0.00 0.00 40.21 4.24
964 998 4.081030 CGCGCAGTGCTTGACAGG 62.081 66.667 14.33 0.00 43.27 4.00
978 1012 3.160047 CAGGGGCCGATCAGAGCT 61.160 66.667 0.00 0.00 0.00 4.09
979 1013 2.366167 AGGGGCCGATCAGAGCTT 60.366 61.111 0.00 0.00 0.00 3.74
1053 1087 3.068881 CCGGGCAAGAAGGACAGA 58.931 61.111 0.00 0.00 0.00 3.41
1451 1485 2.202623 CTACCTGGTGAGTCGCGC 60.203 66.667 10.23 0.00 0.00 6.86
1487 1521 3.564027 CCGGTTCTTGATCCGCGC 61.564 66.667 13.00 0.00 44.63 6.86
1491 1525 1.632046 GGTTCTTGATCCGCGCGAAA 61.632 55.000 34.63 19.93 0.00 3.46
1495 1529 1.351430 CTTGATCCGCGCGAAAGTCA 61.351 55.000 34.63 24.19 0.00 3.41
1537 1572 6.035368 TCTATTTATCTGATGAGAGGCTGC 57.965 41.667 0.00 0.00 0.00 5.25
1818 1854 2.753966 GCATCAGGTGCGTGCGAAT 61.754 57.895 0.00 0.00 45.23 3.34
1819 1855 1.061411 CATCAGGTGCGTGCGAATG 59.939 57.895 0.00 0.00 0.00 2.67
1853 1889 9.920946 TCTCTTAAACTTTGGCTGGATAATAAT 57.079 29.630 0.00 0.00 0.00 1.28
1891 1927 3.771577 ACCATCGAAAAGTCTGGAACT 57.228 42.857 7.46 0.00 41.10 3.01
1902 1938 7.111593 CGAAAAGTCTGGAACTAAATTTCGTTG 59.888 37.037 12.36 0.00 43.81 4.10
2260 2308 1.819632 GTTCCCCAGCTACATGGCG 60.820 63.158 0.00 0.00 39.17 5.69
2681 2735 0.390472 GCCGCAGAAGAAGTGCTAGT 60.390 55.000 0.00 0.00 38.88 2.57
2683 2737 1.067565 CCGCAGAAGAAGTGCTAGTGA 60.068 52.381 0.00 0.00 38.88 3.41
2684 2738 2.257894 CGCAGAAGAAGTGCTAGTGAG 58.742 52.381 0.00 0.00 38.88 3.51
2685 2739 2.352225 CGCAGAAGAAGTGCTAGTGAGT 60.352 50.000 0.00 0.00 38.88 3.41
2686 2740 2.992543 GCAGAAGAAGTGCTAGTGAGTG 59.007 50.000 0.00 0.00 37.96 3.51
2687 2741 3.305676 GCAGAAGAAGTGCTAGTGAGTGA 60.306 47.826 0.00 0.00 37.96 3.41
2690 2744 4.769488 AGAAGAAGTGCTAGTGAGTGATCA 59.231 41.667 0.00 0.00 0.00 2.92
2694 2748 5.356751 AGAAGTGCTAGTGAGTGATCAGTAG 59.643 44.000 2.17 13.42 43.16 2.57
2698 2752 4.566545 CTAGTGAGTGATCAGTAGCCTG 57.433 50.000 2.17 0.00 36.99 4.85
2701 2755 4.541705 AGTGAGTGATCAGTAGCCTGTAT 58.458 43.478 2.17 0.00 39.82 2.29
2770 2838 4.020751 ACAGTAGAAGAAGCTGAGCATGAA 60.021 41.667 7.39 0.00 34.60 2.57
2773 2841 1.401199 GAAGAAGCTGAGCATGAAGGC 59.599 52.381 7.39 0.00 0.00 4.35
2775 2843 1.004511 AGAAGCTGAGCATGAAGGCTT 59.995 47.619 7.39 0.00 45.99 4.35
2776 2844 1.401199 GAAGCTGAGCATGAAGGCTTC 59.599 52.381 20.27 20.27 45.99 3.86
2777 2845 0.327259 AGCTGAGCATGAAGGCTTCA 59.673 50.000 30.29 30.29 45.99 3.02
2778 2846 0.733729 GCTGAGCATGAAGGCTTCAG 59.266 55.000 31.17 23.38 45.99 3.02
2779 2847 1.678123 GCTGAGCATGAAGGCTTCAGA 60.678 52.381 31.17 12.56 45.99 3.27
2780 2848 2.008329 CTGAGCATGAAGGCTTCAGAC 58.992 52.381 31.17 24.83 45.99 3.51
2832 2900 2.901839 AGCAAGGCCTGATGACATTTTT 59.098 40.909 5.69 0.00 0.00 1.94
2842 2910 5.276963 CCTGATGACATTTTTGTGTTTGTGC 60.277 40.000 0.00 0.00 31.16 4.57
2843 2911 5.417811 TGATGACATTTTTGTGTTTGTGCT 58.582 33.333 0.00 0.00 31.16 4.40
2844 2912 5.291371 TGATGACATTTTTGTGTTTGTGCTG 59.709 36.000 0.00 0.00 31.16 4.41
2885 2953 6.414987 GCATAAGAGTGTTGTGTTTTTGACTC 59.585 38.462 0.00 0.00 0.00 3.36
2886 2954 7.679638 GCATAAGAGTGTTGTGTTTTTGACTCT 60.680 37.037 0.00 0.00 41.46 3.24
2887 2955 6.575162 AAGAGTGTTGTGTTTTTGACTCTT 57.425 33.333 0.00 0.00 42.94 2.85
2888 2956 6.575162 AGAGTGTTGTGTTTTTGACTCTTT 57.425 33.333 0.00 0.00 37.48 2.52
2889 2957 6.981722 AGAGTGTTGTGTTTTTGACTCTTTT 58.018 32.000 0.00 0.00 37.48 2.27
2890 2958 7.433680 AGAGTGTTGTGTTTTTGACTCTTTTT 58.566 30.769 0.00 0.00 37.48 1.94
2954 3022 6.638096 TTGATCTTTCAAATCTGTGAGCAA 57.362 33.333 0.00 0.00 38.90 3.91
2972 3040 5.048294 TGAGCAATCAAGTTCTAGTCGTACA 60.048 40.000 0.00 0.00 0.00 2.90
2980 3048 4.987832 AGTTCTAGTCGTACATTGCAGAG 58.012 43.478 0.00 0.00 0.00 3.35
2996 3064 5.236655 TGCAGAGTGAGATTAAGAGTACG 57.763 43.478 0.00 0.00 0.00 3.67
3024 3092 0.249911 AGTTCCAGTGTCTCGTTGCC 60.250 55.000 0.00 0.00 0.00 4.52
3039 3107 4.189188 GCCGCTGGCTGCTGAATG 62.189 66.667 14.58 0.00 46.69 2.67
3040 3108 2.749044 CCGCTGGCTGCTGAATGT 60.749 61.111 14.58 0.00 40.11 2.71
3041 3109 1.450134 CCGCTGGCTGCTGAATGTA 60.450 57.895 14.58 0.00 40.11 2.29
3042 3110 1.709147 CCGCTGGCTGCTGAATGTAC 61.709 60.000 14.58 0.00 40.11 2.90
3043 3111 0.742281 CGCTGGCTGCTGAATGTACT 60.742 55.000 14.58 0.00 40.11 2.73
3044 3112 1.471501 CGCTGGCTGCTGAATGTACTA 60.472 52.381 14.58 0.00 40.11 1.82
3045 3113 1.936547 GCTGGCTGCTGAATGTACTAC 59.063 52.381 9.31 0.00 38.95 2.73
3046 3114 2.196749 CTGGCTGCTGAATGTACTACG 58.803 52.381 0.00 0.00 0.00 3.51
3047 3115 1.548719 TGGCTGCTGAATGTACTACGT 59.451 47.619 0.00 0.00 0.00 3.57
3048 3116 2.756207 TGGCTGCTGAATGTACTACGTA 59.244 45.455 0.00 0.00 0.00 3.57
3049 3117 3.383505 TGGCTGCTGAATGTACTACGTAT 59.616 43.478 0.00 0.00 0.00 3.06
3050 3118 3.982058 GGCTGCTGAATGTACTACGTATC 59.018 47.826 0.00 0.00 0.00 2.24
3051 3119 3.982058 GCTGCTGAATGTACTACGTATCC 59.018 47.826 0.00 0.00 0.00 2.59
3052 3120 4.547532 CTGCTGAATGTACTACGTATCCC 58.452 47.826 0.00 0.00 0.00 3.85
3053 3121 4.212716 TGCTGAATGTACTACGTATCCCT 58.787 43.478 0.00 0.00 0.00 4.20
3054 3122 4.277672 TGCTGAATGTACTACGTATCCCTC 59.722 45.833 0.00 0.00 0.00 4.30
3055 3123 4.613167 GCTGAATGTACTACGTATCCCTCG 60.613 50.000 0.00 0.00 0.00 4.63
3056 3124 3.817084 TGAATGTACTACGTATCCCTCGG 59.183 47.826 0.00 0.00 0.00 4.63
3057 3125 2.260844 TGTACTACGTATCCCTCGGG 57.739 55.000 0.00 0.00 0.00 5.14
3058 3126 1.490490 TGTACTACGTATCCCTCGGGT 59.510 52.381 1.18 0.00 36.47 5.28
3059 3127 2.092429 TGTACTACGTATCCCTCGGGTT 60.092 50.000 1.18 0.00 36.47 4.11
3060 3128 1.685148 ACTACGTATCCCTCGGGTTC 58.315 55.000 1.18 0.00 36.47 3.62
3061 3129 1.064463 ACTACGTATCCCTCGGGTTCA 60.064 52.381 1.18 0.00 36.47 3.18
3062 3130 1.607628 CTACGTATCCCTCGGGTTCAG 59.392 57.143 1.18 0.00 36.47 3.02
3063 3131 0.324091 ACGTATCCCTCGGGTTCAGT 60.324 55.000 1.18 0.00 36.47 3.41
3064 3132 0.822164 CGTATCCCTCGGGTTCAGTT 59.178 55.000 1.18 0.00 36.47 3.16
3065 3133 1.206371 CGTATCCCTCGGGTTCAGTTT 59.794 52.381 1.18 0.00 36.47 2.66
3066 3134 2.737679 CGTATCCCTCGGGTTCAGTTTC 60.738 54.545 1.18 0.00 36.47 2.78
3067 3135 1.657804 ATCCCTCGGGTTCAGTTTCT 58.342 50.000 1.18 0.00 36.47 2.52
3068 3136 0.685097 TCCCTCGGGTTCAGTTTCTG 59.315 55.000 1.18 0.00 36.47 3.02
3069 3137 0.396811 CCCTCGGGTTCAGTTTCTGT 59.603 55.000 0.00 0.00 32.61 3.41
3070 3138 1.202770 CCCTCGGGTTCAGTTTCTGTT 60.203 52.381 0.00 0.00 32.61 3.16
3071 3139 2.572290 CCTCGGGTTCAGTTTCTGTTT 58.428 47.619 0.00 0.00 32.61 2.83
3072 3140 2.548480 CCTCGGGTTCAGTTTCTGTTTC 59.452 50.000 0.00 0.00 32.61 2.78
3073 3141 3.467803 CTCGGGTTCAGTTTCTGTTTCT 58.532 45.455 0.00 0.00 32.61 2.52
3074 3142 3.877508 CTCGGGTTCAGTTTCTGTTTCTT 59.122 43.478 0.00 0.00 32.61 2.52
3075 3143 3.875134 TCGGGTTCAGTTTCTGTTTCTTC 59.125 43.478 0.00 0.00 32.61 2.87
3076 3144 3.303132 CGGGTTCAGTTTCTGTTTCTTCG 60.303 47.826 0.00 0.00 32.61 3.79
3077 3145 3.875134 GGGTTCAGTTTCTGTTTCTTCGA 59.125 43.478 0.00 0.00 32.61 3.71
3078 3146 4.334481 GGGTTCAGTTTCTGTTTCTTCGAA 59.666 41.667 0.00 0.00 32.61 3.71
3079 3147 5.163693 GGGTTCAGTTTCTGTTTCTTCGAAA 60.164 40.000 0.00 0.00 32.61 3.46
3080 3148 6.459710 GGGTTCAGTTTCTGTTTCTTCGAAAT 60.460 38.462 0.00 0.00 32.61 2.17
3081 3149 7.255001 GGGTTCAGTTTCTGTTTCTTCGAAATA 60.255 37.037 0.00 0.00 32.61 1.40
3082 3150 7.586664 GGTTCAGTTTCTGTTTCTTCGAAATAC 59.413 37.037 0.00 0.00 32.61 1.89
3083 3151 7.780008 TCAGTTTCTGTTTCTTCGAAATACA 57.220 32.000 0.00 3.08 32.61 2.29
3084 3152 7.851508 TCAGTTTCTGTTTCTTCGAAATACAG 58.148 34.615 19.87 19.87 38.00 2.74
3085 3153 7.494625 TCAGTTTCTGTTTCTTCGAAATACAGT 59.505 33.333 22.68 9.65 37.90 3.55
3086 3154 8.761497 CAGTTTCTGTTTCTTCGAAATACAGTA 58.239 33.333 22.68 15.88 37.90 2.74
3087 3155 8.979574 AGTTTCTGTTTCTTCGAAATACAGTAG 58.020 33.333 22.68 8.58 37.90 2.57
3088 3156 8.762426 GTTTCTGTTTCTTCGAAATACAGTAGT 58.238 33.333 22.68 0.00 37.90 2.73
3089 3157 9.970395 TTTCTGTTTCTTCGAAATACAGTAGTA 57.030 29.630 22.68 9.65 37.90 1.82
3091 3159 9.784680 TCTGTTTCTTCGAAATACAGTAGTATC 57.215 33.333 22.68 0.00 40.00 2.24
3092 3160 9.790389 CTGTTTCTTCGAAATACAGTAGTATCT 57.210 33.333 18.58 0.00 40.00 1.98
3095 3163 8.630278 TTCTTCGAAATACAGTAGTATCTTGC 57.370 34.615 0.00 0.00 40.00 4.01
3096 3164 7.997482 TCTTCGAAATACAGTAGTATCTTGCT 58.003 34.615 0.00 0.00 40.00 3.91
3097 3165 8.129840 TCTTCGAAATACAGTAGTATCTTGCTC 58.870 37.037 0.00 0.00 40.00 4.26
3098 3166 7.329588 TCGAAATACAGTAGTATCTTGCTCA 57.670 36.000 0.00 0.00 40.00 4.26
3099 3167 7.768240 TCGAAATACAGTAGTATCTTGCTCAA 58.232 34.615 0.00 0.00 40.00 3.02
3100 3168 8.414003 TCGAAATACAGTAGTATCTTGCTCAAT 58.586 33.333 0.00 0.00 40.00 2.57
3101 3169 8.483218 CGAAATACAGTAGTATCTTGCTCAATG 58.517 37.037 0.00 0.00 40.00 2.82
3102 3170 9.319143 GAAATACAGTAGTATCTTGCTCAATGT 57.681 33.333 0.00 0.00 40.00 2.71
3103 3171 9.672673 AAATACAGTAGTATCTTGCTCAATGTT 57.327 29.630 0.00 0.00 40.00 2.71
3104 3172 9.672673 AATACAGTAGTATCTTGCTCAATGTTT 57.327 29.630 0.00 0.00 40.00 2.83
3105 3173 7.369803 ACAGTAGTATCTTGCTCAATGTTTG 57.630 36.000 0.00 0.00 0.00 2.93
3106 3174 6.372659 ACAGTAGTATCTTGCTCAATGTTTGG 59.627 38.462 0.00 0.00 0.00 3.28
3107 3175 5.882557 AGTAGTATCTTGCTCAATGTTTGGG 59.117 40.000 0.00 0.00 0.00 4.12
3108 3176 4.922206 AGTATCTTGCTCAATGTTTGGGA 58.078 39.130 0.00 0.00 30.85 4.37
3109 3177 5.513233 AGTATCTTGCTCAATGTTTGGGAT 58.487 37.500 0.00 0.00 30.85 3.85
3110 3178 4.730949 ATCTTGCTCAATGTTTGGGATG 57.269 40.909 0.00 0.00 30.85 3.51
3111 3179 2.231964 TCTTGCTCAATGTTTGGGATGC 59.768 45.455 0.00 0.00 30.85 3.91
3112 3180 1.927487 TGCTCAATGTTTGGGATGCT 58.073 45.000 0.00 0.00 30.85 3.79
3113 3181 2.250031 TGCTCAATGTTTGGGATGCTT 58.750 42.857 0.00 0.00 30.85 3.91
3114 3182 2.633967 TGCTCAATGTTTGGGATGCTTT 59.366 40.909 0.00 0.00 30.85 3.51
3115 3183 3.256558 GCTCAATGTTTGGGATGCTTTC 58.743 45.455 0.00 0.00 30.85 2.62
3116 3184 3.056322 GCTCAATGTTTGGGATGCTTTCT 60.056 43.478 0.00 0.00 30.85 2.52
3117 3185 4.158394 GCTCAATGTTTGGGATGCTTTCTA 59.842 41.667 0.00 0.00 30.85 2.10
3118 3186 5.643379 TCAATGTTTGGGATGCTTTCTAC 57.357 39.130 0.00 0.00 0.00 2.59
3119 3187 5.324409 TCAATGTTTGGGATGCTTTCTACT 58.676 37.500 0.00 0.00 0.00 2.57
3120 3188 5.774690 TCAATGTTTGGGATGCTTTCTACTT 59.225 36.000 0.00 0.00 0.00 2.24
3121 3189 5.904362 ATGTTTGGGATGCTTTCTACTTC 57.096 39.130 0.00 0.00 0.00 3.01
3122 3190 4.985538 TGTTTGGGATGCTTTCTACTTCT 58.014 39.130 0.00 0.00 0.00 2.85
3123 3191 6.121776 TGTTTGGGATGCTTTCTACTTCTA 57.878 37.500 0.00 0.00 0.00 2.10
3124 3192 6.539173 TGTTTGGGATGCTTTCTACTTCTAA 58.461 36.000 0.00 0.00 0.00 2.10
3125 3193 7.001674 TGTTTGGGATGCTTTCTACTTCTAAA 58.998 34.615 0.00 0.00 0.00 1.85
3126 3194 7.669722 TGTTTGGGATGCTTTCTACTTCTAAAT 59.330 33.333 0.00 0.00 0.00 1.40
3127 3195 8.523658 GTTTGGGATGCTTTCTACTTCTAAATT 58.476 33.333 0.00 0.00 0.00 1.82
3128 3196 7.865706 TGGGATGCTTTCTACTTCTAAATTC 57.134 36.000 0.00 0.00 0.00 2.17
3129 3197 7.633789 TGGGATGCTTTCTACTTCTAAATTCT 58.366 34.615 0.00 0.00 0.00 2.40
3130 3198 8.768397 TGGGATGCTTTCTACTTCTAAATTCTA 58.232 33.333 0.00 0.00 0.00 2.10
3131 3199 9.614792 GGGATGCTTTCTACTTCTAAATTCTAA 57.385 33.333 0.00 0.00 0.00 2.10
3135 3203 9.314321 TGCTTTCTACTTCTAAATTCTAATCGG 57.686 33.333 0.00 0.00 0.00 4.18
3136 3204 9.315525 GCTTTCTACTTCTAAATTCTAATCGGT 57.684 33.333 0.00 0.00 0.00 4.69
3142 3210 8.853469 ACTTCTAAATTCTAATCGGTTCTACG 57.147 34.615 0.00 0.00 0.00 3.51
3143 3211 7.919621 ACTTCTAAATTCTAATCGGTTCTACGG 59.080 37.037 0.00 0.00 0.00 4.02
3144 3212 7.338800 TCTAAATTCTAATCGGTTCTACGGT 57.661 36.000 0.00 0.00 0.00 4.83
3145 3213 8.450578 TCTAAATTCTAATCGGTTCTACGGTA 57.549 34.615 0.00 0.00 0.00 4.02
3146 3214 8.562892 TCTAAATTCTAATCGGTTCTACGGTAG 58.437 37.037 8.91 8.91 0.00 3.18
3147 3215 6.949352 AATTCTAATCGGTTCTACGGTAGA 57.051 37.500 13.70 13.70 32.77 2.59
3148 3216 5.998454 TTCTAATCGGTTCTACGGTAGAG 57.002 43.478 16.70 7.18 35.96 2.43
3149 3217 5.282055 TCTAATCGGTTCTACGGTAGAGA 57.718 43.478 16.70 11.89 35.96 3.10
3150 3218 5.862845 TCTAATCGGTTCTACGGTAGAGAT 58.137 41.667 16.70 13.43 35.96 2.75
3151 3219 4.832590 AATCGGTTCTACGGTAGAGATG 57.167 45.455 16.70 10.91 35.96 2.90
3152 3220 3.548745 TCGGTTCTACGGTAGAGATGA 57.451 47.619 16.70 12.74 35.96 2.92
3153 3221 4.082665 TCGGTTCTACGGTAGAGATGAT 57.917 45.455 16.70 0.00 35.96 2.45
3154 3222 5.219343 TCGGTTCTACGGTAGAGATGATA 57.781 43.478 16.70 0.00 35.96 2.15
3155 3223 4.993584 TCGGTTCTACGGTAGAGATGATAC 59.006 45.833 16.70 11.32 35.96 2.24
3156 3224 4.753610 CGGTTCTACGGTAGAGATGATACA 59.246 45.833 16.70 0.00 35.96 2.29
3157 3225 5.237996 CGGTTCTACGGTAGAGATGATACAA 59.762 44.000 16.70 0.00 35.96 2.41
3158 3226 6.072618 CGGTTCTACGGTAGAGATGATACAAT 60.073 42.308 16.70 0.00 35.96 2.71
3159 3227 7.521748 CGGTTCTACGGTAGAGATGATACAATT 60.522 40.741 16.70 0.00 35.96 2.32
3160 3228 7.595502 GGTTCTACGGTAGAGATGATACAATTG 59.404 40.741 16.70 3.24 35.96 2.32
3161 3229 8.350722 GTTCTACGGTAGAGATGATACAATTGA 58.649 37.037 16.70 0.00 35.96 2.57
3162 3230 8.637196 TCTACGGTAGAGATGATACAATTGAT 57.363 34.615 13.59 1.08 0.00 2.57
3163 3231 9.734984 TCTACGGTAGAGATGATACAATTGATA 57.265 33.333 13.59 1.30 0.00 2.15
3166 3234 8.861086 ACGGTAGAGATGATACAATTGATAACT 58.139 33.333 13.59 3.64 0.00 2.24
3167 3235 9.698309 CGGTAGAGATGATACAATTGATAACTT 57.302 33.333 13.59 0.00 0.00 2.66
3174 3242 9.941664 GATGATACAATTGATAACTTGTTCAGG 57.058 33.333 13.59 0.00 36.92 3.86
3175 3243 8.279970 TGATACAATTGATAACTTGTTCAGGG 57.720 34.615 13.59 0.00 36.92 4.45
3176 3244 8.106462 TGATACAATTGATAACTTGTTCAGGGA 58.894 33.333 13.59 0.00 36.92 4.20
3177 3245 6.824305 ACAATTGATAACTTGTTCAGGGAG 57.176 37.500 13.59 0.00 31.74 4.30
3178 3246 5.711976 ACAATTGATAACTTGTTCAGGGAGG 59.288 40.000 13.59 0.00 31.74 4.30
3179 3247 4.993705 TTGATAACTTGTTCAGGGAGGT 57.006 40.909 0.00 0.00 0.00 3.85
3180 3248 4.553330 TGATAACTTGTTCAGGGAGGTC 57.447 45.455 0.00 0.00 0.00 3.85
3181 3249 3.907474 TGATAACTTGTTCAGGGAGGTCA 59.093 43.478 0.00 0.00 0.00 4.02
3182 3250 4.536090 TGATAACTTGTTCAGGGAGGTCAT 59.464 41.667 0.00 0.00 0.00 3.06
3183 3251 3.884037 AACTTGTTCAGGGAGGTCATT 57.116 42.857 0.00 0.00 0.00 2.57
3184 3252 3.146104 ACTTGTTCAGGGAGGTCATTG 57.854 47.619 0.00 0.00 0.00 2.82
3185 3253 2.711009 ACTTGTTCAGGGAGGTCATTGA 59.289 45.455 0.00 0.00 0.00 2.57
3186 3254 3.138283 ACTTGTTCAGGGAGGTCATTGAA 59.862 43.478 0.00 0.00 0.00 2.69
3187 3255 3.423539 TGTTCAGGGAGGTCATTGAAG 57.576 47.619 0.00 0.00 30.86 3.02
3188 3256 2.087646 GTTCAGGGAGGTCATTGAAGC 58.912 52.381 0.00 0.00 30.86 3.86
3189 3257 0.250234 TCAGGGAGGTCATTGAAGCG 59.750 55.000 0.00 0.00 0.00 4.68
3190 3258 0.745845 CAGGGAGGTCATTGAAGCGG 60.746 60.000 0.00 0.00 0.00 5.52
3191 3259 1.201429 AGGGAGGTCATTGAAGCGGT 61.201 55.000 0.00 0.00 0.00 5.68
3192 3260 0.539986 GGGAGGTCATTGAAGCGGTA 59.460 55.000 0.00 0.00 0.00 4.02
3193 3261 1.065709 GGGAGGTCATTGAAGCGGTAA 60.066 52.381 0.00 0.00 0.00 2.85
3194 3262 2.007608 GGAGGTCATTGAAGCGGTAAC 58.992 52.381 0.00 0.00 0.00 2.50
3195 3263 2.614481 GGAGGTCATTGAAGCGGTAACA 60.614 50.000 0.00 0.00 0.00 2.41
3196 3264 3.270877 GAGGTCATTGAAGCGGTAACAT 58.729 45.455 0.00 0.00 0.00 2.71
3197 3265 3.270877 AGGTCATTGAAGCGGTAACATC 58.729 45.455 0.00 0.00 0.00 3.06
3198 3266 3.006940 GGTCATTGAAGCGGTAACATCA 58.993 45.455 0.00 0.00 0.00 3.07
3199 3267 3.181510 GGTCATTGAAGCGGTAACATCAC 60.182 47.826 0.00 0.00 0.00 3.06
3200 3268 3.684788 GTCATTGAAGCGGTAACATCACT 59.315 43.478 0.00 0.00 0.00 3.41
3201 3269 4.154195 GTCATTGAAGCGGTAACATCACTT 59.846 41.667 0.00 0.00 0.00 3.16
3202 3270 4.391830 TCATTGAAGCGGTAACATCACTTC 59.608 41.667 0.00 0.00 37.77 3.01
3203 3271 3.394674 TGAAGCGGTAACATCACTTCA 57.605 42.857 0.00 0.00 43.18 3.02
3204 3272 3.325870 TGAAGCGGTAACATCACTTCAG 58.674 45.455 0.00 0.00 41.20 3.02
3205 3273 1.726853 AGCGGTAACATCACTTCAGC 58.273 50.000 0.00 0.00 0.00 4.26
3206 3274 0.727398 GCGGTAACATCACTTCAGCC 59.273 55.000 0.00 0.00 0.00 4.85
3207 3275 1.369625 CGGTAACATCACTTCAGCCC 58.630 55.000 0.00 0.00 0.00 5.19
3208 3276 1.751437 GGTAACATCACTTCAGCCCC 58.249 55.000 0.00 0.00 0.00 5.80
3209 3277 1.682087 GGTAACATCACTTCAGCCCCC 60.682 57.143 0.00 0.00 0.00 5.40
3210 3278 0.251916 TAACATCACTTCAGCCCCCG 59.748 55.000 0.00 0.00 0.00 5.73
3211 3279 2.825836 CATCACTTCAGCCCCCGC 60.826 66.667 0.00 0.00 0.00 6.13
3212 3280 4.473520 ATCACTTCAGCCCCCGCG 62.474 66.667 0.00 0.00 41.18 6.46
3275 3343 4.106925 GCAGCCTCCCCTCACCAG 62.107 72.222 0.00 0.00 0.00 4.00
3276 3344 4.106925 CAGCCTCCCCTCACCAGC 62.107 72.222 0.00 0.00 0.00 4.85
3280 3348 4.748798 CTCCCCTCACCAGCCCCT 62.749 72.222 0.00 0.00 0.00 4.79
3281 3349 4.741239 TCCCCTCACCAGCCCCTC 62.741 72.222 0.00 0.00 0.00 4.30
3282 3350 4.748798 CCCCTCACCAGCCCCTCT 62.749 72.222 0.00 0.00 0.00 3.69
3283 3351 3.086600 CCCTCACCAGCCCCTCTC 61.087 72.222 0.00 0.00 0.00 3.20
3284 3352 2.040278 CCTCACCAGCCCCTCTCT 59.960 66.667 0.00 0.00 0.00 3.10
3285 3353 2.063378 CCTCACCAGCCCCTCTCTC 61.063 68.421 0.00 0.00 0.00 3.20
3286 3354 2.039624 TCACCAGCCCCTCTCTCC 59.960 66.667 0.00 0.00 0.00 3.71
3287 3355 3.086600 CACCAGCCCCTCTCTCCC 61.087 72.222 0.00 0.00 0.00 4.30
3288 3356 3.288381 ACCAGCCCCTCTCTCCCT 61.288 66.667 0.00 0.00 0.00 4.20
3289 3357 2.445654 CCAGCCCCTCTCTCCCTC 60.446 72.222 0.00 0.00 0.00 4.30
3290 3358 2.837291 CAGCCCCTCTCTCCCTCG 60.837 72.222 0.00 0.00 0.00 4.63
3291 3359 4.851214 AGCCCCTCTCTCCCTCGC 62.851 72.222 0.00 0.00 0.00 5.03
3294 3362 4.824515 CCCTCTCTCCCTCGCCGT 62.825 72.222 0.00 0.00 0.00 5.68
3295 3363 3.213402 CCTCTCTCCCTCGCCGTC 61.213 72.222 0.00 0.00 0.00 4.79
3296 3364 3.578272 CTCTCTCCCTCGCCGTCG 61.578 72.222 0.00 0.00 0.00 5.12
3321 3389 2.990479 CCTCCGGCAGGTAAAGCT 59.010 61.111 1.81 0.00 37.53 3.74
3322 3390 1.299976 CCTCCGGCAGGTAAAGCTT 59.700 57.895 1.81 0.00 37.53 3.74
3323 3391 1.026718 CCTCCGGCAGGTAAAGCTTG 61.027 60.000 0.00 0.00 37.53 4.01
3327 3395 2.202349 GCAGGTAAAGCTTGCGCG 60.202 61.111 0.00 0.00 40.34 6.86
3328 3396 2.480555 CAGGTAAAGCTTGCGCGG 59.519 61.111 8.83 0.00 42.32 6.46
3329 3397 2.032634 CAGGTAAAGCTTGCGCGGA 61.033 57.895 8.83 0.00 42.32 5.54
3330 3398 1.741770 AGGTAAAGCTTGCGCGGAG 60.742 57.895 8.83 4.33 42.32 4.63
3365 3433 3.767806 CTCTCTGGCCGCTGCTCA 61.768 66.667 0.00 0.00 37.74 4.26
3366 3434 4.074526 TCTCTGGCCGCTGCTCAC 62.075 66.667 0.00 0.00 37.74 3.51
3367 3435 4.079850 CTCTGGCCGCTGCTCACT 62.080 66.667 0.00 0.00 37.74 3.41
3368 3436 4.074526 TCTGGCCGCTGCTCACTC 62.075 66.667 0.00 0.00 37.74 3.51
3373 3441 4.504916 CCGCTGCTCACTCGGGAG 62.505 72.222 0.00 0.00 39.52 4.30
3374 3442 4.504916 CGCTGCTCACTCGGGAGG 62.505 72.222 0.00 0.00 35.41 4.30
3375 3443 3.071206 GCTGCTCACTCGGGAGGA 61.071 66.667 0.00 0.00 35.41 3.71
3376 3444 3.205395 CTGCTCACTCGGGAGGAG 58.795 66.667 3.26 3.26 45.03 3.69
3377 3445 2.422231 CTGCTCACTCGGGAGGAGG 61.422 68.421 9.56 0.00 46.13 4.30
3379 3447 2.443016 CTCACTCGGGAGGAGGGG 60.443 72.222 0.00 0.00 46.75 4.79
3380 3448 2.944954 TCACTCGGGAGGAGGGGA 60.945 66.667 0.00 0.00 46.75 4.81
3381 3449 2.305314 CTCACTCGGGAGGAGGGGAT 62.305 65.000 0.00 0.00 46.75 3.85
3382 3450 2.299727 TCACTCGGGAGGAGGGGATC 62.300 65.000 0.00 0.00 46.75 3.36
3383 3451 2.939298 CTCGGGAGGAGGGGATCT 59.061 66.667 0.00 0.00 39.22 2.75
3384 3452 1.228737 CTCGGGAGGAGGGGATCTC 60.229 68.421 0.00 0.00 39.22 2.75
3385 3453 2.598985 CGGGAGGAGGGGATCTCG 60.599 72.222 0.00 0.00 43.34 4.04
3386 3454 2.920384 GGGAGGAGGGGATCTCGC 60.920 72.222 0.00 0.00 43.34 5.03
3387 3455 2.123251 GGAGGAGGGGATCTCGCA 60.123 66.667 0.00 0.00 43.34 5.10
3388 3456 1.535202 GGAGGAGGGGATCTCGCAT 60.535 63.158 0.00 0.00 43.34 4.73
3389 3457 1.124477 GGAGGAGGGGATCTCGCATT 61.124 60.000 0.00 0.00 43.34 3.56
3390 3458 0.034616 GAGGAGGGGATCTCGCATTG 59.965 60.000 0.00 0.00 43.34 2.82
3391 3459 1.599240 GGAGGGGATCTCGCATTGC 60.599 63.158 0.00 0.00 43.34 3.56
3441 3509 4.504916 CAGCGTCCCTGCTCGAGG 62.505 72.222 15.58 0.00 45.23 4.63
3445 3513 3.760035 GTCCCTGCTCGAGGCGAA 61.760 66.667 15.58 0.00 45.43 4.70
3446 3514 3.452786 TCCCTGCTCGAGGCGAAG 61.453 66.667 15.58 1.41 45.43 3.79
3447 3515 4.521062 CCCTGCTCGAGGCGAAGG 62.521 72.222 15.58 9.82 45.43 3.46
3525 3593 4.681978 GCAGTCGTCGGGCCTGTT 62.682 66.667 12.43 0.00 0.00 3.16
3526 3594 2.432628 CAGTCGTCGGGCCTGTTC 60.433 66.667 12.43 5.47 0.00 3.18
3527 3595 4.052229 AGTCGTCGGGCCTGTTCG 62.052 66.667 12.43 17.19 0.00 3.95
3544 3612 3.052081 GGTCCCGATCCGATCTGG 58.948 66.667 11.65 11.65 40.09 3.86
3545 3613 2.574955 GGTCCCGATCCGATCTGGG 61.575 68.421 22.52 22.52 41.44 4.45
3546 3614 1.530891 GTCCCGATCCGATCTGGGA 60.531 63.158 25.12 25.12 44.26 4.37
3551 3619 3.382111 ATCCGATCTGGGATCCGC 58.618 61.111 5.45 0.00 43.35 5.54
3552 3620 1.533994 ATCCGATCTGGGATCCGCA 60.534 57.895 5.45 4.19 43.35 5.69
3553 3621 1.539560 ATCCGATCTGGGATCCGCAG 61.540 60.000 19.03 19.03 43.35 5.18
3593 3661 4.851214 GAGGGAGGCTCGGCTCCT 62.851 72.222 30.72 20.20 39.58 3.69
3597 3665 2.757917 GAGGCTCGGCTCCTCTGT 60.758 66.667 9.14 0.00 45.13 3.41
3598 3666 2.284258 AGGCTCGGCTCCTCTGTT 60.284 61.111 0.00 0.00 0.00 3.16
3599 3667 2.125350 GGCTCGGCTCCTCTGTTG 60.125 66.667 0.00 0.00 0.00 3.33
3600 3668 2.817396 GCTCGGCTCCTCTGTTGC 60.817 66.667 0.00 0.00 0.00 4.17
3601 3669 2.507992 CTCGGCTCCTCTGTTGCG 60.508 66.667 0.00 0.00 0.00 4.85
3602 3670 4.742201 TCGGCTCCTCTGTTGCGC 62.742 66.667 0.00 0.00 0.00 6.09
3605 3673 3.482783 GCTCCTCTGTTGCGCGTC 61.483 66.667 8.43 0.00 0.00 5.19
3606 3674 2.811317 CTCCTCTGTTGCGCGTCC 60.811 66.667 8.43 0.00 0.00 4.79
3607 3675 3.288308 CTCCTCTGTTGCGCGTCCT 62.288 63.158 8.43 0.00 0.00 3.85
3608 3676 3.114616 CCTCTGTTGCGCGTCCTG 61.115 66.667 8.43 0.03 0.00 3.86
3609 3677 3.114616 CTCTGTTGCGCGTCCTGG 61.115 66.667 8.43 0.00 0.00 4.45
3610 3678 3.573772 CTCTGTTGCGCGTCCTGGA 62.574 63.158 8.43 0.00 0.00 3.86
3611 3679 3.114616 CTGTTGCGCGTCCTGGAG 61.115 66.667 8.43 0.00 0.00 3.86
3612 3680 4.680237 TGTTGCGCGTCCTGGAGG 62.680 66.667 8.43 11.94 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.821332 CTCTCCGAAATGGCCCAGC 60.821 63.158 0.00 0.00 37.80 4.85
10 11 1.821332 GCTCTCCGAAATGGCCCAG 60.821 63.158 0.00 0.00 37.80 4.45
11 12 2.272146 GCTCTCCGAAATGGCCCA 59.728 61.111 0.00 0.00 37.80 5.36
12 13 2.517166 GGCTCTCCGAAATGGCCC 60.517 66.667 0.00 0.00 37.12 5.80
13 14 1.077429 AAGGCTCTCCGAAATGGCC 60.077 57.895 0.00 0.00 42.74 5.36
14 15 0.107459 AGAAGGCTCTCCGAAATGGC 60.107 55.000 0.00 0.00 37.80 4.40
15 16 1.661341 CAGAAGGCTCTCCGAAATGG 58.339 55.000 0.00 0.00 37.47 3.16
16 17 1.012841 GCAGAAGGCTCTCCGAAATG 58.987 55.000 0.00 0.00 40.25 2.32
17 18 0.107459 GGCAGAAGGCTCTCCGAAAT 60.107 55.000 0.00 0.00 44.01 2.17
18 19 1.296715 GGCAGAAGGCTCTCCGAAA 59.703 57.895 0.00 0.00 44.01 3.46
19 20 2.982130 GGCAGAAGGCTCTCCGAA 59.018 61.111 0.00 0.00 44.01 4.30
20 21 3.452786 CGGCAGAAGGCTCTCCGA 61.453 66.667 9.98 0.00 41.26 4.55
21 22 3.452786 TCGGCAGAAGGCTCTCCG 61.453 66.667 9.45 9.45 44.01 4.63
22 23 2.185608 GTCGGCAGAAGGCTCTCC 59.814 66.667 0.00 0.00 44.01 3.71
23 24 2.202676 CGTCGGCAGAAGGCTCTC 60.203 66.667 0.00 0.00 44.01 3.20
24 25 4.443266 GCGTCGGCAGAAGGCTCT 62.443 66.667 1.75 0.00 44.01 4.09
25 26 4.742201 TGCGTCGGCAGAAGGCTC 62.742 66.667 11.34 0.00 46.21 4.70
47 48 4.183686 ACATACGTCGACCGCCGG 62.184 66.667 10.58 0.00 41.42 6.13
48 49 2.947621 CACATACGTCGACCGCCG 60.948 66.667 10.58 0.00 41.42 6.46
49 50 1.870901 GTCACATACGTCGACCGCC 60.871 63.158 10.58 0.00 41.42 6.13
50 51 0.455633 AAGTCACATACGTCGACCGC 60.456 55.000 10.58 0.00 41.42 5.68
51 52 1.256652 CAAGTCACATACGTCGACCG 58.743 55.000 10.58 7.90 44.03 4.79
52 53 0.989890 GCAAGTCACATACGTCGACC 59.010 55.000 10.58 0.00 0.00 4.79
53 54 0.989890 GGCAAGTCACATACGTCGAC 59.010 55.000 5.18 5.18 0.00 4.20
54 55 0.455464 CGGCAAGTCACATACGTCGA 60.455 55.000 0.00 0.00 0.00 4.20
55 56 1.988409 CGGCAAGTCACATACGTCG 59.012 57.895 0.00 0.00 0.00 5.12
56 57 1.011968 TGCGGCAAGTCACATACGTC 61.012 55.000 0.00 0.00 0.00 4.34
57 58 1.005512 TGCGGCAAGTCACATACGT 60.006 52.632 0.00 0.00 0.00 3.57
58 59 1.709760 CTGCGGCAAGTCACATACG 59.290 57.895 3.44 0.00 0.00 3.06
59 60 1.021390 AGCTGCGGCAAGTCACATAC 61.021 55.000 21.93 0.00 41.70 2.39
60 61 0.740868 GAGCTGCGGCAAGTCACATA 60.741 55.000 21.93 0.00 41.70 2.29
61 62 2.033141 AGCTGCGGCAAGTCACAT 59.967 55.556 21.93 0.00 41.70 3.21
62 63 2.666190 GAGCTGCGGCAAGTCACA 60.666 61.111 21.93 0.00 41.70 3.58
63 64 3.782244 CGAGCTGCGGCAAGTCAC 61.782 66.667 21.93 2.76 41.70 3.67
64 65 3.807631 AACGAGCTGCGGCAAGTCA 62.808 57.895 21.93 0.00 46.49 3.41
65 66 3.016474 GAACGAGCTGCGGCAAGTC 62.016 63.158 21.93 7.80 46.49 3.01
66 67 3.044305 GAACGAGCTGCGGCAAGT 61.044 61.111 21.93 16.07 46.49 3.16
67 68 4.139420 CGAACGAGCTGCGGCAAG 62.139 66.667 21.93 15.36 46.49 4.01
71 72 4.514577 ATCCCGAACGAGCTGCGG 62.515 66.667 0.00 0.00 46.49 5.69
73 74 2.892425 CCATCCCGAACGAGCTGC 60.892 66.667 0.00 0.00 0.00 5.25
74 75 2.202932 CCCATCCCGAACGAGCTG 60.203 66.667 0.00 0.00 0.00 4.24
75 76 2.291043 AACCCATCCCGAACGAGCT 61.291 57.895 0.00 0.00 0.00 4.09
76 77 2.106683 CAACCCATCCCGAACGAGC 61.107 63.158 0.00 0.00 0.00 5.03
77 78 2.106683 GCAACCCATCCCGAACGAG 61.107 63.158 0.00 0.00 0.00 4.18
78 79 2.046700 GCAACCCATCCCGAACGA 60.047 61.111 0.00 0.00 0.00 3.85
79 80 1.748879 ATGCAACCCATCCCGAACG 60.749 57.895 0.00 0.00 0.00 3.95
80 81 1.666209 CCATGCAACCCATCCCGAAC 61.666 60.000 0.00 0.00 29.71 3.95
81 82 1.379710 CCATGCAACCCATCCCGAA 60.380 57.895 0.00 0.00 29.71 4.30
82 83 1.644437 ATCCATGCAACCCATCCCGA 61.644 55.000 0.00 0.00 29.71 5.14
83 84 0.756442 AATCCATGCAACCCATCCCG 60.756 55.000 0.00 0.00 29.71 5.14
84 85 1.499368 AAATCCATGCAACCCATCCC 58.501 50.000 0.00 0.00 29.71 3.85
85 86 3.070015 CCTTAAATCCATGCAACCCATCC 59.930 47.826 0.00 0.00 29.71 3.51
86 87 3.960102 TCCTTAAATCCATGCAACCCATC 59.040 43.478 0.00 0.00 29.71 3.51
87 88 3.992999 TCCTTAAATCCATGCAACCCAT 58.007 40.909 0.00 0.00 33.39 4.00
88 89 3.464720 TCCTTAAATCCATGCAACCCA 57.535 42.857 0.00 0.00 0.00 4.51
89 90 3.960102 TGATCCTTAAATCCATGCAACCC 59.040 43.478 0.00 0.00 0.00 4.11
90 91 5.596836 TTGATCCTTAAATCCATGCAACC 57.403 39.130 0.00 0.00 0.00 3.77
91 92 8.496707 AATTTTGATCCTTAAATCCATGCAAC 57.503 30.769 0.00 0.00 0.00 4.17
92 93 8.948145 CAAATTTTGATCCTTAAATCCATGCAA 58.052 29.630 2.88 0.00 0.00 4.08
93 94 8.319881 TCAAATTTTGATCCTTAAATCCATGCA 58.680 29.630 7.74 0.00 34.08 3.96
94 95 8.721019 TCAAATTTTGATCCTTAAATCCATGC 57.279 30.769 7.74 0.00 34.08 4.06
128 129 9.319143 GGCTCCTCATATATTGTGTTATACATC 57.681 37.037 0.00 0.00 39.48 3.06
129 130 7.981789 CGGCTCCTCATATATTGTGTTATACAT 59.018 37.037 0.00 0.00 39.48 2.29
130 131 7.320399 CGGCTCCTCATATATTGTGTTATACA 58.680 38.462 0.00 0.00 37.56 2.29
131 132 6.757010 CCGGCTCCTCATATATTGTGTTATAC 59.243 42.308 0.00 0.00 0.00 1.47
132 133 6.439375 ACCGGCTCCTCATATATTGTGTTATA 59.561 38.462 0.00 0.00 0.00 0.98
133 134 5.248477 ACCGGCTCCTCATATATTGTGTTAT 59.752 40.000 0.00 0.00 0.00 1.89
134 135 4.591498 ACCGGCTCCTCATATATTGTGTTA 59.409 41.667 0.00 0.00 0.00 2.41
135 136 3.391296 ACCGGCTCCTCATATATTGTGTT 59.609 43.478 0.00 0.00 0.00 3.32
136 137 2.972713 ACCGGCTCCTCATATATTGTGT 59.027 45.455 0.00 0.00 0.00 3.72
137 138 3.329386 CACCGGCTCCTCATATATTGTG 58.671 50.000 0.00 0.00 0.00 3.33
138 139 2.303022 CCACCGGCTCCTCATATATTGT 59.697 50.000 0.00 0.00 0.00 2.71
139 140 2.355108 CCCACCGGCTCCTCATATATTG 60.355 54.545 0.00 0.00 0.00 1.90
140 141 1.909302 CCCACCGGCTCCTCATATATT 59.091 52.381 0.00 0.00 0.00 1.28
141 142 1.203313 ACCCACCGGCTCCTCATATAT 60.203 52.381 0.00 0.00 0.00 0.86
142 143 0.190069 ACCCACCGGCTCCTCATATA 59.810 55.000 0.00 0.00 0.00 0.86
143 144 1.074471 ACCCACCGGCTCCTCATAT 60.074 57.895 0.00 0.00 0.00 1.78
144 145 2.063979 CACCCACCGGCTCCTCATA 61.064 63.158 0.00 0.00 0.00 2.15
145 146 3.402681 CACCCACCGGCTCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
156 157 4.314440 TCCGCAGACAGCACCCAC 62.314 66.667 0.00 0.00 46.13 4.61
157 158 4.314440 GTCCGCAGACAGCACCCA 62.314 66.667 0.00 0.00 46.13 4.51
159 160 4.664677 ACGTCCGCAGACAGCACC 62.665 66.667 0.20 0.00 46.13 5.01
160 161 3.406361 CACGTCCGCAGACAGCAC 61.406 66.667 0.20 0.00 46.13 4.40
163 164 2.807045 GAGCACGTCCGCAGACAG 60.807 66.667 0.20 0.00 43.73 3.51
164 165 4.700365 CGAGCACGTCCGCAGACA 62.700 66.667 0.20 0.00 43.73 3.41
186 187 4.695231 CCTATACGCCCGCGGACG 62.695 72.222 32.50 32.50 44.69 4.79
187 188 4.353437 CCCTATACGCCCGCGGAC 62.353 72.222 30.73 16.23 44.69 4.79
188 189 4.900704 ACCCTATACGCCCGCGGA 62.901 66.667 30.73 6.75 44.69 5.54
189 190 4.657824 CACCCTATACGCCCGCGG 62.658 72.222 21.04 21.04 44.69 6.46
191 192 4.982749 GGCACCCTATACGCCCGC 62.983 72.222 0.00 0.00 40.07 6.13
192 193 4.657824 CGGCACCCTATACGCCCG 62.658 72.222 0.00 0.00 43.17 6.13
193 194 4.309950 CCGGCACCCTATACGCCC 62.310 72.222 0.00 0.00 43.17 6.13
194 195 2.108278 AATCCGGCACCCTATACGCC 62.108 60.000 0.00 0.00 42.64 5.68
195 196 0.250166 AAATCCGGCACCCTATACGC 60.250 55.000 0.00 0.00 0.00 4.42
196 197 1.202604 ACAAATCCGGCACCCTATACG 60.203 52.381 0.00 0.00 0.00 3.06
197 198 2.490991 GACAAATCCGGCACCCTATAC 58.509 52.381 0.00 0.00 0.00 1.47
198 199 1.069513 CGACAAATCCGGCACCCTATA 59.930 52.381 0.00 0.00 0.00 1.31
199 200 0.179056 CGACAAATCCGGCACCCTAT 60.179 55.000 0.00 0.00 0.00 2.57
200 201 1.219664 CGACAAATCCGGCACCCTA 59.780 57.895 0.00 0.00 0.00 3.53
201 202 2.046314 CGACAAATCCGGCACCCT 60.046 61.111 0.00 0.00 0.00 4.34
202 203 3.131478 CCGACAAATCCGGCACCC 61.131 66.667 0.00 0.00 40.54 4.61
209 210 2.106683 CAGCCGGACCGACAAATCC 61.107 63.158 17.49 0.00 0.00 3.01
210 211 2.750888 GCAGCCGGACCGACAAATC 61.751 63.158 17.49 0.00 0.00 2.17
211 212 2.746277 GCAGCCGGACCGACAAAT 60.746 61.111 17.49 0.00 0.00 2.32
212 213 4.243008 TGCAGCCGGACCGACAAA 62.243 61.111 17.49 0.00 0.00 2.83
213 214 4.680237 CTGCAGCCGGACCGACAA 62.680 66.667 17.49 0.00 0.00 3.18
215 216 4.148825 ATCTGCAGCCGGACCGAC 62.149 66.667 17.49 2.80 0.00 4.79
216 217 4.147449 CATCTGCAGCCGGACCGA 62.147 66.667 17.49 0.00 0.00 4.69
218 219 4.479993 AGCATCTGCAGCCGGACC 62.480 66.667 9.47 0.00 45.16 4.46
239 240 4.433615 TGGAGTTTCACTCGATTGATAGC 58.566 43.478 6.27 0.76 45.96 2.97
244 245 5.444613 CGTACATTGGAGTTTCACTCGATTG 60.445 44.000 0.00 0.00 45.96 2.67
259 260 1.070758 AGCCATCCTAGCGTACATTGG 59.929 52.381 0.00 0.00 34.64 3.16
261 262 1.344763 GGAGCCATCCTAGCGTACATT 59.655 52.381 0.00 0.00 42.94 2.71
269 270 2.555199 CTTTTCACGGAGCCATCCTAG 58.445 52.381 0.00 0.00 44.22 3.02
284 285 2.730402 GCCTTCAATCAGCGAGCTTTTC 60.730 50.000 0.00 0.00 0.00 2.29
293 294 0.674895 ACCTCGTGCCTTCAATCAGC 60.675 55.000 0.00 0.00 0.00 4.26
381 382 4.172512 AGATGAGCTGGCCTGGCG 62.173 66.667 13.40 0.22 34.52 5.69
403 404 2.723124 AATACTTTGCTTGCCCAACG 57.277 45.000 0.00 0.00 0.00 4.10
439 446 6.709018 TCTGCAATCATCATTCATCAATGT 57.291 33.333 0.00 0.00 40.47 2.71
443 450 4.204012 TGCTCTGCAATCATCATTCATCA 58.796 39.130 0.00 0.00 34.76 3.07
444 451 4.830826 TGCTCTGCAATCATCATTCATC 57.169 40.909 0.00 0.00 34.76 2.92
445 452 4.827284 TGATGCTCTGCAATCATCATTCAT 59.173 37.500 16.51 0.00 43.62 2.57
446 453 4.204012 TGATGCTCTGCAATCATCATTCA 58.796 39.130 16.51 1.95 43.62 2.57
447 454 4.320567 CCTGATGCTCTGCAATCATCATTC 60.321 45.833 19.17 1.64 43.63 2.67
448 455 3.570125 CCTGATGCTCTGCAATCATCATT 59.430 43.478 19.17 0.00 43.63 2.57
449 456 3.149981 CCTGATGCTCTGCAATCATCAT 58.850 45.455 19.17 6.13 43.63 2.45
470 477 0.679505 GGGTTTGGGTTTTGGAGAGC 59.320 55.000 0.00 0.00 0.00 4.09
471 478 2.365293 CAAGGGTTTGGGTTTTGGAGAG 59.635 50.000 0.00 0.00 0.00 3.20
472 479 2.393646 CAAGGGTTTGGGTTTTGGAGA 58.606 47.619 0.00 0.00 0.00 3.71
483 490 1.875963 CGCTAGCACCAAGGGTTTG 59.124 57.895 16.45 0.00 31.02 2.93
484 491 1.971695 GCGCTAGCACCAAGGGTTT 60.972 57.895 16.45 0.00 44.35 3.27
485 492 2.359975 GCGCTAGCACCAAGGGTT 60.360 61.111 16.45 0.00 44.35 4.11
582 592 1.908619 GCAGAATGGAATTTTGGGGGT 59.091 47.619 0.00 0.00 38.72 4.95
633 650 2.700694 GTACATGGCGCGTTTATTGTC 58.299 47.619 8.43 0.00 0.00 3.18
635 652 1.061421 ACGTACATGGCGCGTTTATTG 59.939 47.619 8.43 1.43 35.11 1.90
657 674 2.663852 AGGCACGTACCGTTGCAC 60.664 61.111 0.00 1.81 38.32 4.57
658 675 2.663520 CAGGCACGTACCGTTGCA 60.664 61.111 0.00 0.00 38.32 4.08
659 676 2.663852 ACAGGCACGTACCGTTGC 60.664 61.111 0.00 1.03 38.32 4.17
660 677 2.950172 GCACAGGCACGTACCGTTG 61.950 63.158 0.00 1.78 38.32 4.10
661 678 2.663852 GCACAGGCACGTACCGTT 60.664 61.111 0.00 0.00 38.32 4.44
711 728 2.829003 CATGCTCTGGCTGGGCTG 60.829 66.667 17.48 9.16 39.59 4.85
714 731 3.138798 GTGCATGCTCTGGCTGGG 61.139 66.667 20.33 0.00 39.59 4.45
844 878 3.133721 GTGCTCTCTCTCTCTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
845 879 3.118629 TGTGCTCTCTCTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
904 938 1.445871 CACTCAGCAGTAGCATTGCA 58.554 50.000 11.91 0.00 45.49 4.08
964 998 2.899339 GCAAGCTCTGATCGGCCC 60.899 66.667 0.00 0.00 0.00 5.80
1149 1183 4.667935 TTCTCCTTGGCCCCCGGA 62.668 66.667 0.73 1.96 0.00 5.14
1407 1441 4.498241 TGAAGACGGACTGAATCTTGATG 58.502 43.478 0.00 0.00 32.83 3.07
1459 1493 4.886121 GAACCGGGGGATCGACGC 62.886 72.222 6.32 0.00 0.00 5.19
1460 1494 2.718073 AAGAACCGGGGGATCGACG 61.718 63.158 6.32 0.00 29.47 5.12
1461 1495 1.153429 CAAGAACCGGGGGATCGAC 60.153 63.158 6.32 0.00 29.47 4.20
1487 1521 1.906966 GCAAATGTGCGATGACTTTCG 59.093 47.619 0.00 0.00 41.93 3.46
1511 1546 7.118101 GCAGCCTCTCATCAGATAAATAGAAAG 59.882 40.741 0.00 0.00 0.00 2.62
1515 1550 6.040209 AGCAGCCTCTCATCAGATAAATAG 57.960 41.667 0.00 0.00 0.00 1.73
1519 1554 3.181457 CCAAGCAGCCTCTCATCAGATAA 60.181 47.826 0.00 0.00 0.00 1.75
1520 1555 2.367894 CCAAGCAGCCTCTCATCAGATA 59.632 50.000 0.00 0.00 0.00 1.98
1521 1556 1.141254 CCAAGCAGCCTCTCATCAGAT 59.859 52.381 0.00 0.00 0.00 2.90
1522 1557 0.540454 CCAAGCAGCCTCTCATCAGA 59.460 55.000 0.00 0.00 0.00 3.27
1523 1558 0.252479 ACCAAGCAGCCTCTCATCAG 59.748 55.000 0.00 0.00 0.00 2.90
1524 1559 0.694771 AACCAAGCAGCCTCTCATCA 59.305 50.000 0.00 0.00 0.00 3.07
1525 1560 1.377536 GAACCAAGCAGCCTCTCATC 58.622 55.000 0.00 0.00 0.00 2.92
1526 1561 0.392193 CGAACCAAGCAGCCTCTCAT 60.392 55.000 0.00 0.00 0.00 2.90
1537 1572 0.249398 ATCCCGAGGAACGAACCAAG 59.751 55.000 0.00 0.00 45.77 3.61
1818 1854 4.335416 CAAAGTTTAAGAGAGGCCCATCA 58.665 43.478 0.00 0.00 0.00 3.07
1819 1855 3.696548 CCAAAGTTTAAGAGAGGCCCATC 59.303 47.826 0.00 0.00 0.00 3.51
1853 1889 1.829096 TTCGGTCCGTGTGTCTCCA 60.829 57.895 11.88 0.00 0.00 3.86
1864 1900 1.730612 GACTTTTCGATGGTTCGGTCC 59.269 52.381 0.00 0.00 45.53 4.46
1877 1913 7.913821 ACAACGAAATTTAGTTCCAGACTTTTC 59.086 33.333 13.02 0.00 39.86 2.29
1883 1919 5.369833 TCCACAACGAAATTTAGTTCCAGA 58.630 37.500 13.02 7.75 0.00 3.86
1891 1927 4.520874 TCCTGCATTCCACAACGAAATTTA 59.479 37.500 0.00 0.00 0.00 1.40
1902 1938 0.460987 CTCCGTCTCCTGCATTCCAC 60.461 60.000 0.00 0.00 0.00 4.02
2156 2192 1.351012 CGTCCGAGGCGTAGTAGTG 59.649 63.158 0.00 0.00 0.00 2.74
2642 2690 2.031437 GCTGCCTGATTCGATTTCAGAC 59.969 50.000 21.34 13.76 42.63 3.51
2647 2695 1.718757 GCGGCTGCCTGATTCGATTT 61.719 55.000 17.92 0.00 33.98 2.17
2690 2744 4.041691 ACTTGTTTGTCCATACAGGCTACT 59.958 41.667 0.00 0.00 36.83 2.57
2694 2748 3.305335 CCAACTTGTTTGTCCATACAGGC 60.305 47.826 1.06 0.00 36.83 4.85
2698 2752 3.317993 AGTGCCAACTTGTTTGTCCATAC 59.682 43.478 0.00 0.00 30.14 2.39
2701 2755 1.476085 CAGTGCCAACTTGTTTGTCCA 59.524 47.619 0.00 0.00 32.98 4.02
2780 2848 2.802816 GACCACTAGCACACACTGAAAG 59.197 50.000 0.00 0.00 42.29 2.62
2832 2900 2.101965 GCACGCAGCACAAACACA 59.898 55.556 0.00 0.00 44.79 3.72
2842 2910 1.005294 GCAATGTTCTTGGCACGCAG 61.005 55.000 0.00 0.00 0.00 5.18
2843 2911 1.007502 GCAATGTTCTTGGCACGCA 60.008 52.632 0.00 0.00 0.00 5.24
2844 2912 0.388907 ATGCAATGTTCTTGGCACGC 60.389 50.000 0.00 0.00 39.34 5.34
2890 2958 4.217983 ACACAAACGAGGTACCAACAAAAA 59.782 37.500 15.94 0.00 0.00 1.94
2895 2963 3.487879 CCAAACACAAACGAGGTACCAAC 60.488 47.826 15.94 6.86 0.00 3.77
2901 2969 3.020984 ACAATCCAAACACAAACGAGGT 58.979 40.909 0.00 0.00 0.00 3.85
2949 3017 5.399858 TGTACGACTAGAACTTGATTGCTC 58.600 41.667 0.00 0.00 0.00 4.26
2954 3022 5.720202 TGCAATGTACGACTAGAACTTGAT 58.280 37.500 0.00 0.00 0.00 2.57
2972 3040 6.269315 CGTACTCTTAATCTCACTCTGCAAT 58.731 40.000 0.00 0.00 0.00 3.56
2980 3048 4.634184 TCAGCCGTACTCTTAATCTCAC 57.366 45.455 0.00 0.00 0.00 3.51
2996 3064 2.147150 GACACTGGAACTTCTTCAGCC 58.853 52.381 0.00 0.00 0.00 4.85
3039 3107 2.262423 ACCCGAGGGATACGTAGTAC 57.738 55.000 16.26 0.00 42.11 2.73
3040 3108 2.172505 TGAACCCGAGGGATACGTAGTA 59.827 50.000 16.26 0.00 43.00 1.82
3041 3109 1.064463 TGAACCCGAGGGATACGTAGT 60.064 52.381 16.26 0.00 41.48 2.73
3042 3110 1.607628 CTGAACCCGAGGGATACGTAG 59.392 57.143 16.26 0.84 38.96 3.51
3043 3111 1.064463 ACTGAACCCGAGGGATACGTA 60.064 52.381 16.26 0.00 38.96 3.57
3044 3112 0.324091 ACTGAACCCGAGGGATACGT 60.324 55.000 16.26 0.00 38.96 3.57
3045 3113 0.822164 AACTGAACCCGAGGGATACG 59.178 55.000 16.26 3.23 38.96 3.06
3046 3114 2.500504 AGAAACTGAACCCGAGGGATAC 59.499 50.000 16.26 6.16 38.96 2.24
3047 3115 2.500098 CAGAAACTGAACCCGAGGGATA 59.500 50.000 16.26 0.00 34.60 2.59
3048 3116 1.279271 CAGAAACTGAACCCGAGGGAT 59.721 52.381 16.26 2.06 34.60 3.85
3049 3117 0.685097 CAGAAACTGAACCCGAGGGA 59.315 55.000 16.26 0.00 34.60 4.20
3050 3118 0.396811 ACAGAAACTGAACCCGAGGG 59.603 55.000 6.63 6.63 36.93 4.30
3051 3119 2.256117 AACAGAAACTGAACCCGAGG 57.744 50.000 5.76 0.00 35.18 4.63
3052 3120 3.467803 AGAAACAGAAACTGAACCCGAG 58.532 45.455 5.76 0.00 35.18 4.63
3053 3121 3.553828 AGAAACAGAAACTGAACCCGA 57.446 42.857 5.76 0.00 35.18 5.14
3054 3122 3.303132 CGAAGAAACAGAAACTGAACCCG 60.303 47.826 5.76 0.00 35.18 5.28
3055 3123 3.875134 TCGAAGAAACAGAAACTGAACCC 59.125 43.478 5.76 0.00 35.18 4.11
3056 3124 5.479716 TTCGAAGAAACAGAAACTGAACC 57.520 39.130 5.76 0.00 45.90 3.62
3057 3125 8.120465 TGTATTTCGAAGAAACAGAAACTGAAC 58.880 33.333 5.76 0.00 45.90 3.18
3058 3126 8.203937 TGTATTTCGAAGAAACAGAAACTGAA 57.796 30.769 5.76 0.00 45.90 3.02
3059 3127 7.494625 ACTGTATTTCGAAGAAACAGAAACTGA 59.505 33.333 28.53 2.12 45.90 3.41
3060 3128 7.630924 ACTGTATTTCGAAGAAACAGAAACTG 58.369 34.615 28.53 12.90 45.90 3.16
3061 3129 7.787725 ACTGTATTTCGAAGAAACAGAAACT 57.212 32.000 28.53 13.55 45.90 2.66
3062 3130 8.762426 ACTACTGTATTTCGAAGAAACAGAAAC 58.238 33.333 28.53 9.37 45.90 2.78
3063 3131 8.882415 ACTACTGTATTTCGAAGAAACAGAAA 57.118 30.769 28.53 19.59 45.90 2.52
3065 3133 9.784680 GATACTACTGTATTTCGAAGAAACAGA 57.215 33.333 28.53 17.58 39.76 3.41
3066 3134 9.790389 AGATACTACTGTATTTCGAAGAAACAG 57.210 33.333 23.81 23.81 39.76 3.16
3069 3137 9.084164 GCAAGATACTACTGTATTTCGAAGAAA 57.916 33.333 0.00 0.00 39.76 2.52
3070 3138 8.467598 AGCAAGATACTACTGTATTTCGAAGAA 58.532 33.333 0.00 0.00 39.76 2.52
3071 3139 7.997482 AGCAAGATACTACTGTATTTCGAAGA 58.003 34.615 0.00 0.00 39.29 2.87
3072 3140 7.915923 TGAGCAAGATACTACTGTATTTCGAAG 59.084 37.037 0.00 0.00 39.29 3.79
3073 3141 7.768240 TGAGCAAGATACTACTGTATTTCGAA 58.232 34.615 0.00 0.00 39.29 3.71
3074 3142 7.329588 TGAGCAAGATACTACTGTATTTCGA 57.670 36.000 0.00 0.00 39.29 3.71
3075 3143 7.987268 TTGAGCAAGATACTACTGTATTTCG 57.013 36.000 0.00 0.00 39.29 3.46
3076 3144 9.319143 ACATTGAGCAAGATACTACTGTATTTC 57.681 33.333 0.00 0.00 39.29 2.17
3077 3145 9.672673 AACATTGAGCAAGATACTACTGTATTT 57.327 29.630 0.00 0.00 39.29 1.40
3078 3146 9.672673 AAACATTGAGCAAGATACTACTGTATT 57.327 29.630 0.00 0.00 39.29 1.89
3079 3147 9.102757 CAAACATTGAGCAAGATACTACTGTAT 57.897 33.333 0.00 0.00 41.65 2.29
3080 3148 7.549134 CCAAACATTGAGCAAGATACTACTGTA 59.451 37.037 0.00 0.00 0.00 2.74
3081 3149 6.372659 CCAAACATTGAGCAAGATACTACTGT 59.627 38.462 0.00 0.00 0.00 3.55
3082 3150 6.183360 CCCAAACATTGAGCAAGATACTACTG 60.183 42.308 0.00 0.00 0.00 2.74
3083 3151 5.882557 CCCAAACATTGAGCAAGATACTACT 59.117 40.000 0.00 0.00 0.00 2.57
3084 3152 5.880332 TCCCAAACATTGAGCAAGATACTAC 59.120 40.000 0.00 0.00 0.00 2.73
3085 3153 6.061022 TCCCAAACATTGAGCAAGATACTA 57.939 37.500 0.00 0.00 0.00 1.82
3086 3154 4.922206 TCCCAAACATTGAGCAAGATACT 58.078 39.130 0.00 0.00 0.00 2.12
3087 3155 5.585390 CATCCCAAACATTGAGCAAGATAC 58.415 41.667 0.00 0.00 0.00 2.24
3088 3156 4.098349 GCATCCCAAACATTGAGCAAGATA 59.902 41.667 0.00 0.00 0.00 1.98
3089 3157 3.118884 GCATCCCAAACATTGAGCAAGAT 60.119 43.478 0.00 0.00 0.00 2.40
3090 3158 2.231964 GCATCCCAAACATTGAGCAAGA 59.768 45.455 0.00 0.00 0.00 3.02
3091 3159 2.232941 AGCATCCCAAACATTGAGCAAG 59.767 45.455 0.00 0.00 0.00 4.01
3092 3160 2.250031 AGCATCCCAAACATTGAGCAA 58.750 42.857 0.00 0.00 0.00 3.91
3093 3161 1.927487 AGCATCCCAAACATTGAGCA 58.073 45.000 0.00 0.00 0.00 4.26
3094 3162 3.056322 AGAAAGCATCCCAAACATTGAGC 60.056 43.478 0.00 0.00 0.00 4.26
3095 3163 4.796038 AGAAAGCATCCCAAACATTGAG 57.204 40.909 0.00 0.00 0.00 3.02
3096 3164 5.324409 AGTAGAAAGCATCCCAAACATTGA 58.676 37.500 0.00 0.00 0.00 2.57
3097 3165 5.649782 AGTAGAAAGCATCCCAAACATTG 57.350 39.130 0.00 0.00 0.00 2.82
3098 3166 6.012745 AGAAGTAGAAAGCATCCCAAACATT 58.987 36.000 0.00 0.00 0.00 2.71
3099 3167 5.574188 AGAAGTAGAAAGCATCCCAAACAT 58.426 37.500 0.00 0.00 0.00 2.71
3100 3168 4.985538 AGAAGTAGAAAGCATCCCAAACA 58.014 39.130 0.00 0.00 0.00 2.83
3101 3169 7.448748 TTTAGAAGTAGAAAGCATCCCAAAC 57.551 36.000 0.00 0.00 0.00 2.93
3102 3170 8.650143 AATTTAGAAGTAGAAAGCATCCCAAA 57.350 30.769 0.00 0.00 0.00 3.28
3103 3171 8.109634 AGAATTTAGAAGTAGAAAGCATCCCAA 58.890 33.333 0.00 0.00 0.00 4.12
3104 3172 7.633789 AGAATTTAGAAGTAGAAAGCATCCCA 58.366 34.615 0.00 0.00 0.00 4.37
3105 3173 9.614792 TTAGAATTTAGAAGTAGAAAGCATCCC 57.385 33.333 0.00 0.00 0.00 3.85
3109 3177 9.314321 CCGATTAGAATTTAGAAGTAGAAAGCA 57.686 33.333 0.00 0.00 0.00 3.91
3110 3178 9.315525 ACCGATTAGAATTTAGAAGTAGAAAGC 57.684 33.333 0.00 0.00 0.00 3.51
3116 3184 9.941664 CGTAGAACCGATTAGAATTTAGAAGTA 57.058 33.333 0.00 0.00 0.00 2.24
3117 3185 7.919621 CCGTAGAACCGATTAGAATTTAGAAGT 59.080 37.037 0.00 0.00 0.00 3.01
3118 3186 7.919621 ACCGTAGAACCGATTAGAATTTAGAAG 59.080 37.037 0.00 0.00 0.00 2.85
3119 3187 7.775120 ACCGTAGAACCGATTAGAATTTAGAA 58.225 34.615 0.00 0.00 0.00 2.10
3120 3188 7.338800 ACCGTAGAACCGATTAGAATTTAGA 57.661 36.000 0.00 0.00 0.00 2.10
3121 3189 8.562892 TCTACCGTAGAACCGATTAGAATTTAG 58.437 37.037 5.75 0.00 0.00 1.85
3122 3190 8.450578 TCTACCGTAGAACCGATTAGAATTTA 57.549 34.615 5.75 0.00 0.00 1.40
3123 3191 7.284034 TCTCTACCGTAGAACCGATTAGAATTT 59.716 37.037 9.54 0.00 33.75 1.82
3124 3192 6.769822 TCTCTACCGTAGAACCGATTAGAATT 59.230 38.462 9.54 0.00 33.75 2.17
3125 3193 6.294473 TCTCTACCGTAGAACCGATTAGAAT 58.706 40.000 9.54 0.00 33.75 2.40
3126 3194 5.674525 TCTCTACCGTAGAACCGATTAGAA 58.325 41.667 9.54 0.00 33.75 2.10
3127 3195 5.282055 TCTCTACCGTAGAACCGATTAGA 57.718 43.478 9.54 0.00 33.75 2.10
3128 3196 5.699915 TCATCTCTACCGTAGAACCGATTAG 59.300 44.000 9.54 0.33 33.75 1.73
3129 3197 5.614308 TCATCTCTACCGTAGAACCGATTA 58.386 41.667 9.54 0.00 33.75 1.75
3130 3198 4.458397 TCATCTCTACCGTAGAACCGATT 58.542 43.478 9.54 0.00 33.75 3.34
3131 3199 4.082665 TCATCTCTACCGTAGAACCGAT 57.917 45.455 9.54 6.39 33.75 4.18
3132 3200 3.548745 TCATCTCTACCGTAGAACCGA 57.451 47.619 9.54 4.41 33.75 4.69
3133 3201 4.753610 TGTATCATCTCTACCGTAGAACCG 59.246 45.833 9.54 0.00 33.75 4.44
3134 3202 6.630444 TTGTATCATCTCTACCGTAGAACC 57.370 41.667 9.54 0.00 33.75 3.62
3135 3203 8.350722 TCAATTGTATCATCTCTACCGTAGAAC 58.649 37.037 9.54 4.64 33.75 3.01
3136 3204 8.459911 TCAATTGTATCATCTCTACCGTAGAA 57.540 34.615 9.54 2.14 33.75 2.10
3137 3205 8.637196 ATCAATTGTATCATCTCTACCGTAGA 57.363 34.615 8.01 8.01 0.00 2.59
3140 3208 8.861086 AGTTATCAATTGTATCATCTCTACCGT 58.139 33.333 5.13 0.00 0.00 4.83
3141 3209 9.698309 AAGTTATCAATTGTATCATCTCTACCG 57.302 33.333 5.13 0.00 0.00 4.02
3148 3216 9.941664 CCTGAACAAGTTATCAATTGTATCATC 57.058 33.333 5.13 0.00 38.66 2.92
3149 3217 8.906867 CCCTGAACAAGTTATCAATTGTATCAT 58.093 33.333 5.13 0.00 38.66 2.45
3150 3218 8.106462 TCCCTGAACAAGTTATCAATTGTATCA 58.894 33.333 5.13 0.61 38.66 2.15
3151 3219 8.506168 TCCCTGAACAAGTTATCAATTGTATC 57.494 34.615 5.13 0.00 38.66 2.24
3152 3220 7.557719 CCTCCCTGAACAAGTTATCAATTGTAT 59.442 37.037 5.13 0.80 38.66 2.29
3153 3221 6.884295 CCTCCCTGAACAAGTTATCAATTGTA 59.116 38.462 5.13 0.00 38.66 2.41
3154 3222 5.711976 CCTCCCTGAACAAGTTATCAATTGT 59.288 40.000 5.13 0.00 41.28 2.71
3155 3223 5.711976 ACCTCCCTGAACAAGTTATCAATTG 59.288 40.000 0.00 0.00 0.00 2.32
3156 3224 5.892348 ACCTCCCTGAACAAGTTATCAATT 58.108 37.500 0.00 0.00 0.00 2.32
3157 3225 5.014123 TGACCTCCCTGAACAAGTTATCAAT 59.986 40.000 0.00 0.00 0.00 2.57
3158 3226 4.349636 TGACCTCCCTGAACAAGTTATCAA 59.650 41.667 0.00 0.00 0.00 2.57
3159 3227 3.907474 TGACCTCCCTGAACAAGTTATCA 59.093 43.478 0.00 0.00 0.00 2.15
3160 3228 4.553330 TGACCTCCCTGAACAAGTTATC 57.447 45.455 0.00 0.00 0.00 1.75
3161 3229 5.014123 TCAATGACCTCCCTGAACAAGTTAT 59.986 40.000 0.00 0.00 0.00 1.89
3162 3230 4.349636 TCAATGACCTCCCTGAACAAGTTA 59.650 41.667 0.00 0.00 0.00 2.24
3163 3231 3.138283 TCAATGACCTCCCTGAACAAGTT 59.862 43.478 0.00 0.00 0.00 2.66
3164 3232 2.711009 TCAATGACCTCCCTGAACAAGT 59.289 45.455 0.00 0.00 0.00 3.16
3165 3233 3.423539 TCAATGACCTCCCTGAACAAG 57.576 47.619 0.00 0.00 0.00 3.16
3166 3234 3.754965 CTTCAATGACCTCCCTGAACAA 58.245 45.455 0.00 0.00 0.00 2.83
3167 3235 2.553028 GCTTCAATGACCTCCCTGAACA 60.553 50.000 0.00 0.00 0.00 3.18
3168 3236 2.087646 GCTTCAATGACCTCCCTGAAC 58.912 52.381 0.00 0.00 0.00 3.18
3169 3237 1.339055 CGCTTCAATGACCTCCCTGAA 60.339 52.381 0.00 0.00 0.00 3.02
3170 3238 0.250234 CGCTTCAATGACCTCCCTGA 59.750 55.000 0.00 0.00 0.00 3.86
3171 3239 0.745845 CCGCTTCAATGACCTCCCTG 60.746 60.000 0.00 0.00 0.00 4.45
3172 3240 1.201429 ACCGCTTCAATGACCTCCCT 61.201 55.000 0.00 0.00 0.00 4.20
3173 3241 0.539986 TACCGCTTCAATGACCTCCC 59.460 55.000 0.00 0.00 0.00 4.30
3174 3242 2.007608 GTTACCGCTTCAATGACCTCC 58.992 52.381 0.00 0.00 0.00 4.30
3175 3243 2.695359 TGTTACCGCTTCAATGACCTC 58.305 47.619 0.00 0.00 0.00 3.85
3176 3244 2.851263 TGTTACCGCTTCAATGACCT 57.149 45.000 0.00 0.00 0.00 3.85
3177 3245 3.006940 TGATGTTACCGCTTCAATGACC 58.993 45.455 0.00 0.00 0.00 4.02
3178 3246 3.684788 AGTGATGTTACCGCTTCAATGAC 59.315 43.478 0.00 0.00 0.00 3.06
3179 3247 3.937814 AGTGATGTTACCGCTTCAATGA 58.062 40.909 0.00 0.00 0.00 2.57
3180 3248 4.651994 GAAGTGATGTTACCGCTTCAATG 58.348 43.478 10.44 0.00 45.46 2.82
3181 3249 4.946784 GAAGTGATGTTACCGCTTCAAT 57.053 40.909 10.44 0.00 45.46 2.57
3184 3252 2.094417 GCTGAAGTGATGTTACCGCTTC 59.906 50.000 0.00 0.00 46.01 3.86
3185 3253 2.076863 GCTGAAGTGATGTTACCGCTT 58.923 47.619 0.00 0.00 37.10 4.68
3186 3254 1.676014 GGCTGAAGTGATGTTACCGCT 60.676 52.381 0.00 0.00 0.00 5.52
3187 3255 0.727398 GGCTGAAGTGATGTTACCGC 59.273 55.000 0.00 0.00 0.00 5.68
3188 3256 1.369625 GGGCTGAAGTGATGTTACCG 58.630 55.000 0.00 0.00 0.00 4.02
3189 3257 1.682087 GGGGGCTGAAGTGATGTTACC 60.682 57.143 0.00 0.00 0.00 2.85
3190 3258 1.751437 GGGGGCTGAAGTGATGTTAC 58.249 55.000 0.00 0.00 0.00 2.50
3191 3259 0.251916 CGGGGGCTGAAGTGATGTTA 59.748 55.000 0.00 0.00 0.00 2.41
3192 3260 1.002134 CGGGGGCTGAAGTGATGTT 60.002 57.895 0.00 0.00 0.00 2.71
3193 3261 2.671070 CGGGGGCTGAAGTGATGT 59.329 61.111 0.00 0.00 0.00 3.06
3194 3262 2.825836 GCGGGGGCTGAAGTGATG 60.826 66.667 0.00 0.00 0.00 3.07
3195 3263 4.473520 CGCGGGGGCTGAAGTGAT 62.474 66.667 0.00 0.00 0.00 3.06
3258 3326 4.106925 CTGGTGAGGGGAGGCTGC 62.107 72.222 0.00 0.00 0.00 5.25
3259 3327 4.106925 GCTGGTGAGGGGAGGCTG 62.107 72.222 0.00 0.00 0.00 4.85
3263 3331 4.748798 AGGGGCTGGTGAGGGGAG 62.749 72.222 0.00 0.00 0.00 4.30
3264 3332 4.741239 GAGGGGCTGGTGAGGGGA 62.741 72.222 0.00 0.00 0.00 4.81
3265 3333 4.748798 AGAGGGGCTGGTGAGGGG 62.749 72.222 0.00 0.00 0.00 4.79
3266 3334 3.086600 GAGAGGGGCTGGTGAGGG 61.087 72.222 0.00 0.00 0.00 4.30
3267 3335 2.040278 AGAGAGGGGCTGGTGAGG 59.960 66.667 0.00 0.00 0.00 3.86
3268 3336 2.063378 GGAGAGAGGGGCTGGTGAG 61.063 68.421 0.00 0.00 0.00 3.51
3269 3337 2.039624 GGAGAGAGGGGCTGGTGA 59.960 66.667 0.00 0.00 0.00 4.02
3270 3338 3.086600 GGGAGAGAGGGGCTGGTG 61.087 72.222 0.00 0.00 0.00 4.17
3271 3339 3.288381 AGGGAGAGAGGGGCTGGT 61.288 66.667 0.00 0.00 0.00 4.00
3272 3340 2.445654 GAGGGAGAGAGGGGCTGG 60.446 72.222 0.00 0.00 0.00 4.85
3273 3341 2.837291 CGAGGGAGAGAGGGGCTG 60.837 72.222 0.00 0.00 0.00 4.85
3274 3342 4.851214 GCGAGGGAGAGAGGGGCT 62.851 72.222 0.00 0.00 0.00 5.19
3277 3345 4.824515 ACGGCGAGGGAGAGAGGG 62.825 72.222 16.62 0.00 0.00 4.30
3278 3346 3.213402 GACGGCGAGGGAGAGAGG 61.213 72.222 16.62 0.00 0.00 3.69
3279 3347 3.578272 CGACGGCGAGGGAGAGAG 61.578 72.222 16.62 0.00 40.82 3.20
3305 3373 1.648467 GCAAGCTTTACCTGCCGGAG 61.648 60.000 5.05 0.00 0.00 4.63
3306 3374 1.674322 GCAAGCTTTACCTGCCGGA 60.674 57.895 5.05 0.00 0.00 5.14
3307 3375 2.877691 GCAAGCTTTACCTGCCGG 59.122 61.111 0.00 0.00 0.00 6.13
3308 3376 2.480555 CGCAAGCTTTACCTGCCG 59.519 61.111 0.00 0.00 0.00 5.69
3348 3416 3.767806 TGAGCAGCGGCCAGAGAG 61.768 66.667 4.82 0.00 42.56 3.20
3349 3417 4.074526 GTGAGCAGCGGCCAGAGA 62.075 66.667 4.82 0.00 42.56 3.10
3350 3418 4.079850 AGTGAGCAGCGGCCAGAG 62.080 66.667 4.82 0.00 42.56 3.35
3351 3419 4.074526 GAGTGAGCAGCGGCCAGA 62.075 66.667 4.82 0.00 42.56 3.86
3356 3424 4.504916 CTCCCGAGTGAGCAGCGG 62.505 72.222 0.00 0.00 44.42 5.52
3357 3425 4.504916 CCTCCCGAGTGAGCAGCG 62.505 72.222 0.00 0.00 0.00 5.18
3358 3426 3.071206 TCCTCCCGAGTGAGCAGC 61.071 66.667 0.00 0.00 0.00 5.25
3359 3427 2.422231 CCTCCTCCCGAGTGAGCAG 61.422 68.421 0.00 0.00 36.82 4.24
3360 3428 2.363018 CCTCCTCCCGAGTGAGCA 60.363 66.667 0.00 0.00 36.82 4.26
3361 3429 3.151022 CCCTCCTCCCGAGTGAGC 61.151 72.222 0.00 0.00 36.82 4.26
3362 3430 2.305314 ATCCCCTCCTCCCGAGTGAG 62.305 65.000 0.00 4.23 36.82 3.51
3363 3431 2.299727 GATCCCCTCCTCCCGAGTGA 62.300 65.000 0.00 0.00 36.82 3.41
3364 3432 1.834822 GATCCCCTCCTCCCGAGTG 60.835 68.421 0.00 0.00 36.82 3.51
3365 3433 2.014033 GAGATCCCCTCCTCCCGAGT 62.014 65.000 0.00 0.00 36.82 4.18
3366 3434 1.228737 GAGATCCCCTCCTCCCGAG 60.229 68.421 0.00 0.00 38.46 4.63
3367 3435 2.936007 GAGATCCCCTCCTCCCGA 59.064 66.667 0.00 0.00 35.87 5.14
3368 3436 2.598985 CGAGATCCCCTCCTCCCG 60.599 72.222 0.00 0.00 38.71 5.14
3369 3437 2.920384 GCGAGATCCCCTCCTCCC 60.920 72.222 0.00 0.00 38.71 4.30
3370 3438 1.124477 AATGCGAGATCCCCTCCTCC 61.124 60.000 0.00 0.00 38.71 4.30
3371 3439 0.034616 CAATGCGAGATCCCCTCCTC 59.965 60.000 0.00 0.00 38.71 3.71
3372 3440 2.049627 GCAATGCGAGATCCCCTCCT 62.050 60.000 0.00 0.00 38.71 3.69
3373 3441 1.599240 GCAATGCGAGATCCCCTCC 60.599 63.158 0.00 0.00 38.71 4.30
3374 3442 4.055654 GCAATGCGAGATCCCCTC 57.944 61.111 0.00 0.00 38.55 4.30
3424 3492 4.504916 CCTCGAGCAGGGACGCTG 62.505 72.222 14.88 14.88 44.01 5.18
3428 3496 3.708220 CTTCGCCTCGAGCAGGGAC 62.708 68.421 6.99 0.00 43.70 4.46
3429 3497 3.452786 CTTCGCCTCGAGCAGGGA 61.453 66.667 6.99 5.60 43.70 4.20
3430 3498 4.521062 CCTTCGCCTCGAGCAGGG 62.521 72.222 6.99 2.98 43.70 4.45
3435 3503 4.856607 GACCGCCTTCGCCTCGAG 62.857 72.222 5.13 5.13 37.14 4.04
3437 3505 4.436998 AAGACCGCCTTCGCCTCG 62.437 66.667 0.00 0.00 0.00 4.63
3438 3506 2.509561 GAAGACCGCCTTCGCCTC 60.510 66.667 1.01 0.00 41.54 4.70
3443 3511 4.736896 ACGCCGAAGACCGCCTTC 62.737 66.667 0.00 5.91 46.05 3.46
3508 3576 4.681978 AACAGGCCCGACGACTGC 62.682 66.667 0.00 5.11 35.70 4.40
3509 3577 2.432628 GAACAGGCCCGACGACTG 60.433 66.667 0.00 4.52 38.19 3.51
3510 3578 4.052229 CGAACAGGCCCGACGACT 62.052 66.667 0.00 0.00 0.00 4.18
3514 3582 4.754667 GGACCGAACAGGCCCGAC 62.755 72.222 0.00 0.00 46.52 4.79
3526 3594 2.920645 CCAGATCGGATCGGGACCG 61.921 68.421 26.87 3.96 45.99 4.79
3527 3595 2.574955 CCCAGATCGGATCGGGACC 61.575 68.421 30.82 1.70 45.99 4.46
3528 3596 0.900647 ATCCCAGATCGGATCGGGAC 60.901 60.000 33.17 8.60 46.83 4.46
3529 3597 0.612174 GATCCCAGATCGGATCGGGA 60.612 60.000 32.86 32.86 46.73 5.14
3530 3598 1.893786 GATCCCAGATCGGATCGGG 59.106 63.158 27.64 27.64 46.73 5.14
3534 3602 1.533994 TGCGGATCCCAGATCGGAT 60.534 57.895 6.06 2.06 45.72 4.18
3535 3603 2.123468 TGCGGATCCCAGATCGGA 60.123 61.111 6.06 0.00 36.56 4.55
3536 3604 2.341543 CTGCGGATCCCAGATCGG 59.658 66.667 19.95 7.56 32.03 4.18
3537 3605 2.341543 CCTGCGGATCCCAGATCG 59.658 66.667 24.11 7.04 32.03 3.69
3538 3606 2.031768 GCCTGCGGATCCCAGATC 59.968 66.667 24.11 14.84 32.03 2.75
3539 3607 3.933722 CGCCTGCGGATCCCAGAT 61.934 66.667 24.11 0.00 35.56 2.90
3581 3649 2.284258 AACAGAGGAGCCGAGCCT 60.284 61.111 0.00 0.00 38.81 4.58
3582 3650 2.125350 CAACAGAGGAGCCGAGCC 60.125 66.667 0.00 0.00 0.00 4.70
3583 3651 2.817396 GCAACAGAGGAGCCGAGC 60.817 66.667 0.00 0.00 0.00 5.03
3584 3652 2.507992 CGCAACAGAGGAGCCGAG 60.508 66.667 0.00 0.00 0.00 4.63
3585 3653 4.742201 GCGCAACAGAGGAGCCGA 62.742 66.667 0.30 0.00 0.00 5.54
3588 3656 3.482783 GACGCGCAACAGAGGAGC 61.483 66.667 5.73 0.00 0.00 4.70
3589 3657 2.811317 GGACGCGCAACAGAGGAG 60.811 66.667 5.73 0.00 0.00 3.69
3590 3658 3.303135 AGGACGCGCAACAGAGGA 61.303 61.111 5.73 0.00 0.00 3.71
3591 3659 3.114616 CAGGACGCGCAACAGAGG 61.115 66.667 5.73 0.00 0.00 3.69
3592 3660 3.114616 CCAGGACGCGCAACAGAG 61.115 66.667 5.73 0.00 0.00 3.35
3593 3661 3.573772 CTCCAGGACGCGCAACAGA 62.574 63.158 5.73 0.00 0.00 3.41
3594 3662 3.114616 CTCCAGGACGCGCAACAG 61.115 66.667 5.73 0.00 0.00 3.16
3595 3663 4.680237 CCTCCAGGACGCGCAACA 62.680 66.667 5.73 0.00 37.39 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.