Multiple sequence alignment - TraesCS5A01G377400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G377400 chr5A 100.000 4259 0 0 1 4259 574864491 574868749 0.000000e+00 7866
1 TraesCS5A01G377400 chr5B 93.510 3652 186 36 373 4010 558711929 558715543 0.000000e+00 5384
2 TraesCS5A01G377400 chr5B 91.440 257 13 3 4002 4257 558746705 558746953 1.130000e-90 344
3 TraesCS5A01G377400 chr5D 94.125 3302 141 17 659 3945 456826777 456830040 0.000000e+00 4974
4 TraesCS5A01G377400 chr5D 88.782 312 27 4 1 304 488166080 488165769 4.020000e-100 375
5 TraesCS5A01G377400 chr5D 86.879 282 24 9 3983 4251 456830029 456830310 1.920000e-78 303
6 TraesCS5A01G377400 chr7A 89.744 312 24 4 1 304 556382267 556381956 3.990000e-105 392
7 TraesCS5A01G377400 chr7A 88.820 322 27 6 1 314 92365335 92365655 1.860000e-103 387
8 TraesCS5A01G377400 chr4A 88.782 312 27 4 1 304 71082067 71081756 4.020000e-100 375
9 TraesCS5A01G377400 chr4A 88.535 314 28 5 1 306 5422072 5422385 1.450000e-99 374
10 TraesCS5A01G377400 chr6D 88.498 313 29 4 1 306 446421980 446421668 5.200000e-99 372
11 TraesCS5A01G377400 chr2D 88.498 313 28 4 1 305 458302012 458301700 5.200000e-99 372
12 TraesCS5A01G377400 chr2A 88.462 312 27 5 1 305 679280990 679280681 6.730000e-98 368
13 TraesCS5A01G377400 chr4D 87.539 321 30 6 1 312 333679347 333679666 3.130000e-96 363


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G377400 chr5A 574864491 574868749 4258 False 7866.0 7866 100.000 1 4259 1 chr5A.!!$F1 4258
1 TraesCS5A01G377400 chr5B 558711929 558715543 3614 False 5384.0 5384 93.510 373 4010 1 chr5B.!!$F1 3637
2 TraesCS5A01G377400 chr5D 456826777 456830310 3533 False 2638.5 4974 90.502 659 4251 2 chr5D.!!$F1 3592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.104855 CTAACATAGCTGCGCCAGGA 59.895 55.0 4.18 0.00 31.21 3.86 F
256 257 0.107831 TCCTGCTAACACCACACACC 59.892 55.0 0.00 0.00 0.00 4.16 F
1657 1705 0.249238 GCTGGAGGACATGTCTAGCG 60.249 60.0 24.50 11.08 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1779 0.035630 GTGCCTTCATCCTCAGTGCT 60.036 55.0 0.00 0.0 0.00 4.40 R
1821 1869 1.107114 GAGCATCCTCGACTCTTCCA 58.893 55.0 0.00 0.0 0.00 3.53 R
3650 3699 0.740868 TATGCGCCTGTGTTCTCAGC 60.741 55.0 4.18 0.0 34.47 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.966021 TGCTTTTACAACTACACTTCATTCC 58.034 36.000 0.00 0.00 0.00 3.01
26 27 6.077838 GCTTTTACAACTACACTTCATTCCG 58.922 40.000 0.00 0.00 0.00 4.30
27 28 6.548441 TTTTACAACTACACTTCATTCCGG 57.452 37.500 0.00 0.00 0.00 5.14
28 29 5.471556 TTACAACTACACTTCATTCCGGA 57.528 39.130 0.00 0.00 0.00 5.14
29 30 4.553330 ACAACTACACTTCATTCCGGAT 57.447 40.909 4.15 0.00 0.00 4.18
30 31 5.670792 ACAACTACACTTCATTCCGGATA 57.329 39.130 4.15 0.00 0.00 2.59
31 32 6.045072 ACAACTACACTTCATTCCGGATAA 57.955 37.500 4.15 0.00 0.00 1.75
32 33 5.873164 ACAACTACACTTCATTCCGGATAAC 59.127 40.000 4.15 0.00 0.00 1.89
33 34 5.934402 ACTACACTTCATTCCGGATAACT 57.066 39.130 4.15 0.00 0.00 2.24
34 35 7.093640 ACAACTACACTTCATTCCGGATAACTA 60.094 37.037 4.15 0.00 0.00 2.24
35 36 6.803642 ACTACACTTCATTCCGGATAACTAC 58.196 40.000 4.15 0.00 0.00 2.73
36 37 5.670792 ACACTTCATTCCGGATAACTACA 57.329 39.130 4.15 0.00 0.00 2.74
37 38 6.235231 ACACTTCATTCCGGATAACTACAT 57.765 37.500 4.15 0.00 0.00 2.29
38 39 6.281405 ACACTTCATTCCGGATAACTACATC 58.719 40.000 4.15 0.00 0.00 3.06
39 40 6.098409 ACACTTCATTCCGGATAACTACATCT 59.902 38.462 4.15 0.00 0.00 2.90
40 41 6.422100 CACTTCATTCCGGATAACTACATCTG 59.578 42.308 4.15 0.00 0.00 2.90
41 42 4.883083 TCATTCCGGATAACTACATCTGC 58.117 43.478 4.15 0.00 31.05 4.26
42 43 3.746045 TTCCGGATAACTACATCTGCC 57.254 47.619 4.15 0.00 31.05 4.85
43 44 2.673258 TCCGGATAACTACATCTGCCA 58.327 47.619 0.00 0.00 31.05 4.92
44 45 3.035363 TCCGGATAACTACATCTGCCAA 58.965 45.455 0.00 0.00 31.05 4.52
45 46 3.131396 CCGGATAACTACATCTGCCAAC 58.869 50.000 0.00 0.00 31.05 3.77
46 47 3.131396 CGGATAACTACATCTGCCAACC 58.869 50.000 0.00 0.00 0.00 3.77
47 48 3.431626 CGGATAACTACATCTGCCAACCA 60.432 47.826 0.00 0.00 0.00 3.67
48 49 4.130118 GGATAACTACATCTGCCAACCAG 58.870 47.826 0.00 0.00 43.17 4.00
49 50 2.496899 AACTACATCTGCCAACCAGG 57.503 50.000 0.00 0.00 42.05 4.45
50 51 1.656587 ACTACATCTGCCAACCAGGA 58.343 50.000 0.00 0.00 42.05 3.86
51 52 2.200081 ACTACATCTGCCAACCAGGAT 58.800 47.619 0.00 0.00 42.05 3.24
52 53 2.092753 ACTACATCTGCCAACCAGGATG 60.093 50.000 0.00 0.00 42.05 3.51
53 54 0.994247 ACATCTGCCAACCAGGATGA 59.006 50.000 0.00 0.00 42.05 2.92
54 55 1.340405 ACATCTGCCAACCAGGATGAC 60.340 52.381 0.00 0.00 42.05 3.06
55 56 0.994247 ATCTGCCAACCAGGATGACA 59.006 50.000 0.00 0.00 42.05 3.58
56 57 0.770499 TCTGCCAACCAGGATGACAA 59.230 50.000 0.00 0.00 42.05 3.18
57 58 0.883833 CTGCCAACCAGGATGACAAC 59.116 55.000 0.00 0.00 39.69 3.32
58 59 0.478072 TGCCAACCAGGATGACAACT 59.522 50.000 0.00 0.00 39.69 3.16
59 60 1.702401 TGCCAACCAGGATGACAACTA 59.298 47.619 0.00 0.00 39.69 2.24
60 61 2.107378 TGCCAACCAGGATGACAACTAA 59.893 45.455 0.00 0.00 39.69 2.24
61 62 3.153919 GCCAACCAGGATGACAACTAAA 58.846 45.455 0.00 0.00 39.69 1.85
62 63 3.763897 GCCAACCAGGATGACAACTAAAT 59.236 43.478 0.00 0.00 39.69 1.40
63 64 4.220602 GCCAACCAGGATGACAACTAAATT 59.779 41.667 0.00 0.00 39.69 1.82
64 65 5.713025 CCAACCAGGATGACAACTAAATTG 58.287 41.667 0.00 0.00 41.63 2.32
74 75 3.051606 CAACTAAATTGTCATCCCGCG 57.948 47.619 0.00 0.00 33.20 6.46
75 76 1.663695 ACTAAATTGTCATCCCGCGG 58.336 50.000 21.04 21.04 0.00 6.46
76 77 0.944386 CTAAATTGTCATCCCGCGGG 59.056 55.000 39.13 39.13 0.00 6.13
77 78 0.464735 TAAATTGTCATCCCGCGGGG 60.465 55.000 42.36 28.14 46.11 5.73
78 79 2.493273 AAATTGTCATCCCGCGGGGT 62.493 55.000 42.36 36.42 44.74 4.95
79 80 1.628238 AATTGTCATCCCGCGGGGTA 61.628 55.000 42.36 26.63 44.74 3.69
80 81 2.319890 ATTGTCATCCCGCGGGGTAC 62.320 60.000 42.36 33.56 44.74 3.34
95 96 1.499049 GGTACCTAACATAGCTGCGC 58.501 55.000 4.06 0.00 0.00 6.09
96 97 1.499049 GTACCTAACATAGCTGCGCC 58.501 55.000 4.18 0.00 0.00 6.53
97 98 1.116308 TACCTAACATAGCTGCGCCA 58.884 50.000 4.18 0.00 0.00 5.69
98 99 0.179073 ACCTAACATAGCTGCGCCAG 60.179 55.000 4.18 3.40 34.12 4.85
99 100 0.882042 CCTAACATAGCTGCGCCAGG 60.882 60.000 4.18 0.00 31.21 4.45
100 101 0.104855 CTAACATAGCTGCGCCAGGA 59.895 55.000 4.18 0.00 31.21 3.86
101 102 0.179084 TAACATAGCTGCGCCAGGAC 60.179 55.000 4.18 0.00 31.21 3.85
102 103 2.184020 AACATAGCTGCGCCAGGACA 62.184 55.000 4.18 0.00 31.21 4.02
103 104 1.227764 CATAGCTGCGCCAGGACAT 60.228 57.895 4.18 0.00 31.21 3.06
104 105 1.227764 ATAGCTGCGCCAGGACATG 60.228 57.895 4.18 0.00 31.21 3.21
105 106 1.976132 ATAGCTGCGCCAGGACATGT 61.976 55.000 4.18 0.00 31.21 3.21
106 107 2.857575 TAGCTGCGCCAGGACATGTG 62.858 60.000 1.15 0.00 31.21 3.21
107 108 3.129502 CTGCGCCAGGACATGTGG 61.130 66.667 1.15 0.00 38.21 4.17
117 118 1.441738 GGACATGTGGCCATTTTTGC 58.558 50.000 9.72 0.00 44.76 3.68
118 119 1.002315 GGACATGTGGCCATTTTTGCT 59.998 47.619 9.72 0.00 44.76 3.91
119 120 2.550639 GGACATGTGGCCATTTTTGCTT 60.551 45.455 9.72 0.00 44.76 3.91
120 121 2.738314 GACATGTGGCCATTTTTGCTTC 59.262 45.455 9.72 0.00 0.00 3.86
121 122 1.727880 CATGTGGCCATTTTTGCTTCG 59.272 47.619 9.72 0.00 0.00 3.79
122 123 0.749649 TGTGGCCATTTTTGCTTCGT 59.250 45.000 9.72 0.00 0.00 3.85
123 124 1.139163 GTGGCCATTTTTGCTTCGTG 58.861 50.000 9.72 0.00 0.00 4.35
124 125 0.749649 TGGCCATTTTTGCTTCGTGT 59.250 45.000 0.00 0.00 0.00 4.49
125 126 1.269517 TGGCCATTTTTGCTTCGTGTC 60.270 47.619 0.00 0.00 0.00 3.67
126 127 1.269517 GGCCATTTTTGCTTCGTGTCA 60.270 47.619 0.00 0.00 0.00 3.58
127 128 1.786579 GCCATTTTTGCTTCGTGTCAC 59.213 47.619 0.00 0.00 0.00 3.67
128 129 2.797792 GCCATTTTTGCTTCGTGTCACA 60.798 45.455 3.42 0.00 0.00 3.58
129 130 2.788786 CCATTTTTGCTTCGTGTCACAC 59.211 45.455 0.00 0.00 0.00 3.82
130 131 3.433709 CATTTTTGCTTCGTGTCACACA 58.566 40.909 9.06 0.00 33.40 3.72
131 132 2.535934 TTTTGCTTCGTGTCACACAC 57.464 45.000 9.06 2.95 45.26 3.82
146 147 4.794439 CACGCGCGGTGGAGATGA 62.794 66.667 35.22 0.00 43.16 2.92
147 148 4.498520 ACGCGCGGTGGAGATGAG 62.499 66.667 35.22 1.22 0.00 2.90
148 149 4.498520 CGCGCGGTGGAGATGAGT 62.499 66.667 24.84 0.00 0.00 3.41
149 150 2.805546 GCGCGGTGGAGATGAGTA 59.194 61.111 8.83 0.00 0.00 2.59
150 151 1.299468 GCGCGGTGGAGATGAGTAG 60.299 63.158 8.83 0.00 0.00 2.57
151 152 2.005960 GCGCGGTGGAGATGAGTAGT 62.006 60.000 8.83 0.00 0.00 2.73
152 153 1.306148 CGCGGTGGAGATGAGTAGTA 58.694 55.000 0.00 0.00 0.00 1.82
153 154 1.880675 CGCGGTGGAGATGAGTAGTAT 59.119 52.381 0.00 0.00 0.00 2.12
154 155 2.293677 CGCGGTGGAGATGAGTAGTATT 59.706 50.000 0.00 0.00 0.00 1.89
155 156 3.243434 CGCGGTGGAGATGAGTAGTATTT 60.243 47.826 0.00 0.00 0.00 1.40
156 157 4.051922 GCGGTGGAGATGAGTAGTATTTG 58.948 47.826 0.00 0.00 0.00 2.32
157 158 4.441634 GCGGTGGAGATGAGTAGTATTTGT 60.442 45.833 0.00 0.00 0.00 2.83
158 159 5.661458 CGGTGGAGATGAGTAGTATTTGTT 58.339 41.667 0.00 0.00 0.00 2.83
159 160 5.520288 CGGTGGAGATGAGTAGTATTTGTTG 59.480 44.000 0.00 0.00 0.00 3.33
160 161 6.627287 CGGTGGAGATGAGTAGTATTTGTTGA 60.627 42.308 0.00 0.00 0.00 3.18
161 162 7.103641 GGTGGAGATGAGTAGTATTTGTTGAA 58.896 38.462 0.00 0.00 0.00 2.69
162 163 7.064728 GGTGGAGATGAGTAGTATTTGTTGAAC 59.935 40.741 0.00 0.00 0.00 3.18
163 164 7.602644 GTGGAGATGAGTAGTATTTGTTGAACA 59.397 37.037 0.00 0.00 0.00 3.18
164 165 8.321353 TGGAGATGAGTAGTATTTGTTGAACAT 58.679 33.333 0.00 0.00 0.00 2.71
165 166 8.607459 GGAGATGAGTAGTATTTGTTGAACATG 58.393 37.037 0.00 0.00 0.00 3.21
166 167 9.155975 GAGATGAGTAGTATTTGTTGAACATGT 57.844 33.333 0.00 0.00 0.00 3.21
167 168 8.939929 AGATGAGTAGTATTTGTTGAACATGTG 58.060 33.333 0.00 0.00 0.00 3.21
168 169 8.846943 ATGAGTAGTATTTGTTGAACATGTGA 57.153 30.769 0.00 0.00 0.00 3.58
169 170 8.083462 TGAGTAGTATTTGTTGAACATGTGAC 57.917 34.615 0.00 0.00 0.00 3.67
170 171 7.713073 TGAGTAGTATTTGTTGAACATGTGACA 59.287 33.333 0.00 2.27 0.00 3.58
171 172 7.861630 AGTAGTATTTGTTGAACATGTGACAC 58.138 34.615 0.00 0.00 0.00 3.67
172 173 5.747565 AGTATTTGTTGAACATGTGACACG 58.252 37.500 0.00 0.00 0.00 4.49
173 174 4.891627 ATTTGTTGAACATGTGACACGA 57.108 36.364 0.00 0.00 0.00 4.35
174 175 4.686839 TTTGTTGAACATGTGACACGAA 57.313 36.364 0.00 0.00 0.00 3.85
175 176 3.942539 TGTTGAACATGTGACACGAAG 57.057 42.857 0.00 0.00 0.00 3.79
177 178 4.434520 TGTTGAACATGTGACACGAAGTA 58.565 39.130 0.00 0.00 41.61 2.24
178 179 4.870991 TGTTGAACATGTGACACGAAGTAA 59.129 37.500 0.00 0.00 41.61 2.24
179 180 5.195379 GTTGAACATGTGACACGAAGTAAC 58.805 41.667 0.00 0.00 41.61 2.50
180 181 3.805422 TGAACATGTGACACGAAGTAACC 59.195 43.478 0.00 0.00 41.61 2.85
181 182 2.400399 ACATGTGACACGAAGTAACCG 58.600 47.619 0.00 0.00 41.61 4.44
182 183 1.126113 CATGTGACACGAAGTAACCGC 59.874 52.381 0.22 0.00 41.61 5.68
183 184 0.935831 TGTGACACGAAGTAACCGCG 60.936 55.000 0.00 0.00 41.61 6.46
184 185 2.017783 TGACACGAAGTAACCGCGC 61.018 57.895 0.00 0.00 41.61 6.86
185 186 2.723719 GACACGAAGTAACCGCGCC 61.724 63.158 0.00 0.00 41.61 6.53
186 187 3.484547 CACGAAGTAACCGCGCCC 61.485 66.667 0.00 0.00 41.61 6.13
187 188 3.993584 ACGAAGTAACCGCGCCCA 61.994 61.111 0.00 0.00 41.94 5.36
188 189 3.484547 CGAAGTAACCGCGCCCAC 61.485 66.667 0.00 0.00 0.00 4.61
189 190 2.357760 GAAGTAACCGCGCCCACA 60.358 61.111 0.00 0.00 0.00 4.17
190 191 1.743995 GAAGTAACCGCGCCCACAT 60.744 57.895 0.00 0.00 0.00 3.21
191 192 1.977594 GAAGTAACCGCGCCCACATG 61.978 60.000 0.00 0.00 0.00 3.21
192 193 2.741486 AAGTAACCGCGCCCACATGT 62.741 55.000 0.00 0.00 0.00 3.21
193 194 2.744318 TAACCGCGCCCACATGTG 60.744 61.111 19.31 19.31 0.00 3.21
194 195 3.538785 TAACCGCGCCCACATGTGT 62.539 57.895 23.79 5.86 0.00 3.72
207 208 4.724074 CACATGTGTGGGCAATTCTAAT 57.276 40.909 18.03 0.00 42.10 1.73
208 209 4.426416 CACATGTGTGGGCAATTCTAATG 58.574 43.478 18.03 0.00 42.10 1.90
209 210 4.082081 CACATGTGTGGGCAATTCTAATGT 60.082 41.667 18.03 0.00 42.10 2.71
210 211 4.158394 ACATGTGTGGGCAATTCTAATGTC 59.842 41.667 0.00 0.00 0.00 3.06
211 212 4.032960 TGTGTGGGCAATTCTAATGTCT 57.967 40.909 0.00 0.00 0.00 3.41
212 213 3.758023 TGTGTGGGCAATTCTAATGTCTG 59.242 43.478 0.00 0.00 0.00 3.51
213 214 2.754552 TGTGGGCAATTCTAATGTCTGC 59.245 45.455 0.00 0.00 0.00 4.26
216 217 2.378038 GGCAATTCTAATGTCTGCCCA 58.622 47.619 5.83 0.00 45.60 5.36
217 218 2.099756 GGCAATTCTAATGTCTGCCCAC 59.900 50.000 5.83 0.00 45.60 4.61
218 219 2.754552 GCAATTCTAATGTCTGCCCACA 59.245 45.455 0.00 0.00 0.00 4.17
219 220 3.428045 GCAATTCTAATGTCTGCCCACAC 60.428 47.826 0.00 0.00 0.00 3.82
220 221 3.719268 ATTCTAATGTCTGCCCACACA 57.281 42.857 0.00 0.00 0.00 3.72
221 222 3.500448 TTCTAATGTCTGCCCACACAA 57.500 42.857 0.00 0.00 0.00 3.33
222 223 3.719268 TCTAATGTCTGCCCACACAAT 57.281 42.857 0.00 0.00 0.00 2.71
223 224 3.609853 TCTAATGTCTGCCCACACAATC 58.390 45.455 0.00 0.00 0.00 2.67
224 225 1.549203 AATGTCTGCCCACACAATCC 58.451 50.000 0.00 0.00 0.00 3.01
225 226 0.677731 ATGTCTGCCCACACAATCCG 60.678 55.000 0.00 0.00 0.00 4.18
226 227 1.302511 GTCTGCCCACACAATCCGT 60.303 57.895 0.00 0.00 0.00 4.69
236 237 3.637184 ACAATCCGTGTGGGTTACC 57.363 52.632 0.00 0.00 36.01 2.85
237 238 1.061546 ACAATCCGTGTGGGTTACCT 58.938 50.000 0.00 0.00 36.01 3.08
238 239 1.002773 ACAATCCGTGTGGGTTACCTC 59.997 52.381 0.00 0.00 36.01 3.85
239 240 0.616891 AATCCGTGTGGGTTACCTCC 59.383 55.000 0.00 0.00 36.59 4.30
240 241 0.252558 ATCCGTGTGGGTTACCTCCT 60.253 55.000 0.00 0.00 37.76 3.69
241 242 1.189524 TCCGTGTGGGTTACCTCCTG 61.190 60.000 0.00 0.00 37.76 3.86
242 243 1.375523 CGTGTGGGTTACCTCCTGC 60.376 63.158 0.00 0.00 37.76 4.85
243 244 1.827399 CGTGTGGGTTACCTCCTGCT 61.827 60.000 0.00 0.00 37.76 4.24
244 245 1.272807 GTGTGGGTTACCTCCTGCTA 58.727 55.000 0.00 0.00 37.76 3.49
245 246 1.626825 GTGTGGGTTACCTCCTGCTAA 59.373 52.381 0.00 0.00 37.76 3.09
246 247 1.626825 TGTGGGTTACCTCCTGCTAAC 59.373 52.381 0.00 0.00 37.76 2.34
247 248 1.626825 GTGGGTTACCTCCTGCTAACA 59.373 52.381 0.00 0.00 37.76 2.41
248 249 1.626825 TGGGTTACCTCCTGCTAACAC 59.373 52.381 0.00 0.00 37.76 3.32
249 250 1.065636 GGGTTACCTCCTGCTAACACC 60.066 57.143 0.00 0.00 0.00 4.16
250 251 1.626825 GGTTACCTCCTGCTAACACCA 59.373 52.381 0.00 0.00 0.00 4.17
251 252 2.614734 GGTTACCTCCTGCTAACACCAC 60.615 54.545 0.00 0.00 0.00 4.16
252 253 2.018355 TACCTCCTGCTAACACCACA 57.982 50.000 0.00 0.00 0.00 4.17
253 254 0.396811 ACCTCCTGCTAACACCACAC 59.603 55.000 0.00 0.00 0.00 3.82
254 255 0.396435 CCTCCTGCTAACACCACACA 59.604 55.000 0.00 0.00 0.00 3.72
255 256 1.512926 CTCCTGCTAACACCACACAC 58.487 55.000 0.00 0.00 0.00 3.82
256 257 0.107831 TCCTGCTAACACCACACACC 59.892 55.000 0.00 0.00 0.00 4.16
257 258 1.227999 CCTGCTAACACCACACACCG 61.228 60.000 0.00 0.00 0.00 4.94
258 259 0.531974 CTGCTAACACCACACACCGT 60.532 55.000 0.00 0.00 0.00 4.83
259 260 0.812014 TGCTAACACCACACACCGTG 60.812 55.000 0.00 0.00 45.92 4.94
268 269 3.648982 CACACCGTGTGCGCATGT 61.649 61.111 15.91 11.14 41.89 3.21
269 270 3.345808 ACACCGTGTGCGCATGTC 61.346 61.111 15.91 0.09 36.98 3.06
270 271 4.428922 CACCGTGTGCGCATGTCG 62.429 66.667 15.91 18.20 42.12 4.35
271 272 4.656117 ACCGTGTGCGCATGTCGA 62.656 61.111 24.91 3.28 41.67 4.20
272 273 3.410516 CCGTGTGCGCATGTCGAA 61.411 61.111 24.91 0.20 41.67 3.71
273 274 2.739704 CCGTGTGCGCATGTCGAAT 61.740 57.895 24.91 0.00 41.67 3.34
274 275 1.417577 CCGTGTGCGCATGTCGAATA 61.418 55.000 24.91 0.00 41.67 1.75
275 276 0.576798 CGTGTGCGCATGTCGAATAT 59.423 50.000 15.91 0.00 41.67 1.28
276 277 1.784283 CGTGTGCGCATGTCGAATATA 59.216 47.619 15.91 0.00 41.67 0.86
277 278 2.408487 CGTGTGCGCATGTCGAATATAC 60.408 50.000 15.91 0.00 41.67 1.47
278 279 2.096909 GTGTGCGCATGTCGAATATACC 60.097 50.000 15.91 0.00 41.67 2.73
279 280 2.131972 GTGCGCATGTCGAATATACCA 58.868 47.619 15.91 0.00 41.67 3.25
280 281 2.096909 GTGCGCATGTCGAATATACCAC 60.097 50.000 15.91 6.22 41.67 4.16
281 282 2.131972 GCGCATGTCGAATATACCACA 58.868 47.619 0.30 0.00 41.67 4.17
282 283 2.736721 GCGCATGTCGAATATACCACAT 59.263 45.455 0.30 0.00 41.67 3.21
283 284 3.924073 GCGCATGTCGAATATACCACATA 59.076 43.478 0.30 0.00 41.67 2.29
284 285 4.566759 GCGCATGTCGAATATACCACATAT 59.433 41.667 0.30 0.00 41.67 1.78
285 286 5.500771 GCGCATGTCGAATATACCACATATG 60.501 44.000 0.30 0.00 41.67 1.78
286 287 5.576774 CGCATGTCGAATATACCACATATGT 59.423 40.000 1.41 1.41 41.67 2.29
287 288 6.454186 CGCATGTCGAATATACCACATATGTG 60.454 42.308 26.02 26.02 42.34 3.21
299 300 2.224079 CACATATGTGGCAGTTATCGGC 59.776 50.000 25.41 0.00 42.10 5.54
300 301 1.460743 CATATGTGGCAGTTATCGGCG 59.539 52.381 0.00 0.00 35.70 6.46
301 302 0.462375 TATGTGGCAGTTATCGGCGT 59.538 50.000 6.85 0.00 35.70 5.68
302 303 0.810031 ATGTGGCAGTTATCGGCGTC 60.810 55.000 6.85 0.00 35.70 5.19
303 304 2.171725 GTGGCAGTTATCGGCGTCC 61.172 63.158 6.85 0.00 35.70 4.79
304 305 2.185867 GGCAGTTATCGGCGTCCA 59.814 61.111 6.85 0.00 35.70 4.02
305 306 1.227556 GGCAGTTATCGGCGTCCAT 60.228 57.895 6.85 0.00 35.70 3.41
306 307 1.222115 GGCAGTTATCGGCGTCCATC 61.222 60.000 6.85 0.00 35.70 3.51
307 308 1.222115 GCAGTTATCGGCGTCCATCC 61.222 60.000 6.85 0.00 0.00 3.51
308 309 0.389391 CAGTTATCGGCGTCCATCCT 59.611 55.000 6.85 0.00 0.00 3.24
309 310 1.120530 AGTTATCGGCGTCCATCCTT 58.879 50.000 6.85 0.00 0.00 3.36
310 311 1.485066 AGTTATCGGCGTCCATCCTTT 59.515 47.619 6.85 0.00 0.00 3.11
311 312 2.093128 AGTTATCGGCGTCCATCCTTTT 60.093 45.455 6.85 0.00 0.00 2.27
312 313 3.133362 AGTTATCGGCGTCCATCCTTTTA 59.867 43.478 6.85 0.00 0.00 1.52
313 314 2.702592 ATCGGCGTCCATCCTTTTAA 57.297 45.000 6.85 0.00 0.00 1.52
314 315 2.702592 TCGGCGTCCATCCTTTTAAT 57.297 45.000 6.85 0.00 0.00 1.40
315 316 2.285083 TCGGCGTCCATCCTTTTAATG 58.715 47.619 6.85 0.00 0.00 1.90
316 317 1.268539 CGGCGTCCATCCTTTTAATGC 60.269 52.381 0.00 0.00 0.00 3.56
317 318 2.024414 GGCGTCCATCCTTTTAATGCT 58.976 47.619 0.00 0.00 0.00 3.79
318 319 2.033424 GGCGTCCATCCTTTTAATGCTC 59.967 50.000 0.00 0.00 0.00 4.26
319 320 2.945668 GCGTCCATCCTTTTAATGCTCT 59.054 45.455 0.00 0.00 0.00 4.09
320 321 4.127171 GCGTCCATCCTTTTAATGCTCTA 58.873 43.478 0.00 0.00 0.00 2.43
321 322 4.757149 GCGTCCATCCTTTTAATGCTCTAT 59.243 41.667 0.00 0.00 0.00 1.98
322 323 5.239525 GCGTCCATCCTTTTAATGCTCTATT 59.760 40.000 0.00 0.00 0.00 1.73
323 324 6.238759 GCGTCCATCCTTTTAATGCTCTATTT 60.239 38.462 0.00 0.00 0.00 1.40
324 325 7.682021 GCGTCCATCCTTTTAATGCTCTATTTT 60.682 37.037 0.00 0.00 0.00 1.82
325 326 8.836413 CGTCCATCCTTTTAATGCTCTATTTTA 58.164 33.333 0.00 0.00 0.00 1.52
403 404 2.764010 TCACTAGTATCACAACCGGCAT 59.236 45.455 0.00 0.00 0.00 4.40
407 408 1.277842 AGTATCACAACCGGCATGACA 59.722 47.619 14.28 0.00 0.00 3.58
417 418 0.387622 CGGCATGACACAAAGCCTTG 60.388 55.000 0.00 0.00 44.85 3.61
418 419 0.961019 GGCATGACACAAAGCCTTGA 59.039 50.000 1.09 0.00 43.70 3.02
420 421 2.028748 GGCATGACACAAAGCCTTGATT 60.029 45.455 1.09 0.00 43.70 2.57
533 553 3.561310 TCGACATATGAAATGCTTCCTGC 59.439 43.478 10.38 0.00 43.25 4.85
629 650 6.846283 CGATTGCTTAGACCGTGATATTTTTC 59.154 38.462 0.00 0.00 0.00 2.29
630 651 7.465379 CGATTGCTTAGACCGTGATATTTTTCA 60.465 37.037 0.00 0.00 0.00 2.69
631 652 7.624360 TTGCTTAGACCGTGATATTTTTCAT 57.376 32.000 0.00 0.00 0.00 2.57
632 653 8.725405 TTGCTTAGACCGTGATATTTTTCATA 57.275 30.769 0.00 0.00 0.00 2.15
633 654 8.138365 TGCTTAGACCGTGATATTTTTCATAC 57.862 34.615 0.00 0.00 0.00 2.39
667 688 5.351465 ACGACATTGCATATTTCTTTCGACT 59.649 36.000 0.00 0.00 0.00 4.18
673 694 4.154015 TGCATATTTCTTTCGACTGTGGTG 59.846 41.667 0.00 0.00 0.00 4.17
676 697 4.552166 ATTTCTTTCGACTGTGGTGTTG 57.448 40.909 0.00 0.00 0.00 3.33
741 763 0.453390 GGTAACGGTAGACAGGACGG 59.547 60.000 0.00 0.00 0.00 4.79
743 765 1.315257 TAACGGTAGACAGGACGGGC 61.315 60.000 0.00 0.00 0.00 6.13
744 766 3.834799 CGGTAGACAGGACGGGCC 61.835 72.222 0.00 0.00 0.00 5.80
745 767 3.468140 GGTAGACAGGACGGGCCC 61.468 72.222 13.57 13.57 37.37 5.80
746 768 2.363925 GTAGACAGGACGGGCCCT 60.364 66.667 22.43 6.87 37.37 5.19
747 769 2.043248 TAGACAGGACGGGCCCTC 60.043 66.667 22.43 16.12 37.37 4.30
1126 1174 4.722700 GGTGGCCACGCATCAGGT 62.723 66.667 29.08 0.00 0.00 4.00
1284 1332 3.155167 ATCCGGAAGCTCGGGACC 61.155 66.667 9.01 0.00 46.55 4.46
1372 1420 2.964925 GCGTGGTGCAGTCGTTCA 60.965 61.111 0.00 0.00 45.45 3.18
1425 1473 2.003301 GATGCCTTCGACTTGGTTCTC 58.997 52.381 0.00 0.00 0.00 2.87
1533 1581 2.386661 TCAAGCTCCTTGAATCCGTC 57.613 50.000 5.26 0.00 45.84 4.79
1536 1584 3.119101 TCAAGCTCCTTGAATCCGTCTAC 60.119 47.826 5.26 0.00 45.84 2.59
1552 1600 2.364324 GTCTACACGGAGATGGGCAATA 59.636 50.000 0.00 0.00 0.00 1.90
1557 1605 1.075659 GGAGATGGGCAATAGGGGC 59.924 63.158 0.00 0.00 0.00 5.80
1587 1635 4.188462 CTGACCTTGTCACTTACAACACA 58.812 43.478 0.00 0.00 43.22 3.72
1606 1654 2.031769 ACAGTGATCAATGCGTTGTGTG 60.032 45.455 22.33 11.32 36.69 3.82
1633 1681 3.055819 TCATCAGGTTAGGACTGCAGTTC 60.056 47.826 22.65 20.35 35.94 3.01
1657 1705 0.249238 GCTGGAGGACATGTCTAGCG 60.249 60.000 24.50 11.08 0.00 4.26
1659 1707 1.959985 CTGGAGGACATGTCTAGCGAT 59.040 52.381 24.50 5.07 0.00 4.58
1668 1716 1.878522 GTCTAGCGATGGTGTGGCG 60.879 63.158 0.00 0.00 36.56 5.69
1672 1720 4.830765 GCGATGGTGTGGCGCCTA 62.831 66.667 29.70 14.39 44.55 3.93
1710 1758 3.518634 ACGTTGATGCAAGGTTTTGTT 57.481 38.095 0.00 0.00 38.99 2.83
1731 1779 3.157252 GAGGGGAGCATCGAGGCA 61.157 66.667 25.38 0.00 34.37 4.75
1770 1818 2.239654 ACGGATGTCAGAAATGGGATGT 59.760 45.455 0.00 0.00 0.00 3.06
1821 1869 2.554370 TTAACGGGTACTGCAAGCTT 57.446 45.000 0.00 0.00 39.14 3.74
1833 1881 1.074752 GCAAGCTTGGAAGAGTCGAG 58.925 55.000 27.10 0.00 0.00 4.04
1863 1911 6.800543 TCTCAGTTATGTACAGCAAGAGATC 58.199 40.000 0.33 0.00 0.00 2.75
2043 2091 6.713762 TTGTGTCAAATTGGAGAACTTGAT 57.286 33.333 0.00 0.00 30.96 2.57
2050 2098 2.775911 TGGAGAACTTGATGAGGCTG 57.224 50.000 0.00 0.00 0.00 4.85
2051 2099 1.980765 TGGAGAACTTGATGAGGCTGT 59.019 47.619 0.00 0.00 0.00 4.40
2056 2104 0.111061 ACTTGATGAGGCTGTGGCAA 59.889 50.000 0.00 0.00 40.87 4.52
2095 2143 0.179043 TAGCGGTTGTTTGCCTGACA 60.179 50.000 0.00 0.00 0.00 3.58
2125 2173 4.946157 CCTTCAATACTCTCATTGTTGCCT 59.054 41.667 0.00 0.00 37.23 4.75
2452 2500 9.683069 CTATAATTGATGGGTTATGCAAGAAAC 57.317 33.333 0.00 0.00 0.00 2.78
2705 2753 5.933790 TGATGTTTTACAAACTATGACCGC 58.066 37.500 1.33 0.00 0.00 5.68
2883 2931 3.553828 TTTAGAGGGAATAACGGCAGG 57.446 47.619 0.00 0.00 0.00 4.85
2922 2970 1.280421 AGGGAGATGACAGAAGTTGGC 59.720 52.381 0.00 0.00 34.37 4.52
3270 3318 7.278646 TGGACTTATCGATGAAACATGAGAAAG 59.721 37.037 8.54 1.41 0.00 2.62
3273 3321 9.307121 ACTTATCGATGAAACATGAGAAAGTAG 57.693 33.333 8.54 0.00 0.00 2.57
3274 3322 9.307121 CTTATCGATGAAACATGAGAAAGTAGT 57.693 33.333 8.54 0.00 0.00 2.73
3296 3344 4.985538 ATCTGGGAAAGTACTGAGTACG 57.014 45.455 16.30 1.64 43.05 3.67
3299 3347 3.489355 TGGGAAAGTACTGAGTACGTGA 58.511 45.455 16.30 0.00 43.05 4.35
3383 3432 3.139397 TGTTACTTGGTGGGGATGAACTT 59.861 43.478 0.00 0.00 0.00 2.66
3384 3433 4.149598 GTTACTTGGTGGGGATGAACTTT 58.850 43.478 0.00 0.00 0.00 2.66
3421 3470 5.064707 TGCTTATCTTGGTATTGAAACTCGC 59.935 40.000 0.00 0.00 0.00 5.03
3508 3557 4.989279 AATGTCAGATTATTTTGCCGCT 57.011 36.364 0.00 0.00 0.00 5.52
3522 3571 3.347958 TGCCGCTTTTTCAACTAAGTG 57.652 42.857 0.00 0.00 0.00 3.16
3526 3575 3.966218 CCGCTTTTTCAACTAAGTGTTCG 59.034 43.478 0.00 0.00 36.63 3.95
3551 3600 9.995379 CGTTTATCATTCTATTATGTCTTCACG 57.005 33.333 0.00 0.00 0.00 4.35
3582 3631 9.727859 TATGTTTTTCATACTGGTTACAGCTAA 57.272 29.630 0.00 0.00 41.68 3.09
3599 3648 3.571401 AGCTAAAAATGTCAGCAGCAACT 59.429 39.130 0.00 0.00 37.78 3.16
3613 3662 9.314321 GTCAGCAGCAACTTATATTCTAACTAA 57.686 33.333 0.00 0.00 0.00 2.24
3648 3697 2.358957 CCGCATCTCTTTCCATGAACA 58.641 47.619 0.00 0.00 0.00 3.18
3650 3699 2.353889 CGCATCTCTTTCCATGAACAGG 59.646 50.000 0.00 0.00 0.00 4.00
3653 3702 3.063510 TCTCTTTCCATGAACAGGCTG 57.936 47.619 14.16 14.16 0.00 4.85
3667 3716 2.666190 GCTGAGAACACAGGCGCA 60.666 61.111 10.83 0.00 38.22 6.09
3773 3822 4.290155 CCAAGTTGAGCAATGTTGTACAC 58.710 43.478 3.87 0.00 0.00 2.90
3941 3990 3.096092 GGCCATGGATTCCTAACAAACA 58.904 45.455 18.40 0.00 0.00 2.83
3984 4033 6.094881 GGCTGTAAAGGAATACTGCAACATAA 59.905 38.462 15.12 0.00 46.48 1.90
3985 4034 6.967199 GCTGTAAAGGAATACTGCAACATAAC 59.033 38.462 10.27 0.00 45.01 1.89
4049 4098 6.029346 AGGAAACTTAGAATGCCACATTTG 57.971 37.500 0.00 0.00 37.44 2.32
4050 4099 4.627035 GGAAACTTAGAATGCCACATTTGC 59.373 41.667 0.00 0.00 0.00 3.68
4052 4101 3.164268 ACTTAGAATGCCACATTTGCCA 58.836 40.909 0.00 0.00 0.00 4.92
4106 4156 5.757320 CCATGTTACTGGAAATTGTTTGCAA 59.243 36.000 0.00 0.00 40.53 4.08
4114 4164 8.532977 ACTGGAAATTGTTTGCAATATGTAAC 57.467 30.769 0.00 0.00 43.89 2.50
4121 4171 6.307031 TGTTTGCAATATGTAACGTCTGTT 57.693 33.333 0.00 0.00 42.19 3.16
4172 4222 1.450312 CTAGCGAGCACCCCAAAGG 60.450 63.158 0.00 0.00 43.78 3.11
4173 4223 3.622060 TAGCGAGCACCCCAAAGGC 62.622 63.158 0.00 0.00 40.58 4.35
4176 4226 4.299796 GAGCACCCCAAAGGCCCA 62.300 66.667 0.00 0.00 40.58 5.36
4177 4227 3.826265 GAGCACCCCAAAGGCCCAA 62.826 63.158 0.00 0.00 40.58 4.12
4178 4228 2.846754 GCACCCCAAAGGCCCAAA 60.847 61.111 0.00 0.00 40.58 3.28
4179 4229 3.147132 CACCCCAAAGGCCCAAAC 58.853 61.111 0.00 0.00 40.58 2.93
4181 4231 1.126948 CACCCCAAAGGCCCAAACAT 61.127 55.000 0.00 0.00 40.58 2.71
4182 4232 0.835971 ACCCCAAAGGCCCAAACATC 60.836 55.000 0.00 0.00 40.58 3.06
4196 4251 5.626809 GCCCAAACATCTTTTAATCCTTCCC 60.627 44.000 0.00 0.00 0.00 3.97
4200 4255 5.693769 ACATCTTTTAATCCTTCCCGAGA 57.306 39.130 0.00 0.00 0.00 4.04
4201 4256 5.429130 ACATCTTTTAATCCTTCCCGAGAC 58.571 41.667 0.00 0.00 0.00 3.36
4209 4264 5.896073 AATCCTTCCCGAGACAGATAATT 57.104 39.130 0.00 0.00 0.00 1.40
4210 4265 4.939052 TCCTTCCCGAGACAGATAATTC 57.061 45.455 0.00 0.00 0.00 2.17
4214 4276 6.015350 TCCTTCCCGAGACAGATAATTCATAC 60.015 42.308 0.00 0.00 0.00 2.39
4232 4294 6.801539 TCATACGGATAGAATTGGAAATGC 57.198 37.500 0.00 0.00 0.00 3.56
4235 4297 4.780815 ACGGATAGAATTGGAAATGCAGA 58.219 39.130 0.00 0.00 0.00 4.26
4241 4303 5.741388 AGAATTGGAAATGCAGATACGTC 57.259 39.130 0.00 0.00 0.00 4.34
4245 4307 2.677836 TGGAAATGCAGATACGTCTTGC 59.322 45.455 10.78 10.78 30.42 4.01
4251 4313 1.404181 GCAGATACGTCTTGCCTGTCA 60.404 52.381 0.00 0.00 30.42 3.58
4252 4314 2.930887 GCAGATACGTCTTGCCTGTCAA 60.931 50.000 0.00 0.00 30.42 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.573096 CGGAATGAAGTGTAGTTGTAAAAGCAT 60.573 37.037 0.00 0.00 0.00 3.79
1 2 6.293190 CGGAATGAAGTGTAGTTGTAAAAGCA 60.293 38.462 0.00 0.00 0.00 3.91
2 3 6.077838 CGGAATGAAGTGTAGTTGTAAAAGC 58.922 40.000 0.00 0.00 0.00 3.51
3 4 6.425721 TCCGGAATGAAGTGTAGTTGTAAAAG 59.574 38.462 0.00 0.00 0.00 2.27
4 5 6.289834 TCCGGAATGAAGTGTAGTTGTAAAA 58.710 36.000 0.00 0.00 0.00 1.52
5 6 5.856156 TCCGGAATGAAGTGTAGTTGTAAA 58.144 37.500 0.00 0.00 0.00 2.01
6 7 5.471556 TCCGGAATGAAGTGTAGTTGTAA 57.528 39.130 0.00 0.00 0.00 2.41
7 8 5.670792 ATCCGGAATGAAGTGTAGTTGTA 57.329 39.130 9.01 0.00 0.00 2.41
8 9 4.553330 ATCCGGAATGAAGTGTAGTTGT 57.447 40.909 9.01 0.00 0.00 3.32
9 10 6.106673 AGTTATCCGGAATGAAGTGTAGTTG 58.893 40.000 9.01 0.00 0.00 3.16
10 11 6.295719 AGTTATCCGGAATGAAGTGTAGTT 57.704 37.500 9.01 0.00 0.00 2.24
11 12 5.934402 AGTTATCCGGAATGAAGTGTAGT 57.066 39.130 9.01 0.00 0.00 2.73
12 13 6.802608 TGTAGTTATCCGGAATGAAGTGTAG 58.197 40.000 9.01 0.00 0.00 2.74
13 14 6.778834 TGTAGTTATCCGGAATGAAGTGTA 57.221 37.500 9.01 0.00 0.00 2.90
14 15 5.670792 TGTAGTTATCCGGAATGAAGTGT 57.329 39.130 9.01 0.00 0.00 3.55
15 16 6.422100 CAGATGTAGTTATCCGGAATGAAGTG 59.578 42.308 9.01 0.00 0.00 3.16
16 17 6.516718 CAGATGTAGTTATCCGGAATGAAGT 58.483 40.000 9.01 8.92 0.00 3.01
17 18 5.406780 GCAGATGTAGTTATCCGGAATGAAG 59.593 44.000 9.01 0.00 0.00 3.02
18 19 5.297547 GCAGATGTAGTTATCCGGAATGAA 58.702 41.667 9.01 0.00 0.00 2.57
19 20 4.262463 GGCAGATGTAGTTATCCGGAATGA 60.262 45.833 9.01 0.00 0.00 2.57
20 21 3.997021 GGCAGATGTAGTTATCCGGAATG 59.003 47.826 9.01 0.00 0.00 2.67
21 22 3.646162 TGGCAGATGTAGTTATCCGGAAT 59.354 43.478 9.01 0.00 0.00 3.01
22 23 3.035363 TGGCAGATGTAGTTATCCGGAA 58.965 45.455 9.01 0.00 0.00 4.30
23 24 2.673258 TGGCAGATGTAGTTATCCGGA 58.327 47.619 6.61 6.61 0.00 5.14
24 25 3.131396 GTTGGCAGATGTAGTTATCCGG 58.869 50.000 0.00 0.00 0.00 5.14
25 26 3.131396 GGTTGGCAGATGTAGTTATCCG 58.869 50.000 0.00 0.00 0.00 4.18
26 27 4.130118 CTGGTTGGCAGATGTAGTTATCC 58.870 47.826 0.00 0.00 0.00 2.59
27 28 4.130118 CCTGGTTGGCAGATGTAGTTATC 58.870 47.826 0.00 0.00 0.00 1.75
28 29 3.780294 TCCTGGTTGGCAGATGTAGTTAT 59.220 43.478 0.00 0.00 35.26 1.89
29 30 3.178046 TCCTGGTTGGCAGATGTAGTTA 58.822 45.455 0.00 0.00 35.26 2.24
30 31 1.985159 TCCTGGTTGGCAGATGTAGTT 59.015 47.619 0.00 0.00 35.26 2.24
31 32 1.656587 TCCTGGTTGGCAGATGTAGT 58.343 50.000 0.00 0.00 35.26 2.73
32 33 2.171237 TCATCCTGGTTGGCAGATGTAG 59.829 50.000 11.86 0.00 35.26 2.74
33 34 2.092968 GTCATCCTGGTTGGCAGATGTA 60.093 50.000 11.86 0.00 35.26 2.29
34 35 0.994247 TCATCCTGGTTGGCAGATGT 59.006 50.000 11.86 0.00 35.26 3.06
35 36 1.340308 TGTCATCCTGGTTGGCAGATG 60.340 52.381 7.94 7.21 35.26 2.90
36 37 0.994247 TGTCATCCTGGTTGGCAGAT 59.006 50.000 7.94 0.00 35.26 2.90
37 38 0.770499 TTGTCATCCTGGTTGGCAGA 59.230 50.000 11.51 2.15 35.26 4.26
38 39 0.883833 GTTGTCATCCTGGTTGGCAG 59.116 55.000 11.51 0.00 35.26 4.85
39 40 0.478072 AGTTGTCATCCTGGTTGGCA 59.522 50.000 7.94 7.94 35.26 4.92
40 41 2.489938 TAGTTGTCATCCTGGTTGGC 57.510 50.000 2.38 2.38 35.26 4.52
41 42 5.713025 CAATTTAGTTGTCATCCTGGTTGG 58.287 41.667 4.99 0.00 33.01 3.77
54 55 2.223249 CCGCGGGATGACAATTTAGTTG 60.223 50.000 20.10 0.00 43.64 3.16
55 56 2.014128 CCGCGGGATGACAATTTAGTT 58.986 47.619 20.10 0.00 0.00 2.24
56 57 1.663695 CCGCGGGATGACAATTTAGT 58.336 50.000 20.10 0.00 0.00 2.24
57 58 0.944386 CCCGCGGGATGACAATTTAG 59.056 55.000 41.82 6.56 37.50 1.85
58 59 3.088259 CCCGCGGGATGACAATTTA 57.912 52.632 41.82 0.00 37.50 1.40
59 60 3.918544 CCCGCGGGATGACAATTT 58.081 55.556 41.82 0.00 37.50 1.82
70 71 0.316204 CTATGTTAGGTACCCCGCGG 59.684 60.000 21.04 21.04 35.12 6.46
71 72 0.319297 GCTATGTTAGGTACCCCGCG 60.319 60.000 8.74 0.00 35.12 6.46
72 73 1.046204 AGCTATGTTAGGTACCCCGC 58.954 55.000 8.74 0.00 34.21 6.13
73 74 1.270147 GCAGCTATGTTAGGTACCCCG 60.270 57.143 8.74 0.00 34.67 5.73
74 75 1.270147 CGCAGCTATGTTAGGTACCCC 60.270 57.143 8.74 0.00 34.67 4.95
75 76 2.150397 CGCAGCTATGTTAGGTACCC 57.850 55.000 8.74 0.00 34.67 3.69
90 91 3.129502 CCACATGTCCTGGCGCAG 61.130 66.667 10.83 4.65 0.00 5.18
95 96 1.269012 AAAATGGCCACATGTCCTGG 58.731 50.000 8.16 0.00 37.40 4.45
96 97 2.690786 CAAAAATGGCCACATGTCCTG 58.309 47.619 8.16 0.00 37.40 3.86
97 98 1.002315 GCAAAAATGGCCACATGTCCT 59.998 47.619 8.16 0.00 37.40 3.85
98 99 1.002315 AGCAAAAATGGCCACATGTCC 59.998 47.619 8.16 0.00 37.40 4.02
99 100 2.460757 AGCAAAAATGGCCACATGTC 57.539 45.000 8.16 1.72 37.40 3.06
100 101 2.769893 GAAGCAAAAATGGCCACATGT 58.230 42.857 8.16 0.00 37.40 3.21
101 102 1.727880 CGAAGCAAAAATGGCCACATG 59.272 47.619 8.16 6.01 37.40 3.21
102 103 1.344114 ACGAAGCAAAAATGGCCACAT 59.656 42.857 8.16 0.00 39.54 3.21
103 104 0.749649 ACGAAGCAAAAATGGCCACA 59.250 45.000 8.16 0.00 0.00 4.17
104 105 1.139163 CACGAAGCAAAAATGGCCAC 58.861 50.000 8.16 0.00 0.00 5.01
105 106 0.749649 ACACGAAGCAAAAATGGCCA 59.250 45.000 8.56 8.56 0.00 5.36
106 107 1.269517 TGACACGAAGCAAAAATGGCC 60.270 47.619 0.00 0.00 0.00 5.36
107 108 1.786579 GTGACACGAAGCAAAAATGGC 59.213 47.619 0.00 0.00 0.00 4.40
108 109 2.788786 GTGTGACACGAAGCAAAAATGG 59.211 45.455 0.00 0.00 0.00 3.16
109 110 3.240401 GTGTGTGACACGAAGCAAAAATG 59.760 43.478 11.51 0.00 39.53 2.32
110 111 3.434637 GTGTGTGACACGAAGCAAAAAT 58.565 40.909 11.51 0.00 39.53 1.82
111 112 2.857618 GTGTGTGACACGAAGCAAAAA 58.142 42.857 11.51 0.00 39.53 1.94
112 113 2.535934 GTGTGTGACACGAAGCAAAA 57.464 45.000 11.51 0.00 39.53 2.44
129 130 4.794439 TCATCTCCACCGCGCGTG 62.794 66.667 29.95 24.42 42.62 5.34
130 131 4.498520 CTCATCTCCACCGCGCGT 62.499 66.667 29.95 14.24 0.00 6.01
131 132 2.990674 CTACTCATCTCCACCGCGCG 62.991 65.000 25.67 25.67 0.00 6.86
132 133 1.299468 CTACTCATCTCCACCGCGC 60.299 63.158 0.00 0.00 0.00 6.86
133 134 1.306148 TACTACTCATCTCCACCGCG 58.694 55.000 0.00 0.00 0.00 6.46
134 135 4.051922 CAAATACTACTCATCTCCACCGC 58.948 47.826 0.00 0.00 0.00 5.68
135 136 5.263968 ACAAATACTACTCATCTCCACCG 57.736 43.478 0.00 0.00 0.00 4.94
136 137 6.640518 TCAACAAATACTACTCATCTCCACC 58.359 40.000 0.00 0.00 0.00 4.61
137 138 7.602644 TGTTCAACAAATACTACTCATCTCCAC 59.397 37.037 0.00 0.00 0.00 4.02
138 139 7.676004 TGTTCAACAAATACTACTCATCTCCA 58.324 34.615 0.00 0.00 0.00 3.86
139 140 8.607459 CATGTTCAACAAATACTACTCATCTCC 58.393 37.037 0.00 0.00 0.00 3.71
140 141 9.155975 ACATGTTCAACAAATACTACTCATCTC 57.844 33.333 0.00 0.00 0.00 2.75
141 142 8.939929 CACATGTTCAACAAATACTACTCATCT 58.060 33.333 0.00 0.00 0.00 2.90
142 143 8.935844 TCACATGTTCAACAAATACTACTCATC 58.064 33.333 0.00 0.00 0.00 2.92
143 144 8.721478 GTCACATGTTCAACAAATACTACTCAT 58.279 33.333 0.00 0.00 0.00 2.90
144 145 7.713073 TGTCACATGTTCAACAAATACTACTCA 59.287 33.333 0.00 0.00 0.00 3.41
145 146 8.009974 GTGTCACATGTTCAACAAATACTACTC 58.990 37.037 0.00 0.00 0.00 2.59
146 147 7.307160 CGTGTCACATGTTCAACAAATACTACT 60.307 37.037 0.00 0.00 0.00 2.57
147 148 6.790350 CGTGTCACATGTTCAACAAATACTAC 59.210 38.462 0.00 0.00 0.00 2.73
148 149 6.702282 TCGTGTCACATGTTCAACAAATACTA 59.298 34.615 0.00 0.00 0.00 1.82
149 150 5.525745 TCGTGTCACATGTTCAACAAATACT 59.474 36.000 0.00 0.00 0.00 2.12
150 151 5.743467 TCGTGTCACATGTTCAACAAATAC 58.257 37.500 0.00 0.00 0.00 1.89
151 152 5.993106 TCGTGTCACATGTTCAACAAATA 57.007 34.783 0.00 0.00 0.00 1.40
152 153 4.891627 TCGTGTCACATGTTCAACAAAT 57.108 36.364 0.00 0.00 0.00 2.32
153 154 4.155099 ACTTCGTGTCACATGTTCAACAAA 59.845 37.500 0.00 0.00 0.00 2.83
154 155 3.687212 ACTTCGTGTCACATGTTCAACAA 59.313 39.130 0.00 0.00 0.00 2.83
155 156 3.266636 ACTTCGTGTCACATGTTCAACA 58.733 40.909 0.00 0.00 0.00 3.33
156 157 3.944422 ACTTCGTGTCACATGTTCAAC 57.056 42.857 0.00 0.00 0.00 3.18
157 158 4.271533 GGTTACTTCGTGTCACATGTTCAA 59.728 41.667 0.00 0.00 0.00 2.69
158 159 3.805422 GGTTACTTCGTGTCACATGTTCA 59.195 43.478 0.00 0.00 0.00 3.18
159 160 3.121126 CGGTTACTTCGTGTCACATGTTC 60.121 47.826 0.00 0.00 0.00 3.18
160 161 2.798283 CGGTTACTTCGTGTCACATGTT 59.202 45.455 0.00 0.00 0.00 2.71
161 162 2.400399 CGGTTACTTCGTGTCACATGT 58.600 47.619 3.42 0.00 0.00 3.21
162 163 1.126113 GCGGTTACTTCGTGTCACATG 59.874 52.381 3.42 0.00 0.00 3.21
163 164 1.425412 GCGGTTACTTCGTGTCACAT 58.575 50.000 3.42 0.00 0.00 3.21
164 165 0.935831 CGCGGTTACTTCGTGTCACA 60.936 55.000 0.00 0.00 33.99 3.58
165 166 1.771044 CGCGGTTACTTCGTGTCAC 59.229 57.895 0.00 0.00 33.99 3.67
166 167 2.017783 GCGCGGTTACTTCGTGTCA 61.018 57.895 8.83 0.00 39.89 3.58
167 168 2.723719 GGCGCGGTTACTTCGTGTC 61.724 63.158 8.83 0.00 39.89 3.67
168 169 2.735857 GGCGCGGTTACTTCGTGT 60.736 61.111 8.83 0.00 39.89 4.49
169 170 3.484547 GGGCGCGGTTACTTCGTG 61.485 66.667 8.83 0.00 40.58 4.35
170 171 3.993584 TGGGCGCGGTTACTTCGT 61.994 61.111 8.83 0.00 0.00 3.85
171 172 3.484547 GTGGGCGCGGTTACTTCG 61.485 66.667 8.83 0.00 0.00 3.79
172 173 1.743995 ATGTGGGCGCGGTTACTTC 60.744 57.895 8.83 0.00 0.00 3.01
173 174 2.038269 CATGTGGGCGCGGTTACTT 61.038 57.895 8.83 0.00 0.00 2.24
174 175 2.435938 CATGTGGGCGCGGTTACT 60.436 61.111 8.83 0.00 0.00 2.24
175 176 2.744709 ACATGTGGGCGCGGTTAC 60.745 61.111 8.83 0.00 0.00 2.50
176 177 2.744318 CACATGTGGGCGCGGTTA 60.744 61.111 18.51 0.00 0.00 2.85
177 178 4.947147 ACACATGTGGGCGCGGTT 62.947 61.111 28.64 3.06 34.19 4.44
186 187 4.082081 ACATTAGAATTGCCCACACATGTG 60.082 41.667 24.25 24.25 45.23 3.21
187 188 4.088634 ACATTAGAATTGCCCACACATGT 58.911 39.130 0.00 0.00 0.00 3.21
188 189 4.400251 AGACATTAGAATTGCCCACACATG 59.600 41.667 0.00 0.00 0.00 3.21
189 190 4.400251 CAGACATTAGAATTGCCCACACAT 59.600 41.667 0.00 0.00 0.00 3.21
190 191 3.758023 CAGACATTAGAATTGCCCACACA 59.242 43.478 0.00 0.00 0.00 3.72
191 192 3.428045 GCAGACATTAGAATTGCCCACAC 60.428 47.826 0.00 0.00 0.00 3.82
192 193 2.754552 GCAGACATTAGAATTGCCCACA 59.245 45.455 0.00 0.00 0.00 4.17
193 194 2.099756 GGCAGACATTAGAATTGCCCAC 59.900 50.000 2.47 0.00 46.61 4.61
194 195 2.378038 GGCAGACATTAGAATTGCCCA 58.622 47.619 2.47 0.00 46.61 5.36
197 198 2.754552 TGTGGGCAGACATTAGAATTGC 59.245 45.455 0.00 0.00 0.00 3.56
198 199 3.758023 TGTGTGGGCAGACATTAGAATTG 59.242 43.478 0.00 0.00 28.99 2.32
199 200 4.032960 TGTGTGGGCAGACATTAGAATT 57.967 40.909 0.00 0.00 28.99 2.17
200 201 3.719268 TGTGTGGGCAGACATTAGAAT 57.281 42.857 0.00 0.00 28.99 2.40
201 202 3.500448 TTGTGTGGGCAGACATTAGAA 57.500 42.857 0.00 0.00 34.44 2.10
202 203 3.609853 GATTGTGTGGGCAGACATTAGA 58.390 45.455 0.00 0.00 34.44 2.10
203 204 2.684881 GGATTGTGTGGGCAGACATTAG 59.315 50.000 0.00 0.00 34.44 1.73
204 205 2.722094 GGATTGTGTGGGCAGACATTA 58.278 47.619 0.00 0.00 34.44 1.90
205 206 1.549203 GGATTGTGTGGGCAGACATT 58.451 50.000 0.00 0.00 34.44 2.71
206 207 0.677731 CGGATTGTGTGGGCAGACAT 60.678 55.000 0.00 0.00 34.44 3.06
207 208 1.302431 CGGATTGTGTGGGCAGACA 60.302 57.895 0.00 0.00 32.40 3.41
208 209 1.302511 ACGGATTGTGTGGGCAGAC 60.303 57.895 0.00 0.00 0.00 3.51
209 210 1.302431 CACGGATTGTGTGGGCAGA 60.302 57.895 0.00 0.00 43.88 4.26
210 211 3.266964 CACGGATTGTGTGGGCAG 58.733 61.111 0.00 0.00 43.88 4.85
218 219 1.002773 GAGGTAACCCACACGGATTGT 59.997 52.381 0.00 0.00 36.23 2.71
219 220 1.677820 GGAGGTAACCCACACGGATTG 60.678 57.143 0.00 0.00 34.64 2.67
220 221 0.616891 GGAGGTAACCCACACGGATT 59.383 55.000 0.00 0.00 34.64 3.01
221 222 0.252558 AGGAGGTAACCCACACGGAT 60.253 55.000 0.00 0.00 34.64 4.18
222 223 1.156803 AGGAGGTAACCCACACGGA 59.843 57.895 0.00 0.00 34.64 4.69
223 224 1.295423 CAGGAGGTAACCCACACGG 59.705 63.158 0.00 0.00 37.81 4.94
224 225 1.375523 GCAGGAGGTAACCCACACG 60.376 63.158 0.00 0.00 37.17 4.49
225 226 1.272807 TAGCAGGAGGTAACCCACAC 58.727 55.000 0.00 0.00 37.17 3.82
226 227 2.032965 TTAGCAGGAGGTAACCCACA 57.967 50.000 0.00 0.00 33.10 4.17
232 233 2.038033 GTGTGGTGTTAGCAGGAGGTAA 59.962 50.000 0.00 0.00 35.49 2.85
233 234 1.621814 GTGTGGTGTTAGCAGGAGGTA 59.378 52.381 0.00 0.00 0.00 3.08
234 235 0.396811 GTGTGGTGTTAGCAGGAGGT 59.603 55.000 0.00 0.00 0.00 3.85
235 236 0.396435 TGTGTGGTGTTAGCAGGAGG 59.604 55.000 0.00 0.00 0.00 4.30
236 237 1.512926 GTGTGTGGTGTTAGCAGGAG 58.487 55.000 0.00 0.00 0.00 3.69
237 238 0.107831 GGTGTGTGGTGTTAGCAGGA 59.892 55.000 0.00 0.00 0.00 3.86
238 239 1.227999 CGGTGTGTGGTGTTAGCAGG 61.228 60.000 0.00 0.00 0.00 4.85
239 240 0.531974 ACGGTGTGTGGTGTTAGCAG 60.532 55.000 0.00 0.00 0.00 4.24
240 241 0.812014 CACGGTGTGTGGTGTTAGCA 60.812 55.000 0.00 0.00 45.21 3.49
241 242 1.938861 CACGGTGTGTGGTGTTAGC 59.061 57.895 0.00 0.00 45.21 3.09
252 253 3.345808 GACATGCGCACACGGTGT 61.346 61.111 14.90 13.80 40.57 4.16
253 254 4.428922 CGACATGCGCACACGGTG 62.429 66.667 14.90 9.78 40.57 4.94
254 255 3.998443 TATTCGACATGCGCACACGGT 62.998 52.381 14.90 9.16 40.57 4.83
255 256 1.417577 TATTCGACATGCGCACACGG 61.418 55.000 14.90 5.30 40.57 4.94
256 257 0.576798 ATATTCGACATGCGCACACG 59.423 50.000 14.90 18.94 44.07 4.49
257 258 2.096909 GGTATATTCGACATGCGCACAC 60.097 50.000 14.90 6.20 40.61 3.82
258 259 2.131972 GGTATATTCGACATGCGCACA 58.868 47.619 14.90 0.00 40.61 4.57
259 260 2.096909 GTGGTATATTCGACATGCGCAC 60.097 50.000 14.90 0.00 40.61 5.34
260 261 2.131972 GTGGTATATTCGACATGCGCA 58.868 47.619 14.96 14.96 40.61 6.09
261 262 2.131972 TGTGGTATATTCGACATGCGC 58.868 47.619 0.00 0.00 40.61 6.09
262 263 5.576774 ACATATGTGGTATATTCGACATGCG 59.423 40.000 16.65 11.15 37.35 4.73
263 264 6.765089 CACATATGTGGTATATTCGACATGC 58.235 40.000 25.41 0.00 42.10 4.06
278 279 2.224079 GCCGATAACTGCCACATATGTG 59.776 50.000 26.02 26.02 45.23 3.21
279 280 2.494059 GCCGATAACTGCCACATATGT 58.506 47.619 1.41 1.41 0.00 2.29
280 281 1.460743 CGCCGATAACTGCCACATATG 59.539 52.381 0.00 0.00 0.00 1.78
281 282 1.070134 ACGCCGATAACTGCCACATAT 59.930 47.619 0.00 0.00 0.00 1.78
282 283 0.462375 ACGCCGATAACTGCCACATA 59.538 50.000 0.00 0.00 0.00 2.29
283 284 0.810031 GACGCCGATAACTGCCACAT 60.810 55.000 0.00 0.00 0.00 3.21
284 285 1.447140 GACGCCGATAACTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
285 286 2.171725 GGACGCCGATAACTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
286 287 1.966901 ATGGACGCCGATAACTGCCA 61.967 55.000 0.00 0.00 0.00 4.92
287 288 1.222115 GATGGACGCCGATAACTGCC 61.222 60.000 0.00 0.00 0.00 4.85
288 289 1.222115 GGATGGACGCCGATAACTGC 61.222 60.000 0.00 0.00 0.00 4.40
289 290 0.389391 AGGATGGACGCCGATAACTG 59.611 55.000 0.00 0.00 0.00 3.16
290 291 1.120530 AAGGATGGACGCCGATAACT 58.879 50.000 0.00 0.00 0.00 2.24
291 292 1.949465 AAAGGATGGACGCCGATAAC 58.051 50.000 0.00 0.00 0.00 1.89
292 293 2.702592 AAAAGGATGGACGCCGATAA 57.297 45.000 0.00 0.00 0.00 1.75
293 294 3.823281 TTAAAAGGATGGACGCCGATA 57.177 42.857 0.00 0.00 0.00 2.92
294 295 2.702592 TTAAAAGGATGGACGCCGAT 57.297 45.000 0.00 0.00 0.00 4.18
295 296 2.285083 CATTAAAAGGATGGACGCCGA 58.715 47.619 0.00 0.00 0.00 5.54
296 297 1.268539 GCATTAAAAGGATGGACGCCG 60.269 52.381 0.00 0.00 0.00 6.46
297 298 2.024414 AGCATTAAAAGGATGGACGCC 58.976 47.619 0.00 0.00 0.00 5.68
298 299 2.945668 AGAGCATTAAAAGGATGGACGC 59.054 45.455 0.00 0.00 0.00 5.19
299 300 6.867662 AATAGAGCATTAAAAGGATGGACG 57.132 37.500 0.00 0.00 0.00 4.79
384 385 2.764010 TCATGCCGGTTGTGATACTAGT 59.236 45.455 1.90 0.00 0.00 2.57
394 395 0.664166 GCTTTGTGTCATGCCGGTTG 60.664 55.000 1.90 1.07 0.00 3.77
403 404 3.713858 CACAATCAAGGCTTTGTGTCA 57.286 42.857 18.15 0.00 44.79 3.58
417 418 1.470098 CAGGTGCAGTAAGCCACAATC 59.530 52.381 0.00 0.00 44.83 2.67
418 419 1.202927 ACAGGTGCAGTAAGCCACAAT 60.203 47.619 0.00 0.00 44.83 2.71
420 421 0.182537 AACAGGTGCAGTAAGCCACA 59.817 50.000 0.00 0.00 44.83 4.17
424 425 0.039165 GCCAAACAGGTGCAGTAAGC 60.039 55.000 0.00 0.00 40.61 3.09
427 428 3.019964 CTGCCAAACAGGTGCAGTA 57.980 52.632 2.69 0.00 45.69 2.74
498 518 8.560355 TTTCATATGTCGATTCTCTCCAAAAA 57.440 30.769 1.90 0.00 0.00 1.94
499 519 8.615211 CATTTCATATGTCGATTCTCTCCAAAA 58.385 33.333 1.90 0.00 0.00 2.44
500 520 7.254898 GCATTTCATATGTCGATTCTCTCCAAA 60.255 37.037 1.90 0.00 0.00 3.28
501 521 6.203530 GCATTTCATATGTCGATTCTCTCCAA 59.796 38.462 1.90 0.00 0.00 3.53
502 522 5.698089 GCATTTCATATGTCGATTCTCTCCA 59.302 40.000 1.90 0.00 0.00 3.86
503 523 5.931146 AGCATTTCATATGTCGATTCTCTCC 59.069 40.000 1.90 0.00 0.00 3.71
504 524 7.359933 GGAAGCATTTCATATGTCGATTCTCTC 60.360 40.741 1.90 0.00 34.90 3.20
505 525 6.426328 GGAAGCATTTCATATGTCGATTCTCT 59.574 38.462 1.90 0.00 34.90 3.10
506 526 6.426328 AGGAAGCATTTCATATGTCGATTCTC 59.574 38.462 1.90 0.66 34.90 2.87
507 527 6.204301 CAGGAAGCATTTCATATGTCGATTCT 59.796 38.462 1.90 0.00 34.90 2.40
508 528 6.369005 CAGGAAGCATTTCATATGTCGATTC 58.631 40.000 1.90 4.62 34.90 2.52
509 529 5.278169 GCAGGAAGCATTTCATATGTCGATT 60.278 40.000 1.90 0.00 44.79 3.34
569 589 5.923204 TCAGAAATGGCAAAGGCTTAAAAA 58.077 33.333 0.00 0.00 40.87 1.94
604 625 5.907197 AAATATCACGGTCTAAGCAATCG 57.093 39.130 0.00 0.00 0.00 3.34
609 630 8.138365 TGTATGAAAAATATCACGGTCTAAGC 57.862 34.615 0.00 0.00 30.82 3.09
629 650 6.999456 TGCAATGTCGTACTGTATTTGTATG 58.001 36.000 0.00 0.00 0.00 2.39
630 651 7.786178 ATGCAATGTCGTACTGTATTTGTAT 57.214 32.000 0.00 0.00 0.00 2.29
631 652 8.880878 ATATGCAATGTCGTACTGTATTTGTA 57.119 30.769 0.00 0.00 0.00 2.41
632 653 7.786178 ATATGCAATGTCGTACTGTATTTGT 57.214 32.000 0.00 0.00 0.00 2.83
633 654 9.158364 GAAATATGCAATGTCGTACTGTATTTG 57.842 33.333 0.00 0.00 0.00 2.32
636 657 8.662781 AAGAAATATGCAATGTCGTACTGTAT 57.337 30.769 0.00 0.00 0.00 2.29
637 658 8.487313 AAAGAAATATGCAATGTCGTACTGTA 57.513 30.769 0.00 0.00 0.00 2.74
638 659 6.985188 AAGAAATATGCAATGTCGTACTGT 57.015 33.333 0.00 0.00 0.00 3.55
639 660 6.624917 CGAAAGAAATATGCAATGTCGTACTG 59.375 38.462 0.00 0.00 0.00 2.74
640 661 6.533723 TCGAAAGAAATATGCAATGTCGTACT 59.466 34.615 0.00 0.00 37.03 2.73
641 662 6.623743 GTCGAAAGAAATATGCAATGTCGTAC 59.376 38.462 0.00 0.00 45.01 3.67
642 663 6.533723 AGTCGAAAGAAATATGCAATGTCGTA 59.466 34.615 0.00 0.00 45.01 3.43
643 664 5.351465 AGTCGAAAGAAATATGCAATGTCGT 59.649 36.000 0.00 0.00 45.01 4.34
644 665 5.674148 CAGTCGAAAGAAATATGCAATGTCG 59.326 40.000 0.00 0.00 45.01 4.35
645 666 6.467047 CACAGTCGAAAGAAATATGCAATGTC 59.533 38.462 0.00 0.00 45.01 3.06
646 667 6.317088 CACAGTCGAAAGAAATATGCAATGT 58.683 36.000 0.00 0.00 45.01 2.71
673 694 0.524862 CTGAATCAGTGGCAGCCAAC 59.475 55.000 18.28 10.87 34.18 3.77
676 697 1.307097 GATCTGAATCAGTGGCAGCC 58.693 55.000 10.36 3.66 32.61 4.85
741 763 1.848431 GGATAGGGGGAAGAGGGCC 60.848 68.421 0.00 0.00 0.00 5.80
743 765 2.293251 GGATAGGATAGGGGGAAGAGGG 60.293 59.091 0.00 0.00 0.00 4.30
744 766 2.293251 GGGATAGGATAGGGGGAAGAGG 60.293 59.091 0.00 0.00 0.00 3.69
745 767 2.293251 GGGGATAGGATAGGGGGAAGAG 60.293 59.091 0.00 0.00 0.00 2.85
746 768 1.728701 GGGGATAGGATAGGGGGAAGA 59.271 57.143 0.00 0.00 0.00 2.87
747 769 1.731062 AGGGGATAGGATAGGGGGAAG 59.269 57.143 0.00 0.00 0.00 3.46
790 830 3.391382 GGGGCAGTGTAGCGGACT 61.391 66.667 0.00 0.00 34.64 3.85
791 831 3.372554 GAGGGGCAGTGTAGCGGAC 62.373 68.421 0.00 0.00 34.64 4.79
792 832 3.075005 GAGGGGCAGTGTAGCGGA 61.075 66.667 0.00 0.00 34.64 5.54
793 833 4.162690 GGAGGGGCAGTGTAGCGG 62.163 72.222 0.00 0.00 34.64 5.52
794 834 3.077556 AGGAGGGGCAGTGTAGCG 61.078 66.667 0.00 0.00 34.64 4.26
795 835 1.553690 TTCAGGAGGGGCAGTGTAGC 61.554 60.000 0.00 0.00 0.00 3.58
796 836 1.207791 ATTCAGGAGGGGCAGTGTAG 58.792 55.000 0.00 0.00 0.00 2.74
797 837 1.559682 GAATTCAGGAGGGGCAGTGTA 59.440 52.381 0.00 0.00 0.00 2.90
1302 1350 0.460987 CCCTGACGAGCACCTTCATC 60.461 60.000 0.00 0.00 0.00 2.92
1425 1473 1.069022 CCGAACATGTCAAGCTGGTTG 60.069 52.381 13.13 13.13 37.52 3.77
1532 1580 1.496060 ATTGCCCATCTCCGTGTAGA 58.504 50.000 0.00 0.00 0.00 2.59
1533 1581 2.289072 CCTATTGCCCATCTCCGTGTAG 60.289 54.545 0.00 0.00 0.00 2.74
1536 1584 0.250467 CCCTATTGCCCATCTCCGTG 60.250 60.000 0.00 0.00 0.00 4.94
1546 1594 0.752658 GGTTTGATGCCCCTATTGCC 59.247 55.000 0.00 0.00 0.00 4.52
1552 1600 1.142688 AGGTCAGGTTTGATGCCCCT 61.143 55.000 0.00 0.00 35.39 4.79
1557 1605 3.480470 AGTGACAAGGTCAGGTTTGATG 58.520 45.455 0.00 0.00 43.57 3.07
1587 1635 1.536766 CCACACAACGCATTGATCACT 59.463 47.619 0.00 0.00 39.30 3.41
1606 1654 3.680196 GCAGTCCTAACCTGATGAACTCC 60.680 52.174 0.00 0.00 31.38 3.85
1633 1681 1.485480 AGACATGTCCTCCAGCATCAG 59.515 52.381 22.21 0.00 0.00 2.90
1657 1705 2.461110 CGTTAGGCGCCACACCATC 61.461 63.158 31.54 10.22 0.00 3.51
1659 1707 3.583276 CTCGTTAGGCGCCACACCA 62.583 63.158 31.54 12.27 41.07 4.17
1710 1758 1.456518 CTCGATGCTCCCCTCCTCA 60.457 63.158 0.00 0.00 0.00 3.86
1731 1779 0.035630 GTGCCTTCATCCTCAGTGCT 60.036 55.000 0.00 0.00 0.00 4.40
1821 1869 1.107114 GAGCATCCTCGACTCTTCCA 58.893 55.000 0.00 0.00 0.00 3.53
1833 1881 4.054671 GCTGTACATAACTGAGAGCATCC 58.945 47.826 0.00 0.00 33.66 3.51
2030 2078 2.373169 ACAGCCTCATCAAGTTCTCCAA 59.627 45.455 0.00 0.00 0.00 3.53
2043 2091 2.804986 TTATGATTGCCACAGCCTCA 57.195 45.000 0.00 0.00 38.69 3.86
2050 2098 5.508489 CCACCATCTGATTTATGATTGCCAC 60.508 44.000 0.00 0.00 0.00 5.01
2051 2099 4.585581 CCACCATCTGATTTATGATTGCCA 59.414 41.667 0.00 0.00 0.00 4.92
2056 2104 6.111382 CGCTATCCACCATCTGATTTATGAT 58.889 40.000 0.00 0.00 0.00 2.45
2095 2143 7.633789 ACAATGAGAGTATTGAAGGTGGTAAT 58.366 34.615 5.58 0.00 39.79 1.89
2125 2173 6.053650 CCTCAAGATGATTCTCTGTGCATAA 58.946 40.000 0.00 0.00 0.00 1.90
2141 2189 2.646798 AGGTTCAAGGCTTCCTCAAGAT 59.353 45.455 0.00 0.00 30.89 2.40
2142 2190 2.057922 AGGTTCAAGGCTTCCTCAAGA 58.942 47.619 0.00 0.00 30.89 3.02
2452 2500 5.221303 CCTCCTCTGCTTCTTCTATTCTCAG 60.221 48.000 0.00 0.00 0.00 3.35
2705 2753 7.718272 ACAACATCAACTTCAAATCCATTTG 57.282 32.000 5.77 5.77 46.39 2.32
2883 2931 4.774726 TCCCTATACAGATTCAGAGCATCC 59.225 45.833 0.00 0.00 33.66 3.51
3270 3318 7.254727 CGTACTCAGTACTTTCCCAGATACTAC 60.255 44.444 13.21 0.00 36.93 2.73
3273 3321 5.356470 ACGTACTCAGTACTTTCCCAGATAC 59.644 44.000 13.21 0.00 36.93 2.24
3274 3322 5.356190 CACGTACTCAGTACTTTCCCAGATA 59.644 44.000 13.21 0.00 36.93 1.98
3275 3323 4.158025 CACGTACTCAGTACTTTCCCAGAT 59.842 45.833 13.21 0.00 36.93 2.90
3276 3324 3.504906 CACGTACTCAGTACTTTCCCAGA 59.495 47.826 13.21 0.00 36.93 3.86
3296 3344 7.437862 TGATGAACTAACCAGCAAAATTTTCAC 59.562 33.333 0.00 0.00 0.00 3.18
3299 3347 6.930722 CCTGATGAACTAACCAGCAAAATTTT 59.069 34.615 0.00 0.00 28.96 1.82
3352 3401 3.689649 CCCACCAAGTAACAAGCATAGTC 59.310 47.826 0.00 0.00 0.00 2.59
3383 3432 6.261603 CCAAGATAAGCATCTTCTACATGCAA 59.738 38.462 7.37 0.00 46.50 4.08
3384 3433 5.761726 CCAAGATAAGCATCTTCTACATGCA 59.238 40.000 7.37 0.00 46.50 3.96
3421 3470 5.105554 TGGAAATGGTGATAAACAATTCCCG 60.106 40.000 11.86 0.00 28.85 5.14
3569 3618 5.048782 TGCTGACATTTTTAGCTGTAACCAG 60.049 40.000 0.00 0.00 41.91 4.00
3582 3631 8.059798 AGAATATAAGTTGCTGCTGACATTTT 57.940 30.769 0.00 0.00 0.00 1.82
3613 3662 4.708177 AGATGCGGCACTGTATAATTCTT 58.292 39.130 4.03 0.00 0.00 2.52
3615 3664 4.310769 AGAGATGCGGCACTGTATAATTC 58.689 43.478 4.03 0.00 0.00 2.17
3648 3697 2.345244 CGCCTGTGTTCTCAGCCT 59.655 61.111 0.00 0.00 34.47 4.58
3650 3699 0.740868 TATGCGCCTGTGTTCTCAGC 60.741 55.000 4.18 0.00 34.47 4.26
3653 3702 1.432270 GCCTATGCGCCTGTGTTCTC 61.432 60.000 4.18 0.00 0.00 2.87
3667 3716 3.760580 AGCTAAATCTGAAGCGCCTAT 57.239 42.857 2.29 0.00 43.63 2.57
3773 3822 8.358148 AGAACCTTACCAATAGATATGTACACG 58.642 37.037 0.00 0.00 0.00 4.49
3901 3950 1.470098 CCGCTTGTTCCTTGAGGATTG 59.530 52.381 0.00 0.00 44.98 2.67
3941 3990 2.770802 AGCCATGATAAGTCAGTGAGCT 59.229 45.455 0.00 0.00 37.87 4.09
3953 4002 5.997746 GCAGTATTCCTTTACAGCCATGATA 59.002 40.000 0.00 0.00 30.76 2.15
3955 4004 4.199310 GCAGTATTCCTTTACAGCCATGA 58.801 43.478 0.00 0.00 30.76 3.07
3956 4005 3.947196 TGCAGTATTCCTTTACAGCCATG 59.053 43.478 0.00 0.00 34.68 3.66
4041 4090 4.143073 CGACAATGAAAATGGCAAATGTGG 60.143 41.667 0.00 0.00 0.00 4.17
4049 4098 2.661195 CGAAACCGACAATGAAAATGGC 59.339 45.455 0.00 0.00 0.00 4.40
4050 4099 4.153958 TCGAAACCGACAATGAAAATGG 57.846 40.909 0.00 0.00 0.00 3.16
4052 4101 5.682943 TCTTCGAAACCGACAATGAAAAT 57.317 34.783 0.00 0.00 35.58 1.82
4106 4156 3.932822 TGGCACAACAGACGTTACATAT 58.067 40.909 0.00 0.00 32.75 1.78
4144 4194 2.671854 GCTCGCTAGCTTGTCCTTC 58.328 57.895 13.93 0.00 45.85 3.46
4172 4222 5.419542 GGAAGGATTAAAAGATGTTTGGGC 58.580 41.667 0.00 0.00 0.00 5.36
4173 4223 5.394115 CGGGAAGGATTAAAAGATGTTTGGG 60.394 44.000 0.00 0.00 0.00 4.12
4174 4224 5.417580 TCGGGAAGGATTAAAAGATGTTTGG 59.582 40.000 0.00 0.00 0.00 3.28
4175 4225 6.374333 TCTCGGGAAGGATTAAAAGATGTTTG 59.626 38.462 0.00 0.00 0.00 2.93
4176 4226 6.374613 GTCTCGGGAAGGATTAAAAGATGTTT 59.625 38.462 0.00 0.00 0.00 2.83
4177 4227 5.880887 GTCTCGGGAAGGATTAAAAGATGTT 59.119 40.000 0.00 0.00 0.00 2.71
4178 4228 5.045869 TGTCTCGGGAAGGATTAAAAGATGT 60.046 40.000 0.00 0.00 0.00 3.06
4179 4229 5.428253 TGTCTCGGGAAGGATTAAAAGATG 58.572 41.667 0.00 0.00 0.00 2.90
4181 4231 4.775780 TCTGTCTCGGGAAGGATTAAAAGA 59.224 41.667 0.00 0.00 0.00 2.52
4182 4232 5.086104 TCTGTCTCGGGAAGGATTAAAAG 57.914 43.478 0.00 0.00 0.00 2.27
4196 4251 7.975750 TCTATCCGTATGAATTATCTGTCTCG 58.024 38.462 0.00 0.00 0.00 4.04
4200 4255 9.658799 CCAATTCTATCCGTATGAATTATCTGT 57.341 33.333 0.00 0.00 38.05 3.41
4201 4256 9.875691 TCCAATTCTATCCGTATGAATTATCTG 57.124 33.333 0.00 0.00 38.05 2.90
4209 4264 6.295249 TGCATTTCCAATTCTATCCGTATGA 58.705 36.000 0.00 0.00 0.00 2.15
4210 4265 6.427853 TCTGCATTTCCAATTCTATCCGTATG 59.572 38.462 0.00 0.00 0.00 2.39
4214 4276 5.954296 ATCTGCATTTCCAATTCTATCCG 57.046 39.130 0.00 0.00 0.00 4.18
4223 4285 3.126858 GCAAGACGTATCTGCATTTCCAA 59.873 43.478 10.25 0.00 34.48 3.53
4230 4292 0.608130 ACAGGCAAGACGTATCTGCA 59.392 50.000 15.41 0.00 34.48 4.41
4232 4294 2.654749 TGACAGGCAAGACGTATCTG 57.345 50.000 0.00 0.00 34.48 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.