Multiple sequence alignment - TraesCS5A01G376900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G376900 chr5A 100.000 5561 0 0 1 5561 574486628 574481068 0.000000e+00 10270.0
1 TraesCS5A01G376900 chr5A 85.130 269 39 1 1325 1593 574491136 574490869 1.970000e-69 274.0
2 TraesCS5A01G376900 chr5A 89.076 119 6 4 4108 4223 109442441 109442555 2.090000e-29 141.0
3 TraesCS5A01G376900 chr5A 86.111 72 10 0 3566 3637 525330858 525330787 1.660000e-10 78.7
4 TraesCS5A01G376900 chr5D 93.795 1934 61 10 2162 4085 456621421 456619537 0.000000e+00 2852.0
5 TraesCS5A01G376900 chr5D 90.056 1438 94 22 665 2082 456622826 456621418 0.000000e+00 1818.0
6 TraesCS5A01G376900 chr5D 96.053 456 15 1 4202 4654 456619554 456619099 0.000000e+00 739.0
7 TraesCS5A01G376900 chr5D 84.463 354 16 12 48 392 456623495 456623172 4.180000e-81 313.0
8 TraesCS5A01G376900 chr5D 92.308 91 7 0 2075 2165 267842672 267842762 4.520000e-26 130.0
9 TraesCS5A01G376900 chr5B 89.700 1932 131 28 2162 4085 558407445 558405574 0.000000e+00 2403.0
10 TraesCS5A01G376900 chr5B 88.146 1451 85 31 665 2082 558408838 558407442 0.000000e+00 1646.0
11 TraesCS5A01G376900 chr5B 92.573 377 25 3 4266 4640 558405570 558405195 6.340000e-149 538.0
12 TraesCS5A01G376900 chr5B 91.071 280 14 6 118 392 558409492 558409219 8.800000e-98 368.0
13 TraesCS5A01G376900 chr5B 85.502 269 38 1 1325 1593 558420388 558420121 4.240000e-71 279.0
14 TraesCS5A01G376900 chr5B 89.109 101 11 0 2080 2180 429030693 429030593 5.850000e-25 126.0
15 TraesCS5A01G376900 chr5B 92.500 40 2 1 1 40 558409707 558409745 7.780000e-04 56.5
16 TraesCS5A01G376900 chr7A 93.414 911 58 2 4648 5556 383546980 383546070 0.000000e+00 1349.0
17 TraesCS5A01G376900 chr7A 95.294 85 4 0 2081 2165 129877023 129876939 9.720000e-28 135.0
18 TraesCS5A01G376900 chr1A 93.217 914 60 2 4648 5559 450754532 450755445 0.000000e+00 1343.0
19 TraesCS5A01G376900 chr1A 92.739 909 66 0 4653 5561 135627441 135626533 0.000000e+00 1314.0
20 TraesCS5A01G376900 chr1A 92.022 915 71 2 4649 5561 431804070 431804984 0.000000e+00 1284.0
21 TraesCS5A01G376900 chr1A 91.969 909 70 3 4648 5554 373045728 373046635 0.000000e+00 1271.0
22 TraesCS5A01G376900 chr1A 92.222 90 7 0 2077 2166 48977253 48977164 1.630000e-25 128.0
23 TraesCS5A01G376900 chr1A 86.301 73 10 0 3565 3637 434874699 434874627 4.620000e-11 80.5
24 TraesCS5A01G376900 chr6A 92.409 909 67 2 4648 5554 91079411 91080319 0.000000e+00 1295.0
25 TraesCS5A01G376900 chr6A 92.249 916 66 4 4648 5561 452792353 452793265 0.000000e+00 1293.0
26 TraesCS5A01G376900 chr6A 91.939 918 70 4 4647 5561 422653614 422654530 0.000000e+00 1282.0
27 TraesCS5A01G376900 chr6A 90.435 115 9 2 4108 4222 542337864 542337976 3.470000e-32 150.0
28 TraesCS5A01G376900 chr6A 88.095 126 10 5 4108 4231 484161869 484161747 1.610000e-30 145.0
29 TraesCS5A01G376900 chr6A 92.632 95 6 1 2072 2165 27342989 27342895 9.720000e-28 135.0
30 TraesCS5A01G376900 chr4A 92.580 903 64 3 4653 5554 350775014 350774114 0.000000e+00 1293.0
31 TraesCS5A01G376900 chr4A 96.471 85 3 0 2081 2165 464687280 464687364 2.090000e-29 141.0
32 TraesCS5A01G376900 chr4A 92.473 93 7 0 2073 2165 712733702 712733794 3.500000e-27 134.0
33 TraesCS5A01G376900 chr3A 95.876 97 4 0 4108 4204 415236266 415236170 2.070000e-34 158.0
34 TraesCS5A01G376900 chrUn 90.678 118 5 5 4108 4221 69251975 69251860 9.650000e-33 152.0
35 TraesCS5A01G376900 chrUn 95.294 85 4 0 2081 2165 135090802 135090718 9.720000e-28 135.0
36 TraesCS5A01G376900 chrUn 95.294 85 4 0 2081 2165 152687658 152687574 9.720000e-28 135.0
37 TraesCS5A01G376900 chrUn 93.103 87 6 0 2080 2166 27127742 27127828 1.630000e-25 128.0
38 TraesCS5A01G376900 chrUn 93.023 86 6 0 2080 2165 224653394 224653309 5.850000e-25 126.0
39 TraesCS5A01G376900 chrUn 91.209 91 8 0 2075 2165 23900847 23900937 2.100000e-24 124.0
40 TraesCS5A01G376900 chrUn 92.045 88 7 0 2078 2165 62590478 62590391 2.100000e-24 124.0
41 TraesCS5A01G376900 chrUn 92.941 85 6 0 2081 2165 241299467 241299383 2.100000e-24 124.0
42 TraesCS5A01G376900 chrUn 92.941 85 6 0 2081 2165 317309701 317309617 2.100000e-24 124.0
43 TraesCS5A01G376900 chrUn 92.941 85 6 0 2081 2165 326861676 326861592 2.100000e-24 124.0
44 TraesCS5A01G376900 chrUn 90.323 93 9 0 2076 2168 94824141 94824233 7.570000e-24 122.0
45 TraesCS5A01G376900 chrUn 90.323 93 9 0 2081 2173 119047627 119047535 7.570000e-24 122.0
46 TraesCS5A01G376900 chrUn 87.037 108 12 2 2060 2165 17148706 17148599 2.720000e-23 121.0
47 TraesCS5A01G376900 chr4D 93.204 103 7 0 4108 4210 362613286 362613184 9.650000e-33 152.0
48 TraesCS5A01G376900 chr4D 91.579 95 8 0 2071 2165 24455895 24455801 1.260000e-26 132.0
49 TraesCS5A01G376900 chr4D 93.023 86 6 0 2081 2166 182071800 182071715 5.850000e-25 126.0
50 TraesCS5A01G376900 chr4D 86.667 75 10 0 3563 3637 149318373 149318447 3.570000e-12 84.2
51 TraesCS5A01G376900 chr1B 94.681 94 5 0 4108 4201 151200806 151200899 4.490000e-31 147.0
52 TraesCS5A01G376900 chr1B 93.617 94 6 0 2073 2166 322104639 322104546 2.090000e-29 141.0
53 TraesCS5A01G376900 chr1B 94.318 88 5 0 2078 2165 129095891 129095804 9.720000e-28 135.0
54 TraesCS5A01G376900 chr1B 90.526 95 9 0 2071 2165 61100053 61100147 5.850000e-25 126.0
55 TraesCS5A01G376900 chr2B 88.430 121 12 1 4108 4226 306549158 306549038 1.610000e-30 145.0
56 TraesCS5A01G376900 chr2A 88.000 125 7 6 4108 4229 83305589 83305470 2.090000e-29 141.0
57 TraesCS5A01G376900 chr2A 92.000 100 3 5 2077 2174 81534106 81534202 9.720000e-28 135.0
58 TraesCS5A01G376900 chr2A 91.579 95 8 0 2072 2166 71793887 71793793 1.260000e-26 132.0
59 TraesCS5A01G376900 chr6B 95.349 86 4 0 2080 2165 607208217 607208132 2.700000e-28 137.0
60 TraesCS5A01G376900 chr7B 95.294 85 4 0 2082 2166 312542096 312542180 9.720000e-28 135.0
61 TraesCS5A01G376900 chr7B 91.579 95 7 1 2072 2165 462238651 462238745 4.520000e-26 130.0
62 TraesCS5A01G376900 chr3B 91.579 95 8 0 2074 2168 430513626 430513720 1.260000e-26 132.0
63 TraesCS5A01G376900 chr4B 91.489 94 8 0 2072 2165 179437351 179437444 4.520000e-26 130.0
64 TraesCS5A01G376900 chr1D 93.182 88 6 0 2079 2166 477184235 477184322 4.520000e-26 130.0
65 TraesCS5A01G376900 chr1D 92.135 89 7 0 2077 2165 60286378 60286466 5.850000e-25 126.0
66 TraesCS5A01G376900 chr6D 91.398 93 7 1 2081 2173 84071916 84071825 5.850000e-25 126.0
67 TraesCS5A01G376900 chr6D 87.850 107 9 4 2073 2176 295270388 295270493 7.570000e-24 122.0
68 TraesCS5A01G376900 chr2D 92.135 89 7 0 2078 2166 422331552 422331640 5.850000e-25 126.0
69 TraesCS5A01G376900 chr3D 95.652 46 2 0 514 559 558222067 558222022 2.150000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G376900 chr5A 574481068 574486628 5560 True 10270.00 10270 100.00000 1 5561 1 chr5A.!!$R2 5560
1 TraesCS5A01G376900 chr5D 456619099 456623495 4396 True 1430.50 2852 91.09175 48 4654 4 chr5D.!!$R1 4606
2 TraesCS5A01G376900 chr5B 558405195 558409492 4297 True 1238.75 2403 90.37250 118 4640 4 chr5B.!!$R3 4522
3 TraesCS5A01G376900 chr7A 383546070 383546980 910 True 1349.00 1349 93.41400 4648 5556 1 chr7A.!!$R2 908
4 TraesCS5A01G376900 chr1A 450754532 450755445 913 False 1343.00 1343 93.21700 4648 5559 1 chr1A.!!$F3 911
5 TraesCS5A01G376900 chr1A 135626533 135627441 908 True 1314.00 1314 92.73900 4653 5561 1 chr1A.!!$R2 908
6 TraesCS5A01G376900 chr1A 431804070 431804984 914 False 1284.00 1284 92.02200 4649 5561 1 chr1A.!!$F2 912
7 TraesCS5A01G376900 chr1A 373045728 373046635 907 False 1271.00 1271 91.96900 4648 5554 1 chr1A.!!$F1 906
8 TraesCS5A01G376900 chr6A 91079411 91080319 908 False 1295.00 1295 92.40900 4648 5554 1 chr6A.!!$F1 906
9 TraesCS5A01G376900 chr6A 452792353 452793265 912 False 1293.00 1293 92.24900 4648 5561 1 chr6A.!!$F3 913
10 TraesCS5A01G376900 chr6A 422653614 422654530 916 False 1282.00 1282 91.93900 4647 5561 1 chr6A.!!$F2 914
11 TraesCS5A01G376900 chr4A 350774114 350775014 900 True 1293.00 1293 92.58000 4653 5554 1 chr4A.!!$R1 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 962 0.178767 TGCGATGGAGGAAGACCATG 59.821 55.0 0.00 0.00 46.48 3.66 F
763 963 0.465705 GCGATGGAGGAAGACCATGA 59.534 55.0 0.00 0.00 46.48 3.07 F
1597 1814 0.742505 CACTTGCATGGGTATGGCAG 59.257 55.0 4.44 0.00 34.79 4.85 F
1866 2097 0.981183 TCAGGTCGGGTGCTTACAAT 59.019 50.0 0.00 0.00 0.00 2.71 F
3664 3906 0.914644 ATCTGGCAAGGCTAGCTTGA 59.085 50.0 22.90 8.29 37.07 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1782 1.074405 TGCAAGTGAAGCCTCCAAGAT 59.926 47.619 0.0 0.0 0.00 2.40 R
1837 2068 1.202651 ACCCGACCTGAACAAACAGAG 60.203 52.381 0.0 0.0 39.94 3.35 R
3179 3419 0.652592 CGCGAGCACCAAATAAGAGG 59.347 55.000 0.0 0.0 0.00 3.69 R
3743 3986 1.318251 GCATCGACGCAACAAGAAAC 58.682 50.000 0.0 0.0 0.00 2.78 R
5136 5387 0.395862 AGACGGAGGTCATCGTGGAT 60.396 55.000 0.0 0.0 45.92 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.632377 ACCGCTTACATCAATGTGAGG 58.368 47.619 14.50 8.69 42.61 3.86
22 23 1.331756 CCGCTTACATCAATGTGAGGC 59.668 52.381 14.50 10.29 42.61 4.70
23 24 1.004610 CGCTTACATCAATGTGAGGCG 60.005 52.381 14.50 16.15 42.61 5.52
24 25 2.009774 GCTTACATCAATGTGAGGCGT 58.990 47.619 14.50 0.00 42.61 5.68
25 26 2.223112 GCTTACATCAATGTGAGGCGTG 60.223 50.000 14.50 0.00 42.61 5.34
26 27 1.368641 TACATCAATGTGAGGCGTGC 58.631 50.000 5.89 0.00 41.89 5.34
27 28 0.321919 ACATCAATGTGAGGCGTGCT 60.322 50.000 0.00 0.00 40.03 4.40
28 29 1.066215 ACATCAATGTGAGGCGTGCTA 60.066 47.619 0.00 0.00 40.03 3.49
29 30 1.596260 CATCAATGTGAGGCGTGCTAG 59.404 52.381 0.00 0.00 0.00 3.42
30 31 0.894835 TCAATGTGAGGCGTGCTAGA 59.105 50.000 0.00 0.00 0.00 2.43
31 32 1.482182 TCAATGTGAGGCGTGCTAGAT 59.518 47.619 0.00 0.00 0.00 1.98
32 33 2.693074 TCAATGTGAGGCGTGCTAGATA 59.307 45.455 0.00 0.00 0.00 1.98
33 34 3.055591 CAATGTGAGGCGTGCTAGATAG 58.944 50.000 0.00 0.00 0.00 2.08
34 35 2.052782 TGTGAGGCGTGCTAGATAGA 57.947 50.000 0.00 0.00 0.00 1.98
35 36 2.587522 TGTGAGGCGTGCTAGATAGAT 58.412 47.619 0.00 0.00 0.00 1.98
36 37 2.294512 TGTGAGGCGTGCTAGATAGATG 59.705 50.000 0.00 0.00 0.00 2.90
37 38 1.270826 TGAGGCGTGCTAGATAGATGC 59.729 52.381 0.00 0.00 0.00 3.91
38 39 0.605589 AGGCGTGCTAGATAGATGCC 59.394 55.000 0.00 11.51 36.94 4.40
39 40 0.605589 GGCGTGCTAGATAGATGCCT 59.394 55.000 0.00 0.00 35.14 4.75
40 41 1.403514 GGCGTGCTAGATAGATGCCTC 60.404 57.143 0.00 0.00 35.14 4.70
41 42 1.403514 GCGTGCTAGATAGATGCCTCC 60.404 57.143 0.00 0.00 0.00 4.30
42 43 2.166829 CGTGCTAGATAGATGCCTCCT 58.833 52.381 0.00 0.00 0.00 3.69
43 44 2.094803 CGTGCTAGATAGATGCCTCCTG 60.095 54.545 0.00 0.00 0.00 3.86
44 45 1.898472 TGCTAGATAGATGCCTCCTGC 59.102 52.381 0.00 0.00 41.77 4.85
45 46 1.206849 GCTAGATAGATGCCTCCTGCC 59.793 57.143 0.00 0.00 40.16 4.85
46 47 1.830477 CTAGATAGATGCCTCCTGCCC 59.170 57.143 0.00 0.00 40.16 5.36
73 74 0.608130 AGTTGAGAGTGGCGTATGCA 59.392 50.000 9.59 0.00 45.35 3.96
74 75 1.002366 GTTGAGAGTGGCGTATGCAG 58.998 55.000 9.59 0.00 45.35 4.41
75 76 0.894835 TTGAGAGTGGCGTATGCAGA 59.105 50.000 9.59 0.00 45.35 4.26
76 77 0.457443 TGAGAGTGGCGTATGCAGAG 59.543 55.000 9.59 0.00 45.35 3.35
77 78 0.741326 GAGAGTGGCGTATGCAGAGA 59.259 55.000 9.59 0.00 45.35 3.10
78 79 0.743688 AGAGTGGCGTATGCAGAGAG 59.256 55.000 9.59 0.00 45.35 3.20
79 80 0.873743 GAGTGGCGTATGCAGAGAGC 60.874 60.000 9.59 0.00 45.35 4.09
113 114 3.047877 GTCCCGGACCAAAGCACG 61.048 66.667 0.73 0.00 0.00 5.34
114 115 4.323477 TCCCGGACCAAAGCACGG 62.323 66.667 0.73 0.00 45.57 4.94
115 116 4.636435 CCCGGACCAAAGCACGGT 62.636 66.667 0.73 0.00 44.57 4.83
120 121 2.954753 GACCAAAGCACGGTCGCAG 61.955 63.158 3.77 0.00 43.36 5.18
145 146 1.583054 GTCGTCAGTCAGGCTTGTTT 58.417 50.000 0.00 0.00 0.00 2.83
146 147 1.261619 GTCGTCAGTCAGGCTTGTTTG 59.738 52.381 0.00 0.00 0.00 2.93
147 148 1.134521 TCGTCAGTCAGGCTTGTTTGT 60.135 47.619 0.00 0.00 0.00 2.83
148 149 1.670811 CGTCAGTCAGGCTTGTTTGTT 59.329 47.619 0.00 0.00 0.00 2.83
163 164 3.020984 GTTTGTTCCTTCACTCCACCAA 58.979 45.455 0.00 0.00 0.00 3.67
182 183 3.383761 CAAACACCAGAAATCTGTTGCC 58.616 45.455 7.76 0.00 39.62 4.52
222 223 0.313672 GTGCCATGGAACGAAGCAAA 59.686 50.000 18.40 0.00 34.79 3.68
230 234 2.690497 TGGAACGAAGCAAACCAATCAA 59.310 40.909 0.00 0.00 0.00 2.57
231 235 3.320541 TGGAACGAAGCAAACCAATCAAT 59.679 39.130 0.00 0.00 0.00 2.57
232 236 3.920412 GGAACGAAGCAAACCAATCAATC 59.080 43.478 0.00 0.00 0.00 2.67
233 237 4.545610 GAACGAAGCAAACCAATCAATCA 58.454 39.130 0.00 0.00 0.00 2.57
237 241 3.308438 AGCAAACCAATCAATCACAGC 57.692 42.857 0.00 0.00 0.00 4.40
238 242 2.028748 AGCAAACCAATCAATCACAGCC 60.029 45.455 0.00 0.00 0.00 4.85
242 246 2.596346 ACCAATCAATCACAGCCACAA 58.404 42.857 0.00 0.00 0.00 3.33
253 257 3.047877 GCCACAAGGTCGTTCCCG 61.048 66.667 0.00 0.00 37.19 5.14
264 268 2.284405 GTTCCCGGTCCTCCTCCA 60.284 66.667 0.00 0.00 0.00 3.86
266 270 3.918328 TTCCCGGTCCTCCTCCACC 62.918 68.421 0.00 0.00 0.00 4.61
325 344 2.761160 GAACCCCCATCCACGGTT 59.239 61.111 0.00 0.00 42.58 4.44
377 396 1.923356 TTTGATTGGCTCCCAACTCC 58.077 50.000 0.00 0.00 46.95 3.85
392 411 4.155709 CCAACTCCTCCATCTCTATGCTA 58.844 47.826 0.00 0.00 0.00 3.49
393 412 4.590647 CCAACTCCTCCATCTCTATGCTAA 59.409 45.833 0.00 0.00 0.00 3.09
394 413 5.248020 CCAACTCCTCCATCTCTATGCTAAT 59.752 44.000 0.00 0.00 0.00 1.73
396 415 5.902760 ACTCCTCCATCTCTATGCTAATCT 58.097 41.667 0.00 0.00 0.00 2.40
397 416 6.322126 ACTCCTCCATCTCTATGCTAATCTT 58.678 40.000 0.00 0.00 0.00 2.40
398 417 6.786959 ACTCCTCCATCTCTATGCTAATCTTT 59.213 38.462 0.00 0.00 0.00 2.52
399 418 7.952930 ACTCCTCCATCTCTATGCTAATCTTTA 59.047 37.037 0.00 0.00 0.00 1.85
400 419 8.907829 TCCTCCATCTCTATGCTAATCTTTAT 57.092 34.615 0.00 0.00 0.00 1.40
401 420 9.997172 TCCTCCATCTCTATGCTAATCTTTATA 57.003 33.333 0.00 0.00 0.00 0.98
413 432 8.932945 TGCTAATCTTTATAAGTGTGTGAGAG 57.067 34.615 0.00 0.00 0.00 3.20
415 434 9.372369 GCTAATCTTTATAAGTGTGTGAGAGTT 57.628 33.333 0.00 0.00 0.00 3.01
419 438 8.818141 TCTTTATAAGTGTGTGAGAGTTTCAG 57.182 34.615 0.00 0.00 36.21 3.02
420 439 8.638873 TCTTTATAAGTGTGTGAGAGTTTCAGA 58.361 33.333 0.00 0.00 36.21 3.27
432 605 7.121550 GTGAGAGTTTCAGACTTTCAGTCACA 61.122 42.308 6.67 0.00 46.55 3.58
449 624 4.753107 AGTCACATACTTTTTGTACGGTGG 59.247 41.667 0.00 0.00 38.87 4.61
450 625 4.512571 GTCACATACTTTTTGTACGGTGGT 59.487 41.667 0.00 0.00 38.87 4.16
451 626 4.512198 TCACATACTTTTTGTACGGTGGTG 59.488 41.667 0.00 0.00 38.87 4.17
452 627 3.816523 ACATACTTTTTGTACGGTGGTGG 59.183 43.478 0.00 0.00 33.45 4.61
453 628 1.682740 ACTTTTTGTACGGTGGTGGG 58.317 50.000 0.00 0.00 0.00 4.61
461 636 0.838608 TACGGTGGTGGGTTTGTTCT 59.161 50.000 0.00 0.00 0.00 3.01
478 653 0.975556 TCTTACAGCAGGCCGGATCA 60.976 55.000 5.05 0.00 0.00 2.92
486 661 2.202987 GGCCGGATCAGCTCACAG 60.203 66.667 5.05 0.00 0.00 3.66
502 677 5.788450 GCTCACAGCTGAATATATGGTACT 58.212 41.667 23.35 0.00 38.45 2.73
503 678 5.866633 GCTCACAGCTGAATATATGGTACTC 59.133 44.000 23.35 0.00 38.45 2.59
504 679 6.346477 TCACAGCTGAATATATGGTACTCC 57.654 41.667 23.35 0.00 0.00 3.85
505 680 5.246203 TCACAGCTGAATATATGGTACTCCC 59.754 44.000 23.35 0.00 0.00 4.30
506 681 5.247110 CACAGCTGAATATATGGTACTCCCT 59.753 44.000 23.35 0.00 0.00 4.20
507 682 5.846714 ACAGCTGAATATATGGTACTCCCTT 59.153 40.000 23.35 0.00 0.00 3.95
508 683 6.014156 ACAGCTGAATATATGGTACTCCCTTC 60.014 42.308 23.35 0.00 0.00 3.46
509 684 5.186021 AGCTGAATATATGGTACTCCCTTCG 59.814 44.000 0.00 0.00 0.00 3.79
510 685 5.185249 GCTGAATATATGGTACTCCCTTCGA 59.815 44.000 0.00 0.00 0.00 3.71
511 686 6.585695 TGAATATATGGTACTCCCTTCGAC 57.414 41.667 0.00 0.00 0.00 4.20
512 687 5.479375 TGAATATATGGTACTCCCTTCGACC 59.521 44.000 0.00 0.00 0.00 4.79
513 688 2.832643 TATGGTACTCCCTTCGACCA 57.167 50.000 0.00 0.00 45.70 4.02
514 689 1.946984 ATGGTACTCCCTTCGACCAA 58.053 50.000 0.00 0.00 44.83 3.67
515 690 1.719529 TGGTACTCCCTTCGACCAAA 58.280 50.000 0.00 0.00 39.01 3.28
516 691 1.621814 TGGTACTCCCTTCGACCAAAG 59.378 52.381 0.00 0.00 39.01 2.77
517 692 1.622312 GGTACTCCCTTCGACCAAAGT 59.378 52.381 0.00 0.00 31.89 2.66
518 693 2.038164 GGTACTCCCTTCGACCAAAGTT 59.962 50.000 0.00 0.00 31.89 2.66
519 694 2.256117 ACTCCCTTCGACCAAAGTTG 57.744 50.000 0.00 0.00 0.00 3.16
520 695 1.489230 ACTCCCTTCGACCAAAGTTGT 59.511 47.619 0.00 0.00 0.00 3.32
521 696 2.701951 ACTCCCTTCGACCAAAGTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
522 697 3.064931 CTCCCTTCGACCAAAGTTGTAC 58.935 50.000 0.00 0.00 0.00 2.90
523 698 2.701951 TCCCTTCGACCAAAGTTGTACT 59.298 45.455 0.00 0.00 0.00 2.73
524 699 3.896888 TCCCTTCGACCAAAGTTGTACTA 59.103 43.478 0.00 0.00 0.00 1.82
525 700 4.021719 TCCCTTCGACCAAAGTTGTACTAG 60.022 45.833 0.00 0.00 0.00 2.57
526 701 4.021719 CCCTTCGACCAAAGTTGTACTAGA 60.022 45.833 0.00 0.00 0.00 2.43
527 702 5.162075 CCTTCGACCAAAGTTGTACTAGAG 58.838 45.833 0.00 0.00 0.00 2.43
528 703 4.170292 TCGACCAAAGTTGTACTAGAGC 57.830 45.455 0.00 0.00 0.00 4.09
529 704 3.825014 TCGACCAAAGTTGTACTAGAGCT 59.175 43.478 0.00 0.00 0.00 4.09
530 705 3.921021 CGACCAAAGTTGTACTAGAGCTG 59.079 47.826 0.00 0.00 0.00 4.24
531 706 3.665190 ACCAAAGTTGTACTAGAGCTGC 58.335 45.455 0.00 0.00 0.00 5.25
532 707 3.071023 ACCAAAGTTGTACTAGAGCTGCA 59.929 43.478 1.02 0.00 0.00 4.41
533 708 3.681897 CCAAAGTTGTACTAGAGCTGCAG 59.318 47.826 10.11 10.11 0.00 4.41
534 709 2.663826 AGTTGTACTAGAGCTGCAGC 57.336 50.000 31.53 31.53 42.49 5.25
535 710 1.895798 AGTTGTACTAGAGCTGCAGCA 59.104 47.619 38.24 18.87 45.16 4.41
536 711 2.300152 AGTTGTACTAGAGCTGCAGCAA 59.700 45.455 38.24 22.51 45.16 3.91
537 712 3.055530 AGTTGTACTAGAGCTGCAGCAAT 60.056 43.478 38.24 27.66 45.16 3.56
538 713 3.616956 TGTACTAGAGCTGCAGCAATT 57.383 42.857 38.24 24.74 45.16 2.32
539 714 4.736126 TGTACTAGAGCTGCAGCAATTA 57.264 40.909 38.24 24.54 45.16 1.40
540 715 5.084818 TGTACTAGAGCTGCAGCAATTAA 57.915 39.130 38.24 18.34 45.16 1.40
541 716 5.674525 TGTACTAGAGCTGCAGCAATTAAT 58.325 37.500 38.24 18.66 45.16 1.40
542 717 6.115446 TGTACTAGAGCTGCAGCAATTAATT 58.885 36.000 38.24 17.87 45.16 1.40
543 718 6.599244 TGTACTAGAGCTGCAGCAATTAATTT 59.401 34.615 38.24 17.06 45.16 1.82
544 719 5.888105 ACTAGAGCTGCAGCAATTAATTTG 58.112 37.500 38.24 19.57 45.16 2.32
545 720 4.119442 AGAGCTGCAGCAATTAATTTGG 57.881 40.909 38.24 0.00 45.16 3.28
546 721 3.118884 AGAGCTGCAGCAATTAATTTGGG 60.119 43.478 38.24 0.00 45.16 4.12
547 722 2.568509 AGCTGCAGCAATTAATTTGGGT 59.431 40.909 38.24 11.97 45.16 4.51
548 723 2.931969 GCTGCAGCAATTAATTTGGGTC 59.068 45.455 33.36 0.00 41.59 4.46
549 724 3.181397 CTGCAGCAATTAATTTGGGTCG 58.819 45.455 0.00 0.00 35.75 4.79
550 725 2.094286 TGCAGCAATTAATTTGGGTCGG 60.094 45.455 0.00 0.00 35.75 4.79
551 726 2.165437 GCAGCAATTAATTTGGGTCGGA 59.835 45.455 0.00 0.00 35.75 4.55
554 729 2.100749 GCAATTAATTTGGGTCGGAGGG 59.899 50.000 0.00 0.00 35.75 4.30
572 747 2.296792 GGGAGTACCTACTTCGGAGTC 58.703 57.143 0.00 0.00 36.50 3.36
573 748 1.939255 GGAGTACCTACTTCGGAGTCG 59.061 57.143 0.00 0.00 36.50 4.18
605 780 4.806936 CCTTCAGGCTTCAGCACA 57.193 55.556 0.30 0.00 44.36 4.57
606 781 3.025924 CCTTCAGGCTTCAGCACAA 57.974 52.632 0.30 0.00 44.36 3.33
608 783 1.544093 CCTTCAGGCTTCAGCACAAGA 60.544 52.381 0.30 0.00 44.36 3.02
609 784 2.224606 CTTCAGGCTTCAGCACAAGAA 58.775 47.619 0.30 0.00 44.36 2.52
610 785 2.346766 TCAGGCTTCAGCACAAGAAA 57.653 45.000 0.30 0.00 44.36 2.52
611 786 1.949525 TCAGGCTTCAGCACAAGAAAC 59.050 47.619 0.30 0.00 44.36 2.78
612 787 1.677576 CAGGCTTCAGCACAAGAAACA 59.322 47.619 0.30 0.00 44.36 2.83
617 817 3.364764 GCTTCAGCACAAGAAACAGCTAG 60.365 47.826 0.00 0.00 41.59 3.42
619 819 1.198637 CAGCACAAGAAACAGCTAGCC 59.801 52.381 12.13 0.00 35.19 3.93
622 822 2.294512 GCACAAGAAACAGCTAGCCTTT 59.705 45.455 12.13 9.43 0.00 3.11
631 831 4.422073 ACAGCTAGCCTTTATGCATACA 57.578 40.909 12.13 0.00 0.00 2.29
632 832 4.384056 ACAGCTAGCCTTTATGCATACAG 58.616 43.478 12.13 12.15 0.00 2.74
633 833 3.188048 CAGCTAGCCTTTATGCATACAGC 59.812 47.826 12.13 12.62 45.96 4.40
651 851 7.919091 GCATACAGCATACTAGTAACAACTACA 59.081 37.037 6.70 0.00 44.79 2.74
652 852 9.967346 CATACAGCATACTAGTAACAACTACAT 57.033 33.333 6.70 0.00 32.37 2.29
654 854 8.928270 ACAGCATACTAGTAACAACTACATTC 57.072 34.615 6.70 0.00 32.37 2.67
655 855 8.528643 ACAGCATACTAGTAACAACTACATTCA 58.471 33.333 6.70 0.00 32.37 2.57
656 856 9.025020 CAGCATACTAGTAACAACTACATTCAG 57.975 37.037 6.70 0.00 32.37 3.02
657 857 8.750298 AGCATACTAGTAACAACTACATTCAGT 58.250 33.333 6.70 0.00 32.37 3.41
658 858 9.367444 GCATACTAGTAACAACTACATTCAGTT 57.633 33.333 6.70 0.00 39.34 3.16
662 862 9.924650 ACTAGTAACAACTACATTCAGTTTAGG 57.075 33.333 0.00 0.00 36.61 2.69
663 863 7.668525 AGTAACAACTACATTCAGTTTAGGC 57.331 36.000 0.00 0.00 36.61 3.93
664 864 7.450903 AGTAACAACTACATTCAGTTTAGGCT 58.549 34.615 0.00 0.00 36.61 4.58
666 866 6.803154 ACAACTACATTCAGTTTAGGCTTC 57.197 37.500 0.00 0.00 36.61 3.86
667 867 6.296026 ACAACTACATTCAGTTTAGGCTTCA 58.704 36.000 0.00 0.00 36.61 3.02
668 868 6.428159 ACAACTACATTCAGTTTAGGCTTCAG 59.572 38.462 0.00 0.00 36.61 3.02
679 879 7.170320 TCAGTTTAGGCTTCAGTTTAGTTTACG 59.830 37.037 0.00 0.00 0.00 3.18
682 882 3.497262 AGGCTTCAGTTTAGTTTACGTGC 59.503 43.478 0.00 0.00 0.00 5.34
697 897 1.070445 GTGCCTGCACACTCTGAGT 59.930 57.895 16.95 4.06 45.53 3.41
698 898 0.948141 GTGCCTGCACACTCTGAGTC 60.948 60.000 16.95 0.00 45.53 3.36
699 899 1.117749 TGCCTGCACACTCTGAGTCT 61.118 55.000 7.49 0.00 0.00 3.24
700 900 0.669932 GCCTGCACACTCTGAGTCTG 60.670 60.000 7.49 8.06 0.00 3.51
701 901 0.964700 CCTGCACACTCTGAGTCTGA 59.035 55.000 15.95 0.00 0.00 3.27
702 902 1.336702 CCTGCACACTCTGAGTCTGAC 60.337 57.143 15.95 8.40 0.00 3.51
742 942 2.162208 TCATTCGCTTTGCAATCTGTCC 59.838 45.455 0.00 0.00 0.00 4.02
746 946 0.455633 GCTTTGCAATCTGTCCTGCG 60.456 55.000 0.00 0.00 41.63 5.18
747 947 1.159285 CTTTGCAATCTGTCCTGCGA 58.841 50.000 0.00 0.00 41.63 5.10
748 948 1.741706 CTTTGCAATCTGTCCTGCGAT 59.258 47.619 0.00 0.00 41.63 4.58
749 949 1.089112 TTGCAATCTGTCCTGCGATG 58.911 50.000 0.00 0.00 41.63 3.84
757 957 0.614697 TGTCCTGCGATGGAGGAAGA 60.615 55.000 8.72 0.00 41.42 2.87
760 960 1.617018 CCTGCGATGGAGGAAGACCA 61.617 60.000 0.00 0.00 41.83 4.02
762 962 0.178767 TGCGATGGAGGAAGACCATG 59.821 55.000 0.00 0.00 46.48 3.66
763 963 0.465705 GCGATGGAGGAAGACCATGA 59.534 55.000 0.00 0.00 46.48 3.07
792 992 5.363562 TGGCATTCTAGATTCATCACTGT 57.636 39.130 0.00 0.00 0.00 3.55
794 994 6.283694 TGGCATTCTAGATTCATCACTGTAC 58.716 40.000 0.00 0.00 0.00 2.90
815 1016 2.659757 CGCTTCATCTTGCACAAACATG 59.340 45.455 0.00 0.00 0.00 3.21
818 1019 4.304110 CTTCATCTTGCACAAACATGCTT 58.696 39.130 0.00 0.00 46.28 3.91
872 1080 8.811994 TGTATACAGCAAGTCATATTGGCTATA 58.188 33.333 0.08 0.00 28.54 1.31
880 1088 6.884280 AGTCATATTGGCTATACTTTTGGC 57.116 37.500 0.00 0.00 25.47 4.52
886 1094 4.417426 TGGCTATACTTTTGGCCTCTAC 57.583 45.455 3.32 0.00 44.36 2.59
897 1105 6.657541 ACTTTTGGCCTCTACGAATGATTTTA 59.342 34.615 3.32 0.00 0.00 1.52
985 1200 2.687935 TGGTGTTCAAGCAAAAGACTCC 59.312 45.455 0.00 0.00 32.00 3.85
1128 1343 4.319177 AGCTCAACCTACTGTCATTTGTC 58.681 43.478 0.00 0.00 0.00 3.18
1153 1368 2.890766 TTGGTTCGGGAGGAGTGGC 61.891 63.158 0.00 0.00 0.00 5.01
1219 1434 2.472909 GGCATGCTAACCGGCTCAC 61.473 63.158 18.92 0.00 0.00 3.51
1220 1435 1.450312 GCATGCTAACCGGCTCACT 60.450 57.895 11.37 0.00 0.00 3.41
1252 1467 5.880332 GGCTTTGTTTCTGACAGATATGGTA 59.120 40.000 5.87 0.00 39.94 3.25
1280 1495 3.011566 TGAAGCACTTCCCTGTTTCAA 57.988 42.857 7.88 0.00 38.13 2.69
1281 1496 3.565307 TGAAGCACTTCCCTGTTTCAAT 58.435 40.909 7.88 0.00 38.13 2.57
1308 1523 8.579850 TTTTCAGTACAGGCATTTCTGAATAT 57.420 30.769 12.95 0.00 42.18 1.28
1311 1526 7.512130 TCAGTACAGGCATTTCTGAATATGAT 58.488 34.615 13.22 0.00 38.11 2.45
1399 1616 2.116238 ACTAGCGGAATGGGCTTCTTA 58.884 47.619 0.00 0.00 41.80 2.10
1423 1640 2.290896 TGCCTGGTCTCCCAACTATTTG 60.291 50.000 0.00 0.00 41.27 2.32
1432 1649 4.701651 TCTCCCAACTATTTGTGCTTGATG 59.298 41.667 0.00 0.00 0.00 3.07
1465 1682 2.753043 GTCGGCGTAGGAGTGGGA 60.753 66.667 6.85 0.00 0.00 4.37
1597 1814 0.742505 CACTTGCATGGGTATGGCAG 59.257 55.000 4.44 0.00 34.79 4.85
1634 1855 6.376018 GGCCCTTTAGTGTTGTGAATTATACA 59.624 38.462 0.00 0.00 0.00 2.29
1636 1857 7.915397 GCCCTTTAGTGTTGTGAATTATACATG 59.085 37.037 0.00 0.00 0.00 3.21
1728 1953 9.632969 GCGTCACAACAAATATTAAGTATGTAG 57.367 33.333 0.00 0.00 0.00 2.74
1759 1986 9.851686 ATAAGCAAGGATATAAGAACATGACAA 57.148 29.630 0.00 0.00 0.00 3.18
1760 1987 8.579850 AAGCAAGGATATAAGAACATGACAAA 57.420 30.769 0.00 0.00 0.00 2.83
1761 1988 8.757982 AGCAAGGATATAAGAACATGACAAAT 57.242 30.769 0.00 0.00 0.00 2.32
1762 1989 8.844244 AGCAAGGATATAAGAACATGACAAATC 58.156 33.333 0.00 0.00 0.00 2.17
1763 1990 8.623903 GCAAGGATATAAGAACATGACAAATCA 58.376 33.333 0.00 0.00 39.83 2.57
1766 1993 9.347240 AGGATATAAGAACATGACAAATCAAGG 57.653 33.333 0.00 0.00 38.69 3.61
1767 1994 9.125026 GGATATAAGAACATGACAAATCAAGGT 57.875 33.333 0.00 0.00 38.69 3.50
1798 2029 8.928270 AAACCACAAGTATAGATAAAGAGACG 57.072 34.615 0.00 0.00 0.00 4.18
1804 2035 6.710597 AGTATAGATAAAGAGACGCCACAA 57.289 37.500 0.00 0.00 0.00 3.33
1806 2037 7.727181 AGTATAGATAAAGAGACGCCACAAAT 58.273 34.615 0.00 0.00 0.00 2.32
1807 2038 8.857098 AGTATAGATAAAGAGACGCCACAAATA 58.143 33.333 0.00 0.00 0.00 1.40
1808 2039 7.948278 ATAGATAAAGAGACGCCACAAATAC 57.052 36.000 0.00 0.00 0.00 1.89
1809 2040 5.978814 AGATAAAGAGACGCCACAAATACT 58.021 37.500 0.00 0.00 0.00 2.12
1810 2041 7.108841 AGATAAAGAGACGCCACAAATACTA 57.891 36.000 0.00 0.00 0.00 1.82
1811 2042 7.553334 AGATAAAGAGACGCCACAAATACTAA 58.447 34.615 0.00 0.00 0.00 2.24
1812 2043 7.707035 AGATAAAGAGACGCCACAAATACTAAG 59.293 37.037 0.00 0.00 0.00 2.18
1813 2044 4.803098 AGAGACGCCACAAATACTAAGT 57.197 40.909 0.00 0.00 0.00 2.24
1814 2045 5.909621 AGAGACGCCACAAATACTAAGTA 57.090 39.130 0.00 0.00 0.00 2.24
1815 2046 5.892568 AGAGACGCCACAAATACTAAGTAG 58.107 41.667 0.00 0.00 0.00 2.57
1816 2047 5.418209 AGAGACGCCACAAATACTAAGTAGT 59.582 40.000 0.00 0.00 40.24 2.73
1833 2064 8.038944 ACTAAGTAGTGTGTCAACTGAAAGAAA 58.961 33.333 0.00 0.00 34.28 2.52
1834 2065 6.663944 AGTAGTGTGTCAACTGAAAGAAAC 57.336 37.500 0.00 0.00 37.43 2.78
1837 2068 6.124088 AGTGTGTCAACTGAAAGAAACATC 57.876 37.500 0.00 0.00 37.43 3.06
1866 2097 0.981183 TCAGGTCGGGTGCTTACAAT 59.019 50.000 0.00 0.00 0.00 2.71
1896 2127 7.254852 TGTAGAAGTGAATTTGTGTTGGTTTC 58.745 34.615 0.00 0.00 0.00 2.78
1931 2162 4.946160 AATCCATTCCTTCCCAAGTGTA 57.054 40.909 0.00 0.00 0.00 2.90
1934 2165 3.053693 TCCATTCCTTCCCAAGTGTATGG 60.054 47.826 0.00 0.00 40.35 2.74
2086 2317 9.482627 CTATTATCTGAATTGACAAGTACTCCC 57.517 37.037 0.00 0.00 0.00 4.30
2087 2318 7.496346 TTATCTGAATTGACAAGTACTCCCT 57.504 36.000 0.00 0.00 0.00 4.20
2088 2319 5.407407 TCTGAATTGACAAGTACTCCCTC 57.593 43.478 0.00 0.00 0.00 4.30
2089 2320 5.087323 TCTGAATTGACAAGTACTCCCTCT 58.913 41.667 0.00 0.00 0.00 3.69
2090 2321 5.047021 TCTGAATTGACAAGTACTCCCTCTG 60.047 44.000 0.00 0.00 0.00 3.35
2091 2322 4.593206 TGAATTGACAAGTACTCCCTCTGT 59.407 41.667 0.00 0.00 0.00 3.41
2092 2323 4.810191 ATTGACAAGTACTCCCTCTGTC 57.190 45.455 14.93 14.93 0.00 3.51
2093 2324 2.526432 TGACAAGTACTCCCTCTGTCC 58.474 52.381 17.77 5.24 0.00 4.02
2094 2325 1.826096 GACAAGTACTCCCTCTGTCCC 59.174 57.143 11.91 0.00 0.00 4.46
2095 2326 1.149288 ACAAGTACTCCCTCTGTCCCA 59.851 52.381 0.00 0.00 0.00 4.37
2096 2327 2.225650 ACAAGTACTCCCTCTGTCCCAT 60.226 50.000 0.00 0.00 0.00 4.00
2097 2328 3.012502 ACAAGTACTCCCTCTGTCCCATA 59.987 47.826 0.00 0.00 0.00 2.74
2098 2329 4.030913 CAAGTACTCCCTCTGTCCCATAA 58.969 47.826 0.00 0.00 0.00 1.90
2099 2330 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2100 2331 4.227197 AGTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
2101 2332 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
2102 2333 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
2103 2334 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
2104 2335 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
2105 2336 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
2106 2337 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
2107 2338 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
2108 2339 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
2109 2340 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
2110 2341 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
2111 2342 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
2112 2343 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
2158 2389 8.848474 AAAATGTCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
2159 2390 7.792364 AATGTCTTATATTATGGGACGGAGA 57.208 36.000 0.00 0.00 0.00 3.71
2160 2391 6.835819 TGTCTTATATTATGGGACGGAGAG 57.164 41.667 0.00 0.00 0.00 3.20
2161 2392 6.549242 TGTCTTATATTATGGGACGGAGAGA 58.451 40.000 0.00 0.00 0.00 3.10
2162 2393 6.659668 TGTCTTATATTATGGGACGGAGAGAG 59.340 42.308 0.00 0.00 0.00 3.20
2163 2394 6.660094 GTCTTATATTATGGGACGGAGAGAGT 59.340 42.308 0.00 0.00 0.00 3.24
2164 2395 7.828223 GTCTTATATTATGGGACGGAGAGAGTA 59.172 40.741 0.00 0.00 0.00 2.59
2181 2412 7.557719 GGAGAGAGTAAAAATGAATGGGAATGA 59.442 37.037 0.00 0.00 0.00 2.57
2183 2414 7.066284 AGAGAGTAAAAATGAATGGGAATGACG 59.934 37.037 0.00 0.00 0.00 4.35
2227 2458 5.521372 TGTGATTTCATCTTGTGCTATCTCG 59.479 40.000 0.00 0.00 0.00 4.04
2233 2464 6.391227 TCATCTTGTGCTATCTCGTATCAA 57.609 37.500 0.00 0.00 0.00 2.57
2269 2502 5.913514 CACAGCTCAACTTTGATTTTCTCAG 59.086 40.000 0.00 0.00 36.46 3.35
2270 2503 5.824624 ACAGCTCAACTTTGATTTTCTCAGA 59.175 36.000 0.00 0.00 36.46 3.27
2271 2504 6.319658 ACAGCTCAACTTTGATTTTCTCAGAA 59.680 34.615 0.00 0.00 36.46 3.02
2272 2505 7.148018 ACAGCTCAACTTTGATTTTCTCAGAAA 60.148 33.333 0.00 0.00 36.46 2.52
2273 2506 7.703621 CAGCTCAACTTTGATTTTCTCAGAAAA 59.296 33.333 14.99 14.99 36.46 2.29
2274 2507 8.253113 AGCTCAACTTTGATTTTCTCAGAAAAA 58.747 29.630 16.52 0.00 36.46 1.94
2328 2561 5.947228 CTGATGCTCAGTTAAACTTTGGA 57.053 39.130 5.34 0.00 39.58 3.53
2340 2573 8.081633 CAGTTAAACTTTGGACTGATGCATTTA 58.918 33.333 0.00 0.00 41.46 1.40
2622 2855 3.099905 CTCCTGGAGTTCTCACATACCA 58.900 50.000 15.76 0.00 0.00 3.25
2640 2873 2.946990 ACCACCGTGAAAGTAAAGTTGG 59.053 45.455 0.00 0.00 0.00 3.77
2894 3133 3.658398 CCATCTGGGCTGACAAACT 57.342 52.632 0.00 0.00 0.00 2.66
2941 3180 6.888088 ACCTTTACAGGGATACATTTGTTACC 59.112 38.462 0.00 0.00 46.01 2.85
2971 3210 5.580661 GCAGGTAGCTTACAGTAAGTCTAC 58.419 45.833 26.96 26.96 40.54 2.59
3069 3309 3.069586 TCCTGGTCTAATTGTATCTGCCG 59.930 47.826 0.00 0.00 0.00 5.69
3092 3332 1.818060 CTTGTTGAATGGATTGGCCGA 59.182 47.619 0.00 0.00 40.66 5.54
3179 3419 2.548480 GGATGAGCTATTTACAACGGCC 59.452 50.000 0.00 0.00 0.00 6.13
3183 3423 1.838077 AGCTATTTACAACGGCCCTCT 59.162 47.619 0.00 0.00 0.00 3.69
3188 3428 5.298527 GCTATTTACAACGGCCCTCTTATTT 59.701 40.000 0.00 0.00 0.00 1.40
3292 3532 2.378038 AGCAAGTGCACTTCTTTTCCA 58.622 42.857 28.97 0.00 45.16 3.53
3378 3620 9.868277 GAATGTTACATTCATCCATTTAACCAA 57.132 29.630 27.19 0.00 0.00 3.67
3413 3655 7.489574 TGGTGGTTTTCATTATTCTTTTTGC 57.510 32.000 0.00 0.00 0.00 3.68
3418 3660 7.984050 TGGTTTTCATTATTCTTTTTGCTGTGA 59.016 29.630 0.00 0.00 0.00 3.58
3437 3679 6.756542 GCTGTGACAAGGTAGTTTTGATTTTT 59.243 34.615 0.00 0.00 0.00 1.94
3476 3718 3.941483 AGTTTTCCATTCATCACGCTAGG 59.059 43.478 0.00 0.00 0.00 3.02
3585 3827 8.522830 CCTTCTAGTTCATTTTTCTTGCCAATA 58.477 33.333 0.00 0.00 0.00 1.90
3664 3906 0.914644 ATCTGGCAAGGCTAGCTTGA 59.085 50.000 22.90 8.29 37.07 3.02
3701 3944 8.581578 ACACACCCCTAATACAAATAAAACTTG 58.418 33.333 0.00 0.00 0.00 3.16
3737 3980 3.986572 CGCTATGAAACTCATGCTAGGAG 59.013 47.826 0.00 0.00 37.70 3.69
3743 3986 5.188434 TGAAACTCATGCTAGGAGGATTTG 58.812 41.667 0.00 0.00 36.70 2.32
3765 4008 0.882484 TCTTGTTGCGTCGATGCCAA 60.882 50.000 26.06 20.86 0.00 4.52
3807 4050 3.475566 TGCATGAGGGCAGTAATACTC 57.524 47.619 0.00 0.00 39.25 2.59
3880 4123 7.008021 TGCTTATCTTGCCAGATATACATGA 57.992 36.000 8.24 0.00 40.97 3.07
3891 4134 6.091849 GCCAGATATACATGATGTGCTAACTG 59.908 42.308 8.61 12.59 0.00 3.16
3910 4153 3.181454 ACTGTAAAGACCCCTGAACACAG 60.181 47.826 0.00 0.00 38.44 3.66
3974 4218 8.570488 CAACATCCTAATTGCAGCTAATGATAA 58.430 33.333 0.00 0.00 0.00 1.75
3975 4219 8.874744 ACATCCTAATTGCAGCTAATGATAAT 57.125 30.769 0.00 0.00 0.00 1.28
3976 4220 9.964354 ACATCCTAATTGCAGCTAATGATAATA 57.036 29.630 0.00 0.00 0.00 0.98
4062 4306 2.485426 GCTCTTCATTGCTGCAACACTA 59.515 45.455 18.51 2.88 0.00 2.74
4064 4308 4.730035 GCTCTTCATTGCTGCAACACTATC 60.730 45.833 18.51 1.17 0.00 2.08
4066 4310 3.354948 TCATTGCTGCAACACTATCCT 57.645 42.857 18.51 0.00 0.00 3.24
4068 4312 3.691118 TCATTGCTGCAACACTATCCTTC 59.309 43.478 18.51 0.00 0.00 3.46
4069 4313 2.113860 TGCTGCAACACTATCCTTCC 57.886 50.000 0.00 0.00 0.00 3.46
4070 4314 1.350684 TGCTGCAACACTATCCTTCCA 59.649 47.619 0.00 0.00 0.00 3.53
4071 4315 2.012673 GCTGCAACACTATCCTTCCAG 58.987 52.381 0.00 0.00 0.00 3.86
4072 4316 2.355108 GCTGCAACACTATCCTTCCAGA 60.355 50.000 0.00 0.00 0.00 3.86
4073 4317 3.265791 CTGCAACACTATCCTTCCAGAC 58.734 50.000 0.00 0.00 0.00 3.51
4074 4318 2.906389 TGCAACACTATCCTTCCAGACT 59.094 45.455 0.00 0.00 0.00 3.24
4075 4319 3.055819 TGCAACACTATCCTTCCAGACTC 60.056 47.826 0.00 0.00 0.00 3.36
4076 4320 3.055819 GCAACACTATCCTTCCAGACTCA 60.056 47.826 0.00 0.00 0.00 3.41
4077 4321 4.563580 GCAACACTATCCTTCCAGACTCAA 60.564 45.833 0.00 0.00 0.00 3.02
4078 4322 5.738909 CAACACTATCCTTCCAGACTCAAT 58.261 41.667 0.00 0.00 0.00 2.57
4079 4323 6.176183 CAACACTATCCTTCCAGACTCAATT 58.824 40.000 0.00 0.00 0.00 2.32
4080 4324 6.380079 ACACTATCCTTCCAGACTCAATTT 57.620 37.500 0.00 0.00 0.00 1.82
4081 4325 6.176183 ACACTATCCTTCCAGACTCAATTTG 58.824 40.000 0.00 0.00 0.00 2.32
4082 4326 6.176183 CACTATCCTTCCAGACTCAATTTGT 58.824 40.000 0.00 0.00 0.00 2.83
4083 4327 6.656693 CACTATCCTTCCAGACTCAATTTGTT 59.343 38.462 0.00 0.00 0.00 2.83
4084 4328 7.175641 CACTATCCTTCCAGACTCAATTTGTTT 59.824 37.037 0.00 0.00 0.00 2.83
4085 4329 6.983906 ATCCTTCCAGACTCAATTTGTTTT 57.016 33.333 0.00 0.00 0.00 2.43
4086 4330 6.790232 TCCTTCCAGACTCAATTTGTTTTT 57.210 33.333 0.00 0.00 0.00 1.94
4116 4360 6.738352 CAGAAAGACTGTAATGCAACAAAC 57.262 37.500 0.00 0.00 41.30 2.93
4117 4361 6.498304 CAGAAAGACTGTAATGCAACAAACT 58.502 36.000 0.00 0.00 41.30 2.66
4118 4362 6.634436 CAGAAAGACTGTAATGCAACAAACTC 59.366 38.462 0.00 0.00 41.30 3.01
4119 4363 6.318648 AGAAAGACTGTAATGCAACAAACTCA 59.681 34.615 0.00 0.00 0.00 3.41
4120 4364 6.449635 AAGACTGTAATGCAACAAACTCAA 57.550 33.333 0.00 0.00 0.00 3.02
4121 4365 6.449635 AGACTGTAATGCAACAAACTCAAA 57.550 33.333 0.00 0.00 0.00 2.69
4122 4366 7.042797 AGACTGTAATGCAACAAACTCAAAT 57.957 32.000 0.00 0.00 0.00 2.32
4123 4367 7.491682 AGACTGTAATGCAACAAACTCAAATT 58.508 30.769 0.00 0.00 0.00 1.82
4124 4368 7.436080 AGACTGTAATGCAACAAACTCAAATTG 59.564 33.333 0.00 0.00 0.00 2.32
4125 4369 6.018832 ACTGTAATGCAACAAACTCAAATTGC 60.019 34.615 0.00 0.94 46.08 3.56
4129 4373 4.863152 GCAACAAACTCAAATTGCAAGT 57.137 36.364 4.94 0.00 45.38 3.16
4130 4374 5.964887 GCAACAAACTCAAATTGCAAGTA 57.035 34.783 4.94 0.00 45.38 2.24
4131 4375 5.727249 GCAACAAACTCAAATTGCAAGTAC 58.273 37.500 4.94 0.00 45.38 2.73
4132 4376 5.276820 GCAACAAACTCAAATTGCAAGTACC 60.277 40.000 4.94 0.00 45.38 3.34
4133 4377 5.590530 ACAAACTCAAATTGCAAGTACCA 57.409 34.783 4.94 0.00 0.00 3.25
4134 4378 6.160576 ACAAACTCAAATTGCAAGTACCAT 57.839 33.333 4.94 0.00 0.00 3.55
4135 4379 5.984926 ACAAACTCAAATTGCAAGTACCATG 59.015 36.000 4.94 0.00 0.00 3.66
4136 4380 5.789643 AACTCAAATTGCAAGTACCATGT 57.210 34.783 4.94 0.00 0.00 3.21
4137 4381 5.789643 ACTCAAATTGCAAGTACCATGTT 57.210 34.783 4.94 0.00 0.00 2.71
4138 4382 6.160576 ACTCAAATTGCAAGTACCATGTTT 57.839 33.333 4.94 0.00 0.00 2.83
4139 4383 6.581712 ACTCAAATTGCAAGTACCATGTTTT 58.418 32.000 4.94 0.00 0.00 2.43
4140 4384 6.479660 ACTCAAATTGCAAGTACCATGTTTTG 59.520 34.615 4.94 7.59 0.00 2.44
4141 4385 6.577103 TCAAATTGCAAGTACCATGTTTTGA 58.423 32.000 12.59 12.59 0.00 2.69
4142 4386 7.044181 TCAAATTGCAAGTACCATGTTTTGAA 58.956 30.769 13.71 2.42 30.23 2.69
4143 4387 6.843069 AATTGCAAGTACCATGTTTTGAAC 57.157 33.333 4.94 0.00 0.00 3.18
4144 4388 4.314740 TGCAAGTACCATGTTTTGAACC 57.685 40.909 0.00 0.00 0.00 3.62
4145 4389 3.957497 TGCAAGTACCATGTTTTGAACCT 59.043 39.130 0.00 0.00 0.00 3.50
4146 4390 4.202101 TGCAAGTACCATGTTTTGAACCTG 60.202 41.667 0.00 0.00 0.00 4.00
4150 4394 2.818130 CCATGTTTTGAACCTGGGTG 57.182 50.000 0.00 0.00 41.71 4.61
4151 4395 2.315176 CCATGTTTTGAACCTGGGTGA 58.685 47.619 0.00 0.00 41.71 4.02
4152 4396 2.297033 CCATGTTTTGAACCTGGGTGAG 59.703 50.000 0.00 0.00 41.71 3.51
4153 4397 2.818751 TGTTTTGAACCTGGGTGAGT 57.181 45.000 0.00 0.00 0.00 3.41
4154 4398 2.374184 TGTTTTGAACCTGGGTGAGTG 58.626 47.619 0.00 0.00 0.00 3.51
4155 4399 1.681264 GTTTTGAACCTGGGTGAGTGG 59.319 52.381 0.00 0.00 0.00 4.00
4156 4400 0.184933 TTTGAACCTGGGTGAGTGGG 59.815 55.000 0.00 0.00 0.00 4.61
4157 4401 0.696143 TTGAACCTGGGTGAGTGGGA 60.696 55.000 0.00 0.00 0.00 4.37
4158 4402 0.696143 TGAACCTGGGTGAGTGGGAA 60.696 55.000 0.00 0.00 0.00 3.97
4159 4403 0.036875 GAACCTGGGTGAGTGGGAAG 59.963 60.000 0.00 0.00 0.00 3.46
4160 4404 1.427072 AACCTGGGTGAGTGGGAAGG 61.427 60.000 0.00 0.00 0.00 3.46
4161 4405 2.352805 CTGGGTGAGTGGGAAGGC 59.647 66.667 0.00 0.00 0.00 4.35
4162 4406 2.449518 TGGGTGAGTGGGAAGGCA 60.450 61.111 0.00 0.00 0.00 4.75
4163 4407 1.852157 TGGGTGAGTGGGAAGGCAT 60.852 57.895 0.00 0.00 0.00 4.40
4164 4408 1.379044 GGGTGAGTGGGAAGGCATG 60.379 63.158 0.00 0.00 0.00 4.06
4165 4409 1.685224 GGTGAGTGGGAAGGCATGA 59.315 57.895 0.00 0.00 0.00 3.07
4166 4410 0.393537 GGTGAGTGGGAAGGCATGAG 60.394 60.000 0.00 0.00 0.00 2.90
4167 4411 1.028868 GTGAGTGGGAAGGCATGAGC 61.029 60.000 0.00 0.00 41.10 4.26
4177 4421 2.440980 GCATGAGCCCCTTCCCAC 60.441 66.667 0.00 0.00 33.58 4.61
4178 4422 2.276740 CATGAGCCCCTTCCCACC 59.723 66.667 0.00 0.00 0.00 4.61
4179 4423 2.204291 ATGAGCCCCTTCCCACCA 60.204 61.111 0.00 0.00 0.00 4.17
4180 4424 2.616458 ATGAGCCCCTTCCCACCAC 61.616 63.158 0.00 0.00 0.00 4.16
4181 4425 2.936032 GAGCCCCTTCCCACCACT 60.936 66.667 0.00 0.00 0.00 4.00
4182 4426 1.615424 GAGCCCCTTCCCACCACTA 60.615 63.158 0.00 0.00 0.00 2.74
4183 4427 1.616628 AGCCCCTTCCCACCACTAG 60.617 63.158 0.00 0.00 0.00 2.57
4184 4428 2.680370 GCCCCTTCCCACCACTAGG 61.680 68.421 0.00 0.00 42.21 3.02
4185 4429 2.680370 CCCCTTCCCACCACTAGGC 61.680 68.421 0.00 0.00 39.06 3.93
4186 4430 1.616628 CCCTTCCCACCACTAGGCT 60.617 63.158 0.00 0.00 39.06 4.58
4187 4431 0.326238 CCCTTCCCACCACTAGGCTA 60.326 60.000 0.00 0.00 39.06 3.93
4188 4432 1.695989 CCCTTCCCACCACTAGGCTAT 60.696 57.143 0.00 0.00 39.06 2.97
4189 4433 1.417890 CCTTCCCACCACTAGGCTATG 59.582 57.143 0.00 0.00 39.06 2.23
4190 4434 0.837272 TTCCCACCACTAGGCTATGC 59.163 55.000 0.00 0.00 39.06 3.14
4229 4473 9.086336 CAAACTCAATTTGTTTGTCTGTGTAAT 57.914 29.630 18.46 0.00 45.19 1.89
4241 4485 6.860790 TGTCTGTGTAATACCTGTCCAATA 57.139 37.500 0.00 0.00 0.00 1.90
4272 4516 2.877168 GACCAGGCATTATCTGAAGCAG 59.123 50.000 0.00 0.00 34.36 4.24
4276 4520 4.201990 CCAGGCATTATCTGAAGCAGTTTC 60.202 45.833 0.00 0.00 34.36 2.78
4277 4521 4.397103 CAGGCATTATCTGAAGCAGTTTCA 59.603 41.667 0.00 0.00 43.40 2.69
4452 4700 3.929948 GCTGTCGGCATGCTACGC 61.930 66.667 18.92 17.68 41.35 4.42
4647 4896 7.726291 TGGATTTCTTACATTTTTGGAGGTACA 59.274 33.333 0.00 0.00 0.00 2.90
4649 4898 9.573133 GATTTCTTACATTTTTGGAGGTACATG 57.427 33.333 0.00 0.00 0.00 3.21
4714 4963 1.860078 CGCGCGAAGTCTTTTCCTT 59.140 52.632 28.94 0.00 0.00 3.36
4715 4964 0.234884 CGCGCGAAGTCTTTTCCTTT 59.765 50.000 28.94 0.00 0.00 3.11
4776 5025 1.606350 CTCGACGAACTCGCAACACC 61.606 60.000 0.00 0.00 42.62 4.16
4884 5133 4.883585 GGCTGATGATGAACAATACAAGGA 59.116 41.667 0.00 0.00 0.00 3.36
4903 5152 2.037381 GGAGAAGAACAACCTCCTCGTT 59.963 50.000 0.00 0.00 42.36 3.85
4908 5157 3.881220 AGAACAACCTCCTCGTTTTGAA 58.119 40.909 0.00 0.00 0.00 2.69
4958 5207 0.321919 TGAGTGCTGGATGAACTGCC 60.322 55.000 0.00 0.00 33.85 4.85
4972 5222 4.175337 TGCCCGATGCCCTACTGC 62.175 66.667 0.00 0.00 40.16 4.40
4995 5245 5.299782 GCGGTGGCTAGCTCTACTTATATAT 59.700 44.000 15.72 0.00 35.83 0.86
5030 5280 2.654863 CCCAAATATTGAGCGGGAAGT 58.345 47.619 6.65 0.00 39.44 3.01
5136 5387 1.829096 TGGTGACGTCGTCTTGGGA 60.829 57.895 24.75 2.55 33.15 4.37
5180 5431 2.561419 CGTCCTTCTGGTCTTGGTCTTA 59.439 50.000 0.00 0.00 34.23 2.10
5194 5445 4.681074 TGGTCTTATTGCACCGATATGA 57.319 40.909 0.00 0.00 35.15 2.15
5195 5446 5.227569 TGGTCTTATTGCACCGATATGAT 57.772 39.130 0.00 0.00 35.15 2.45
5197 5448 6.398095 TGGTCTTATTGCACCGATATGATAG 58.602 40.000 0.00 0.00 35.15 2.08
5215 5466 1.679977 GCCTTTGCCTGATGCCTCA 60.680 57.895 0.00 0.00 40.16 3.86
5314 5565 0.589229 CGCCTAGTGTCGATCGTCAC 60.589 60.000 29.88 29.88 35.10 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.792401 CCTCACATTGATGTAAGCGGTA 58.208 45.455 0.00 0.00 39.39 4.02
2 3 1.331756 GCCTCACATTGATGTAAGCGG 59.668 52.381 0.00 0.00 39.39 5.52
3 4 1.004610 CGCCTCACATTGATGTAAGCG 60.005 52.381 15.34 15.34 42.18 4.68
4 5 2.009774 ACGCCTCACATTGATGTAAGC 58.990 47.619 0.00 0.17 39.39 3.09
6 7 1.737236 GCACGCCTCACATTGATGTAA 59.263 47.619 0.00 0.00 39.39 2.41
7 8 1.066215 AGCACGCCTCACATTGATGTA 60.066 47.619 0.00 0.00 39.39 2.29
8 9 0.321919 AGCACGCCTCACATTGATGT 60.322 50.000 0.00 0.00 42.84 3.06
9 10 1.596260 CTAGCACGCCTCACATTGATG 59.404 52.381 0.00 0.00 0.00 3.07
10 11 1.482182 TCTAGCACGCCTCACATTGAT 59.518 47.619 0.00 0.00 0.00 2.57
11 12 0.894835 TCTAGCACGCCTCACATTGA 59.105 50.000 0.00 0.00 0.00 2.57
12 13 1.945387 ATCTAGCACGCCTCACATTG 58.055 50.000 0.00 0.00 0.00 2.82
13 14 2.959030 TCTATCTAGCACGCCTCACATT 59.041 45.455 0.00 0.00 0.00 2.71
14 15 2.587522 TCTATCTAGCACGCCTCACAT 58.412 47.619 0.00 0.00 0.00 3.21
15 16 2.052782 TCTATCTAGCACGCCTCACA 57.947 50.000 0.00 0.00 0.00 3.58
16 17 2.924454 GCATCTATCTAGCACGCCTCAC 60.924 54.545 0.00 0.00 0.00 3.51
17 18 1.270826 GCATCTATCTAGCACGCCTCA 59.729 52.381 0.00 0.00 0.00 3.86
18 19 1.403514 GGCATCTATCTAGCACGCCTC 60.404 57.143 0.00 0.00 35.17 4.70
19 20 0.605589 GGCATCTATCTAGCACGCCT 59.394 55.000 0.00 0.00 35.17 5.52
20 21 0.605589 AGGCATCTATCTAGCACGCC 59.394 55.000 0.00 0.00 38.36 5.68
21 22 1.403514 GGAGGCATCTATCTAGCACGC 60.404 57.143 0.00 0.00 0.00 5.34
22 23 2.094803 CAGGAGGCATCTATCTAGCACG 60.095 54.545 0.00 0.00 0.00 5.34
23 24 2.353605 GCAGGAGGCATCTATCTAGCAC 60.354 54.545 0.00 0.00 43.97 4.40
24 25 1.898472 GCAGGAGGCATCTATCTAGCA 59.102 52.381 0.00 0.00 43.97 3.49
25 26 2.671130 GCAGGAGGCATCTATCTAGC 57.329 55.000 0.00 0.00 43.97 3.42
43 44 4.832608 CTCAACTACCGGCCGGGC 62.833 72.222 44.99 20.04 40.62 6.13
44 45 3.072468 TCTCAACTACCGGCCGGG 61.072 66.667 44.99 31.45 43.62 5.73
45 46 2.348888 ACTCTCAACTACCGGCCGG 61.349 63.158 42.17 42.17 42.03 6.13
46 47 1.153823 CACTCTCAACTACCGGCCG 60.154 63.158 21.04 21.04 0.00 6.13
54 55 0.608130 TGCATACGCCACTCTCAACT 59.392 50.000 0.00 0.00 37.32 3.16
73 74 3.572539 CTCGCTCGCTCGCTCTCT 61.573 66.667 0.00 0.00 0.00 3.10
76 77 4.921847 ATGCTCGCTCGCTCGCTC 62.922 66.667 0.00 0.00 0.00 5.03
80 81 4.521062 ACCCATGCTCGCTCGCTC 62.521 66.667 0.00 0.00 0.00 5.03
110 111 4.678269 ACGACGTCTGCGACCGTG 62.678 66.667 14.70 0.00 43.82 4.94
111 112 4.380628 GACGACGTCTGCGACCGT 62.381 66.667 20.52 4.80 46.14 4.83
145 146 2.025793 TGTTTGGTGGAGTGAAGGAACA 60.026 45.455 0.00 0.00 0.00 3.18
146 147 2.357952 GTGTTTGGTGGAGTGAAGGAAC 59.642 50.000 0.00 0.00 0.00 3.62
147 148 2.650322 GTGTTTGGTGGAGTGAAGGAA 58.350 47.619 0.00 0.00 0.00 3.36
148 149 1.133915 GGTGTTTGGTGGAGTGAAGGA 60.134 52.381 0.00 0.00 0.00 3.36
222 223 2.291209 TGTGGCTGTGATTGATTGGT 57.709 45.000 0.00 0.00 0.00 3.67
230 234 0.108585 AACGACCTTGTGGCTGTGAT 59.891 50.000 0.00 0.00 36.63 3.06
231 235 0.531974 GAACGACCTTGTGGCTGTGA 60.532 55.000 0.00 0.00 36.63 3.58
232 236 1.507141 GGAACGACCTTGTGGCTGTG 61.507 60.000 0.00 0.00 36.63 3.66
233 237 1.227853 GGAACGACCTTGTGGCTGT 60.228 57.895 0.00 0.00 36.63 4.40
325 344 2.750637 GGTCGTCAGAGGGAGCGA 60.751 66.667 0.00 0.00 0.00 4.93
392 411 9.778741 TGAAACTCTCACACACTTATAAAGATT 57.221 29.630 0.00 0.00 0.00 2.40
393 412 9.429359 CTGAAACTCTCACACACTTATAAAGAT 57.571 33.333 0.00 0.00 0.00 2.40
394 413 8.638873 TCTGAAACTCTCACACACTTATAAAGA 58.361 33.333 0.00 0.00 0.00 2.52
396 415 8.421784 AGTCTGAAACTCTCACACACTTATAAA 58.578 33.333 0.00 0.00 30.02 1.40
397 416 7.952671 AGTCTGAAACTCTCACACACTTATAA 58.047 34.615 0.00 0.00 30.02 0.98
398 417 7.526142 AGTCTGAAACTCTCACACACTTATA 57.474 36.000 0.00 0.00 30.02 0.98
399 418 6.412362 AGTCTGAAACTCTCACACACTTAT 57.588 37.500 0.00 0.00 30.02 1.73
400 419 5.854010 AGTCTGAAACTCTCACACACTTA 57.146 39.130 0.00 0.00 30.02 2.24
401 420 4.744795 AGTCTGAAACTCTCACACACTT 57.255 40.909 0.00 0.00 30.02 3.16
403 422 4.870426 TGAAAGTCTGAAACTCTCACACAC 59.130 41.667 0.00 0.00 37.17 3.82
405 424 5.649602 CTGAAAGTCTGAAACTCTCACAC 57.350 43.478 0.00 0.00 37.17 3.82
420 439 7.254658 CCGTACAAAAAGTATGTGACTGAAAGT 60.255 37.037 0.00 0.00 43.48 2.66
421 440 7.069569 CCGTACAAAAAGTATGTGACTGAAAG 58.930 38.462 0.00 0.00 38.87 2.62
432 605 3.181441 ACCCACCACCGTACAAAAAGTAT 60.181 43.478 0.00 0.00 34.67 2.12
449 624 2.293399 CCTGCTGTAAGAACAAACCCAC 59.707 50.000 0.00 0.00 34.49 4.61
450 625 2.582052 CCTGCTGTAAGAACAAACCCA 58.418 47.619 0.00 0.00 34.49 4.51
451 626 1.269723 GCCTGCTGTAAGAACAAACCC 59.730 52.381 0.00 0.00 34.49 4.11
452 627 1.269723 GGCCTGCTGTAAGAACAAACC 59.730 52.381 0.00 0.00 34.49 3.27
453 628 1.069227 CGGCCTGCTGTAAGAACAAAC 60.069 52.381 0.00 0.00 34.49 2.93
461 636 1.522092 CTGATCCGGCCTGCTGTAA 59.478 57.895 0.00 0.00 0.00 2.41
478 653 9.144691 GGAGTACCATATATTCAGCTGTGAGCT 62.145 44.444 14.67 0.00 43.89 4.09
486 661 5.185249 TCGAAGGGAGTACCATATATTCAGC 59.815 44.000 0.00 0.00 43.89 4.26
497 672 1.622312 ACTTTGGTCGAAGGGAGTACC 59.378 52.381 0.00 0.00 40.67 3.34
498 673 3.064931 CAACTTTGGTCGAAGGGAGTAC 58.935 50.000 0.00 0.00 0.00 2.73
499 674 2.701951 ACAACTTTGGTCGAAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
500 675 1.489230 ACAACTTTGGTCGAAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
501 676 2.256117 ACAACTTTGGTCGAAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
502 677 2.701951 AGTACAACTTTGGTCGAAGGGA 59.298 45.455 0.00 0.00 0.00 4.20
503 678 3.121738 AGTACAACTTTGGTCGAAGGG 57.878 47.619 0.00 0.00 0.00 3.95
504 679 5.130292 TCTAGTACAACTTTGGTCGAAGG 57.870 43.478 0.00 0.00 0.00 3.46
505 680 4.621886 GCTCTAGTACAACTTTGGTCGAAG 59.378 45.833 0.00 0.00 0.00 3.79
506 681 4.280174 AGCTCTAGTACAACTTTGGTCGAA 59.720 41.667 0.00 0.00 0.00 3.71
507 682 3.825014 AGCTCTAGTACAACTTTGGTCGA 59.175 43.478 0.00 0.00 0.00 4.20
508 683 3.921021 CAGCTCTAGTACAACTTTGGTCG 59.079 47.826 0.00 0.00 0.00 4.79
509 684 3.680458 GCAGCTCTAGTACAACTTTGGTC 59.320 47.826 0.00 0.00 0.00 4.02
510 685 3.071023 TGCAGCTCTAGTACAACTTTGGT 59.929 43.478 0.00 0.00 0.00 3.67
511 686 3.664107 TGCAGCTCTAGTACAACTTTGG 58.336 45.455 0.00 0.00 0.00 3.28
512 687 3.124297 GCTGCAGCTCTAGTACAACTTTG 59.876 47.826 31.33 0.00 38.21 2.77
513 688 3.244215 TGCTGCAGCTCTAGTACAACTTT 60.244 43.478 36.61 0.00 42.66 2.66
514 689 2.300152 TGCTGCAGCTCTAGTACAACTT 59.700 45.455 36.61 0.00 42.66 2.66
515 690 1.895798 TGCTGCAGCTCTAGTACAACT 59.104 47.619 36.61 0.00 42.66 3.16
516 691 2.370281 TGCTGCAGCTCTAGTACAAC 57.630 50.000 36.61 6.43 42.66 3.32
517 692 3.616956 ATTGCTGCAGCTCTAGTACAA 57.383 42.857 36.61 21.41 42.66 2.41
518 693 3.616956 AATTGCTGCAGCTCTAGTACA 57.383 42.857 36.61 13.65 42.66 2.90
519 694 6.610741 AATTAATTGCTGCAGCTCTAGTAC 57.389 37.500 36.61 8.49 42.66 2.73
520 695 6.038603 CCAAATTAATTGCTGCAGCTCTAGTA 59.961 38.462 36.61 22.21 42.66 1.82
521 696 5.163581 CCAAATTAATTGCTGCAGCTCTAGT 60.164 40.000 36.61 23.16 42.66 2.57
522 697 5.279384 CCAAATTAATTGCTGCAGCTCTAG 58.721 41.667 36.61 17.04 42.66 2.43
523 698 4.098349 CCCAAATTAATTGCTGCAGCTCTA 59.902 41.667 36.61 22.92 42.66 2.43
524 699 3.118884 CCCAAATTAATTGCTGCAGCTCT 60.119 43.478 36.61 23.22 42.66 4.09
525 700 3.192466 CCCAAATTAATTGCTGCAGCTC 58.808 45.455 36.61 12.36 42.66 4.09
526 701 2.568509 ACCCAAATTAATTGCTGCAGCT 59.431 40.909 36.61 21.18 42.66 4.24
527 702 2.931969 GACCCAAATTAATTGCTGCAGC 59.068 45.455 31.89 31.89 37.73 5.25
528 703 3.181397 CGACCCAAATTAATTGCTGCAG 58.819 45.455 10.11 10.11 37.73 4.41
529 704 2.094286 CCGACCCAAATTAATTGCTGCA 60.094 45.455 0.39 0.00 37.73 4.41
530 705 2.165437 TCCGACCCAAATTAATTGCTGC 59.835 45.455 0.39 0.00 37.73 5.25
531 706 3.181487 CCTCCGACCCAAATTAATTGCTG 60.181 47.826 0.39 0.00 37.73 4.41
532 707 3.023832 CCTCCGACCCAAATTAATTGCT 58.976 45.455 0.39 0.00 37.73 3.91
533 708 2.100749 CCCTCCGACCCAAATTAATTGC 59.899 50.000 0.39 0.00 37.73 3.56
534 709 3.626930 TCCCTCCGACCCAAATTAATTG 58.373 45.455 0.39 0.00 38.84 2.32
535 710 3.268595 ACTCCCTCCGACCCAAATTAATT 59.731 43.478 0.00 0.00 0.00 1.40
536 711 2.850568 ACTCCCTCCGACCCAAATTAAT 59.149 45.455 0.00 0.00 0.00 1.40
537 712 2.271777 ACTCCCTCCGACCCAAATTAA 58.728 47.619 0.00 0.00 0.00 1.40
538 713 1.961133 ACTCCCTCCGACCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
539 714 1.558294 GTACTCCCTCCGACCCAAATT 59.442 52.381 0.00 0.00 0.00 1.82
540 715 1.201424 GTACTCCCTCCGACCCAAAT 58.799 55.000 0.00 0.00 0.00 2.32
541 716 0.906282 GGTACTCCCTCCGACCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
542 717 1.305549 GGTACTCCCTCCGACCCAA 60.306 63.158 0.00 0.00 0.00 4.12
543 718 0.920763 TAGGTACTCCCTCCGACCCA 60.921 60.000 0.00 0.00 44.81 4.51
544 719 0.467106 GTAGGTACTCCCTCCGACCC 60.467 65.000 0.00 0.00 44.81 4.46
545 720 0.550432 AGTAGGTACTCCCTCCGACC 59.450 60.000 0.00 0.00 44.81 4.79
546 721 2.296792 GAAGTAGGTACTCCCTCCGAC 58.703 57.143 0.00 0.00 44.81 4.79
547 722 1.134280 CGAAGTAGGTACTCCCTCCGA 60.134 57.143 0.00 0.00 44.81 4.55
548 723 1.307097 CGAAGTAGGTACTCCCTCCG 58.693 60.000 0.00 0.00 44.81 4.63
549 724 1.213926 TCCGAAGTAGGTACTCCCTCC 59.786 57.143 0.00 0.00 44.81 4.30
550 725 2.092484 ACTCCGAAGTAGGTACTCCCTC 60.092 54.545 0.00 0.00 44.81 4.30
551 726 5.563749 CGACTCCGAAGTAGGTACTCCCT 62.564 56.522 0.00 0.00 42.28 4.20
554 729 2.898705 TCGACTCCGAAGTAGGTACTC 58.101 52.381 0.00 0.00 42.51 2.59
567 742 0.109226 CAACGAGAGGGTTCGACTCC 60.109 60.000 2.12 0.00 43.03 3.85
568 743 0.109226 CCAACGAGAGGGTTCGACTC 60.109 60.000 2.12 0.00 43.03 3.36
569 744 1.965219 CCAACGAGAGGGTTCGACT 59.035 57.895 2.12 0.00 43.03 4.18
572 747 2.434359 GGCCAACGAGAGGGTTCG 60.434 66.667 0.00 0.00 45.70 3.95
573 748 0.673956 GAAGGCCAACGAGAGGGTTC 60.674 60.000 5.01 0.00 0.00 3.62
576 751 1.078848 CTGAAGGCCAACGAGAGGG 60.079 63.158 5.01 0.00 0.00 4.30
577 752 1.078848 CCTGAAGGCCAACGAGAGG 60.079 63.158 5.01 0.00 0.00 3.69
600 775 1.072965 AGGCTAGCTGTTTCTTGTGCT 59.927 47.619 15.72 0.00 39.30 4.40
601 776 1.528129 AGGCTAGCTGTTTCTTGTGC 58.472 50.000 15.72 0.00 0.00 4.57
603 778 4.156739 GCATAAAGGCTAGCTGTTTCTTGT 59.843 41.667 15.72 3.35 0.00 3.16
604 779 4.156556 TGCATAAAGGCTAGCTGTTTCTTG 59.843 41.667 15.72 15.01 34.04 3.02
605 780 4.335416 TGCATAAAGGCTAGCTGTTTCTT 58.665 39.130 15.72 6.01 34.04 2.52
606 781 3.955471 TGCATAAAGGCTAGCTGTTTCT 58.045 40.909 15.72 5.09 34.04 2.52
608 783 5.192927 TGTATGCATAAAGGCTAGCTGTTT 58.807 37.500 15.72 16.19 34.04 2.83
609 784 4.780815 TGTATGCATAAAGGCTAGCTGTT 58.219 39.130 15.72 11.31 34.04 3.16
610 785 4.384056 CTGTATGCATAAAGGCTAGCTGT 58.616 43.478 15.25 0.00 34.04 4.40
611 786 3.188048 GCTGTATGCATAAAGGCTAGCTG 59.812 47.826 22.72 5.56 42.31 4.24
612 787 3.406764 GCTGTATGCATAAAGGCTAGCT 58.593 45.455 22.72 0.00 42.31 3.32
622 822 8.638873 AGTTGTTACTAGTATGCTGTATGCATA 58.361 33.333 1.16 1.16 45.97 3.14
631 831 8.750298 ACTGAATGTAGTTGTTACTAGTATGCT 58.250 33.333 2.79 2.90 37.53 3.79
632 832 8.928270 ACTGAATGTAGTTGTTACTAGTATGC 57.072 34.615 2.79 0.95 37.53 3.14
644 844 6.428159 ACTGAAGCCTAAACTGAATGTAGTTG 59.572 38.462 0.00 0.00 40.58 3.16
648 848 8.154856 ACTAAACTGAAGCCTAAACTGAATGTA 58.845 33.333 0.00 0.00 0.00 2.29
651 851 8.465273 AAACTAAACTGAAGCCTAAACTGAAT 57.535 30.769 0.00 0.00 0.00 2.57
652 852 7.875327 AAACTAAACTGAAGCCTAAACTGAA 57.125 32.000 0.00 0.00 0.00 3.02
654 854 7.042254 ACGTAAACTAAACTGAAGCCTAAACTG 60.042 37.037 0.00 0.00 0.00 3.16
655 855 6.988580 ACGTAAACTAAACTGAAGCCTAAACT 59.011 34.615 0.00 0.00 0.00 2.66
656 856 7.067728 CACGTAAACTAAACTGAAGCCTAAAC 58.932 38.462 0.00 0.00 0.00 2.01
657 857 6.293027 GCACGTAAACTAAACTGAAGCCTAAA 60.293 38.462 0.00 0.00 0.00 1.85
658 858 5.178067 GCACGTAAACTAAACTGAAGCCTAA 59.822 40.000 0.00 0.00 0.00 2.69
659 859 4.687483 GCACGTAAACTAAACTGAAGCCTA 59.313 41.667 0.00 0.00 0.00 3.93
660 860 3.497262 GCACGTAAACTAAACTGAAGCCT 59.503 43.478 0.00 0.00 0.00 4.58
661 861 3.364664 GGCACGTAAACTAAACTGAAGCC 60.365 47.826 0.00 0.00 0.00 4.35
662 862 3.497262 AGGCACGTAAACTAAACTGAAGC 59.503 43.478 0.00 0.00 0.00 3.86
663 863 4.610680 GCAGGCACGTAAACTAAACTGAAG 60.611 45.833 0.00 0.00 0.00 3.02
664 864 3.249080 GCAGGCACGTAAACTAAACTGAA 59.751 43.478 0.00 0.00 0.00 3.02
666 866 2.546368 TGCAGGCACGTAAACTAAACTG 59.454 45.455 0.00 0.00 0.00 3.16
667 867 2.546789 GTGCAGGCACGTAAACTAAACT 59.453 45.455 8.84 0.00 37.19 2.66
668 868 2.912366 GTGCAGGCACGTAAACTAAAC 58.088 47.619 8.84 0.00 37.19 2.01
679 879 0.948141 GACTCAGAGTGTGCAGGCAC 60.948 60.000 17.11 17.11 46.33 5.01
682 882 0.964700 TCAGACTCAGAGTGTGCAGG 59.035 55.000 20.64 0.05 39.14 4.85
742 942 0.467384 ATGGTCTTCCTCCATCGCAG 59.533 55.000 0.00 0.00 41.21 5.18
746 946 2.106166 AGCATCATGGTCTTCCTCCATC 59.894 50.000 0.00 0.00 42.92 3.51
747 947 2.106166 GAGCATCATGGTCTTCCTCCAT 59.894 50.000 9.72 0.00 45.29 3.41
748 948 1.487976 GAGCATCATGGTCTTCCTCCA 59.512 52.381 9.72 0.00 41.34 3.86
749 949 2.252976 GAGCATCATGGTCTTCCTCC 57.747 55.000 9.72 0.00 41.34 4.30
792 992 2.875317 TGTTTGTGCAAGATGAAGCGTA 59.125 40.909 0.00 0.00 0.00 4.42
794 994 2.404265 TGTTTGTGCAAGATGAAGCG 57.596 45.000 0.00 0.00 0.00 4.68
842 1050 8.783093 GCCAATATGACTTGCTGTATACATTAA 58.217 33.333 5.91 4.12 0.00 1.40
851 1059 6.179906 AGTATAGCCAATATGACTTGCTGT 57.820 37.500 0.00 0.00 0.00 4.40
872 1080 3.695830 TCATTCGTAGAGGCCAAAAGT 57.304 42.857 5.01 0.00 38.43 2.66
880 1088 7.482654 TGCAGAATAAAATCATTCGTAGAGG 57.517 36.000 0.00 0.00 39.45 3.69
886 1094 5.224888 CCCCATGCAGAATAAAATCATTCG 58.775 41.667 0.00 0.00 39.45 3.34
1049 1264 1.270550 CAAGAACAAGCGCCTGGAATT 59.729 47.619 11.35 0.00 0.00 2.17
1153 1368 2.235650 TCTCATCTTGGGCAGAGACTTG 59.764 50.000 0.00 0.00 33.87 3.16
1252 1467 3.054802 CAGGGAAGTGCTTCATACCTTCT 60.055 47.826 13.16 0.00 41.20 2.85
1287 1502 7.741027 ATCATATTCAGAAATGCCTGTACTG 57.259 36.000 0.00 0.00 35.71 2.74
1378 1595 1.789523 AGAAGCCCATTCCGCTAGTA 58.210 50.000 0.00 0.00 38.84 1.82
1423 1640 0.674895 ACCGAAGAGCCATCAAGCAC 60.675 55.000 0.00 0.00 34.23 4.40
1432 1649 1.071567 CGACGAGAAACCGAAGAGCC 61.072 60.000 0.00 0.00 0.00 4.70
1465 1682 2.045926 GAGAACACATGCCCGCCT 60.046 61.111 0.00 0.00 0.00 5.52
1561 1778 4.383118 GCAAGTGAAGCCTCCAAGATAGTA 60.383 45.833 0.00 0.00 0.00 1.82
1564 1781 2.305635 TGCAAGTGAAGCCTCCAAGATA 59.694 45.455 0.00 0.00 0.00 1.98
1565 1782 1.074405 TGCAAGTGAAGCCTCCAAGAT 59.926 47.619 0.00 0.00 0.00 2.40
1597 1814 2.620251 AAAGGGCCACAAAAGAAAGC 57.380 45.000 6.18 0.00 0.00 3.51
1658 1880 8.278639 TCTACCTATAAAATGCATCAGGGAAAA 58.721 33.333 0.00 0.00 0.00 2.29
1751 1978 6.713762 TTCAGAAACCTTGATTTGTCATGT 57.286 33.333 0.00 0.00 0.00 3.21
1777 2004 6.418226 GTGGCGTCTCTTTATCTATACTTGTG 59.582 42.308 0.00 0.00 0.00 3.33
1782 2009 7.948278 ATTTGTGGCGTCTCTTTATCTATAC 57.052 36.000 0.00 0.00 0.00 1.47
1798 2029 5.929992 TGACACACTACTTAGTATTTGTGGC 59.070 40.000 25.16 24.12 38.93 5.01
1804 2035 9.477484 CTTTCAGTTGACACACTACTTAGTATT 57.523 33.333 0.00 0.00 34.13 1.89
1806 2037 8.229253 TCTTTCAGTTGACACACTACTTAGTA 57.771 34.615 0.00 0.00 34.13 1.82
1807 2038 7.108841 TCTTTCAGTTGACACACTACTTAGT 57.891 36.000 0.00 0.00 36.90 2.24
1808 2039 8.328864 GTTTCTTTCAGTTGACACACTACTTAG 58.671 37.037 0.00 0.00 32.79 2.18
1809 2040 7.820386 TGTTTCTTTCAGTTGACACACTACTTA 59.180 33.333 0.00 0.00 32.79 2.24
1810 2041 6.653320 TGTTTCTTTCAGTTGACACACTACTT 59.347 34.615 0.00 0.00 32.79 2.24
1811 2042 6.170506 TGTTTCTTTCAGTTGACACACTACT 58.829 36.000 0.00 0.00 35.19 2.57
1812 2043 6.417191 TGTTTCTTTCAGTTGACACACTAC 57.583 37.500 0.00 0.00 0.00 2.73
1813 2044 7.047891 AGATGTTTCTTTCAGTTGACACACTA 58.952 34.615 0.00 0.00 0.00 2.74
1814 2045 5.882557 AGATGTTTCTTTCAGTTGACACACT 59.117 36.000 0.00 0.00 0.00 3.55
1815 2046 6.037610 AGAGATGTTTCTTTCAGTTGACACAC 59.962 38.462 0.00 0.00 30.30 3.82
1816 2047 6.037500 CAGAGATGTTTCTTTCAGTTGACACA 59.962 38.462 0.00 0.00 30.30 3.72
1833 2064 3.393800 CGACCTGAACAAACAGAGATGT 58.606 45.455 0.00 0.00 39.94 3.06
1834 2065 2.738846 CCGACCTGAACAAACAGAGATG 59.261 50.000 0.00 0.00 39.94 2.90
1837 2068 1.202651 ACCCGACCTGAACAAACAGAG 60.203 52.381 0.00 0.00 39.94 3.35
1866 2097 8.349245 CCAACACAAATTCACTTCTACATACAA 58.651 33.333 0.00 0.00 0.00 2.41
1896 2127 8.517062 AAGGAATGGATTTCAAGACTATGAAG 57.483 34.615 0.00 0.00 40.21 3.02
2132 2363 9.938280 CTCCGTCCCATAATATAAGACATTTTA 57.062 33.333 0.00 0.00 0.00 1.52
2133 2364 8.656806 TCTCCGTCCCATAATATAAGACATTTT 58.343 33.333 0.00 0.00 0.00 1.82
2134 2365 8.202461 TCTCCGTCCCATAATATAAGACATTT 57.798 34.615 0.00 0.00 0.00 2.32
2135 2366 7.674348 TCTCTCCGTCCCATAATATAAGACATT 59.326 37.037 0.00 0.00 0.00 2.71
2136 2367 7.182760 TCTCTCCGTCCCATAATATAAGACAT 58.817 38.462 0.00 0.00 0.00 3.06
2137 2368 6.549242 TCTCTCCGTCCCATAATATAAGACA 58.451 40.000 0.00 0.00 0.00 3.41
2138 2369 6.660094 ACTCTCTCCGTCCCATAATATAAGAC 59.340 42.308 0.00 0.00 0.00 3.01
2139 2370 6.791371 ACTCTCTCCGTCCCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
2140 2371 8.577048 TTACTCTCTCCGTCCCATAATATAAG 57.423 38.462 0.00 0.00 0.00 1.73
2141 2372 8.945195 TTTACTCTCTCCGTCCCATAATATAA 57.055 34.615 0.00 0.00 0.00 0.98
2142 2373 8.945195 TTTTACTCTCTCCGTCCCATAATATA 57.055 34.615 0.00 0.00 0.00 0.86
2143 2374 7.850935 TTTTACTCTCTCCGTCCCATAATAT 57.149 36.000 0.00 0.00 0.00 1.28
2144 2375 7.664552 TTTTTACTCTCTCCGTCCCATAATA 57.335 36.000 0.00 0.00 0.00 0.98
2145 2376 6.555463 TTTTTACTCTCTCCGTCCCATAAT 57.445 37.500 0.00 0.00 0.00 1.28
2146 2377 6.155565 TCATTTTTACTCTCTCCGTCCCATAA 59.844 38.462 0.00 0.00 0.00 1.90
2147 2378 5.659525 TCATTTTTACTCTCTCCGTCCCATA 59.340 40.000 0.00 0.00 0.00 2.74
2148 2379 4.469945 TCATTTTTACTCTCTCCGTCCCAT 59.530 41.667 0.00 0.00 0.00 4.00
2149 2380 3.835978 TCATTTTTACTCTCTCCGTCCCA 59.164 43.478 0.00 0.00 0.00 4.37
2150 2381 4.467198 TCATTTTTACTCTCTCCGTCCC 57.533 45.455 0.00 0.00 0.00 4.46
2151 2382 5.294552 CCATTCATTTTTACTCTCTCCGTCC 59.705 44.000 0.00 0.00 0.00 4.79
2152 2383 5.294552 CCCATTCATTTTTACTCTCTCCGTC 59.705 44.000 0.00 0.00 0.00 4.79
2153 2384 5.045869 TCCCATTCATTTTTACTCTCTCCGT 60.046 40.000 0.00 0.00 0.00 4.69
2154 2385 5.428253 TCCCATTCATTTTTACTCTCTCCG 58.572 41.667 0.00 0.00 0.00 4.63
2155 2386 7.557719 TCATTCCCATTCATTTTTACTCTCTCC 59.442 37.037 0.00 0.00 0.00 3.71
2156 2387 8.401709 GTCATTCCCATTCATTTTTACTCTCTC 58.598 37.037 0.00 0.00 0.00 3.20
2157 2388 7.066284 CGTCATTCCCATTCATTTTTACTCTCT 59.934 37.037 0.00 0.00 0.00 3.10
2158 2389 7.065803 TCGTCATTCCCATTCATTTTTACTCTC 59.934 37.037 0.00 0.00 0.00 3.20
2159 2390 6.884295 TCGTCATTCCCATTCATTTTTACTCT 59.116 34.615 0.00 0.00 0.00 3.24
2160 2391 7.083875 TCGTCATTCCCATTCATTTTTACTC 57.916 36.000 0.00 0.00 0.00 2.59
2161 2392 7.461182 TTCGTCATTCCCATTCATTTTTACT 57.539 32.000 0.00 0.00 0.00 2.24
2162 2393 9.965824 ATATTCGTCATTCCCATTCATTTTTAC 57.034 29.630 0.00 0.00 0.00 2.01
2164 2395 9.533253 GAATATTCGTCATTCCCATTCATTTTT 57.467 29.630 0.00 0.00 0.00 1.94
2227 2458 7.041372 TGAGCTGTGAAGGTAAAAGTTTGATAC 60.041 37.037 0.00 0.00 0.00 2.24
2233 2464 5.193679 AGTTGAGCTGTGAAGGTAAAAGTT 58.806 37.500 0.00 0.00 0.00 2.66
2271 2504 8.496707 ACTTCATGCAGAAAATCAAAGTTTTT 57.503 26.923 0.00 0.00 35.40 1.94
2272 2505 8.496707 AACTTCATGCAGAAAATCAAAGTTTT 57.503 26.923 0.00 0.00 33.26 2.43
2273 2506 8.496707 AAACTTCATGCAGAAAATCAAAGTTT 57.503 26.923 0.00 4.30 39.54 2.66
2274 2507 9.598517 TTAAACTTCATGCAGAAAATCAAAGTT 57.401 25.926 0.00 0.00 37.32 2.66
2275 2508 9.598517 TTTAAACTTCATGCAGAAAATCAAAGT 57.401 25.926 0.00 0.00 35.40 2.66
2285 2518 9.844790 CATCAGTTATTTTAAACTTCATGCAGA 57.155 29.630 0.00 0.00 37.61 4.26
2286 2519 8.589629 GCATCAGTTATTTTAAACTTCATGCAG 58.410 33.333 17.56 0.00 44.11 4.41
2287 2520 8.306038 AGCATCAGTTATTTTAAACTTCATGCA 58.694 29.630 21.27 0.00 45.44 3.96
2288 2521 8.693542 AGCATCAGTTATTTTAAACTTCATGC 57.306 30.769 15.99 15.99 44.52 4.06
2289 2522 9.844790 TGAGCATCAGTTATTTTAAACTTCATG 57.155 29.630 0.00 0.00 42.56 3.07
2324 2557 3.669536 TGTCGTAAATGCATCAGTCCAA 58.330 40.909 0.00 0.00 0.00 3.53
2328 2561 9.075519 CAAATAAAATGTCGTAAATGCATCAGT 57.924 29.630 0.00 0.00 0.00 3.41
2340 2573 9.959749 AAACATAAGTCACAAATAAAATGTCGT 57.040 25.926 0.00 0.00 0.00 4.34
2622 2855 2.356695 GTGCCAACTTTACTTTCACGGT 59.643 45.455 0.00 0.00 0.00 4.83
2640 2873 2.423892 TCGGTCTCAGATGTAAGAGTGC 59.576 50.000 0.00 0.00 33.63 4.40
2892 3131 2.996621 GCATCTTCTTGACGCTGTAAGT 59.003 45.455 0.00 0.00 35.30 2.24
2893 3132 3.257393 AGCATCTTCTTGACGCTGTAAG 58.743 45.455 0.00 0.00 43.11 2.34
2894 3133 3.319137 AGCATCTTCTTGACGCTGTAA 57.681 42.857 0.00 0.00 43.11 2.41
2964 3203 4.757149 GTCATCAGGCAACAAAGTAGACTT 59.243 41.667 0.00 0.00 41.41 3.01
2967 3206 4.318332 CAGTCATCAGGCAACAAAGTAGA 58.682 43.478 0.00 0.00 41.41 2.59
2971 3210 1.068055 GGCAGTCATCAGGCAACAAAG 60.068 52.381 0.00 0.00 41.41 2.77
3012 3252 9.845740 AACATCAGTACATATATTTGTTAGCCA 57.154 29.630 4.06 0.00 0.00 4.75
3029 3269 5.604758 CAGGAATCTCTGGAACATCAGTA 57.395 43.478 0.00 0.00 38.20 2.74
3069 3309 3.588955 GGCCAATCCATTCAACAAGAAC 58.411 45.455 0.00 0.00 39.49 3.01
3092 3332 3.056607 GCATGGACCACATTGTAGCTTTT 60.057 43.478 0.00 0.00 37.84 2.27
3168 3408 3.759618 CCAAATAAGAGGGCCGTTGTAAA 59.240 43.478 0.00 0.00 0.00 2.01
3179 3419 0.652592 CGCGAGCACCAAATAAGAGG 59.347 55.000 0.00 0.00 0.00 3.69
3292 3532 5.891551 AGGACACTGTAAAAACCAAGACAAT 59.108 36.000 0.00 0.00 0.00 2.71
3384 3626 9.625747 AAAAGAATAATGAAAACCACCATTTGT 57.374 25.926 0.00 0.00 35.02 2.83
3413 3655 9.796120 TTAAAAATCAAAACTACCTTGTCACAG 57.204 29.630 0.00 0.00 0.00 3.66
3476 3718 5.823045 AGGAGATGATTAATTTCAACCCGTC 59.177 40.000 0.00 0.00 0.00 4.79
3585 3827 2.224719 GCTAGTCCATGATCTGGCCAAT 60.225 50.000 7.01 3.18 45.52 3.16
3664 3906 1.710809 AGGGGTGTGTTGGATTTAGCT 59.289 47.619 0.00 0.00 0.00 3.32
3737 3980 2.719046 CGACGCAACAAGAAACAAATCC 59.281 45.455 0.00 0.00 0.00 3.01
3743 3986 1.318251 GCATCGACGCAACAAGAAAC 58.682 50.000 0.00 0.00 0.00 2.78
3805 4048 3.153369 TGGATGCTCTAGCTAGGAGAG 57.847 52.381 20.58 13.76 42.89 3.20
3807 4050 4.888326 AAATGGATGCTCTAGCTAGGAG 57.112 45.455 20.58 16.15 42.66 3.69
3880 4123 3.587506 AGGGGTCTTTACAGTTAGCACAT 59.412 43.478 0.00 0.00 0.00 3.21
3891 4134 3.487120 ACTGTGTTCAGGGGTCTTTAC 57.513 47.619 0.47 0.00 45.14 2.01
3988 4232 7.469537 AGATATTTTCTCCCTATCCACTACG 57.530 40.000 0.00 0.00 0.00 3.51
4062 4306 6.983906 AAAACAAATTGAGTCTGGAAGGAT 57.016 33.333 0.00 0.00 0.00 3.24
4094 4338 6.318648 TGAGTTTGTTGCATTACAGTCTTTCT 59.681 34.615 0.00 0.00 0.00 2.52
4095 4339 6.494842 TGAGTTTGTTGCATTACAGTCTTTC 58.505 36.000 0.00 0.00 0.00 2.62
4096 4340 6.449635 TGAGTTTGTTGCATTACAGTCTTT 57.550 33.333 0.00 0.00 0.00 2.52
4097 4341 6.449635 TTGAGTTTGTTGCATTACAGTCTT 57.550 33.333 0.00 0.00 0.00 3.01
4098 4342 6.449635 TTTGAGTTTGTTGCATTACAGTCT 57.550 33.333 0.00 0.00 0.00 3.24
4099 4343 7.558137 CAATTTGAGTTTGTTGCATTACAGTC 58.442 34.615 0.00 0.00 0.00 3.51
4100 4344 6.018832 GCAATTTGAGTTTGTTGCATTACAGT 60.019 34.615 0.00 0.00 44.63 3.55
4101 4345 6.357198 GCAATTTGAGTTTGTTGCATTACAG 58.643 36.000 0.00 0.00 44.63 2.74
4102 4346 6.284475 GCAATTTGAGTTTGTTGCATTACA 57.716 33.333 0.00 0.00 44.63 2.41
4108 4352 4.863152 ACTTGCAATTTGAGTTTGTTGC 57.137 36.364 0.00 2.25 45.27 4.17
4109 4353 5.809562 TGGTACTTGCAATTTGAGTTTGTTG 59.190 36.000 0.00 0.00 0.00 3.33
4110 4354 5.971763 TGGTACTTGCAATTTGAGTTTGTT 58.028 33.333 0.00 0.00 0.00 2.83
4111 4355 5.590530 TGGTACTTGCAATTTGAGTTTGT 57.409 34.783 0.00 0.00 0.00 2.83
4112 4356 5.984926 ACATGGTACTTGCAATTTGAGTTTG 59.015 36.000 0.00 0.00 0.00 2.93
4113 4357 6.160576 ACATGGTACTTGCAATTTGAGTTT 57.839 33.333 0.00 0.00 0.00 2.66
4114 4358 5.789643 ACATGGTACTTGCAATTTGAGTT 57.210 34.783 0.00 0.00 0.00 3.01
4115 4359 5.789643 AACATGGTACTTGCAATTTGAGT 57.210 34.783 0.00 0.00 0.00 3.41
4116 4360 6.700960 TCAAAACATGGTACTTGCAATTTGAG 59.299 34.615 12.59 0.00 32.39 3.02
4117 4361 6.577103 TCAAAACATGGTACTTGCAATTTGA 58.423 32.000 12.59 12.59 33.36 2.69
4118 4362 6.841443 TCAAAACATGGTACTTGCAATTTG 57.159 33.333 0.00 4.83 0.00 2.32
4119 4363 6.259829 GGTTCAAAACATGGTACTTGCAATTT 59.740 34.615 0.00 0.00 0.00 1.82
4120 4364 5.757808 GGTTCAAAACATGGTACTTGCAATT 59.242 36.000 0.00 0.00 0.00 2.32
4121 4365 5.070313 AGGTTCAAAACATGGTACTTGCAAT 59.930 36.000 0.00 0.00 0.00 3.56
4122 4366 4.404073 AGGTTCAAAACATGGTACTTGCAA 59.596 37.500 0.00 0.00 0.00 4.08
4123 4367 3.957497 AGGTTCAAAACATGGTACTTGCA 59.043 39.130 0.00 0.00 0.00 4.08
4124 4368 4.298332 CAGGTTCAAAACATGGTACTTGC 58.702 43.478 0.00 0.00 39.36 4.01
4132 4376 2.958355 ACTCACCCAGGTTCAAAACATG 59.042 45.455 0.00 0.00 42.44 3.21
4133 4377 2.958355 CACTCACCCAGGTTCAAAACAT 59.042 45.455 0.00 0.00 0.00 2.71
4134 4378 2.374184 CACTCACCCAGGTTCAAAACA 58.626 47.619 0.00 0.00 0.00 2.83
4135 4379 1.681264 CCACTCACCCAGGTTCAAAAC 59.319 52.381 0.00 0.00 0.00 2.43
4136 4380 1.410932 CCCACTCACCCAGGTTCAAAA 60.411 52.381 0.00 0.00 0.00 2.44
4137 4381 0.184933 CCCACTCACCCAGGTTCAAA 59.815 55.000 0.00 0.00 0.00 2.69
4138 4382 0.696143 TCCCACTCACCCAGGTTCAA 60.696 55.000 0.00 0.00 0.00 2.69
4139 4383 0.696143 TTCCCACTCACCCAGGTTCA 60.696 55.000 0.00 0.00 0.00 3.18
4140 4384 0.036875 CTTCCCACTCACCCAGGTTC 59.963 60.000 0.00 0.00 0.00 3.62
4141 4385 1.427072 CCTTCCCACTCACCCAGGTT 61.427 60.000 0.00 0.00 0.00 3.50
4142 4386 1.847968 CCTTCCCACTCACCCAGGT 60.848 63.158 0.00 0.00 0.00 4.00
4143 4387 3.081554 CCTTCCCACTCACCCAGG 58.918 66.667 0.00 0.00 0.00 4.45
4144 4388 1.856539 ATGCCTTCCCACTCACCCAG 61.857 60.000 0.00 0.00 0.00 4.45
4145 4389 1.852157 ATGCCTTCCCACTCACCCA 60.852 57.895 0.00 0.00 0.00 4.51
4146 4390 1.379044 CATGCCTTCCCACTCACCC 60.379 63.158 0.00 0.00 0.00 4.61
4147 4391 0.393537 CTCATGCCTTCCCACTCACC 60.394 60.000 0.00 0.00 0.00 4.02
4148 4392 1.028868 GCTCATGCCTTCCCACTCAC 61.029 60.000 0.00 0.00 0.00 3.51
4149 4393 1.300963 GCTCATGCCTTCCCACTCA 59.699 57.895 0.00 0.00 0.00 3.41
4150 4394 4.232310 GCTCATGCCTTCCCACTC 57.768 61.111 0.00 0.00 0.00 3.51
4160 4404 2.440980 GTGGGAAGGGGCTCATGC 60.441 66.667 0.00 0.00 38.76 4.06
4161 4405 2.276740 GGTGGGAAGGGGCTCATG 59.723 66.667 0.00 0.00 0.00 3.07
4162 4406 2.204291 TGGTGGGAAGGGGCTCAT 60.204 61.111 0.00 0.00 0.00 2.90
4163 4407 2.409984 TAGTGGTGGGAAGGGGCTCA 62.410 60.000 0.00 0.00 0.00 4.26
4164 4408 1.615424 TAGTGGTGGGAAGGGGCTC 60.615 63.158 0.00 0.00 0.00 4.70
4165 4409 1.616628 CTAGTGGTGGGAAGGGGCT 60.617 63.158 0.00 0.00 0.00 5.19
4166 4410 2.680370 CCTAGTGGTGGGAAGGGGC 61.680 68.421 0.00 0.00 0.00 5.80
4167 4411 2.680370 GCCTAGTGGTGGGAAGGGG 61.680 68.421 0.00 0.00 35.27 4.79
4168 4412 0.326238 TAGCCTAGTGGTGGGAAGGG 60.326 60.000 0.00 0.00 35.27 3.95
4169 4413 1.417890 CATAGCCTAGTGGTGGGAAGG 59.582 57.143 0.00 0.00 35.27 3.46
4170 4414 1.202698 GCATAGCCTAGTGGTGGGAAG 60.203 57.143 0.00 0.00 35.27 3.46
4171 4415 0.837272 GCATAGCCTAGTGGTGGGAA 59.163 55.000 0.00 0.00 35.27 3.97
4172 4416 1.054406 GGCATAGCCTAGTGGTGGGA 61.054 60.000 0.00 0.00 46.69 4.37
4173 4417 1.451936 GGCATAGCCTAGTGGTGGG 59.548 63.158 0.00 0.00 46.69 4.61
4184 4428 1.414181 TGGAGCAGACTAAGGCATAGC 59.586 52.381 0.00 0.00 34.78 2.97
4185 4429 3.827008 TTGGAGCAGACTAAGGCATAG 57.173 47.619 0.00 0.00 37.66 2.23
4186 4430 3.519510 AGTTTGGAGCAGACTAAGGCATA 59.480 43.478 0.00 0.00 26.81 3.14
4187 4431 2.307098 AGTTTGGAGCAGACTAAGGCAT 59.693 45.455 0.00 0.00 26.81 4.40
4188 4432 1.699634 AGTTTGGAGCAGACTAAGGCA 59.300 47.619 0.00 0.00 26.81 4.75
4189 4433 2.289694 TGAGTTTGGAGCAGACTAAGGC 60.290 50.000 0.00 0.00 28.84 4.35
4190 4434 3.685139 TGAGTTTGGAGCAGACTAAGG 57.315 47.619 0.00 0.00 28.84 2.69
4191 4435 6.376978 CAAATTGAGTTTGGAGCAGACTAAG 58.623 40.000 0.00 0.00 42.79 2.18
4192 4436 6.317789 CAAATTGAGTTTGGAGCAGACTAA 57.682 37.500 0.00 0.00 42.79 2.24
4193 4437 5.947228 CAAATTGAGTTTGGAGCAGACTA 57.053 39.130 0.00 0.00 42.79 2.59
4194 4438 4.843220 CAAATTGAGTTTGGAGCAGACT 57.157 40.909 0.00 0.00 42.79 3.24
4225 4469 9.046296 CAGAGAAACATATTGGACAGGTATTAC 57.954 37.037 0.00 0.00 0.00 1.89
4229 4473 6.351881 GGTCAGAGAAACATATTGGACAGGTA 60.352 42.308 0.00 0.00 0.00 3.08
4241 4485 3.446442 AATGCCTGGTCAGAGAAACAT 57.554 42.857 0.00 0.00 0.00 2.71
4647 4896 1.302949 CGGAACCCCACATCCACAT 59.697 57.895 0.00 0.00 35.34 3.21
4649 4898 2.045340 CCGGAACCCCACATCCAC 60.045 66.667 0.00 0.00 35.34 4.02
4714 4963 1.315690 CTAGGGCGTAGATCGGTGAA 58.684 55.000 8.51 0.00 40.26 3.18
4715 4964 1.170919 GCTAGGGCGTAGATCGGTGA 61.171 60.000 17.84 0.00 40.26 4.02
4776 5025 7.201530 GGACCAGTATAAATCTTGTGTCTTTCG 60.202 40.741 0.00 0.00 0.00 3.46
4884 5133 3.840124 AAACGAGGAGGTTGTTCTTCT 57.160 42.857 0.00 0.00 30.71 2.85
4903 5152 3.675775 GCCAAGCACAAGAACACTTCAAA 60.676 43.478 0.00 0.00 0.00 2.69
4908 5157 2.618709 GTTAGCCAAGCACAAGAACACT 59.381 45.455 0.00 0.00 0.00 3.55
4958 5207 3.849951 ACCGCAGTAGGGCATCGG 61.850 66.667 0.00 0.00 45.04 4.18
4972 5222 6.730175 CATATATAAGTAGAGCTAGCCACCG 58.270 44.000 12.13 0.00 0.00 4.94
4995 5245 4.741239 GGGGAGAGGACCAGGGCA 62.741 72.222 0.00 0.00 0.00 5.36
5030 5280 2.280524 CCCGTCGTTGTTGGCTCA 60.281 61.111 0.00 0.00 0.00 4.26
5103 5354 3.121030 CCACCAGAGCCTTTCGCG 61.121 66.667 0.00 0.00 44.76 5.87
5136 5387 0.395862 AGACGGAGGTCATCGTGGAT 60.396 55.000 0.00 0.00 45.92 3.41
5180 5431 3.988976 AGGCTATCATATCGGTGCAAT 57.011 42.857 0.00 0.00 0.00 3.56
5215 5466 1.304547 AGTGCAGGCGAGGAGTACT 60.305 57.895 0.00 0.00 0.00 2.73
5300 5551 2.178521 GCCGTGACGATCGACACT 59.821 61.111 35.17 11.94 38.32 3.55
5350 5601 2.243810 GAGGAGCGGAGATATCAAGGT 58.756 52.381 5.32 1.08 0.00 3.50
5513 5764 1.198759 GGTCCCCAGACTTGCCTACA 61.199 60.000 0.00 0.00 43.05 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.