Multiple sequence alignment - TraesCS5A01G376200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G376200 chr5A 100.000 6534 0 0 1 6534 573950441 573956974 0.000000e+00 12067.0
1 TraesCS5A01G376200 chr5D 91.779 2591 122 35 413 2933 455827330 455829899 0.000000e+00 3520.0
2 TraesCS5A01G376200 chr5D 93.574 2350 89 25 3670 5983 455830199 455832522 0.000000e+00 3446.0
3 TraesCS5A01G376200 chr5D 95.690 580 21 3 2935 3513 418285703 418285127 0.000000e+00 929.0
4 TraesCS5A01G376200 chr5D 89.202 426 34 5 6111 6533 456032245 456032661 7.510000e-144 521.0
5 TraesCS5A01G376200 chr5D 88.718 390 42 2 3800 4188 70388632 70388244 5.930000e-130 475.0
6 TraesCS5A01G376200 chr5D 88.415 164 8 4 5953 6115 456032151 456032304 3.110000e-43 187.0
7 TraesCS5A01G376200 chr5B 91.739 2530 127 25 413 2894 557902075 557904570 0.000000e+00 3439.0
8 TraesCS5A01G376200 chr5B 93.627 1224 39 10 4786 5990 557906132 557907335 0.000000e+00 1792.0
9 TraesCS5A01G376200 chr5B 88.941 1058 76 10 3670 4723 557904934 557905954 0.000000e+00 1267.0
10 TraesCS5A01G376200 chr5B 87.514 881 67 20 875 1735 346851355 346852212 0.000000e+00 977.0
11 TraesCS5A01G376200 chr5B 95.525 581 25 1 2933 3513 677787624 677788203 0.000000e+00 928.0
12 TraesCS5A01G376200 chr5B 91.468 586 35 7 5949 6531 557907789 557908362 0.000000e+00 791.0
13 TraesCS5A01G376200 chr5B 100.000 37 0 0 2895 2931 557904589 557904625 1.180000e-07 69.4
14 TraesCS5A01G376200 chr3A 88.195 881 70 19 875 1735 413471234 413472100 0.000000e+00 1020.0
15 TraesCS5A01G376200 chr3A 88.155 878 67 18 878 1734 176234189 176233328 0.000000e+00 1011.0
16 TraesCS5A01G376200 chr3A 89.362 47 4 1 2011 2057 712336514 712336559 2.540000e-04 58.4
17 TraesCS5A01G376200 chr7A 87.372 879 76 19 877 1734 92050127 92049263 0.000000e+00 976.0
18 TraesCS5A01G376200 chr7A 95.509 579 24 2 2936 3513 692300233 692300810 0.000000e+00 924.0
19 TraesCS5A01G376200 chr7A 82.391 460 50 15 3734 4183 27958166 27958604 8.000000e-99 372.0
20 TraesCS5A01G376200 chr7A 83.221 149 22 2 1868 2013 657525477 657525625 4.110000e-27 134.0
21 TraesCS5A01G376200 chr7A 87.671 73 7 1 1945 2015 159930819 159930747 4.200000e-12 84.2
22 TraesCS5A01G376200 chr7A 97.059 34 1 0 351 384 619243549 619243582 2.540000e-04 58.4
23 TraesCS5A01G376200 chr1A 87.159 880 77 17 875 1734 198058778 198059641 0.000000e+00 966.0
24 TraesCS5A01G376200 chr1A 86.947 881 79 17 875 1735 198036855 198037719 0.000000e+00 957.0
25 TraesCS5A01G376200 chr1A 82.129 526 71 17 3689 4203 576607296 576606783 4.680000e-116 429.0
26 TraesCS5A01G376200 chr1A 80.989 526 77 14 3673 4190 83830993 83830483 4.750000e-106 396.0
27 TraesCS5A01G376200 chr4B 95.719 584 22 3 2931 3513 610765073 610764492 0.000000e+00 937.0
28 TraesCS5A01G376200 chr4B 88.083 772 67 16 974 1735 585760359 585759603 0.000000e+00 893.0
29 TraesCS5A01G376200 chr4B 85.577 104 14 1 281 384 638366070 638365968 2.490000e-19 108.0
30 TraesCS5A01G376200 chr4B 95.745 47 2 0 2010 2056 582565300 582565346 7.030000e-10 76.8
31 TraesCS5A01G376200 chr4B 90.000 50 5 0 2008 2057 488263804 488263755 1.520000e-06 65.8
32 TraesCS5A01G376200 chr4B 89.130 46 5 0 2012 2057 517084620 517084665 2.540000e-04 58.4
33 TraesCS5A01G376200 chr7D 95.540 583 25 1 2931 3513 8075927 8076508 0.000000e+00 931.0
34 TraesCS5A01G376200 chr7D 95.238 357 17 0 26 382 627364204 627363848 3.420000e-157 566.0
35 TraesCS5A01G376200 chr3D 95.533 582 25 1 2932 3513 538196638 538197218 0.000000e+00 929.0
36 TraesCS5A01G376200 chr3D 93.750 48 3 0 2010 2057 384865657 384865610 9.090000e-09 73.1
37 TraesCS5A01G376200 chr6B 95.377 584 25 2 2932 3513 11016961 11016378 0.000000e+00 928.0
38 TraesCS5A01G376200 chr6B 78.866 194 23 9 1882 2057 49990105 49989912 1.490000e-21 115.0
39 TraesCS5A01G376200 chr1D 95.509 579 25 1 2935 3513 4577292 4576715 0.000000e+00 924.0
40 TraesCS5A01G376200 chr1D 95.205 584 26 2 2930 3513 468709914 468710495 0.000000e+00 922.0
41 TraesCS5A01G376200 chr2A 98.168 382 7 0 1 382 339564133 339563752 0.000000e+00 667.0
42 TraesCS5A01G376200 chr2A 81.921 531 83 12 3670 4191 642436155 642436681 2.800000e-118 436.0
43 TraesCS5A01G376200 chr2A 83.971 418 48 8 3786 4202 710764386 710763987 3.700000e-102 383.0
44 TraesCS5A01G376200 chr2A 81.818 154 24 3 1865 2015 119341790 119341942 6.880000e-25 126.0
45 TraesCS5A01G376200 chr2A 73.659 205 38 10 1868 2057 14415300 14415097 1.520000e-06 65.8
46 TraesCS5A01G376200 chr6A 87.986 283 33 1 3909 4190 393237083 393237365 3.780000e-87 333.0
47 TraesCS5A01G376200 chr2B 88.106 227 20 5 3976 4201 473308040 473307820 5.020000e-66 263.0
48 TraesCS5A01G376200 chr2B 79.757 247 40 9 3709 3947 768617282 768617038 3.130000e-38 171.0
49 TraesCS5A01G376200 chr2B 86.275 102 11 2 1917 2015 515262210 515262311 2.490000e-19 108.0
50 TraesCS5A01G376200 chr2B 90.909 55 4 1 3546 3600 800457748 800457695 9.090000e-09 73.1
51 TraesCS5A01G376200 chr4A 81.739 115 14 5 1945 2057 244231596 244231705 9.020000e-14 89.8
52 TraesCS5A01G376200 chr1B 87.671 73 7 1 1945 2015 276162397 276162325 4.200000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G376200 chr5A 573950441 573956974 6533 False 12067.00 12067 100.0000 1 6534 1 chr5A.!!$F1 6533
1 TraesCS5A01G376200 chr5D 455827330 455832522 5192 False 3483.00 3520 92.6765 413 5983 2 chr5D.!!$F1 5570
2 TraesCS5A01G376200 chr5D 418285127 418285703 576 True 929.00 929 95.6900 2935 3513 1 chr5D.!!$R2 578
3 TraesCS5A01G376200 chr5D 456032151 456032661 510 False 354.00 521 88.8085 5953 6533 2 chr5D.!!$F2 580
4 TraesCS5A01G376200 chr5B 557902075 557908362 6287 False 1471.68 3439 93.1550 413 6531 5 chr5B.!!$F3 6118
5 TraesCS5A01G376200 chr5B 346851355 346852212 857 False 977.00 977 87.5140 875 1735 1 chr5B.!!$F1 860
6 TraesCS5A01G376200 chr5B 677787624 677788203 579 False 928.00 928 95.5250 2933 3513 1 chr5B.!!$F2 580
7 TraesCS5A01G376200 chr3A 413471234 413472100 866 False 1020.00 1020 88.1950 875 1735 1 chr3A.!!$F1 860
8 TraesCS5A01G376200 chr3A 176233328 176234189 861 True 1011.00 1011 88.1550 878 1734 1 chr3A.!!$R1 856
9 TraesCS5A01G376200 chr7A 92049263 92050127 864 True 976.00 976 87.3720 877 1734 1 chr7A.!!$R1 857
10 TraesCS5A01G376200 chr7A 692300233 692300810 577 False 924.00 924 95.5090 2936 3513 1 chr7A.!!$F4 577
11 TraesCS5A01G376200 chr1A 198058778 198059641 863 False 966.00 966 87.1590 875 1734 1 chr1A.!!$F2 859
12 TraesCS5A01G376200 chr1A 198036855 198037719 864 False 957.00 957 86.9470 875 1735 1 chr1A.!!$F1 860
13 TraesCS5A01G376200 chr1A 576606783 576607296 513 True 429.00 429 82.1290 3689 4203 1 chr1A.!!$R2 514
14 TraesCS5A01G376200 chr1A 83830483 83830993 510 True 396.00 396 80.9890 3673 4190 1 chr1A.!!$R1 517
15 TraesCS5A01G376200 chr4B 610764492 610765073 581 True 937.00 937 95.7190 2931 3513 1 chr4B.!!$R3 582
16 TraesCS5A01G376200 chr4B 585759603 585760359 756 True 893.00 893 88.0830 974 1735 1 chr4B.!!$R2 761
17 TraesCS5A01G376200 chr7D 8075927 8076508 581 False 931.00 931 95.5400 2931 3513 1 chr7D.!!$F1 582
18 TraesCS5A01G376200 chr3D 538196638 538197218 580 False 929.00 929 95.5330 2932 3513 1 chr3D.!!$F1 581
19 TraesCS5A01G376200 chr6B 11016378 11016961 583 True 928.00 928 95.3770 2932 3513 1 chr6B.!!$R1 581
20 TraesCS5A01G376200 chr1D 4576715 4577292 577 True 924.00 924 95.5090 2935 3513 1 chr1D.!!$R1 578
21 TraesCS5A01G376200 chr1D 468709914 468710495 581 False 922.00 922 95.2050 2930 3513 1 chr1D.!!$F1 583
22 TraesCS5A01G376200 chr2A 642436155 642436681 526 False 436.00 436 81.9210 3670 4191 1 chr2A.!!$F2 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 367 0.313043 ATATTCCTGCAGCAATGCGC 59.687 50.0 13.33 13.40 42.91 6.09 F
438 439 0.450184 AATGCCACCGCGTGAATAAC 59.550 50.0 4.92 0.00 38.08 1.89 F
1352 1392 0.452122 GTGCCGACGTGCATGTTTAC 60.452 55.0 13.92 6.13 44.30 2.01 F
2679 2758 0.546122 ACAAGTGGCACAGACTTCCA 59.454 50.0 21.41 0.00 41.80 3.53 F
2803 2889 0.109132 GCTTTTCGCTTCCCACCATG 60.109 55.0 0.00 0.00 35.14 3.66 F
3571 3722 0.466189 CCGCACATGCCCTAAGGAAT 60.466 55.0 0.00 0.00 37.91 3.01 F
4776 4976 0.256752 ACAGCCTAGATTGCATGCCA 59.743 50.0 16.68 4.04 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2130 1.737793 GCGGTTTGACAGTTGGGATAG 59.262 52.381 0.00 0.0 0.00 2.08 R
2430 2489 2.102420 ACATCGAACTATGAATCCCGCA 59.898 45.455 0.00 0.0 0.00 5.69 R
2803 2889 0.394565 ATATGACGGGAGAGCAAGGC 59.605 55.000 0.00 0.0 0.00 4.35 R
3641 3792 0.107459 GAAGGGATCCTGTGCTGGAC 60.107 60.000 12.58 0.0 39.17 4.02 R
3976 4145 0.539051 AGACTTTGCCAGGAGATCGG 59.461 55.000 0.00 0.0 0.00 4.18 R
5256 5628 3.477210 ACTCTCCAGGAACAACTTGTC 57.523 47.619 0.00 0.0 0.00 3.18 R
6353 7236 1.074405 GGGGCAGATCAGGCAATATCA 59.926 52.381 13.70 0.0 35.46 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.589111 TTCAATTGGTTCATGTATGATGAATTG 57.411 29.630 5.42 17.30 39.80 2.32
27 28 8.968969 TCAATTGGTTCATGTATGATGAATTGA 58.031 29.630 19.55 19.55 39.89 2.57
28 29 9.758651 CAATTGGTTCATGTATGATGAATTGAT 57.241 29.630 17.89 0.00 39.80 2.57
29 30 9.758651 AATTGGTTCATGTATGATGAATTGATG 57.241 29.630 0.00 0.00 39.80 3.07
30 31 8.522542 TTGGTTCATGTATGATGAATTGATGA 57.477 30.769 0.00 0.00 39.80 2.92
31 32 7.933396 TGGTTCATGTATGATGAATTGATGAC 58.067 34.615 0.00 0.00 39.80 3.06
32 33 7.013559 TGGTTCATGTATGATGAATTGATGACC 59.986 37.037 0.00 0.00 39.80 4.02
33 34 7.013559 GGTTCATGTATGATGAATTGATGACCA 59.986 37.037 0.00 0.00 39.80 4.02
34 35 8.407832 GTTCATGTATGATGAATTGATGACCAA 58.592 33.333 0.00 0.00 39.80 3.67
35 36 7.933396 TCATGTATGATGAATTGATGACCAAC 58.067 34.615 0.00 0.00 37.63 3.77
36 37 7.556996 TCATGTATGATGAATTGATGACCAACA 59.443 33.333 0.00 0.00 37.63 3.33
37 38 7.885009 TGTATGATGAATTGATGACCAACAT 57.115 32.000 0.00 0.00 42.47 2.71
38 39 8.296211 TGTATGATGAATTGATGACCAACATT 57.704 30.769 0.00 0.00 39.56 2.71
39 40 8.751242 TGTATGATGAATTGATGACCAACATTT 58.249 29.630 0.00 0.00 39.56 2.32
40 41 9.590451 GTATGATGAATTGATGACCAACATTTT 57.410 29.630 0.00 0.00 39.56 1.82
42 43 8.312896 TGATGAATTGATGACCAACATTTTTG 57.687 30.769 0.00 0.00 39.56 2.44
43 44 7.932491 TGATGAATTGATGACCAACATTTTTGT 59.068 29.630 0.00 0.00 39.56 2.83
44 45 7.712264 TGAATTGATGACCAACATTTTTGTC 57.288 32.000 0.00 0.00 39.56 3.18
45 46 7.499292 TGAATTGATGACCAACATTTTTGTCT 58.501 30.769 0.00 0.00 39.56 3.41
46 47 7.986320 TGAATTGATGACCAACATTTTTGTCTT 59.014 29.630 0.00 0.00 39.56 3.01
47 48 7.718272 ATTGATGACCAACATTTTTGTCTTG 57.282 32.000 0.00 0.00 39.56 3.02
48 49 6.462552 TGATGACCAACATTTTTGTCTTGA 57.537 33.333 0.00 0.00 39.56 3.02
49 50 6.871844 TGATGACCAACATTTTTGTCTTGAA 58.128 32.000 0.00 0.00 39.56 2.69
50 51 7.326454 TGATGACCAACATTTTTGTCTTGAAA 58.674 30.769 0.00 0.00 39.56 2.69
51 52 7.492020 TGATGACCAACATTTTTGTCTTGAAAG 59.508 33.333 0.00 0.00 39.56 2.62
52 53 5.580297 TGACCAACATTTTTGTCTTGAAAGC 59.420 36.000 0.00 0.00 30.31 3.51
53 54 4.875536 ACCAACATTTTTGTCTTGAAAGCC 59.124 37.500 0.00 0.00 0.00 4.35
54 55 4.874966 CCAACATTTTTGTCTTGAAAGCCA 59.125 37.500 0.00 0.00 0.00 4.75
55 56 5.528320 CCAACATTTTTGTCTTGAAAGCCAT 59.472 36.000 0.00 0.00 0.00 4.40
56 57 6.038492 CCAACATTTTTGTCTTGAAAGCCATT 59.962 34.615 0.00 0.00 0.00 3.16
57 58 7.415429 CCAACATTTTTGTCTTGAAAGCCATTT 60.415 33.333 0.00 0.00 0.00 2.32
58 59 7.018635 ACATTTTTGTCTTGAAAGCCATTTG 57.981 32.000 0.00 0.00 0.00 2.32
59 60 6.598850 ACATTTTTGTCTTGAAAGCCATTTGT 59.401 30.769 0.00 0.00 0.00 2.83
60 61 7.768120 ACATTTTTGTCTTGAAAGCCATTTGTA 59.232 29.630 0.00 0.00 0.00 2.41
61 62 7.769272 TTTTTGTCTTGAAAGCCATTTGTAG 57.231 32.000 0.00 0.00 0.00 2.74
62 63 6.707440 TTTGTCTTGAAAGCCATTTGTAGA 57.293 33.333 0.00 0.00 0.00 2.59
63 64 6.899393 TTGTCTTGAAAGCCATTTGTAGAT 57.101 33.333 0.00 0.00 0.00 1.98
64 65 7.994425 TTGTCTTGAAAGCCATTTGTAGATA 57.006 32.000 0.00 0.00 0.00 1.98
65 66 7.377766 TGTCTTGAAAGCCATTTGTAGATAC 57.622 36.000 0.00 0.00 0.00 2.24
66 67 6.092122 TGTCTTGAAAGCCATTTGTAGATACG 59.908 38.462 0.00 0.00 0.00 3.06
67 68 6.092259 GTCTTGAAAGCCATTTGTAGATACGT 59.908 38.462 0.00 0.00 0.00 3.57
68 69 6.653320 TCTTGAAAGCCATTTGTAGATACGTT 59.347 34.615 0.00 0.00 0.00 3.99
69 70 7.820386 TCTTGAAAGCCATTTGTAGATACGTTA 59.180 33.333 0.00 0.00 0.00 3.18
70 71 7.908827 TGAAAGCCATTTGTAGATACGTTAA 57.091 32.000 0.00 0.00 0.00 2.01
71 72 8.500753 TGAAAGCCATTTGTAGATACGTTAAT 57.499 30.769 0.00 0.00 0.00 1.40
72 73 8.952278 TGAAAGCCATTTGTAGATACGTTAATT 58.048 29.630 0.00 0.00 0.00 1.40
73 74 9.783256 GAAAGCCATTTGTAGATACGTTAATTT 57.217 29.630 0.00 0.00 0.00 1.82
75 76 9.783256 AAGCCATTTGTAGATACGTTAATTTTC 57.217 29.630 0.00 0.00 0.00 2.29
76 77 8.403236 AGCCATTTGTAGATACGTTAATTTTCC 58.597 33.333 0.00 0.00 0.00 3.13
77 78 7.375017 GCCATTTGTAGATACGTTAATTTTCCG 59.625 37.037 0.00 0.00 0.00 4.30
78 79 8.392612 CCATTTGTAGATACGTTAATTTTCCGT 58.607 33.333 0.00 0.00 38.53 4.69
79 80 9.205916 CATTTGTAGATACGTTAATTTTCCGTG 57.794 33.333 0.00 0.00 36.12 4.94
80 81 6.335176 TGTAGATACGTTAATTTTCCGTGC 57.665 37.500 0.00 0.00 36.12 5.34
81 82 5.868258 TGTAGATACGTTAATTTTCCGTGCA 59.132 36.000 0.00 0.00 36.12 4.57
82 83 5.866335 AGATACGTTAATTTTCCGTGCAA 57.134 34.783 0.00 0.00 36.12 4.08
83 84 5.624292 AGATACGTTAATTTTCCGTGCAAC 58.376 37.500 0.00 0.00 36.12 4.17
84 85 3.694535 ACGTTAATTTTCCGTGCAACA 57.305 38.095 0.00 0.00 35.74 3.33
85 86 4.231718 ACGTTAATTTTCCGTGCAACAT 57.768 36.364 0.00 0.00 35.74 2.71
86 87 4.612943 ACGTTAATTTTCCGTGCAACATT 58.387 34.783 0.00 0.00 35.74 2.71
87 88 4.442733 ACGTTAATTTTCCGTGCAACATTG 59.557 37.500 0.00 0.00 35.74 2.82
105 106 8.524870 CAACATTGCAAACTAGCTTTTCTATT 57.475 30.769 1.71 0.00 34.99 1.73
106 107 8.981647 CAACATTGCAAACTAGCTTTTCTATTT 58.018 29.630 1.71 0.00 34.99 1.40
107 108 8.748380 ACATTGCAAACTAGCTTTTCTATTTC 57.252 30.769 1.71 0.00 34.99 2.17
108 109 8.579863 ACATTGCAAACTAGCTTTTCTATTTCT 58.420 29.630 1.71 0.00 34.99 2.52
141 142 7.956420 TTTGTAGGCCATTATATTACGACTG 57.044 36.000 5.01 0.00 0.00 3.51
142 143 6.904463 TGTAGGCCATTATATTACGACTGA 57.096 37.500 5.01 0.00 0.00 3.41
143 144 6.920817 TGTAGGCCATTATATTACGACTGAG 58.079 40.000 5.01 0.00 0.00 3.35
144 145 6.717997 TGTAGGCCATTATATTACGACTGAGA 59.282 38.462 5.01 0.00 0.00 3.27
145 146 6.665992 AGGCCATTATATTACGACTGAGAA 57.334 37.500 5.01 0.00 0.00 2.87
146 147 7.246171 AGGCCATTATATTACGACTGAGAAT 57.754 36.000 5.01 0.00 0.00 2.40
147 148 7.099764 AGGCCATTATATTACGACTGAGAATG 58.900 38.462 5.01 0.00 0.00 2.67
148 149 6.183360 GGCCATTATATTACGACTGAGAATGC 60.183 42.308 0.00 0.00 0.00 3.56
149 150 6.368791 GCCATTATATTACGACTGAGAATGCA 59.631 38.462 0.00 0.00 0.00 3.96
150 151 7.095229 GCCATTATATTACGACTGAGAATGCAA 60.095 37.037 0.00 0.00 0.00 4.08
151 152 8.773645 CCATTATATTACGACTGAGAATGCAAA 58.226 33.333 0.00 0.00 0.00 3.68
152 153 9.803130 CATTATATTACGACTGAGAATGCAAAG 57.197 33.333 0.00 0.00 0.00 2.77
153 154 9.764363 ATTATATTACGACTGAGAATGCAAAGA 57.236 29.630 0.00 0.00 0.00 2.52
154 155 9.594478 TTATATTACGACTGAGAATGCAAAGAA 57.406 29.630 0.00 0.00 0.00 2.52
155 156 5.591643 TTACGACTGAGAATGCAAAGAAC 57.408 39.130 0.00 0.00 0.00 3.01
156 157 2.808543 ACGACTGAGAATGCAAAGAACC 59.191 45.455 0.00 0.00 0.00 3.62
157 158 3.070018 CGACTGAGAATGCAAAGAACCT 58.930 45.455 0.00 0.00 0.00 3.50
158 159 3.120408 CGACTGAGAATGCAAAGAACCTG 60.120 47.826 0.00 0.00 0.00 4.00
159 160 4.067896 GACTGAGAATGCAAAGAACCTGA 58.932 43.478 0.00 0.00 0.00 3.86
160 161 4.464008 ACTGAGAATGCAAAGAACCTGAA 58.536 39.130 0.00 0.00 0.00 3.02
161 162 5.075493 ACTGAGAATGCAAAGAACCTGAAT 58.925 37.500 0.00 0.00 0.00 2.57
162 163 5.048224 ACTGAGAATGCAAAGAACCTGAATG 60.048 40.000 0.00 0.00 0.00 2.67
163 164 4.219070 TGAGAATGCAAAGAACCTGAATGG 59.781 41.667 0.00 0.00 42.93 3.16
183 184 9.920946 TGAATGGTAAAGATTTAAGCTTATCCT 57.079 29.630 7.08 2.23 0.00 3.24
185 186 9.920946 AATGGTAAAGATTTAAGCTTATCCTCA 57.079 29.630 7.08 0.65 0.00 3.86
187 188 9.920946 TGGTAAAGATTTAAGCTTATCCTCATT 57.079 29.630 7.08 6.59 0.00 2.57
193 194 9.479549 AGATTTAAGCTTATCCTCATTTTTCCA 57.520 29.630 7.08 0.00 0.00 3.53
194 195 9.741647 GATTTAAGCTTATCCTCATTTTTCCAG 57.258 33.333 7.08 0.00 0.00 3.86
195 196 5.588958 AAGCTTATCCTCATTTTTCCAGC 57.411 39.130 0.00 0.00 0.00 4.85
196 197 4.864726 AGCTTATCCTCATTTTTCCAGCT 58.135 39.130 0.00 0.00 0.00 4.24
197 198 6.006275 AGCTTATCCTCATTTTTCCAGCTA 57.994 37.500 0.00 0.00 33.33 3.32
198 199 5.825151 AGCTTATCCTCATTTTTCCAGCTAC 59.175 40.000 0.00 0.00 33.33 3.58
199 200 5.009110 GCTTATCCTCATTTTTCCAGCTACC 59.991 44.000 0.00 0.00 0.00 3.18
200 201 3.366052 TCCTCATTTTTCCAGCTACCC 57.634 47.619 0.00 0.00 0.00 3.69
201 202 2.647299 TCCTCATTTTTCCAGCTACCCA 59.353 45.455 0.00 0.00 0.00 4.51
202 203 3.019564 CCTCATTTTTCCAGCTACCCAG 58.980 50.000 0.00 0.00 0.00 4.45
203 204 3.019564 CTCATTTTTCCAGCTACCCAGG 58.980 50.000 0.00 0.00 0.00 4.45
204 205 2.378547 TCATTTTTCCAGCTACCCAGGT 59.621 45.455 0.00 0.00 0.00 4.00
205 206 2.579410 TTTTTCCAGCTACCCAGGTC 57.421 50.000 0.00 0.00 0.00 3.85
206 207 1.742308 TTTTCCAGCTACCCAGGTCT 58.258 50.000 0.00 0.00 0.00 3.85
207 208 1.742308 TTTCCAGCTACCCAGGTCTT 58.258 50.000 0.00 0.00 0.00 3.01
208 209 1.276622 TTCCAGCTACCCAGGTCTTC 58.723 55.000 0.00 0.00 0.00 2.87
209 210 0.413832 TCCAGCTACCCAGGTCTTCT 59.586 55.000 0.00 0.00 0.00 2.85
210 211 1.203313 TCCAGCTACCCAGGTCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
211 212 2.043939 TCCAGCTACCCAGGTCTTCTTA 59.956 50.000 0.00 0.00 0.00 2.10
212 213 2.838202 CCAGCTACCCAGGTCTTCTTAA 59.162 50.000 0.00 0.00 0.00 1.85
213 214 3.456277 CCAGCTACCCAGGTCTTCTTAAT 59.544 47.826 0.00 0.00 0.00 1.40
214 215 4.446371 CAGCTACCCAGGTCTTCTTAATG 58.554 47.826 0.00 0.00 0.00 1.90
215 216 4.080863 CAGCTACCCAGGTCTTCTTAATGT 60.081 45.833 0.00 0.00 0.00 2.71
216 217 4.536489 AGCTACCCAGGTCTTCTTAATGTT 59.464 41.667 0.00 0.00 0.00 2.71
217 218 4.636206 GCTACCCAGGTCTTCTTAATGTTG 59.364 45.833 0.00 0.00 0.00 3.33
218 219 3.421844 ACCCAGGTCTTCTTAATGTTGC 58.578 45.455 0.00 0.00 0.00 4.17
219 220 2.755103 CCCAGGTCTTCTTAATGTTGCC 59.245 50.000 0.00 0.00 0.00 4.52
220 221 2.420022 CCAGGTCTTCTTAATGTTGCCG 59.580 50.000 0.00 0.00 0.00 5.69
221 222 3.334691 CAGGTCTTCTTAATGTTGCCGA 58.665 45.455 0.00 0.00 0.00 5.54
222 223 3.941483 CAGGTCTTCTTAATGTTGCCGAT 59.059 43.478 0.00 0.00 0.00 4.18
223 224 4.396166 CAGGTCTTCTTAATGTTGCCGATT 59.604 41.667 0.00 0.00 0.00 3.34
224 225 5.584649 CAGGTCTTCTTAATGTTGCCGATTA 59.415 40.000 0.00 0.00 0.00 1.75
225 226 6.260936 CAGGTCTTCTTAATGTTGCCGATTAT 59.739 38.462 0.00 0.00 0.00 1.28
226 227 6.828785 AGGTCTTCTTAATGTTGCCGATTATT 59.171 34.615 0.00 0.00 0.00 1.40
227 228 6.912591 GGTCTTCTTAATGTTGCCGATTATTG 59.087 38.462 0.00 0.00 0.00 1.90
228 229 7.415206 GGTCTTCTTAATGTTGCCGATTATTGT 60.415 37.037 0.00 0.00 0.00 2.71
229 230 7.640240 GTCTTCTTAATGTTGCCGATTATTGTC 59.360 37.037 0.00 0.00 0.00 3.18
230 231 6.043327 TCTTAATGTTGCCGATTATTGTCG 57.957 37.500 0.00 0.00 41.13 4.35
231 232 5.583061 TCTTAATGTTGCCGATTATTGTCGT 59.417 36.000 0.00 0.00 39.89 4.34
232 233 3.944422 ATGTTGCCGATTATTGTCGTC 57.056 42.857 0.00 0.00 39.89 4.20
233 234 2.967362 TGTTGCCGATTATTGTCGTCT 58.033 42.857 0.00 0.00 39.89 4.18
234 235 3.331150 TGTTGCCGATTATTGTCGTCTT 58.669 40.909 0.00 0.00 39.89 3.01
235 236 4.496360 TGTTGCCGATTATTGTCGTCTTA 58.504 39.130 0.00 0.00 39.89 2.10
236 237 4.565166 TGTTGCCGATTATTGTCGTCTTAG 59.435 41.667 0.00 0.00 39.89 2.18
237 238 4.642445 TGCCGATTATTGTCGTCTTAGA 57.358 40.909 0.00 0.00 39.89 2.10
238 239 4.357142 TGCCGATTATTGTCGTCTTAGAC 58.643 43.478 1.64 1.64 39.89 2.59
239 240 4.097437 TGCCGATTATTGTCGTCTTAGACT 59.903 41.667 10.83 0.00 41.47 3.24
240 241 4.676018 GCCGATTATTGTCGTCTTAGACTC 59.324 45.833 10.83 4.41 41.47 3.36
241 242 5.505985 GCCGATTATTGTCGTCTTAGACTCT 60.506 44.000 10.83 0.00 41.47 3.24
242 243 5.910166 CCGATTATTGTCGTCTTAGACTCTG 59.090 44.000 10.83 0.00 41.47 3.35
243 244 6.238402 CCGATTATTGTCGTCTTAGACTCTGA 60.238 42.308 10.83 0.00 41.47 3.27
244 245 6.848800 CGATTATTGTCGTCTTAGACTCTGAG 59.151 42.308 10.83 2.45 41.47 3.35
245 246 7.466185 CGATTATTGTCGTCTTAGACTCTGAGT 60.466 40.741 10.66 10.66 41.47 3.41
246 247 5.968528 ATTGTCGTCTTAGACTCTGAGTT 57.031 39.130 12.27 4.93 41.47 3.01
247 248 4.750952 TGTCGTCTTAGACTCTGAGTTG 57.249 45.455 12.27 3.63 41.47 3.16
248 249 4.386711 TGTCGTCTTAGACTCTGAGTTGA 58.613 43.478 12.27 5.83 41.47 3.18
249 250 4.213694 TGTCGTCTTAGACTCTGAGTTGAC 59.786 45.833 12.27 15.15 41.47 3.18
250 251 4.453136 GTCGTCTTAGACTCTGAGTTGACT 59.547 45.833 12.27 7.22 38.09 3.41
251 252 5.049267 GTCGTCTTAGACTCTGAGTTGACTT 60.049 44.000 12.27 0.00 38.09 3.01
252 253 5.179742 TCGTCTTAGACTCTGAGTTGACTTC 59.820 44.000 12.27 0.00 0.00 3.01
253 254 5.180492 CGTCTTAGACTCTGAGTTGACTTCT 59.820 44.000 12.27 5.78 0.00 2.85
254 255 6.293735 CGTCTTAGACTCTGAGTTGACTTCTT 60.294 42.308 12.27 0.00 0.00 2.52
255 256 7.095144 CGTCTTAGACTCTGAGTTGACTTCTTA 60.095 40.741 12.27 0.00 0.00 2.10
256 257 8.569641 GTCTTAGACTCTGAGTTGACTTCTTAA 58.430 37.037 12.27 0.00 0.00 1.85
257 258 8.569641 TCTTAGACTCTGAGTTGACTTCTTAAC 58.430 37.037 12.27 0.00 0.00 2.01
258 259 6.716934 AGACTCTGAGTTGACTTCTTAACA 57.283 37.500 12.27 0.00 0.00 2.41
259 260 7.113658 AGACTCTGAGTTGACTTCTTAACAA 57.886 36.000 12.27 0.00 0.00 2.83
260 261 6.981559 AGACTCTGAGTTGACTTCTTAACAAC 59.018 38.462 12.27 0.00 42.51 3.32
261 262 5.749109 ACTCTGAGTTGACTTCTTAACAACG 59.251 40.000 4.06 0.00 45.41 4.10
262 263 5.898174 TCTGAGTTGACTTCTTAACAACGA 58.102 37.500 0.00 0.00 45.41 3.85
263 264 6.513180 TCTGAGTTGACTTCTTAACAACGAT 58.487 36.000 0.00 0.00 45.41 3.73
264 265 6.984474 TCTGAGTTGACTTCTTAACAACGATT 59.016 34.615 0.00 0.00 45.41 3.34
265 266 8.139350 TCTGAGTTGACTTCTTAACAACGATTA 58.861 33.333 0.00 0.00 45.41 1.75
266 267 8.827177 TGAGTTGACTTCTTAACAACGATTAT 57.173 30.769 0.00 0.00 45.41 1.28
267 268 9.917129 TGAGTTGACTTCTTAACAACGATTATA 57.083 29.630 0.00 0.00 45.41 0.98
269 270 9.148104 AGTTGACTTCTTAACAACGATTATACC 57.852 33.333 0.00 0.00 45.41 2.73
270 271 8.928733 GTTGACTTCTTAACAACGATTATACCA 58.071 33.333 0.00 0.00 35.42 3.25
271 272 8.470040 TGACTTCTTAACAACGATTATACCAC 57.530 34.615 0.00 0.00 0.00 4.16
272 273 8.089597 TGACTTCTTAACAACGATTATACCACA 58.910 33.333 0.00 0.00 0.00 4.17
273 274 9.095065 GACTTCTTAACAACGATTATACCACAT 57.905 33.333 0.00 0.00 0.00 3.21
323 324 9.878599 AAATTAGTTGTCTTCTTTTGTATGTCG 57.121 29.630 0.00 0.00 0.00 4.35
324 325 8.827177 ATTAGTTGTCTTCTTTTGTATGTCGA 57.173 30.769 0.00 0.00 0.00 4.20
325 326 8.827177 TTAGTTGTCTTCTTTTGTATGTCGAT 57.173 30.769 0.00 0.00 0.00 3.59
326 327 7.121974 AGTTGTCTTCTTTTGTATGTCGATG 57.878 36.000 0.00 0.00 0.00 3.84
327 328 6.706270 AGTTGTCTTCTTTTGTATGTCGATGT 59.294 34.615 0.00 0.00 0.00 3.06
328 329 7.226720 AGTTGTCTTCTTTTGTATGTCGATGTT 59.773 33.333 0.00 0.00 0.00 2.71
329 330 8.492748 GTTGTCTTCTTTTGTATGTCGATGTTA 58.507 33.333 0.00 0.00 0.00 2.41
330 331 8.014322 TGTCTTCTTTTGTATGTCGATGTTAC 57.986 34.615 0.00 0.00 0.00 2.50
331 332 7.870954 TGTCTTCTTTTGTATGTCGATGTTACT 59.129 33.333 0.00 0.00 0.00 2.24
332 333 8.373992 GTCTTCTTTTGTATGTCGATGTTACTC 58.626 37.037 0.00 0.00 0.00 2.59
333 334 8.304596 TCTTCTTTTGTATGTCGATGTTACTCT 58.695 33.333 0.00 0.00 0.00 3.24
334 335 9.569167 CTTCTTTTGTATGTCGATGTTACTCTA 57.431 33.333 0.00 0.00 0.00 2.43
335 336 9.917129 TTCTTTTGTATGTCGATGTTACTCTAA 57.083 29.630 0.00 0.00 0.00 2.10
336 337 9.917129 TCTTTTGTATGTCGATGTTACTCTAAA 57.083 29.630 0.00 0.00 0.00 1.85
341 342 9.309516 TGTATGTCGATGTTACTCTAAAAATCC 57.690 33.333 0.00 0.00 0.00 3.01
342 343 6.880822 TGTCGATGTTACTCTAAAAATCCG 57.119 37.500 0.00 0.00 0.00 4.18
343 344 6.392354 TGTCGATGTTACTCTAAAAATCCGT 58.608 36.000 0.00 0.00 0.00 4.69
344 345 6.309494 TGTCGATGTTACTCTAAAAATCCGTG 59.691 38.462 0.00 0.00 0.00 4.94
345 346 6.529125 GTCGATGTTACTCTAAAAATCCGTGA 59.471 38.462 0.00 0.00 0.00 4.35
346 347 6.529125 TCGATGTTACTCTAAAAATCCGTGAC 59.471 38.462 0.00 0.00 0.00 3.67
347 348 6.309494 CGATGTTACTCTAAAAATCCGTGACA 59.691 38.462 0.00 0.00 0.00 3.58
348 349 7.010183 CGATGTTACTCTAAAAATCCGTGACAT 59.990 37.037 0.00 0.00 37.47 3.06
349 350 9.309516 GATGTTACTCTAAAAATCCGTGACATA 57.690 33.333 0.00 0.00 35.73 2.29
350 351 9.832445 ATGTTACTCTAAAAATCCGTGACATAT 57.168 29.630 0.00 0.00 34.43 1.78
351 352 9.661563 TGTTACTCTAAAAATCCGTGACATATT 57.338 29.630 0.00 0.00 0.00 1.28
353 354 7.787725 ACTCTAAAAATCCGTGACATATTCC 57.212 36.000 0.00 0.00 0.00 3.01
354 355 7.565680 ACTCTAAAAATCCGTGACATATTCCT 58.434 34.615 0.00 0.00 0.00 3.36
355 356 7.495934 ACTCTAAAAATCCGTGACATATTCCTG 59.504 37.037 0.00 0.00 0.00 3.86
356 357 4.900635 AAAATCCGTGACATATTCCTGC 57.099 40.909 0.00 0.00 0.00 4.85
357 358 3.558931 AATCCGTGACATATTCCTGCA 57.441 42.857 0.00 0.00 0.00 4.41
358 359 2.602257 TCCGTGACATATTCCTGCAG 57.398 50.000 6.78 6.78 0.00 4.41
359 360 0.940126 CCGTGACATATTCCTGCAGC 59.060 55.000 8.66 0.00 0.00 5.25
360 361 1.655484 CGTGACATATTCCTGCAGCA 58.345 50.000 8.66 0.00 0.00 4.41
361 362 2.009051 CGTGACATATTCCTGCAGCAA 58.991 47.619 8.66 0.00 0.00 3.91
362 363 2.615447 CGTGACATATTCCTGCAGCAAT 59.385 45.455 8.20 8.20 0.00 3.56
363 364 3.547413 CGTGACATATTCCTGCAGCAATG 60.547 47.826 13.33 12.42 0.00 2.82
364 365 2.359848 TGACATATTCCTGCAGCAATGC 59.640 45.455 13.33 0.00 0.00 3.56
365 366 1.335810 ACATATTCCTGCAGCAATGCG 59.664 47.619 13.33 6.25 37.69 4.73
366 367 0.313043 ATATTCCTGCAGCAATGCGC 59.687 50.000 13.33 13.40 42.91 6.09
380 381 2.740055 GCGCGGGGCATCATCTAG 60.740 66.667 8.83 0.00 42.87 2.43
381 382 2.737180 CGCGGGGCATCATCTAGT 59.263 61.111 0.00 0.00 0.00 2.57
382 383 1.964448 CGCGGGGCATCATCTAGTA 59.036 57.895 0.00 0.00 0.00 1.82
383 384 0.532573 CGCGGGGCATCATCTAGTAT 59.467 55.000 0.00 0.00 0.00 2.12
384 385 1.737029 CGCGGGGCATCATCTAGTATG 60.737 57.143 0.00 0.00 0.00 2.39
385 386 1.550524 GCGGGGCATCATCTAGTATGA 59.449 52.381 7.15 7.15 0.00 2.15
386 387 2.169352 GCGGGGCATCATCTAGTATGAT 59.831 50.000 10.23 10.23 39.16 2.45
397 398 6.846350 TCATCTAGTATGATGAGTGCGTATG 58.154 40.000 3.42 0.00 45.29 2.39
398 399 6.431234 TCATCTAGTATGATGAGTGCGTATGT 59.569 38.462 3.42 0.00 45.29 2.29
399 400 6.242508 TCTAGTATGATGAGTGCGTATGTC 57.757 41.667 0.00 0.00 0.00 3.06
400 401 5.998363 TCTAGTATGATGAGTGCGTATGTCT 59.002 40.000 0.00 0.00 0.00 3.41
401 402 4.864633 AGTATGATGAGTGCGTATGTCTG 58.135 43.478 0.00 0.00 0.00 3.51
402 403 3.808466 ATGATGAGTGCGTATGTCTGT 57.192 42.857 0.00 0.00 0.00 3.41
403 404 2.879826 TGATGAGTGCGTATGTCTGTG 58.120 47.619 0.00 0.00 0.00 3.66
404 405 2.231235 TGATGAGTGCGTATGTCTGTGT 59.769 45.455 0.00 0.00 0.00 3.72
405 406 2.812358 TGAGTGCGTATGTCTGTGTT 57.188 45.000 0.00 0.00 0.00 3.32
406 407 3.926821 TGAGTGCGTATGTCTGTGTTA 57.073 42.857 0.00 0.00 0.00 2.41
407 408 4.245845 TGAGTGCGTATGTCTGTGTTAA 57.754 40.909 0.00 0.00 0.00 2.01
408 409 4.623002 TGAGTGCGTATGTCTGTGTTAAA 58.377 39.130 0.00 0.00 0.00 1.52
409 410 5.051153 TGAGTGCGTATGTCTGTGTTAAAA 58.949 37.500 0.00 0.00 0.00 1.52
410 411 5.524281 TGAGTGCGTATGTCTGTGTTAAAAA 59.476 36.000 0.00 0.00 0.00 1.94
438 439 0.450184 AATGCCACCGCGTGAATAAC 59.550 50.000 4.92 0.00 38.08 1.89
515 516 1.187087 CGCTACCACTCTCCTTCCTT 58.813 55.000 0.00 0.00 0.00 3.36
518 519 2.890602 GCTACCACTCTCCTTCCTTCCT 60.891 54.545 0.00 0.00 0.00 3.36
600 601 1.694525 CTCTTCCTCCCCCTTCCCC 60.695 68.421 0.00 0.00 0.00 4.81
858 868 2.437716 TCGCGCTTTCCCCAATCC 60.438 61.111 5.56 0.00 0.00 3.01
865 875 1.760192 CTTTCCCCAATCCTGCTCTG 58.240 55.000 0.00 0.00 0.00 3.35
991 1015 4.679372 GCTCCTCTTTCTTATCTGCTTCGT 60.679 45.833 0.00 0.00 0.00 3.85
1026 1050 3.490759 CAGATCGTGTGCCACCGC 61.491 66.667 0.00 0.00 0.00 5.68
1136 1162 1.369091 GGTACTGGATTGCAGCGTGG 61.369 60.000 4.94 0.00 0.00 4.94
1352 1392 0.452122 GTGCCGACGTGCATGTTTAC 60.452 55.000 13.92 6.13 44.30 2.01
1423 1464 4.808364 CCTAGTTTCACTATCTGCTGCTTC 59.192 45.833 0.00 0.00 29.08 3.86
1426 1467 6.232581 AGTTTCACTATCTGCTGCTTCTAT 57.767 37.500 0.00 0.00 0.00 1.98
1427 1468 6.047870 AGTTTCACTATCTGCTGCTTCTATG 58.952 40.000 0.00 0.00 0.00 2.23
1428 1469 5.859205 TTCACTATCTGCTGCTTCTATGA 57.141 39.130 0.00 0.00 0.00 2.15
1429 1470 6.416631 TTCACTATCTGCTGCTTCTATGAT 57.583 37.500 0.00 0.00 0.00 2.45
1430 1471 7.530426 TTCACTATCTGCTGCTTCTATGATA 57.470 36.000 0.00 0.00 0.00 2.15
1431 1472 7.715266 TCACTATCTGCTGCTTCTATGATAT 57.285 36.000 0.00 0.00 0.00 1.63
1493 1534 6.770785 GGATAAATCTTATGTTGCACCCTGTA 59.229 38.462 0.00 0.00 0.00 2.74
1573 1614 8.846943 AAATTCACAGGAAATAACAAAATCCC 57.153 30.769 0.00 0.00 36.43 3.85
1650 1691 6.286240 TCTGTACATTCACAGCTGAATAGT 57.714 37.500 23.35 13.88 44.04 2.12
1651 1692 6.101997 TCTGTACATTCACAGCTGAATAGTG 58.898 40.000 23.35 13.68 44.04 2.74
1692 1734 7.643569 TGGATCTGTACATGCAATTATTTGT 57.356 32.000 0.00 0.00 35.17 2.83
1721 1763 7.167535 GGGTTAGTGGTTAGTTTTATGTACCA 58.832 38.462 0.00 0.00 36.58 3.25
1889 1933 4.640647 GCTCCCTCCGATTCAATTTACTTT 59.359 41.667 0.00 0.00 0.00 2.66
1943 1987 9.762381 ATTATAAGTTTGACCAAGTTTATGGGA 57.238 29.630 0.00 0.00 45.18 4.37
1945 1989 6.405278 AAGTTTGACCAAGTTTATGGGAAG 57.595 37.500 0.00 0.00 45.18 3.46
2028 2072 9.764363 TCTGATGGTATTGTAGATGTTGATAAC 57.236 33.333 0.00 0.00 0.00 1.89
2086 2130 3.425758 CGAAGTAAATTGAAACGGAGGGC 60.426 47.826 0.00 0.00 0.00 5.19
2105 2150 1.737793 GCTATCCCAACTGTCAAACCG 59.262 52.381 0.00 0.00 0.00 4.44
2108 2153 0.759959 TCCCAACTGTCAAACCGCTA 59.240 50.000 0.00 0.00 0.00 4.26
2154 2199 4.024048 CCAAAGTGCTGTTTAGATTGTCGT 60.024 41.667 0.00 0.00 0.00 4.34
2241 2287 4.768968 AGGATTGGAGTTGTTGAATTCCTG 59.231 41.667 2.27 0.00 38.51 3.86
2288 2344 9.448438 CTTACGGAAATCAATATGGGATATGAA 57.552 33.333 0.00 0.00 0.00 2.57
2405 2464 2.815503 TCATCCAAATGCGCCATCTATG 59.184 45.455 4.18 2.02 32.58 2.23
2412 2471 5.260900 CAAATGCGCCATCTATGATATTCG 58.739 41.667 4.18 0.00 0.00 3.34
2451 2510 2.102420 TGCGGGATTCATAGTTCGATGT 59.898 45.455 0.00 0.00 0.00 3.06
2542 2601 3.276857 TGCTACGTTTTACACCAACCAA 58.723 40.909 0.00 0.00 0.00 3.67
2556 2615 2.489329 CCAACCAAGCAACCATACTCAG 59.511 50.000 0.00 0.00 0.00 3.35
2588 2647 4.142816 CGTTGGCTATCTTCCTTTTCTGTG 60.143 45.833 0.00 0.00 0.00 3.66
2679 2758 0.546122 ACAAGTGGCACAGACTTCCA 59.454 50.000 21.41 0.00 41.80 3.53
2718 2797 4.019792 TGCATCAGTAAAAGCTTCAGGA 57.980 40.909 0.00 0.00 0.00 3.86
2727 2806 6.486993 CAGTAAAAGCTTCAGGAAAGTAGGTT 59.513 38.462 0.00 0.00 37.31 3.50
2803 2889 0.109132 GCTTTTCGCTTCCCACCATG 60.109 55.000 0.00 0.00 35.14 3.66
2865 2951 5.574055 CGTGCAGTGCTGATTTTATTGATTT 59.426 36.000 17.60 0.00 0.00 2.17
3143 3249 3.036429 GCCCACCAAGCTCCGAGAT 62.036 63.158 0.00 0.00 0.00 2.75
3467 3573 1.412710 TGCACAACGAAGAAGAGGAGT 59.587 47.619 0.00 0.00 0.00 3.85
3533 3684 1.070175 CGAAATCAAACCAGCGTCGTT 60.070 47.619 0.00 0.00 0.00 3.85
3544 3695 2.722201 GCGTCGTTCCTCCCATCCT 61.722 63.158 0.00 0.00 0.00 3.24
3556 3707 4.147449 CATCCTGTCTCGCCCGCA 62.147 66.667 0.00 0.00 0.00 5.69
3571 3722 0.466189 CCGCACATGCCCTAAGGAAT 60.466 55.000 0.00 0.00 37.91 3.01
3641 3792 4.838152 CCGATGTGCCTCCACCCG 62.838 72.222 0.00 0.00 41.35 5.28
3642 3793 4.082523 CGATGTGCCTCCACCCGT 62.083 66.667 0.00 0.00 41.35 5.28
3643 3794 2.125106 GATGTGCCTCCACCCGTC 60.125 66.667 0.00 0.00 41.35 4.79
3644 3795 3.682292 GATGTGCCTCCACCCGTCC 62.682 68.421 0.00 0.00 41.35 4.79
3646 3797 4.394712 GTGCCTCCACCCGTCCAG 62.395 72.222 0.00 0.00 35.92 3.86
3649 3800 4.394712 CCTCCACCCGTCCAGCAC 62.395 72.222 0.00 0.00 0.00 4.40
3650 3801 3.625897 CTCCACCCGTCCAGCACA 61.626 66.667 0.00 0.00 0.00 4.57
3651 3802 3.596066 CTCCACCCGTCCAGCACAG 62.596 68.421 0.00 0.00 0.00 3.66
3653 3804 3.625897 CACCCGTCCAGCACAGGA 61.626 66.667 0.00 0.00 34.64 3.86
3654 3805 2.607750 ACCCGTCCAGCACAGGAT 60.608 61.111 0.00 0.00 40.42 3.24
3721 3880 1.751143 TTCCTCCCTGTCTCCACCCT 61.751 60.000 0.00 0.00 0.00 4.34
3732 3891 3.324930 CCACCCTGAGCTCCAGCA 61.325 66.667 12.15 0.00 45.16 4.41
3774 3933 4.154347 CTCCACCCTGAGCTCCGC 62.154 72.222 12.15 0.00 0.00 5.54
3957 4126 0.787084 TCTCCTCTCCCCTGTCAAGT 59.213 55.000 0.00 0.00 0.00 3.16
3971 4140 2.203788 AAGTGTCCGGCCTCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
3976 4145 3.797353 TCCGGCCTCCTCATTGCC 61.797 66.667 0.00 0.00 41.85 4.52
4007 4176 4.318332 TGGCAAAGTCTCATACAACTCAG 58.682 43.478 0.00 0.00 0.00 3.35
4039 4208 5.355596 GTTGACCATCCAAACAACATTTGA 58.644 37.500 0.00 0.00 41.16 2.69
4047 4216 7.173562 CCATCCAAACAACATTTGACATTCAAT 59.826 33.333 0.98 0.00 36.11 2.57
4094 4263 7.962918 CCGAATACTTAAACATCCAAACAGAAG 59.037 37.037 0.00 0.00 0.00 2.85
4115 4284 7.648112 CAGAAGTATTGGCATTCAATCTCAATG 59.352 37.037 1.81 0.00 44.32 2.82
4245 4415 4.043561 TCCAAAGGGCTACTGTTTTATGGA 59.956 41.667 0.00 0.00 0.00 3.41
4246 4416 4.157840 CCAAAGGGCTACTGTTTTATGGAC 59.842 45.833 0.00 0.00 0.00 4.02
4550 4720 6.206634 TGTTAATTTGTCAGAGGAATGTGGAC 59.793 38.462 0.00 0.00 0.00 4.02
4551 4721 4.647564 ATTTGTCAGAGGAATGTGGACT 57.352 40.909 0.00 0.00 0.00 3.85
4552 4722 4.437682 TTTGTCAGAGGAATGTGGACTT 57.562 40.909 0.00 0.00 0.00 3.01
4553 4723 4.437682 TTGTCAGAGGAATGTGGACTTT 57.562 40.909 0.00 0.00 0.00 2.66
4554 4724 4.437682 TGTCAGAGGAATGTGGACTTTT 57.562 40.909 0.00 0.00 0.00 2.27
4555 4725 4.136796 TGTCAGAGGAATGTGGACTTTTG 58.863 43.478 0.00 0.00 0.00 2.44
4570 4740 6.533367 GTGGACTTTTGTTTTGTTAATCTGCA 59.467 34.615 0.00 0.00 0.00 4.41
4663 4863 1.338105 TGATTCAAGACCTGAGTGGCG 60.338 52.381 0.00 0.00 40.22 5.69
4776 4976 0.256752 ACAGCCTAGATTGCATGCCA 59.743 50.000 16.68 4.04 0.00 4.92
4971 5330 3.509137 GAACTGTGGTCGGTGCCGA 62.509 63.158 9.48 9.48 46.87 5.54
5027 5386 3.065233 GTCAAATGTGCCATCTGCGATTA 59.935 43.478 0.00 0.00 45.60 1.75
5028 5387 3.884693 TCAAATGTGCCATCTGCGATTAT 59.115 39.130 0.00 0.00 45.60 1.28
5029 5388 5.049474 GTCAAATGTGCCATCTGCGATTATA 60.049 40.000 0.00 0.00 45.60 0.98
5030 5389 5.706833 TCAAATGTGCCATCTGCGATTATAT 59.293 36.000 0.00 0.00 45.60 0.86
5031 5390 5.808042 AATGTGCCATCTGCGATTATATC 57.192 39.130 0.00 0.00 45.60 1.63
5032 5391 4.270245 TGTGCCATCTGCGATTATATCA 57.730 40.909 0.00 0.00 45.60 2.15
5033 5392 3.996363 TGTGCCATCTGCGATTATATCAC 59.004 43.478 0.00 0.00 45.60 3.06
5034 5393 3.996363 GTGCCATCTGCGATTATATCACA 59.004 43.478 0.00 0.00 45.60 3.58
5035 5394 4.452114 GTGCCATCTGCGATTATATCACAA 59.548 41.667 0.00 0.00 45.60 3.33
5075 5443 3.434940 AAGTTAACCCTTGCCCTACAG 57.565 47.619 0.88 0.00 0.00 2.74
5256 5628 6.373779 GTCCACAGACATGTCTTGTATTTTG 58.626 40.000 25.84 14.79 42.99 2.44
5426 5798 5.649782 ATGTCTCAACAATCCATTGAACC 57.350 39.130 6.29 0.00 40.14 3.62
5442 5814 6.402766 CCATTGAACCGTGTCGTATTTTACAT 60.403 38.462 0.00 0.00 0.00 2.29
5655 6028 2.802816 CTGACCTGGAAGAACAAAGACG 59.197 50.000 0.00 0.00 34.07 4.18
5660 6033 3.125316 CCTGGAAGAACAAAGACGCATAC 59.875 47.826 0.00 0.00 34.07 2.39
5697 6075 2.250031 TCACCAAGGAAAGCATGCATT 58.750 42.857 21.98 15.23 0.00 3.56
5715 6093 4.694982 TGCATTTCGAAAGCTGTATTCTGA 59.305 37.500 23.39 6.54 0.00 3.27
5821 6209 4.625742 ACTTTACACGCTGTATGACATGAC 59.374 41.667 0.00 0.00 32.20 3.06
5822 6210 4.450082 TTACACGCTGTATGACATGACT 57.550 40.909 0.00 0.00 32.20 3.41
5947 6335 8.357290 ACACATACATAAGAGTAGTGTAACCA 57.643 34.615 0.00 0.00 37.80 3.67
6000 6883 5.106118 TGGACAACAACACATTTTCTCGAAA 60.106 36.000 0.00 0.00 0.00 3.46
6002 6885 6.309251 GGACAACAACACATTTTCTCGAAAAA 59.691 34.615 8.69 7.59 42.71 1.94
6018 6901 4.533311 TCGAAAAACAGGATAACCCTAGGT 59.467 41.667 8.29 0.00 45.60 3.08
6019 6902 5.013391 TCGAAAAACAGGATAACCCTAGGTT 59.987 40.000 8.29 4.16 45.60 3.50
6020 6903 5.708697 CGAAAAACAGGATAACCCTAGGTTT 59.291 40.000 8.29 1.58 44.33 3.27
6021 6904 6.208007 CGAAAAACAGGATAACCCTAGGTTTT 59.792 38.462 8.29 3.68 44.33 2.43
6022 6905 6.911250 AAAACAGGATAACCCTAGGTTTTG 57.089 37.500 8.29 0.00 44.33 2.44
6036 6919 4.771590 AGGTTTTGCATGTGATGTACAG 57.228 40.909 0.33 0.00 43.80 2.74
6037 6920 4.144297 AGGTTTTGCATGTGATGTACAGT 58.856 39.130 0.33 0.00 43.80 3.55
6038 6921 5.312895 AGGTTTTGCATGTGATGTACAGTA 58.687 37.500 0.33 0.00 43.80 2.74
6040 6923 5.049060 GGTTTTGCATGTGATGTACAGTACA 60.049 40.000 15.90 15.90 43.80 2.90
6072 6955 1.826720 AGCCAATCGTTGATGCCAAAT 59.173 42.857 0.15 0.00 33.49 2.32
6118 7001 6.096423 AGACCATCCAATCTTCACAATCATTG 59.904 38.462 0.00 0.00 0.00 2.82
6129 7012 5.211174 TCACAATCATTGATGCCAAACAA 57.789 34.783 3.79 0.00 35.67 2.83
6164 7047 1.570501 AGCCAAGGCCATCCAATCTTA 59.429 47.619 5.01 0.00 43.17 2.10
6198 7081 2.684881 CAAACCCTATGACATGTGCTCC 59.315 50.000 1.15 0.00 0.00 4.70
6201 7084 2.511218 ACCCTATGACATGTGCTCCAAT 59.489 45.455 1.15 0.00 0.00 3.16
6219 7102 6.798959 GCTCCAATAACGATCATTTGCTATTC 59.201 38.462 0.00 0.00 0.00 1.75
6273 7156 2.916716 GTGCACTGTTGTTGACAAGTTG 59.083 45.455 10.32 0.00 37.93 3.16
6279 7162 4.462483 ACTGTTGTTGACAAGTTGAACCAT 59.538 37.500 10.54 0.00 37.93 3.55
6282 7165 7.106439 TGTTGTTGACAAGTTGAACCATAAT 57.894 32.000 10.54 0.00 36.39 1.28
6318 7201 1.944177 TAGTCCCTGAGCTGAGCTTT 58.056 50.000 9.00 0.00 39.88 3.51
6333 7216 3.118542 GAGCTTTGAGGCAACACTTTTG 58.881 45.455 0.00 0.00 41.41 2.44
6343 7226 2.418609 GCAACACTTTTGACAAGGGCTT 60.419 45.455 0.00 0.00 0.00 4.35
6362 7245 2.418368 TGACACACCCTGATATTGCC 57.582 50.000 0.00 0.00 0.00 4.52
6370 7253 2.224719 ACCCTGATATTGCCTGATCTGC 60.225 50.000 0.00 0.00 0.00 4.26
6428 7313 3.290948 AGCCCGCATTATTACTTCCAA 57.709 42.857 0.00 0.00 0.00 3.53
6429 7314 2.949644 AGCCCGCATTATTACTTCCAAC 59.050 45.455 0.00 0.00 0.00 3.77
6456 7341 1.203001 TGCCCCTTCTTTGAATCCGTT 60.203 47.619 0.00 0.00 0.00 4.44
6468 7353 5.414789 TTGAATCCGTTAATGACAGAGGA 57.585 39.130 0.00 0.00 0.00 3.71
6515 7400 5.822278 TGACTTAGATCTAGTCGTCATTGC 58.178 41.667 19.33 4.00 35.51 3.56
6522 7407 1.863454 CTAGTCGTCATTGCAGCCATC 59.137 52.381 0.00 0.00 0.00 3.51
6533 7418 2.332117 TGCAGCCATCTGATAGATCCA 58.668 47.619 0.00 0.00 42.95 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.758651 ATCAATTCATCATACATGAACCAATTG 57.241 29.630 17.59 17.59 40.37 2.32
4 5 9.138596 TCATCAATTCATCATACATGAACCAAT 57.861 29.630 0.00 0.00 40.37 3.16
6 7 7.013559 GGTCATCAATTCATCATACATGAACCA 59.986 37.037 0.00 0.00 40.37 3.67
7 8 7.013559 TGGTCATCAATTCATCATACATGAACC 59.986 37.037 0.00 0.00 40.37 3.62
8 9 7.933396 TGGTCATCAATTCATCATACATGAAC 58.067 34.615 0.00 0.00 40.37 3.18
9 10 8.407832 GTTGGTCATCAATTCATCATACATGAA 58.592 33.333 0.00 0.00 41.59 2.57
10 11 7.556996 TGTTGGTCATCAATTCATCATACATGA 59.443 33.333 0.00 0.00 38.24 3.07
11 12 7.708998 TGTTGGTCATCAATTCATCATACATG 58.291 34.615 0.00 0.00 37.73 3.21
12 13 7.885009 TGTTGGTCATCAATTCATCATACAT 57.115 32.000 0.00 0.00 37.73 2.29
13 14 7.885009 ATGTTGGTCATCAATTCATCATACA 57.115 32.000 0.00 0.00 37.73 2.29
14 15 9.590451 AAAATGTTGGTCATCAATTCATCATAC 57.410 29.630 0.00 0.00 37.73 2.39
16 17 8.941977 CAAAAATGTTGGTCATCAATTCATCAT 58.058 29.630 0.00 0.00 37.73 2.45
17 18 7.932491 ACAAAAATGTTGGTCATCAATTCATCA 59.068 29.630 0.00 0.00 37.73 3.07
18 19 8.314143 ACAAAAATGTTGGTCATCAATTCATC 57.686 30.769 0.00 0.00 37.73 2.92
19 20 8.152246 AGACAAAAATGTTGGTCATCAATTCAT 58.848 29.630 5.92 0.00 39.82 2.57
20 21 7.499292 AGACAAAAATGTTGGTCATCAATTCA 58.501 30.769 5.92 0.00 39.82 2.57
21 22 7.951530 AGACAAAAATGTTGGTCATCAATTC 57.048 32.000 5.92 0.00 39.82 2.17
22 23 7.986320 TCAAGACAAAAATGTTGGTCATCAATT 59.014 29.630 5.92 0.00 39.82 2.32
23 24 7.499292 TCAAGACAAAAATGTTGGTCATCAAT 58.501 30.769 5.92 0.00 39.82 2.57
24 25 6.871844 TCAAGACAAAAATGTTGGTCATCAA 58.128 32.000 5.92 0.00 39.82 2.57
25 26 6.462552 TCAAGACAAAAATGTTGGTCATCA 57.537 33.333 5.92 0.00 39.82 3.07
26 27 7.517259 GCTTTCAAGACAAAAATGTTGGTCATC 60.517 37.037 5.92 0.00 39.82 2.92
27 28 6.258507 GCTTTCAAGACAAAAATGTTGGTCAT 59.741 34.615 5.92 0.00 39.82 3.06
28 29 5.580297 GCTTTCAAGACAAAAATGTTGGTCA 59.420 36.000 5.92 0.00 39.82 4.02
29 30 5.006649 GGCTTTCAAGACAAAAATGTTGGTC 59.993 40.000 0.00 0.00 37.89 4.02
30 31 4.875536 GGCTTTCAAGACAAAAATGTTGGT 59.124 37.500 0.00 0.00 32.98 3.67
31 32 4.874966 TGGCTTTCAAGACAAAAATGTTGG 59.125 37.500 0.00 0.00 42.17 3.77
42 43 6.092259 ACGTATCTACAAATGGCTTTCAAGAC 59.908 38.462 0.00 0.00 33.51 3.01
43 44 6.170506 ACGTATCTACAAATGGCTTTCAAGA 58.829 36.000 0.00 0.00 0.00 3.02
44 45 6.422776 ACGTATCTACAAATGGCTTTCAAG 57.577 37.500 0.00 0.00 0.00 3.02
45 46 6.811253 AACGTATCTACAAATGGCTTTCAA 57.189 33.333 0.00 0.00 0.00 2.69
46 47 7.908827 TTAACGTATCTACAAATGGCTTTCA 57.091 32.000 0.00 0.00 0.00 2.69
47 48 9.783256 AAATTAACGTATCTACAAATGGCTTTC 57.217 29.630 0.00 0.00 0.00 2.62
49 50 9.783256 GAAAATTAACGTATCTACAAATGGCTT 57.217 29.630 0.00 0.00 0.00 4.35
50 51 8.403236 GGAAAATTAACGTATCTACAAATGGCT 58.597 33.333 0.00 0.00 0.00 4.75
51 52 7.375017 CGGAAAATTAACGTATCTACAAATGGC 59.625 37.037 0.00 0.00 0.00 4.40
52 53 8.392612 ACGGAAAATTAACGTATCTACAAATGG 58.607 33.333 0.00 0.00 39.30 3.16
53 54 9.205916 CACGGAAAATTAACGTATCTACAAATG 57.794 33.333 0.00 0.00 39.02 2.32
54 55 7.906527 GCACGGAAAATTAACGTATCTACAAAT 59.093 33.333 0.00 0.00 39.02 2.32
55 56 7.095313 TGCACGGAAAATTAACGTATCTACAAA 60.095 33.333 0.00 0.00 39.02 2.83
56 57 6.368243 TGCACGGAAAATTAACGTATCTACAA 59.632 34.615 0.00 0.00 39.02 2.41
57 58 5.868258 TGCACGGAAAATTAACGTATCTACA 59.132 36.000 0.00 0.00 39.02 2.74
58 59 6.335176 TGCACGGAAAATTAACGTATCTAC 57.665 37.500 0.00 0.00 39.02 2.59
59 60 6.368243 TGTTGCACGGAAAATTAACGTATCTA 59.632 34.615 0.00 0.00 39.02 1.98
60 61 5.179742 TGTTGCACGGAAAATTAACGTATCT 59.820 36.000 0.00 0.00 39.02 1.98
61 62 5.383958 TGTTGCACGGAAAATTAACGTATC 58.616 37.500 0.00 0.11 39.02 2.24
62 63 5.359716 TGTTGCACGGAAAATTAACGTAT 57.640 34.783 0.00 0.00 39.02 3.06
63 64 4.808077 TGTTGCACGGAAAATTAACGTA 57.192 36.364 0.00 0.00 39.02 3.57
64 65 3.694535 TGTTGCACGGAAAATTAACGT 57.305 38.095 0.00 0.00 42.17 3.99
65 66 4.928919 CAATGTTGCACGGAAAATTAACG 58.071 39.130 0.00 0.00 0.00 3.18
78 79 7.737878 ATAGAAAAGCTAGTTTGCAATGTTGCA 60.738 33.333 15.84 15.84 46.49 4.08
79 80 6.587608 ATAGAAAAGCTAGTTTGCAATGTTGC 59.412 34.615 10.66 10.66 42.61 4.17
80 81 8.524870 AATAGAAAAGCTAGTTTGCAATGTTG 57.475 30.769 0.00 0.00 34.99 3.33
81 82 9.196552 GAAATAGAAAAGCTAGTTTGCAATGTT 57.803 29.630 0.00 0.00 37.50 2.71
82 83 8.579863 AGAAATAGAAAAGCTAGTTTGCAATGT 58.420 29.630 0.00 0.00 37.50 2.71
83 84 8.976986 AGAAATAGAAAAGCTAGTTTGCAATG 57.023 30.769 0.00 0.00 37.50 2.82
115 116 9.647797 CAGTCGTAATATAATGGCCTACAAATA 57.352 33.333 3.32 0.00 0.00 1.40
116 117 8.372459 TCAGTCGTAATATAATGGCCTACAAAT 58.628 33.333 3.32 0.00 0.00 2.32
117 118 7.728148 TCAGTCGTAATATAATGGCCTACAAA 58.272 34.615 3.32 0.00 0.00 2.83
118 119 7.231925 TCTCAGTCGTAATATAATGGCCTACAA 59.768 37.037 3.32 0.00 0.00 2.41
119 120 6.717997 TCTCAGTCGTAATATAATGGCCTACA 59.282 38.462 3.32 0.00 0.00 2.74
120 121 7.154435 TCTCAGTCGTAATATAATGGCCTAC 57.846 40.000 3.32 0.00 0.00 3.18
121 122 7.770366 TTCTCAGTCGTAATATAATGGCCTA 57.230 36.000 3.32 0.00 0.00 3.93
122 123 6.665992 TTCTCAGTCGTAATATAATGGCCT 57.334 37.500 3.32 0.00 0.00 5.19
123 124 6.183360 GCATTCTCAGTCGTAATATAATGGCC 60.183 42.308 0.00 0.00 0.00 5.36
124 125 6.368791 TGCATTCTCAGTCGTAATATAATGGC 59.631 38.462 0.00 0.00 0.00 4.40
125 126 7.889589 TGCATTCTCAGTCGTAATATAATGG 57.110 36.000 0.00 0.00 0.00 3.16
126 127 9.803130 CTTTGCATTCTCAGTCGTAATATAATG 57.197 33.333 0.00 0.00 0.00 1.90
127 128 9.764363 TCTTTGCATTCTCAGTCGTAATATAAT 57.236 29.630 0.00 0.00 0.00 1.28
128 129 9.594478 TTCTTTGCATTCTCAGTCGTAATATAA 57.406 29.630 0.00 0.00 0.00 0.98
129 130 9.031360 GTTCTTTGCATTCTCAGTCGTAATATA 57.969 33.333 0.00 0.00 0.00 0.86
130 131 7.011482 GGTTCTTTGCATTCTCAGTCGTAATAT 59.989 37.037 0.00 0.00 0.00 1.28
131 132 6.312918 GGTTCTTTGCATTCTCAGTCGTAATA 59.687 38.462 0.00 0.00 0.00 0.98
132 133 5.122396 GGTTCTTTGCATTCTCAGTCGTAAT 59.878 40.000 0.00 0.00 0.00 1.89
133 134 4.451096 GGTTCTTTGCATTCTCAGTCGTAA 59.549 41.667 0.00 0.00 0.00 3.18
134 135 3.994392 GGTTCTTTGCATTCTCAGTCGTA 59.006 43.478 0.00 0.00 0.00 3.43
135 136 2.808543 GGTTCTTTGCATTCTCAGTCGT 59.191 45.455 0.00 0.00 0.00 4.34
136 137 3.070018 AGGTTCTTTGCATTCTCAGTCG 58.930 45.455 0.00 0.00 0.00 4.18
137 138 4.067896 TCAGGTTCTTTGCATTCTCAGTC 58.932 43.478 0.00 0.00 0.00 3.51
138 139 4.090761 TCAGGTTCTTTGCATTCTCAGT 57.909 40.909 0.00 0.00 0.00 3.41
139 140 5.399858 CATTCAGGTTCTTTGCATTCTCAG 58.600 41.667 0.00 0.00 0.00 3.35
140 141 4.219070 CCATTCAGGTTCTTTGCATTCTCA 59.781 41.667 0.00 0.00 0.00 3.27
141 142 4.741342 CCATTCAGGTTCTTTGCATTCTC 58.259 43.478 0.00 0.00 0.00 2.87
142 143 4.796038 CCATTCAGGTTCTTTGCATTCT 57.204 40.909 0.00 0.00 0.00 2.40
157 158 9.920946 AGGATAAGCTTAAATCTTTACCATTCA 57.079 29.630 10.85 0.00 0.00 2.57
159 160 9.920946 TGAGGATAAGCTTAAATCTTTACCATT 57.079 29.630 10.85 0.00 0.00 3.16
161 162 9.920946 AATGAGGATAAGCTTAAATCTTTACCA 57.079 29.630 10.85 3.64 0.00 3.25
167 168 9.479549 TGGAAAAATGAGGATAAGCTTAAATCT 57.520 29.630 10.85 8.15 0.00 2.40
168 169 9.741647 CTGGAAAAATGAGGATAAGCTTAAATC 57.258 33.333 10.85 5.44 0.00 2.17
169 170 8.200120 GCTGGAAAAATGAGGATAAGCTTAAAT 58.800 33.333 10.85 0.00 0.00 1.40
170 171 7.397192 AGCTGGAAAAATGAGGATAAGCTTAAA 59.603 33.333 10.85 0.00 34.99 1.52
171 172 6.891908 AGCTGGAAAAATGAGGATAAGCTTAA 59.108 34.615 10.85 0.00 34.99 1.85
172 173 6.426587 AGCTGGAAAAATGAGGATAAGCTTA 58.573 36.000 8.99 8.99 34.99 3.09
173 174 5.267587 AGCTGGAAAAATGAGGATAAGCTT 58.732 37.500 3.48 3.48 34.99 3.74
174 175 4.864726 AGCTGGAAAAATGAGGATAAGCT 58.135 39.130 0.00 0.00 33.80 3.74
175 176 5.009110 GGTAGCTGGAAAAATGAGGATAAGC 59.991 44.000 0.00 0.00 0.00 3.09
176 177 5.532779 GGGTAGCTGGAAAAATGAGGATAAG 59.467 44.000 0.00 0.00 0.00 1.73
177 178 5.044476 TGGGTAGCTGGAAAAATGAGGATAA 60.044 40.000 0.00 0.00 0.00 1.75
178 179 4.476846 TGGGTAGCTGGAAAAATGAGGATA 59.523 41.667 0.00 0.00 0.00 2.59
179 180 3.269381 TGGGTAGCTGGAAAAATGAGGAT 59.731 43.478 0.00 0.00 0.00 3.24
180 181 2.647299 TGGGTAGCTGGAAAAATGAGGA 59.353 45.455 0.00 0.00 0.00 3.71
181 182 3.019564 CTGGGTAGCTGGAAAAATGAGG 58.980 50.000 0.00 0.00 0.00 3.86
182 183 3.019564 CCTGGGTAGCTGGAAAAATGAG 58.980 50.000 0.00 0.00 0.00 2.90
183 184 2.378547 ACCTGGGTAGCTGGAAAAATGA 59.621 45.455 0.00 0.00 0.00 2.57
184 185 2.755103 GACCTGGGTAGCTGGAAAAATG 59.245 50.000 0.00 0.00 0.00 2.32
185 186 2.649816 AGACCTGGGTAGCTGGAAAAAT 59.350 45.455 0.00 0.00 0.00 1.82
186 187 2.062636 AGACCTGGGTAGCTGGAAAAA 58.937 47.619 0.00 0.00 0.00 1.94
187 188 1.742308 AGACCTGGGTAGCTGGAAAA 58.258 50.000 0.00 0.00 0.00 2.29
188 189 1.628846 GAAGACCTGGGTAGCTGGAAA 59.371 52.381 0.00 0.00 0.00 3.13
189 190 1.203313 AGAAGACCTGGGTAGCTGGAA 60.203 52.381 0.00 0.00 0.00 3.53
190 191 0.413832 AGAAGACCTGGGTAGCTGGA 59.586 55.000 0.00 0.00 0.00 3.86
191 192 1.280457 AAGAAGACCTGGGTAGCTGG 58.720 55.000 0.00 0.00 0.00 4.85
192 193 4.080863 ACATTAAGAAGACCTGGGTAGCTG 60.081 45.833 0.00 0.00 0.00 4.24
193 194 4.104831 ACATTAAGAAGACCTGGGTAGCT 58.895 43.478 0.00 0.00 0.00 3.32
194 195 4.489306 ACATTAAGAAGACCTGGGTAGC 57.511 45.455 0.00 0.00 0.00 3.58
195 196 4.636206 GCAACATTAAGAAGACCTGGGTAG 59.364 45.833 0.00 0.00 0.00 3.18
196 197 4.566907 GGCAACATTAAGAAGACCTGGGTA 60.567 45.833 0.00 0.00 0.00 3.69
197 198 3.421844 GCAACATTAAGAAGACCTGGGT 58.578 45.455 0.00 0.00 0.00 4.51
198 199 2.755103 GGCAACATTAAGAAGACCTGGG 59.245 50.000 0.00 0.00 0.00 4.45
199 200 2.420022 CGGCAACATTAAGAAGACCTGG 59.580 50.000 0.00 0.00 0.00 4.45
200 201 3.334691 TCGGCAACATTAAGAAGACCTG 58.665 45.455 0.00 0.00 0.00 4.00
201 202 3.695830 TCGGCAACATTAAGAAGACCT 57.304 42.857 0.00 0.00 0.00 3.85
202 203 4.965119 AATCGGCAACATTAAGAAGACC 57.035 40.909 0.00 0.00 0.00 3.85
203 204 7.472543 ACAATAATCGGCAACATTAAGAAGAC 58.527 34.615 0.00 0.00 0.00 3.01
204 205 7.465379 CGACAATAATCGGCAACATTAAGAAGA 60.465 37.037 0.00 0.00 38.47 2.87
205 206 6.628856 CGACAATAATCGGCAACATTAAGAAG 59.371 38.462 0.00 0.00 38.47 2.85
206 207 6.092944 ACGACAATAATCGGCAACATTAAGAA 59.907 34.615 0.00 0.00 46.56 2.52
207 208 5.583061 ACGACAATAATCGGCAACATTAAGA 59.417 36.000 0.00 0.00 46.56 2.10
208 209 5.806286 ACGACAATAATCGGCAACATTAAG 58.194 37.500 0.00 0.00 46.56 1.85
209 210 5.804692 ACGACAATAATCGGCAACATTAA 57.195 34.783 0.00 0.00 46.56 1.40
218 219 5.910166 CAGAGTCTAAGACGACAATAATCGG 59.090 44.000 0.00 0.00 46.56 4.18
220 221 7.699566 ACTCAGAGTCTAAGACGACAATAATC 58.300 38.462 0.00 0.00 37.67 1.75
221 222 7.633193 ACTCAGAGTCTAAGACGACAATAAT 57.367 36.000 0.00 0.00 37.67 1.28
222 223 7.174426 TCAACTCAGAGTCTAAGACGACAATAA 59.826 37.037 2.72 0.00 37.67 1.40
223 224 6.653740 TCAACTCAGAGTCTAAGACGACAATA 59.346 38.462 2.72 0.00 37.67 1.90
224 225 5.473846 TCAACTCAGAGTCTAAGACGACAAT 59.526 40.000 2.72 0.00 37.67 2.71
225 226 4.820173 TCAACTCAGAGTCTAAGACGACAA 59.180 41.667 2.72 0.00 37.67 3.18
226 227 4.213694 GTCAACTCAGAGTCTAAGACGACA 59.786 45.833 2.72 0.00 37.67 4.35
227 228 4.453136 AGTCAACTCAGAGTCTAAGACGAC 59.547 45.833 2.72 3.32 37.67 4.34
228 229 4.643463 AGTCAACTCAGAGTCTAAGACGA 58.357 43.478 2.72 0.00 37.67 4.20
229 230 5.180492 AGAAGTCAACTCAGAGTCTAAGACG 59.820 44.000 2.72 0.00 37.67 4.18
230 231 6.569179 AGAAGTCAACTCAGAGTCTAAGAC 57.431 41.667 2.72 9.86 0.00 3.01
231 232 8.569641 GTTAAGAAGTCAACTCAGAGTCTAAGA 58.430 37.037 2.72 0.00 0.00 2.10
232 233 8.353684 TGTTAAGAAGTCAACTCAGAGTCTAAG 58.646 37.037 2.72 0.00 0.00 2.18
233 234 8.234136 TGTTAAGAAGTCAACTCAGAGTCTAA 57.766 34.615 2.72 0.00 0.00 2.10
234 235 7.818997 TGTTAAGAAGTCAACTCAGAGTCTA 57.181 36.000 2.72 0.00 0.00 2.59
235 236 6.716934 TGTTAAGAAGTCAACTCAGAGTCT 57.283 37.500 2.72 0.00 0.00 3.24
236 237 6.074782 CGTTGTTAAGAAGTCAACTCAGAGTC 60.075 42.308 2.72 0.00 39.14 3.36
237 238 5.749109 CGTTGTTAAGAAGTCAACTCAGAGT 59.251 40.000 0.00 0.00 39.14 3.24
238 239 5.977725 TCGTTGTTAAGAAGTCAACTCAGAG 59.022 40.000 0.00 0.00 39.14 3.35
239 240 5.898174 TCGTTGTTAAGAAGTCAACTCAGA 58.102 37.500 0.00 0.00 39.14 3.27
240 241 6.771188 ATCGTTGTTAAGAAGTCAACTCAG 57.229 37.500 0.00 0.00 39.14 3.35
241 242 8.827177 ATAATCGTTGTTAAGAAGTCAACTCA 57.173 30.769 0.00 0.00 39.14 3.41
243 244 9.148104 GGTATAATCGTTGTTAAGAAGTCAACT 57.852 33.333 0.00 0.00 39.14 3.16
244 245 8.928733 TGGTATAATCGTTGTTAAGAAGTCAAC 58.071 33.333 0.00 0.00 38.30 3.18
245 246 8.928733 GTGGTATAATCGTTGTTAAGAAGTCAA 58.071 33.333 0.00 0.00 0.00 3.18
246 247 8.089597 TGTGGTATAATCGTTGTTAAGAAGTCA 58.910 33.333 0.00 0.00 0.00 3.41
247 248 8.470040 TGTGGTATAATCGTTGTTAAGAAGTC 57.530 34.615 0.00 0.00 0.00 3.01
297 298 9.878599 CGACATACAAAAGAAGACAACTAATTT 57.121 29.630 0.00 0.00 0.00 1.82
298 299 9.268268 TCGACATACAAAAGAAGACAACTAATT 57.732 29.630 0.00 0.00 0.00 1.40
299 300 8.827177 TCGACATACAAAAGAAGACAACTAAT 57.173 30.769 0.00 0.00 0.00 1.73
300 301 8.708742 CATCGACATACAAAAGAAGACAACTAA 58.291 33.333 0.00 0.00 0.00 2.24
301 302 7.870954 ACATCGACATACAAAAGAAGACAACTA 59.129 33.333 0.00 0.00 0.00 2.24
302 303 6.706270 ACATCGACATACAAAAGAAGACAACT 59.294 34.615 0.00 0.00 0.00 3.16
303 304 6.888430 ACATCGACATACAAAAGAAGACAAC 58.112 36.000 0.00 0.00 0.00 3.32
304 305 7.490962 AACATCGACATACAAAAGAAGACAA 57.509 32.000 0.00 0.00 0.00 3.18
305 306 7.870954 AGTAACATCGACATACAAAAGAAGACA 59.129 33.333 0.00 0.00 0.00 3.41
306 307 8.240883 AGTAACATCGACATACAAAAGAAGAC 57.759 34.615 0.00 0.00 0.00 3.01
307 308 8.304596 AGAGTAACATCGACATACAAAAGAAGA 58.695 33.333 0.00 0.00 0.00 2.87
308 309 8.467402 AGAGTAACATCGACATACAAAAGAAG 57.533 34.615 0.00 0.00 0.00 2.85
309 310 9.917129 TTAGAGTAACATCGACATACAAAAGAA 57.083 29.630 0.00 0.00 0.00 2.52
310 311 9.917129 TTTAGAGTAACATCGACATACAAAAGA 57.083 29.630 0.00 0.00 0.00 2.52
315 316 9.309516 GGATTTTTAGAGTAACATCGACATACA 57.690 33.333 0.00 0.00 0.00 2.29
316 317 8.477709 CGGATTTTTAGAGTAACATCGACATAC 58.522 37.037 0.00 0.00 0.00 2.39
317 318 8.192774 ACGGATTTTTAGAGTAACATCGACATA 58.807 33.333 0.00 0.00 0.00 2.29
318 319 7.010183 CACGGATTTTTAGAGTAACATCGACAT 59.990 37.037 0.00 0.00 0.00 3.06
319 320 6.309494 CACGGATTTTTAGAGTAACATCGACA 59.691 38.462 0.00 0.00 0.00 4.35
320 321 6.529125 TCACGGATTTTTAGAGTAACATCGAC 59.471 38.462 0.00 0.00 0.00 4.20
321 322 6.529125 GTCACGGATTTTTAGAGTAACATCGA 59.471 38.462 0.00 0.00 0.00 3.59
322 323 6.309494 TGTCACGGATTTTTAGAGTAACATCG 59.691 38.462 0.00 0.00 0.00 3.84
323 324 7.591006 TGTCACGGATTTTTAGAGTAACATC 57.409 36.000 0.00 0.00 0.00 3.06
324 325 9.832445 ATATGTCACGGATTTTTAGAGTAACAT 57.168 29.630 0.00 0.00 0.00 2.71
325 326 9.661563 AATATGTCACGGATTTTTAGAGTAACA 57.338 29.630 0.00 0.00 0.00 2.41
327 328 9.321562 GGAATATGTCACGGATTTTTAGAGTAA 57.678 33.333 0.00 0.00 0.00 2.24
328 329 8.701895 AGGAATATGTCACGGATTTTTAGAGTA 58.298 33.333 0.00 0.00 0.00 2.59
329 330 7.495934 CAGGAATATGTCACGGATTTTTAGAGT 59.504 37.037 0.00 0.00 0.00 3.24
330 331 7.519008 GCAGGAATATGTCACGGATTTTTAGAG 60.519 40.741 0.00 0.00 0.00 2.43
331 332 6.260050 GCAGGAATATGTCACGGATTTTTAGA 59.740 38.462 0.00 0.00 0.00 2.10
332 333 6.038161 TGCAGGAATATGTCACGGATTTTTAG 59.962 38.462 0.00 0.00 0.00 1.85
333 334 5.883115 TGCAGGAATATGTCACGGATTTTTA 59.117 36.000 0.00 0.00 0.00 1.52
334 335 4.704540 TGCAGGAATATGTCACGGATTTTT 59.295 37.500 0.00 0.00 0.00 1.94
335 336 4.269183 TGCAGGAATATGTCACGGATTTT 58.731 39.130 0.00 0.00 0.00 1.82
336 337 3.879295 CTGCAGGAATATGTCACGGATTT 59.121 43.478 5.57 0.00 0.00 2.17
337 338 3.470709 CTGCAGGAATATGTCACGGATT 58.529 45.455 5.57 0.00 0.00 3.01
338 339 2.808202 GCTGCAGGAATATGTCACGGAT 60.808 50.000 17.12 0.00 0.00 4.18
339 340 1.473257 GCTGCAGGAATATGTCACGGA 60.473 52.381 17.12 0.00 0.00 4.69
340 341 0.940126 GCTGCAGGAATATGTCACGG 59.060 55.000 17.12 0.00 0.00 4.94
341 342 1.655484 TGCTGCAGGAATATGTCACG 58.345 50.000 17.12 0.00 0.00 4.35
342 343 3.961182 CATTGCTGCAGGAATATGTCAC 58.039 45.455 29.92 3.48 34.24 3.67
363 364 2.154798 TACTAGATGATGCCCCGCGC 62.155 60.000 0.00 0.00 38.31 6.86
364 365 0.532573 ATACTAGATGATGCCCCGCG 59.467 55.000 0.00 0.00 0.00 6.46
365 366 1.550524 TCATACTAGATGATGCCCCGC 59.449 52.381 0.00 0.00 0.00 6.13
366 367 3.790091 CATCATACTAGATGATGCCCCG 58.210 50.000 21.64 7.86 46.51 5.73
374 375 6.616017 ACATACGCACTCATCATACTAGATG 58.384 40.000 0.00 0.00 45.28 2.90
375 376 6.657117 AGACATACGCACTCATCATACTAGAT 59.343 38.462 0.00 0.00 0.00 1.98
376 377 5.998363 AGACATACGCACTCATCATACTAGA 59.002 40.000 0.00 0.00 0.00 2.43
377 378 6.082984 CAGACATACGCACTCATCATACTAG 58.917 44.000 0.00 0.00 0.00 2.57
378 379 5.531287 ACAGACATACGCACTCATCATACTA 59.469 40.000 0.00 0.00 0.00 1.82
379 380 4.339530 ACAGACATACGCACTCATCATACT 59.660 41.667 0.00 0.00 0.00 2.12
380 381 4.442403 CACAGACATACGCACTCATCATAC 59.558 45.833 0.00 0.00 0.00 2.39
381 382 4.097892 ACACAGACATACGCACTCATCATA 59.902 41.667 0.00 0.00 0.00 2.15
382 383 3.118992 ACACAGACATACGCACTCATCAT 60.119 43.478 0.00 0.00 0.00 2.45
383 384 2.231235 ACACAGACATACGCACTCATCA 59.769 45.455 0.00 0.00 0.00 3.07
384 385 2.881074 ACACAGACATACGCACTCATC 58.119 47.619 0.00 0.00 0.00 2.92
385 386 3.319137 AACACAGACATACGCACTCAT 57.681 42.857 0.00 0.00 0.00 2.90
386 387 2.812358 AACACAGACATACGCACTCA 57.188 45.000 0.00 0.00 0.00 3.41
387 388 5.585500 TTTTAACACAGACATACGCACTC 57.415 39.130 0.00 0.00 0.00 3.51
388 389 5.994887 TTTTTAACACAGACATACGCACT 57.005 34.783 0.00 0.00 0.00 4.40
410 411 2.288518 ACGCGGTGGCATTATTGTTTTT 60.289 40.909 12.47 0.00 39.92 1.94
411 412 1.271102 ACGCGGTGGCATTATTGTTTT 59.729 42.857 12.47 0.00 39.92 2.43
415 416 0.449786 TTCACGCGGTGGCATTATTG 59.550 50.000 12.47 0.00 39.92 1.90
418 419 1.666700 GTTATTCACGCGGTGGCATTA 59.333 47.619 12.47 0.00 39.92 1.90
515 516 1.005394 GACGCGGTGAAGGAAAGGA 60.005 57.895 12.47 0.00 0.00 3.36
518 519 1.005394 GGAGACGCGGTGAAGGAAA 60.005 57.895 12.47 0.00 0.00 3.13
759 765 2.004808 ATCTCGATCGTGAAGCGGCA 62.005 55.000 22.16 0.00 41.72 5.69
858 868 1.135731 GACGAGGTCGACAGAGCAG 59.864 63.158 18.91 4.64 46.62 4.24
1177 1215 4.765856 ACCTCAGGATGGTATATACACGTC 59.234 45.833 14.70 13.06 35.80 4.34
1270 1308 7.868415 AGAGTGTACTCACAAATCTTTCTACAC 59.132 37.037 13.95 0.00 46.01 2.90
1493 1534 5.118286 CACTTGGCCTTTTGAGAACAAATT 58.882 37.500 3.32 0.00 43.99 1.82
1572 1613 5.799827 TCCAACCCAAATGAACTTTAAGG 57.200 39.130 0.00 0.00 0.00 2.69
1573 1614 7.092716 CAGATCCAACCCAAATGAACTTTAAG 58.907 38.462 0.00 0.00 0.00 1.85
1582 1623 7.939039 AGTGTATATACAGATCCAACCCAAATG 59.061 37.037 15.93 0.00 36.78 2.32
1664 1705 9.590451 AAATAATTGCATGTACAGATCCAAAAG 57.410 29.630 0.33 0.00 0.00 2.27
1665 1706 9.368674 CAAATAATTGCATGTACAGATCCAAAA 57.631 29.630 0.33 0.00 0.00 2.44
1666 1707 8.530311 ACAAATAATTGCATGTACAGATCCAAA 58.470 29.630 0.33 0.00 40.34 3.28
1692 1734 7.976712 ACATAAAACTAACCACTAACCCAGTA 58.023 34.615 0.00 0.00 34.98 2.74
1721 1763 8.668510 ATCAACAGAGCAGTTATAATTCGAAT 57.331 30.769 4.39 4.39 0.00 3.34
1766 1810 4.636206 GGTACAATTCTGGGTTCTTGCTAG 59.364 45.833 0.00 0.00 0.00 3.42
1889 1933 8.899427 TTGACTTTGGAAAAATCAAATATGCA 57.101 26.923 0.00 0.00 34.19 3.96
1917 1961 9.762381 TCCCATAAACTTGGTCAAACTTATAAT 57.238 29.630 0.00 0.00 34.77 1.28
2086 2130 1.737793 GCGGTTTGACAGTTGGGATAG 59.262 52.381 0.00 0.00 0.00 2.08
2105 2150 2.385803 TGGTAAGCAGGAGGTAGTAGC 58.614 52.381 0.00 0.00 0.00 3.58
2108 2153 3.182152 ACATTGGTAAGCAGGAGGTAGT 58.818 45.455 0.00 0.00 0.00 2.73
2154 2199 9.465199 TGATGATCCAAGATTCTTGTGAAAATA 57.535 29.630 21.75 9.42 35.63 1.40
2222 2268 3.295093 TGCAGGAATTCAACAACTCCAA 58.705 40.909 7.93 0.00 0.00 3.53
2241 2287 3.761481 GCACGGAGATGCATTATGC 57.239 52.632 10.65 10.65 45.39 3.14
2288 2344 6.077322 TGGATTGGACTTCTCAAAGGAAAAT 58.923 36.000 0.00 0.00 36.78 1.82
2385 2441 2.815503 TCATAGATGGCGCATTTGGATG 59.184 45.455 10.83 5.40 36.32 3.51
2387 2443 2.636647 TCATAGATGGCGCATTTGGA 57.363 45.000 10.83 0.00 0.00 3.53
2388 2444 5.571784 AATATCATAGATGGCGCATTTGG 57.428 39.130 10.83 0.00 0.00 3.28
2412 2471 4.508124 CCCGCAGAGTATTTCAAGACATAC 59.492 45.833 0.00 0.00 0.00 2.39
2429 2488 2.509052 TCGAACTATGAATCCCGCAG 57.491 50.000 0.00 0.00 0.00 5.18
2430 2489 2.102420 ACATCGAACTATGAATCCCGCA 59.898 45.455 0.00 0.00 0.00 5.69
2451 2510 9.361315 CAGAAAATAATGCAAGACAATGAATGA 57.639 29.630 0.00 0.00 0.00 2.57
2542 2601 4.040217 GGATCTCATCTGAGTATGGTTGCT 59.960 45.833 7.07 0.00 42.60 3.91
2556 2615 3.951775 AGATAGCCAACGGATCTCATC 57.048 47.619 0.00 0.00 0.00 2.92
2679 2758 7.448469 ACTGATGCAACTAGTTGTTAATCCTTT 59.552 33.333 30.90 16.69 42.31 3.11
2718 2797 7.229506 CCTGTGAAGAAGATGAAAACCTACTTT 59.770 37.037 0.00 0.00 0.00 2.66
2727 2806 4.141505 TGGTGACCTGTGAAGAAGATGAAA 60.142 41.667 2.11 0.00 0.00 2.69
2803 2889 0.394565 ATATGACGGGAGAGCAAGGC 59.605 55.000 0.00 0.00 0.00 4.35
2865 2951 3.510388 TTGACACGTTCAATGGCAAAA 57.490 38.095 8.47 0.00 42.17 2.44
2887 2973 0.673437 AACATCCAAACGGTGCAAGG 59.327 50.000 0.00 0.00 0.00 3.61
3119 3225 1.078143 GAGCTTGGTGGGCGATCTT 60.078 57.895 0.00 0.00 34.52 2.40
3219 3325 2.034532 TCTCCTCGCCGTGTACCA 59.965 61.111 0.00 0.00 0.00 3.25
3316 3422 1.270571 GGGATCGGGAGAAATCTCTGC 60.271 57.143 10.09 0.00 45.37 4.26
3467 3573 1.122632 TGTTGTTGCCCTAGTCCCGA 61.123 55.000 0.00 0.00 0.00 5.14
3518 3669 0.599204 GAGGAACGACGCTGGTTTGA 60.599 55.000 0.00 0.00 0.00 2.69
3533 3684 1.758514 GCGAGACAGGATGGGAGGA 60.759 63.158 0.00 0.00 43.62 3.71
3556 3707 3.520623 GCCATTCCTTAGGGCATGT 57.479 52.632 0.00 0.00 46.92 3.21
3603 3754 1.899534 GCCGGAGCTCGAGGTAGAT 60.900 63.158 18.63 0.00 42.43 1.98
3640 3791 1.903877 AAGGGATCCTGTGCTGGACG 61.904 60.000 12.58 0.00 39.17 4.79
3641 3792 0.107459 GAAGGGATCCTGTGCTGGAC 60.107 60.000 12.58 0.00 39.17 4.02
3642 3793 1.274703 GGAAGGGATCCTGTGCTGGA 61.275 60.000 12.58 0.35 45.56 3.86
3643 3794 1.225704 GGAAGGGATCCTGTGCTGG 59.774 63.158 12.58 0.00 45.56 4.85
3644 3795 4.972875 GGAAGGGATCCTGTGCTG 57.027 61.111 12.58 0.00 45.56 4.41
3653 3804 1.075151 GAGACGGGGAGGAAGGGAT 60.075 63.158 0.00 0.00 0.00 3.85
3654 3805 2.363361 GAGACGGGGAGGAAGGGA 59.637 66.667 0.00 0.00 0.00 4.20
3703 3862 2.177518 AGGGTGGAGACAGGGAGGA 61.178 63.158 0.00 0.00 44.46 3.71
3706 3865 1.079256 CTCAGGGTGGAGACAGGGA 59.921 63.158 0.00 0.00 44.46 4.20
3710 3869 1.610673 GGAGCTCAGGGTGGAGACA 60.611 63.158 17.19 0.00 37.05 3.41
3957 4126 2.989639 CAATGAGGAGGCCGGACA 59.010 61.111 11.69 0.00 0.00 4.02
3976 4145 0.539051 AGACTTTGCCAGGAGATCGG 59.461 55.000 0.00 0.00 0.00 4.18
4007 4176 1.298859 GGATGGTCAACGTGAGGCAC 61.299 60.000 0.00 0.00 0.00 5.01
4039 4208 8.890718 CACAGACTTGATATTGAGATTGAATGT 58.109 33.333 0.00 0.00 0.00 2.71
4047 4216 5.185056 TCGGAACACAGACTTGATATTGAGA 59.815 40.000 0.00 0.00 0.00 3.27
4191 4360 6.713450 TGGAAAACATAGGACAGAAAACTACC 59.287 38.462 0.00 0.00 0.00 3.18
4550 4720 7.401080 CCAACTGCAGATTAACAAAACAAAAG 58.599 34.615 23.35 0.00 0.00 2.27
4551 4721 6.183360 GCCAACTGCAGATTAACAAAACAAAA 60.183 34.615 23.35 0.00 40.77 2.44
4552 4722 5.293079 GCCAACTGCAGATTAACAAAACAAA 59.707 36.000 23.35 0.00 40.77 2.83
4553 4723 4.808364 GCCAACTGCAGATTAACAAAACAA 59.192 37.500 23.35 0.00 40.77 2.83
4554 4724 4.367450 GCCAACTGCAGATTAACAAAACA 58.633 39.130 23.35 0.00 40.77 2.83
4555 4725 4.972286 GCCAACTGCAGATTAACAAAAC 57.028 40.909 23.35 0.00 40.77 2.43
4570 4740 4.343231 TGGATGACACATATTTGCCAACT 58.657 39.130 0.00 0.00 0.00 3.16
4635 4835 6.652481 CACTCAGGTCTTGAATCAGTATTTGT 59.348 38.462 0.00 0.00 34.81 2.83
4663 4863 8.607441 TGCTATCATTCTAAACCATATCACAC 57.393 34.615 0.00 0.00 0.00 3.82
5030 5389 9.952030 TTACTCCAGTATTTGTGATATTTGTGA 57.048 29.630 0.00 0.00 0.00 3.58
5032 5391 9.959721 ACTTACTCCAGTATTTGTGATATTTGT 57.040 29.630 0.00 0.00 0.00 2.83
5256 5628 3.477210 ACTCTCCAGGAACAACTTGTC 57.523 47.619 0.00 0.00 0.00 3.18
5426 5798 5.198116 TCAGCAATGTAAAATACGACACG 57.802 39.130 0.00 0.00 0.00 4.49
5442 5814 5.012239 AGCACTCTAAAATCCAATCAGCAA 58.988 37.500 0.00 0.00 0.00 3.91
5660 6033 4.440880 TGGTGAAATTCCAAAAAGCACTG 58.559 39.130 0.00 0.00 31.50 3.66
5665 6038 6.238456 GCTTTCCTTGGTGAAATTCCAAAAAG 60.238 38.462 12.78 12.78 43.16 2.27
5697 6075 8.390354 CAACATATTCAGAATACAGCTTTCGAA 58.610 33.333 4.91 0.00 0.00 3.71
5762 6140 6.999705 ATAATACCATTTTGTCATGCCCAT 57.000 33.333 0.00 0.00 0.00 4.00
5806 6184 5.536554 AAAAGAAGTCATGTCATACAGCG 57.463 39.130 0.00 0.00 0.00 5.18
5941 6329 9.391006 TGTGGTTAATCTATCAAATCTGGTTAC 57.609 33.333 0.00 0.00 0.00 2.50
5942 6330 9.967451 TTGTGGTTAATCTATCAAATCTGGTTA 57.033 29.630 0.00 0.00 0.00 2.85
5943 6331 8.877864 TTGTGGTTAATCTATCAAATCTGGTT 57.122 30.769 0.00 0.00 0.00 3.67
5944 6332 8.877864 TTTGTGGTTAATCTATCAAATCTGGT 57.122 30.769 0.00 0.00 0.00 4.00
5945 6333 8.408601 CCTTTGTGGTTAATCTATCAAATCTGG 58.591 37.037 5.36 2.03 0.00 3.86
6000 6883 4.770531 GCAAAACCTAGGGTTATCCTGTTT 59.229 41.667 13.82 0.00 46.20 2.83
6002 6885 3.332485 TGCAAAACCTAGGGTTATCCTGT 59.668 43.478 13.82 0.00 46.20 4.00
6018 6901 6.816134 ATGTACTGTACATCACATGCAAAA 57.184 33.333 23.99 0.00 45.83 2.44
6019 6902 6.037062 GCTATGTACTGTACATCACATGCAAA 59.963 38.462 30.65 13.45 45.83 3.68
6020 6903 5.523552 GCTATGTACTGTACATCACATGCAA 59.476 40.000 30.65 14.05 45.83 4.08
6021 6904 5.049828 GCTATGTACTGTACATCACATGCA 58.950 41.667 30.65 14.67 45.83 3.96
6022 6905 5.049828 TGCTATGTACTGTACATCACATGC 58.950 41.667 30.65 25.13 45.83 4.06
6036 6919 5.277345 CGATTGGCTTTACCTTGCTATGTAC 60.277 44.000 0.00 0.00 40.22 2.90
6037 6920 4.814234 CGATTGGCTTTACCTTGCTATGTA 59.186 41.667 0.00 0.00 40.22 2.29
6038 6921 3.627577 CGATTGGCTTTACCTTGCTATGT 59.372 43.478 0.00 0.00 40.22 2.29
6040 6923 3.886123 ACGATTGGCTTTACCTTGCTAT 58.114 40.909 0.00 0.00 40.22 2.97
6041 6924 3.343941 ACGATTGGCTTTACCTTGCTA 57.656 42.857 0.00 0.00 40.22 3.49
6042 6925 2.200373 ACGATTGGCTTTACCTTGCT 57.800 45.000 0.00 0.00 40.22 3.91
6043 6926 2.227865 TCAACGATTGGCTTTACCTTGC 59.772 45.455 0.00 0.00 40.22 4.01
6044 6927 4.414852 CATCAACGATTGGCTTTACCTTG 58.585 43.478 0.00 0.00 40.22 3.61
6072 6955 6.888088 GGTCTTAGTTTTCCTTTAAGCCCATA 59.112 38.462 0.00 0.00 0.00 2.74
6077 6960 6.433093 TGGATGGTCTTAGTTTTCCTTTAAGC 59.567 38.462 0.00 0.00 0.00 3.09
6085 6968 7.174946 TGTGAAGATTGGATGGTCTTAGTTTTC 59.825 37.037 0.00 0.00 34.97 2.29
6164 7047 6.038271 GTCATAGGGTTTGCGATAAGATTGTT 59.962 38.462 0.00 0.00 0.00 2.83
6198 7081 7.800380 GTCCAGAATAGCAAATGATCGTTATTG 59.200 37.037 0.00 0.00 0.00 1.90
6201 7084 6.345298 TGTCCAGAATAGCAAATGATCGTTA 58.655 36.000 0.00 0.00 0.00 3.18
6260 7143 8.253810 TCAAATTATGGTTCAACTTGTCAACAA 58.746 29.630 0.00 0.00 0.00 2.83
6282 7165 8.221944 TCAGGGACTAAAAATCCTAAGTTCAAA 58.778 33.333 0.00 0.00 36.02 2.69
6318 7201 2.426738 CCTTGTCAAAAGTGTTGCCTCA 59.573 45.455 0.00 0.00 0.00 3.86
6333 7216 1.172812 GGGTGTGTCAAGCCCTTGTC 61.173 60.000 7.80 3.51 41.16 3.18
6343 7226 1.915489 AGGCAATATCAGGGTGTGTCA 59.085 47.619 0.00 0.00 0.00 3.58
6353 7236 1.074405 GGGGCAGATCAGGCAATATCA 59.926 52.381 13.70 0.00 35.46 2.15
6376 7259 4.579384 CAGCAACGTGGGTGGGGT 62.579 66.667 14.50 0.00 32.80 4.95
6405 7290 3.072211 GGAAGTAATAATGCGGGCTACC 58.928 50.000 0.00 0.00 0.00 3.18
6428 7313 1.693606 CAAAGAAGGGGCAACAATGGT 59.306 47.619 0.00 0.00 39.74 3.55
6429 7314 1.969923 TCAAAGAAGGGGCAACAATGG 59.030 47.619 0.00 0.00 39.74 3.16
6456 7341 3.791320 AGTGTCCCTTCCTCTGTCATTA 58.209 45.455 0.00 0.00 0.00 1.90
6468 7353 3.257624 CACCTTACGTCTAAGTGTCCCTT 59.742 47.826 0.00 0.00 37.17 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.