Multiple sequence alignment - TraesCS5A01G375500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G375500 chr5A 100.000 5963 0 0 1 5963 573586265 573592227 0.000000e+00 11012.0
1 TraesCS5A01G375500 chr5A 96.970 33 1 0 643 675 640675520 640675488 8.350000e-04 56.5
2 TraesCS5A01G375500 chr5A 100.000 29 0 0 1176 1204 10935179 10935207 3.000000e-03 54.7
3 TraesCS5A01G375500 chr5B 88.493 3372 243 75 837 4145 555150867 555154156 0.000000e+00 3943.0
4 TraesCS5A01G375500 chr5B 94.978 677 25 2 4165 4832 555154239 555154915 0.000000e+00 1053.0
5 TraesCS5A01G375500 chr5B 88.816 304 19 10 5490 5786 555154961 555155256 5.680000e-95 359.0
6 TraesCS5A01G375500 chr5B 94.231 104 4 2 38 139 555149987 555150090 2.220000e-34 158.0
7 TraesCS5A01G375500 chr5B 86.441 118 3 2 672 776 555150646 555150763 3.780000e-22 117.0
8 TraesCS5A01G375500 chr5D 93.790 1417 81 7 2732 4146 454181260 454182671 0.000000e+00 2122.0
9 TraesCS5A01G375500 chr5D 84.317 1830 152 69 837 2600 454179425 454181185 0.000000e+00 1664.0
10 TraesCS5A01G375500 chr5D 94.225 710 28 8 4165 4866 454182722 454183426 0.000000e+00 1072.0
11 TraesCS5A01G375500 chr5D 90.476 483 30 12 5488 5963 454183428 454183901 1.820000e-174 623.0
12 TraesCS5A01G375500 chr5D 84.859 284 13 15 38 313 454178473 454178734 5.930000e-65 259.0
13 TraesCS5A01G375500 chr5D 81.250 176 7 15 618 776 454179148 454179314 1.050000e-22 119.0
14 TraesCS5A01G375500 chr3D 99.358 623 4 0 4866 5488 589256217 589255595 0.000000e+00 1129.0
15 TraesCS5A01G375500 chr3D 99.197 623 5 0 4866 5488 589256951 589257573 0.000000e+00 1123.0
16 TraesCS5A01G375500 chr3B 99.358 623 4 0 4866 5488 201567476 201566854 0.000000e+00 1129.0
17 TraesCS5A01G375500 chr3B 99.358 623 4 0 4866 5488 201568210 201568832 0.000000e+00 1129.0
18 TraesCS5A01G375500 chr3B 99.197 623 5 0 4866 5488 201546094 201545472 0.000000e+00 1123.0
19 TraesCS5A01G375500 chr2D 99.358 623 4 0 4866 5488 591992249 591991627 0.000000e+00 1129.0
20 TraesCS5A01G375500 chr2D 84.189 487 56 11 3459 3944 605653297 605653763 2.530000e-123 453.0
21 TraesCS5A01G375500 chr2D 85.676 370 33 6 3787 4155 605434940 605435290 7.300000e-99 372.0
22 TraesCS5A01G375500 chr2D 92.157 102 5 3 2343 2443 605537063 605537162 2.240000e-29 141.0
23 TraesCS5A01G375500 chr2D 91.089 101 9 0 2343 2443 605635771 605635871 2.900000e-28 137.0
24 TraesCS5A01G375500 chr2D 97.500 40 1 0 4010 4049 605653778 605653817 1.070000e-07 69.4
25 TraesCS5A01G375500 chr2D 97.500 40 1 0 4010 4049 605672085 605672124 1.070000e-07 69.4
26 TraesCS5A01G375500 chr7B 99.197 623 5 0 4866 5488 622431393 622432015 0.000000e+00 1123.0
27 TraesCS5A01G375500 chr6B 99.197 623 5 0 4866 5488 515379996 515380618 0.000000e+00 1123.0
28 TraesCS5A01G375500 chr1B 99.197 623 5 0 4866 5488 421416013 421415391 0.000000e+00 1123.0
29 TraesCS5A01G375500 chr2A 84.394 487 50 7 3459 3944 737042298 737042759 7.040000e-124 455.0
30 TraesCS5A01G375500 chr2A 92.079 101 8 0 2343 2443 736968902 736969002 6.230000e-30 143.0
31 TraesCS5A01G375500 chr2B 82.857 490 57 14 3461 3944 736211001 736211469 1.200000e-111 414.0
32 TraesCS5A01G375500 chr2B 91.500 200 17 0 2948 3147 735882258 735882457 5.890000e-70 276.0
33 TraesCS5A01G375500 chr2B 82.182 275 37 6 3459 3721 736237252 736237526 6.010000e-55 226.0
34 TraesCS5A01G375500 chr2B 90.909 99 9 0 2343 2441 736119469 736119567 3.750000e-27 134.0
35 TraesCS5A01G375500 chr2B 90.196 102 7 3 2343 2443 735949675 735949774 4.850000e-26 130.0
36 TraesCS5A01G375500 chr2B 88.119 101 12 0 2343 2443 736214477 736214577 2.920000e-23 121.0
37 TraesCS5A01G375500 chr2B 93.182 44 3 0 4006 4049 736211480 736211523 1.390000e-06 65.8
38 TraesCS5A01G375500 chr6A 96.970 33 1 0 643 675 617217448 617217480 8.350000e-04 56.5
39 TraesCS5A01G375500 chr1A 96.970 33 1 0 643 675 2647904 2647872 8.350000e-04 56.5
40 TraesCS5A01G375500 chr1A 96.970 33 1 0 643 675 2659088 2659056 8.350000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G375500 chr5A 573586265 573592227 5962 False 11012.000000 11012 100.000000 1 5963 1 chr5A.!!$F2 5962
1 TraesCS5A01G375500 chr5B 555149987 555155256 5269 False 1126.000000 3943 90.591800 38 5786 5 chr5B.!!$F1 5748
2 TraesCS5A01G375500 chr5D 454178473 454183901 5428 False 976.500000 2122 88.152833 38 5963 6 chr5D.!!$F1 5925
3 TraesCS5A01G375500 chr3D 589255595 589256217 622 True 1129.000000 1129 99.358000 4866 5488 1 chr3D.!!$R1 622
4 TraesCS5A01G375500 chr3D 589256951 589257573 622 False 1123.000000 1123 99.197000 4866 5488 1 chr3D.!!$F1 622
5 TraesCS5A01G375500 chr3B 201566854 201567476 622 True 1129.000000 1129 99.358000 4866 5488 1 chr3B.!!$R2 622
6 TraesCS5A01G375500 chr3B 201568210 201568832 622 False 1129.000000 1129 99.358000 4866 5488 1 chr3B.!!$F1 622
7 TraesCS5A01G375500 chr3B 201545472 201546094 622 True 1123.000000 1123 99.197000 4866 5488 1 chr3B.!!$R1 622
8 TraesCS5A01G375500 chr2D 591991627 591992249 622 True 1129.000000 1129 99.358000 4866 5488 1 chr2D.!!$R1 622
9 TraesCS5A01G375500 chr2D 605653297 605653817 520 False 261.200000 453 90.844500 3459 4049 2 chr2D.!!$F5 590
10 TraesCS5A01G375500 chr7B 622431393 622432015 622 False 1123.000000 1123 99.197000 4866 5488 1 chr7B.!!$F1 622
11 TraesCS5A01G375500 chr6B 515379996 515380618 622 False 1123.000000 1123 99.197000 4866 5488 1 chr6B.!!$F1 622
12 TraesCS5A01G375500 chr1B 421415391 421416013 622 True 1123.000000 1123 99.197000 4866 5488 1 chr1B.!!$R1 622
13 TraesCS5A01G375500 chr2B 736211001 736214577 3576 False 200.266667 414 88.052667 2343 4049 3 chr2B.!!$F5 1706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 1013 0.034896 CCAACCCAACTACTCGCACT 59.965 55.000 0.0 0.0 0.00 4.40 F
812 1017 0.108615 CCCAACTACTCGCACTCCTG 60.109 60.000 0.0 0.0 0.00 3.86 F
2108 2446 0.109342 GGGATGCCATCGTTCCTCAT 59.891 55.000 0.0 0.0 0.00 2.90 F
3329 3690 0.320073 CGAAAGCAACTACCGACCCA 60.320 55.000 0.0 0.0 0.00 4.51 F
3437 3798 0.875059 GGCCCAGAAACTTCAGTTCG 59.125 55.000 0.0 0.0 37.25 3.95 F
3984 4350 1.338973 CAATCACTGCTGTTGCCAAGT 59.661 47.619 0.0 0.0 38.71 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2665 3018 0.400213 CCACAGGTAGTTCCTTGCCA 59.600 55.0 0.0 0.0 45.67 4.92 R
2666 3019 0.690762 TCCACAGGTAGTTCCTTGCC 59.309 55.0 0.0 0.0 45.67 4.52 R
3569 3930 0.114364 TGTGCCTACTGAGTCCTGGA 59.886 55.0 0.0 0.0 0.00 3.86 R
4319 5452 0.530288 GCTGCTCGAAGAAGAGGACT 59.470 55.0 0.0 0.0 38.63 3.85 R
4679 5827 0.740164 CGCTCATGCTCTTCTGCTGT 60.740 55.0 0.0 0.0 36.97 4.40 R
5786 8385 1.630148 CAGCGTCCTTAACTTCCTCG 58.370 55.0 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.512573 TGAAATGCATGCATAAACAAACG 57.487 34.783 32.36 0.00 35.31 3.60
24 25 4.987285 TGAAATGCATGCATAAACAAACGT 59.013 33.333 32.36 11.64 35.31 3.99
25 26 5.464722 TGAAATGCATGCATAAACAAACGTT 59.535 32.000 32.36 19.29 35.31 3.99
26 27 4.907188 ATGCATGCATAAACAAACGTTG 57.093 36.364 31.35 0.00 34.49 4.10
27 28 2.474359 TGCATGCATAAACAAACGTTGC 59.526 40.909 18.46 0.00 0.00 4.17
28 29 2.159854 GCATGCATAAACAAACGTTGCC 60.160 45.455 14.21 0.00 0.00 4.52
29 30 2.141535 TGCATAAACAAACGTTGCCC 57.858 45.000 0.00 0.00 0.00 5.36
30 31 1.056869 GCATAAACAAACGTTGCCCG 58.943 50.000 0.00 0.00 44.03 6.13
31 32 1.692296 CATAAACAAACGTTGCCCGG 58.308 50.000 0.00 0.00 42.24 5.73
32 33 0.038983 ATAAACAAACGTTGCCCGGC 60.039 50.000 0.00 1.04 42.24 6.13
33 34 1.102222 TAAACAAACGTTGCCCGGCT 61.102 50.000 11.61 0.00 42.24 5.52
34 35 2.621371 AAACAAACGTTGCCCGGCTG 62.621 55.000 11.61 1.45 42.24 4.85
35 36 3.591835 CAAACGTTGCCCGGCTGT 61.592 61.111 11.61 3.80 42.24 4.40
36 37 2.111460 AAACGTTGCCCGGCTGTA 59.889 55.556 11.61 0.00 42.24 2.74
44 45 2.787567 GCCCGGCTGTACTCTCTCC 61.788 68.421 0.71 0.00 0.00 3.71
84 85 0.813821 GCAGCCCAAGATTTCCAGAC 59.186 55.000 0.00 0.00 0.00 3.51
157 163 4.648626 GCACACTGGCAGGCAGGA 62.649 66.667 26.71 0.00 0.00 3.86
158 164 2.113774 CACACTGGCAGGCAGGAA 59.886 61.111 26.71 0.00 0.00 3.36
159 165 2.113986 ACACTGGCAGGCAGGAAC 59.886 61.111 26.71 0.00 0.00 3.62
160 166 2.674380 CACTGGCAGGCAGGAACC 60.674 66.667 26.71 0.00 0.00 3.62
169 175 2.485795 GGCAGGAACCAACGCACAA 61.486 57.895 0.00 0.00 0.00 3.33
199 205 0.392461 TCCCATACGCACCTTGCTTC 60.392 55.000 0.00 0.00 42.25 3.86
202 208 1.398390 CCATACGCACCTTGCTTCTTC 59.602 52.381 0.00 0.00 42.25 2.87
207 213 2.427095 ACGCACCTTGCTTCTTCTTTTT 59.573 40.909 0.00 0.00 42.25 1.94
253 259 8.533569 AGAAACACCTTCTTTTTCTGGAATAA 57.466 30.769 0.00 0.00 41.97 1.40
288 295 3.596214 ACGCCTTCCAACACATTACTAG 58.404 45.455 0.00 0.00 0.00 2.57
291 298 3.617263 GCCTTCCAACACATTACTAGTCG 59.383 47.826 0.00 0.00 0.00 4.18
300 317 4.863131 ACACATTACTAGTCGTAGCTTTGC 59.137 41.667 0.00 0.00 0.00 3.68
320 362 1.004610 CGATATTTGCGCCTCACACAG 60.005 52.381 4.18 0.00 0.00 3.66
336 378 6.207810 CCTCACACAGGTATAGATTCCTACTC 59.792 46.154 0.00 0.00 37.53 2.59
337 379 6.912426 TCACACAGGTATAGATTCCTACTCT 58.088 40.000 0.00 0.00 32.26 3.24
338 380 8.042286 TCACACAGGTATAGATTCCTACTCTA 57.958 38.462 0.00 0.00 32.26 2.43
355 400 9.725206 TCCTACTCTACTAATTTATTTCCCACT 57.275 33.333 0.00 0.00 0.00 4.00
364 409 4.379339 TTTATTTCCCACTATTTGCGCC 57.621 40.909 4.18 0.00 0.00 6.53
365 410 2.143876 ATTTCCCACTATTTGCGCCT 57.856 45.000 4.18 0.00 0.00 5.52
370 415 1.066002 CCCACTATTTGCGCCTCAATG 59.934 52.381 4.18 0.00 34.12 2.82
394 439 2.746277 AACCAGCCGTGCGATTCC 60.746 61.111 0.00 0.00 0.00 3.01
414 464 1.757306 CAGGCCGCAATATCTCCCT 59.243 57.895 0.00 0.00 0.00 4.20
438 488 6.189677 TGTCGACCAAATAATTGATTGACC 57.810 37.500 14.12 0.00 38.94 4.02
439 489 5.943416 TGTCGACCAAATAATTGATTGACCT 59.057 36.000 14.12 0.00 38.94 3.85
443 534 5.969423 ACCAAATAATTGATTGACCTGCTG 58.031 37.500 6.61 0.00 38.94 4.41
473 564 4.388499 GCCGCTCCCTCCGTTTGA 62.388 66.667 0.00 0.00 0.00 2.69
474 565 2.434359 CCGCTCCCTCCGTTTGAC 60.434 66.667 0.00 0.00 0.00 3.18
475 566 2.809601 CGCTCCCTCCGTTTGACG 60.810 66.667 0.00 0.00 42.11 4.35
476 567 3.119096 GCTCCCTCCGTTTGACGC 61.119 66.667 0.00 0.00 40.91 5.19
504 595 3.509967 ACCAATTGACCCGATTCCTTTTC 59.490 43.478 7.12 0.00 0.00 2.29
505 596 3.763897 CCAATTGACCCGATTCCTTTTCT 59.236 43.478 7.12 0.00 0.00 2.52
506 597 4.947388 CCAATTGACCCGATTCCTTTTCTA 59.053 41.667 7.12 0.00 0.00 2.10
507 598 5.417580 CCAATTGACCCGATTCCTTTTCTAA 59.582 40.000 7.12 0.00 0.00 2.10
508 599 6.096846 CCAATTGACCCGATTCCTTTTCTAAT 59.903 38.462 7.12 0.00 0.00 1.73
509 600 7.363793 CCAATTGACCCGATTCCTTTTCTAATT 60.364 37.037 7.12 0.00 0.00 1.40
527 618 7.581213 TCTAATTTCTTTCTCCTTGCAACAA 57.419 32.000 0.00 0.00 0.00 2.83
528 619 8.006298 TCTAATTTCTTTCTCCTTGCAACAAA 57.994 30.769 0.00 0.00 0.00 2.83
530 621 6.908870 ATTTCTTTCTCCTTGCAACAAAAC 57.091 33.333 0.00 0.00 0.00 2.43
533 624 5.788450 TCTTTCTCCTTGCAACAAAACAAA 58.212 33.333 0.00 0.00 0.00 2.83
535 626 5.854431 TTCTCCTTGCAACAAAACAAAAC 57.146 34.783 0.00 0.00 0.00 2.43
536 627 4.887748 TCTCCTTGCAACAAAACAAAACA 58.112 34.783 0.00 0.00 0.00 2.83
537 628 5.300752 TCTCCTTGCAACAAAACAAAACAA 58.699 33.333 0.00 0.00 0.00 2.83
538 629 5.936956 TCTCCTTGCAACAAAACAAAACAAT 59.063 32.000 0.00 0.00 0.00 2.71
557 648 3.559238 ATTGTCGAGTTGGCAATGAAC 57.441 42.857 9.48 0.70 32.36 3.18
558 649 1.234821 TGTCGAGTTGGCAATGAACC 58.765 50.000 1.92 0.00 0.00 3.62
563 684 0.250901 AGTTGGCAATGAACCGCTCT 60.251 50.000 1.92 0.00 0.00 4.09
590 711 4.101448 AGTCATGGCGCTGTCCCC 62.101 66.667 7.64 0.00 0.00 4.81
609 730 3.139029 GTGACCACGAGCCCTAAAG 57.861 57.895 0.00 0.00 0.00 1.85
612 733 1.275291 TGACCACGAGCCCTAAAGAAG 59.725 52.381 0.00 0.00 0.00 2.85
615 736 2.496470 ACCACGAGCCCTAAAGAAGTAG 59.504 50.000 0.00 0.00 0.00 2.57
618 739 3.695060 CACGAGCCCTAAAGAAGTAGAGA 59.305 47.826 0.00 0.00 0.00 3.10
620 741 4.771054 ACGAGCCCTAAAGAAGTAGAGAAA 59.229 41.667 0.00 0.00 0.00 2.52
621 742 5.245526 ACGAGCCCTAAAGAAGTAGAGAAAA 59.754 40.000 0.00 0.00 0.00 2.29
623 744 6.091034 CGAGCCCTAAAGAAGTAGAGAAAAAC 59.909 42.308 0.00 0.00 0.00 2.43
625 746 6.711194 AGCCCTAAAGAAGTAGAGAAAAACAC 59.289 38.462 0.00 0.00 0.00 3.32
658 800 2.044469 GCTTCCCCTCTCCATCTCCAT 61.044 57.143 0.00 0.00 0.00 3.41
664 806 2.495004 CCCTCTCCATCTCCATCTCCAT 60.495 54.545 0.00 0.00 0.00 3.41
668 810 2.833338 CTCCATCTCCATCTCCATCTCC 59.167 54.545 0.00 0.00 0.00 3.71
669 811 2.180751 TCCATCTCCATCTCCATCTCCA 59.819 50.000 0.00 0.00 0.00 3.86
671 813 2.094100 TCTCCATCTCCATCTCCACC 57.906 55.000 0.00 0.00 0.00 4.61
672 814 1.577729 TCTCCATCTCCATCTCCACCT 59.422 52.381 0.00 0.00 0.00 4.00
673 815 1.969923 CTCCATCTCCATCTCCACCTC 59.030 57.143 0.00 0.00 0.00 3.85
674 816 1.055040 CCATCTCCATCTCCACCTCC 58.945 60.000 0.00 0.00 0.00 4.30
675 817 1.055040 CATCTCCATCTCCACCTCCC 58.945 60.000 0.00 0.00 0.00 4.30
676 818 0.104725 ATCTCCATCTCCACCTCCCC 60.105 60.000 0.00 0.00 0.00 4.81
776 935 1.230324 AGAAACTGCCGTCTTCAAGC 58.770 50.000 6.17 0.00 0.00 4.01
777 936 0.238553 GAAACTGCCGTCTTCAAGCC 59.761 55.000 0.00 0.00 0.00 4.35
778 937 0.179018 AAACTGCCGTCTTCAAGCCT 60.179 50.000 0.00 0.00 0.00 4.58
779 938 0.603975 AACTGCCGTCTTCAAGCCTC 60.604 55.000 0.00 0.00 0.00 4.70
780 939 1.743252 CTGCCGTCTTCAAGCCTCC 60.743 63.158 0.00 0.00 0.00 4.30
781 940 2.177594 CTGCCGTCTTCAAGCCTCCT 62.178 60.000 0.00 0.00 0.00 3.69
782 941 1.448717 GCCGTCTTCAAGCCTCCTC 60.449 63.158 0.00 0.00 0.00 3.71
786 991 0.251634 GTCTTCAAGCCTCCTCCCTG 59.748 60.000 0.00 0.00 0.00 4.45
806 1011 1.373435 CCCAACCCAACTACTCGCA 59.627 57.895 0.00 0.00 0.00 5.10
807 1012 0.953960 CCCAACCCAACTACTCGCAC 60.954 60.000 0.00 0.00 0.00 5.34
808 1013 0.034896 CCAACCCAACTACTCGCACT 59.965 55.000 0.00 0.00 0.00 4.40
809 1014 1.429463 CAACCCAACTACTCGCACTC 58.571 55.000 0.00 0.00 0.00 3.51
810 1015 0.320697 AACCCAACTACTCGCACTCC 59.679 55.000 0.00 0.00 0.00 3.85
811 1016 0.542232 ACCCAACTACTCGCACTCCT 60.542 55.000 0.00 0.00 0.00 3.69
812 1017 0.108615 CCCAACTACTCGCACTCCTG 60.109 60.000 0.00 0.00 0.00 3.86
813 1018 0.737715 CCAACTACTCGCACTCCTGC 60.738 60.000 0.00 0.00 40.38 4.85
814 1019 0.244994 CAACTACTCGCACTCCTGCT 59.755 55.000 0.00 0.00 41.77 4.24
815 1020 0.528470 AACTACTCGCACTCCTGCTC 59.472 55.000 0.00 0.00 41.77 4.26
816 1021 0.322997 ACTACTCGCACTCCTGCTCT 60.323 55.000 0.00 0.00 41.77 4.09
863 1095 0.451783 GCCCACCATTAACTGCTTCG 59.548 55.000 0.00 0.00 0.00 3.79
871 1103 5.967674 CACCATTAACTGCTTCGATTGAATC 59.032 40.000 0.00 0.00 32.61 2.52
884 1116 2.386661 TTGAATCGGTGCTCCTCTTC 57.613 50.000 2.85 6.31 0.00 2.87
965 1199 2.359975 CGCCAAAGGGGTCTCCAC 60.360 66.667 0.00 0.00 39.65 4.02
977 1211 2.127708 GGTCTCCACCTCCAACCATAT 58.872 52.381 0.00 0.00 40.00 1.78
1027 1285 3.605749 TTCTTTCGCGGGGAGCTGG 62.606 63.158 6.13 0.00 45.59 4.85
1097 1355 2.817396 GCCTGAGCTTCCGAGTGC 60.817 66.667 0.00 0.00 35.50 4.40
1104 1373 1.301716 GCTTCCGAGTGCTGGTTGA 60.302 57.895 0.00 0.00 0.00 3.18
1107 1376 2.046892 CCGAGTGCTGGTTGAGGG 60.047 66.667 0.00 0.00 0.00 4.30
1122 1391 1.003233 AGGGTTCTTCTTCTGCGCC 60.003 57.895 4.18 0.00 0.00 6.53
1129 1398 2.219325 CTTCTTCTGCGCCCGAGTCT 62.219 60.000 4.18 0.00 0.00 3.24
1261 1539 2.418976 GGACAGGCGTGGTAAATTTCTC 59.581 50.000 11.67 0.00 0.00 2.87
1294 1573 0.902531 CTTCTTCCCTGTTCGCCCTA 59.097 55.000 0.00 0.00 0.00 3.53
1301 1580 1.473434 CCCTGTTCGCCCTATGTTCTC 60.473 57.143 0.00 0.00 0.00 2.87
1312 1594 3.493503 CCCTATGTTCTCCGCGTTAATTC 59.506 47.826 4.92 0.00 0.00 2.17
1316 1598 1.062148 GTTCTCCGCGTTAATTCAGCC 59.938 52.381 4.92 0.00 0.00 4.85
1331 1618 0.449388 CAGCCTTGATTTCTGCGGTC 59.551 55.000 0.00 0.00 0.00 4.79
1332 1619 0.326264 AGCCTTGATTTCTGCGGTCT 59.674 50.000 0.00 0.00 0.00 3.85
1335 1626 2.678190 GCCTTGATTTCTGCGGTCTACT 60.678 50.000 0.00 0.00 0.00 2.57
1354 1645 4.087892 GCTCGCTCTCCCTTGCCA 62.088 66.667 0.00 0.00 0.00 4.92
1362 1653 1.691434 CTCTCCCTTGCCAGGATAGAC 59.309 57.143 5.14 0.00 44.19 2.59
1364 1655 1.839994 CTCCCTTGCCAGGATAGACAA 59.160 52.381 5.14 0.00 44.19 3.18
1365 1656 2.441001 CTCCCTTGCCAGGATAGACAAT 59.559 50.000 5.14 0.00 44.19 2.71
1366 1657 2.852449 TCCCTTGCCAGGATAGACAATT 59.148 45.455 5.14 0.00 44.19 2.32
1367 1658 2.954318 CCCTTGCCAGGATAGACAATTG 59.046 50.000 5.14 3.24 44.19 2.32
1368 1659 2.954318 CCTTGCCAGGATAGACAATTGG 59.046 50.000 10.83 0.00 44.19 3.16
1370 1661 1.322442 GCCAGGATAGACAATTGGGC 58.678 55.000 10.83 6.37 0.00 5.36
1371 1662 1.986882 CCAGGATAGACAATTGGGCC 58.013 55.000 10.83 0.00 0.00 5.80
1372 1663 1.496429 CCAGGATAGACAATTGGGCCT 59.504 52.381 10.83 6.46 0.00 5.19
1406 1699 1.200948 CTGCCCTTCTTTTGCTGCTAC 59.799 52.381 0.00 0.00 0.00 3.58
1416 1709 2.185004 TTGCTGCTACCTGAAACCTC 57.815 50.000 0.00 0.00 0.00 3.85
1435 1733 6.214177 ACCTCAAGAATTTAGGGGAGAAAA 57.786 37.500 0.00 0.00 34.52 2.29
1448 1746 4.226168 AGGGGAGAAAATAGGACAAGAGTG 59.774 45.833 0.00 0.00 0.00 3.51
1450 1748 3.942115 GGAGAAAATAGGACAAGAGTGGC 59.058 47.826 0.00 0.00 0.00 5.01
1465 1763 2.192861 TGGCTGGTTGGCGTTCTTG 61.193 57.895 0.00 0.00 45.14 3.02
1489 1787 2.407090 GTTTCTGCTCAAATTGGTGCC 58.593 47.619 4.48 0.00 0.00 5.01
1567 1869 3.482783 GACTGCACGGCTTCGCTC 61.483 66.667 0.00 0.00 37.41 5.03
1606 1908 4.192317 AGCTCTGTCTCGAGTTTTGTTTT 58.808 39.130 13.13 0.00 33.55 2.43
1607 1909 4.271291 AGCTCTGTCTCGAGTTTTGTTTTC 59.729 41.667 13.13 0.00 33.55 2.29
1608 1910 4.271291 GCTCTGTCTCGAGTTTTGTTTTCT 59.729 41.667 13.13 0.00 33.55 2.52
1610 1912 6.675728 GCTCTGTCTCGAGTTTTGTTTTCTTT 60.676 38.462 13.13 0.00 33.55 2.52
1611 1913 6.542852 TCTGTCTCGAGTTTTGTTTTCTTTG 58.457 36.000 13.13 0.00 0.00 2.77
1612 1914 6.148811 TCTGTCTCGAGTTTTGTTTTCTTTGT 59.851 34.615 13.13 0.00 0.00 2.83
1641 1943 1.303561 GCCACTGCCACTGATTCCA 60.304 57.895 0.00 0.00 0.00 3.53
1642 1944 0.682209 GCCACTGCCACTGATTCCAT 60.682 55.000 0.00 0.00 0.00 3.41
1643 1945 1.100510 CCACTGCCACTGATTCCATG 58.899 55.000 0.00 0.00 0.00 3.66
1644 1946 1.615116 CCACTGCCACTGATTCCATGT 60.615 52.381 0.00 0.00 0.00 3.21
1645 1947 2.165167 CACTGCCACTGATTCCATGTT 58.835 47.619 0.00 0.00 0.00 2.71
1646 1948 2.163010 CACTGCCACTGATTCCATGTTC 59.837 50.000 0.00 0.00 0.00 3.18
1647 1949 2.224843 ACTGCCACTGATTCCATGTTCA 60.225 45.455 0.00 0.00 0.00 3.18
1648 1950 2.161855 TGCCACTGATTCCATGTTCAC 58.838 47.619 0.00 0.00 0.00 3.18
1649 1951 2.161855 GCCACTGATTCCATGTTCACA 58.838 47.619 0.00 0.00 0.00 3.58
1650 1952 2.756760 GCCACTGATTCCATGTTCACAT 59.243 45.455 0.00 0.00 36.96 3.21
1676 1978 6.399459 GCGTATTTTCAATTGCAAAACGATGA 60.399 34.615 25.62 0.66 0.00 2.92
1683 1985 4.944962 ATTGCAAAACGATGAGATTCGA 57.055 36.364 1.71 0.00 41.62 3.71
1684 1986 4.740741 TTGCAAAACGATGAGATTCGAA 57.259 36.364 0.00 0.00 41.62 3.71
1692 1994 4.541779 ACGATGAGATTCGAATAGCAGAC 58.458 43.478 11.38 9.33 41.62 3.51
1710 2012 3.499918 CAGACTTGGTTTACTTGCTCCTG 59.500 47.826 0.00 0.00 0.00 3.86
1723 2025 0.886563 GCTCCTGCTTGCTTGTCATT 59.113 50.000 0.00 0.00 36.03 2.57
1724 2026 1.271656 GCTCCTGCTTGCTTGTCATTT 59.728 47.619 0.00 0.00 36.03 2.32
1735 2041 5.366829 TGCTTGTCATTTGTGATTGAGAG 57.633 39.130 0.00 0.00 0.00 3.20
1787 2095 4.096833 TCAAATGCTATGCTAGTTGCCAAG 59.903 41.667 0.00 0.00 42.00 3.61
1792 2100 4.706476 TGCTATGCTAGTTGCCAAGAAAAT 59.294 37.500 0.00 0.00 42.00 1.82
1793 2101 5.039333 GCTATGCTAGTTGCCAAGAAAATG 58.961 41.667 0.00 0.00 42.00 2.32
1798 2110 4.681483 GCTAGTTGCCAAGAAAATGTGTTC 59.319 41.667 0.00 0.00 35.15 3.18
1803 2115 5.793026 TGCCAAGAAAATGTGTTCAAAAC 57.207 34.783 0.00 0.00 0.00 2.43
1811 2123 3.518634 ATGTGTTCAAAACAAGGCGTT 57.481 38.095 0.00 0.00 44.16 4.84
1815 2127 2.685897 TGTTCAAAACAAGGCGTTAGCT 59.314 40.909 0.00 0.00 40.13 3.32
1838 2150 6.845782 GCTGGAATTTGAAATTTCGTTTTGTC 59.154 34.615 13.34 5.93 0.00 3.18
1857 2172 2.612212 GTCACCGACACACTTGTTGATT 59.388 45.455 0.00 0.00 39.28 2.57
1859 2174 4.271533 GTCACCGACACACTTGTTGATTAA 59.728 41.667 0.00 0.00 39.28 1.40
1865 2180 7.606456 ACCGACACACTTGTTGATTAAGAATAT 59.394 33.333 0.00 0.00 39.28 1.28
1905 2224 1.993369 GACTTGCGGTATTGCCTGCC 61.993 60.000 5.50 0.00 36.44 4.85
1971 2291 2.871096 TGGTGGGGTGTTATTCACTC 57.129 50.000 0.00 0.00 46.08 3.51
1983 2316 5.938125 GTGTTATTCACTCATTGTACCCACT 59.062 40.000 0.00 0.00 43.13 4.00
2000 2333 5.126067 ACCCACTAATATGCACAGTTGATC 58.874 41.667 0.00 0.00 0.00 2.92
2107 2445 1.526887 GGGATGCCATCGTTCCTCA 59.473 57.895 0.00 0.00 0.00 3.86
2108 2446 0.109342 GGGATGCCATCGTTCCTCAT 59.891 55.000 0.00 0.00 0.00 2.90
2109 2447 1.477558 GGGATGCCATCGTTCCTCATT 60.478 52.381 0.00 0.00 0.00 2.57
2110 2448 2.301346 GGATGCCATCGTTCCTCATTT 58.699 47.619 0.00 0.00 0.00 2.32
2111 2449 2.291741 GGATGCCATCGTTCCTCATTTC 59.708 50.000 0.00 0.00 0.00 2.17
2119 2457 7.078228 GCCATCGTTCCTCATTTCATTTATAC 58.922 38.462 0.00 0.00 0.00 1.47
2121 2459 8.620416 CCATCGTTCCTCATTTCATTTATACAA 58.380 33.333 0.00 0.00 0.00 2.41
2125 2463 8.664798 CGTTCCTCATTTCATTTATACAAGACA 58.335 33.333 0.00 0.00 0.00 3.41
2131 2469 9.791820 TCATTTCATTTATACAAGACAATGCAG 57.208 29.630 0.00 0.00 0.00 4.41
2137 2475 1.696063 ACAAGACAATGCAGCCAACT 58.304 45.000 0.00 0.00 0.00 3.16
2150 2488 8.594687 CAATGCAGCCAACTTGTAATTATTTAC 58.405 33.333 0.00 1.36 38.56 2.01
2184 2522 8.341903 CAGGTTTGGATTTTGTTTTAAATGGAC 58.658 33.333 0.00 0.00 0.00 4.02
2379 2726 1.526686 CTGCACAACAGGACTGCCA 60.527 57.895 0.00 0.00 43.19 4.92
2397 2744 3.146066 GCCAAGTGATGTTACTGTGGAA 58.854 45.455 0.00 0.00 34.02 3.53
2405 2752 1.144093 TGTTACTGTGGAAGTTGGGGG 59.856 52.381 0.00 0.00 40.56 5.40
2446 2793 8.394971 TCATAAGGTAATATGCATTTCCTGTG 57.605 34.615 3.54 10.34 40.10 3.66
2448 2795 9.017509 CATAAGGTAATATGCATTTCCTGTGAT 57.982 33.333 3.54 1.23 40.10 3.06
2453 2800 5.779529 ATATGCATTTCCTGTGATTGTCC 57.220 39.130 3.54 0.00 0.00 4.02
2459 2806 5.390613 CATTTCCTGTGATTGTCCGTAAAC 58.609 41.667 0.00 0.00 0.00 2.01
2460 2807 3.755112 TCCTGTGATTGTCCGTAAACA 57.245 42.857 0.00 0.00 0.00 2.83
2501 2848 7.259161 GCACTAGAAACAGCTACTGTATTACT 58.741 38.462 0.00 1.91 44.62 2.24
2502 2849 8.404000 GCACTAGAAACAGCTACTGTATTACTA 58.596 37.037 0.00 2.85 44.62 1.82
2524 2874 8.320338 ACTATTACTTGTTACTAGAATGCCCT 57.680 34.615 0.00 0.00 0.00 5.19
2533 2883 7.913789 TGTTACTAGAATGCCCTAGAAGAAAA 58.086 34.615 0.00 0.00 38.68 2.29
2600 2953 6.379988 ACATCAAGGTGGACTAACAAACTTTT 59.620 34.615 0.00 0.00 0.00 2.27
2601 2954 6.844097 TCAAGGTGGACTAACAAACTTTTT 57.156 33.333 0.00 0.00 0.00 1.94
2642 2995 7.599630 AACAAACTTTAGTCTGTCGTAACAA 57.400 32.000 0.00 0.00 34.24 2.83
2650 3003 3.555956 AGTCTGTCGTAACAAGCAAACAG 59.444 43.478 0.00 0.00 34.24 3.16
2655 3008 2.610374 TCGTAACAAGCAAACAGTGTCC 59.390 45.455 0.00 0.00 0.00 4.02
2659 3012 3.715628 ACAAGCAAACAGTGTCCATTC 57.284 42.857 0.00 0.00 0.00 2.67
2665 3018 5.133221 AGCAAACAGTGTCCATTCTAAGTT 58.867 37.500 0.00 0.00 0.00 2.66
2666 3019 5.009010 AGCAAACAGTGTCCATTCTAAGTTG 59.991 40.000 0.00 0.00 0.00 3.16
2696 3049 7.571025 GGAACTACCTGTGGATTTATAGGAAA 58.429 38.462 0.00 0.00 33.57 3.13
2735 3088 9.383519 CTTATTAAGAAGGATGAGCAACTTGTA 57.616 33.333 1.73 0.00 0.00 2.41
2736 3089 7.617041 ATTAAGAAGGATGAGCAACTTGTAC 57.383 36.000 0.00 0.00 0.00 2.90
2741 3094 5.483685 AGGATGAGCAACTTGTACTTGTA 57.516 39.130 0.00 0.00 0.00 2.41
2745 3098 5.940192 TGAGCAACTTGTACTTGTATTGG 57.060 39.130 0.00 0.00 0.00 3.16
2748 3101 6.204688 TGAGCAACTTGTACTTGTATTGGAAG 59.795 38.462 0.00 0.00 0.00 3.46
2749 3102 5.473504 AGCAACTTGTACTTGTATTGGAAGG 59.526 40.000 0.00 0.00 0.00 3.46
2751 3104 6.151144 GCAACTTGTACTTGTATTGGAAGGAT 59.849 38.462 0.00 0.00 0.00 3.24
2752 3105 7.309194 GCAACTTGTACTTGTATTGGAAGGATT 60.309 37.037 0.00 0.00 0.00 3.01
2832 3193 5.539955 ACATGCCATTTGTTTACTTTCTCCT 59.460 36.000 0.00 0.00 0.00 3.69
2855 3216 5.008980 TGTGGTCATTCATGCATCTTTACA 58.991 37.500 0.00 0.00 0.00 2.41
2879 3240 9.841295 ACAGATTTTTCTTACCTTGTACTTGTA 57.159 29.630 0.00 0.00 0.00 2.41
2891 3252 6.015603 ACCTTGTACTTGTAGACCTTCACTAC 60.016 42.308 0.00 0.00 40.13 2.73
2893 3254 7.309867 CCTTGTACTTGTAGACCTTCACTACAT 60.310 40.741 0.00 0.00 45.86 2.29
2904 3265 2.099141 TCACTACATGCTGGCTGTTC 57.901 50.000 0.00 0.00 0.00 3.18
2907 3268 2.816087 CACTACATGCTGGCTGTTCTTT 59.184 45.455 0.00 0.00 0.00 2.52
2909 3270 4.455533 CACTACATGCTGGCTGTTCTTTTA 59.544 41.667 0.00 0.00 0.00 1.52
2911 3272 2.558359 ACATGCTGGCTGTTCTTTTACC 59.442 45.455 0.00 0.00 0.00 2.85
2912 3273 2.356665 TGCTGGCTGTTCTTTTACCA 57.643 45.000 0.00 0.00 0.00 3.25
2913 3274 2.875296 TGCTGGCTGTTCTTTTACCAT 58.125 42.857 0.00 0.00 0.00 3.55
2915 3276 4.402829 TGCTGGCTGTTCTTTTACCATAA 58.597 39.130 0.00 0.00 0.00 1.90
2916 3277 5.016173 TGCTGGCTGTTCTTTTACCATAAT 58.984 37.500 0.00 0.00 0.00 1.28
2917 3278 5.105797 TGCTGGCTGTTCTTTTACCATAATG 60.106 40.000 0.00 0.00 0.00 1.90
2918 3279 5.323371 TGGCTGTTCTTTTACCATAATGC 57.677 39.130 0.00 0.00 0.00 3.56
2919 3280 5.016173 TGGCTGTTCTTTTACCATAATGCT 58.984 37.500 0.00 0.00 0.00 3.79
2921 3282 5.343249 GCTGTTCTTTTACCATAATGCTGG 58.657 41.667 0.00 0.00 42.35 4.85
2923 3284 6.509418 TGTTCTTTTACCATAATGCTGGTC 57.491 37.500 0.00 0.00 46.79 4.02
2924 3285 6.007076 TGTTCTTTTACCATAATGCTGGTCA 58.993 36.000 0.00 0.00 46.79 4.02
2925 3286 6.663093 TGTTCTTTTACCATAATGCTGGTCAT 59.337 34.615 0.00 0.00 46.79 3.06
2926 3287 7.178274 TGTTCTTTTACCATAATGCTGGTCATT 59.822 33.333 0.00 0.00 46.79 2.57
2927 3288 7.099266 TCTTTTACCATAATGCTGGTCATTG 57.901 36.000 0.00 0.00 46.79 2.82
2972 3333 3.506810 CAAAAGTGCCGTTCTTGAACAA 58.493 40.909 13.05 0.00 0.00 2.83
2978 3339 4.759693 AGTGCCGTTCTTGAACAATTGATA 59.240 37.500 13.59 0.00 0.00 2.15
2993 3354 7.673641 ACAATTGATAGAGGAGAGTTCAGAT 57.326 36.000 13.59 0.00 0.00 2.90
2996 3357 7.911130 ATTGATAGAGGAGAGTTCAGATCAA 57.089 36.000 0.00 0.00 35.50 2.57
3019 3380 6.981762 AGAAGAGTGCATCATCAAACTAAG 57.018 37.500 0.00 0.00 0.00 2.18
3119 3480 1.795170 ATGTTGTCCACCTGCGTTGC 61.795 55.000 0.00 0.00 0.00 4.17
3188 3549 5.508489 CCTGATTGCACAGACAGAAATGTTT 60.508 40.000 5.92 0.00 39.94 2.83
3197 3558 7.479980 CACAGACAGAAATGTTTCTTAACCAA 58.520 34.615 5.30 0.00 44.70 3.67
3227 3588 6.932400 TGCTTCGTAACTGGAAAGATTCTTTA 59.068 34.615 11.55 0.00 0.00 1.85
3242 3603 3.495434 TCTTTAAAGGCCCTCGAAACA 57.505 42.857 15.13 0.00 0.00 2.83
3245 3606 2.871096 TAAAGGCCCTCGAAACATGT 57.129 45.000 0.00 0.00 0.00 3.21
3320 3681 4.256920 AGTCATTAGCATCGAAAGCAACT 58.743 39.130 14.53 7.39 0.00 3.16
3323 3684 4.570772 TCATTAGCATCGAAAGCAACTACC 59.429 41.667 14.53 0.00 0.00 3.18
3326 3687 1.060698 GCATCGAAAGCAACTACCGAC 59.939 52.381 8.19 0.00 31.85 4.79
3329 3690 0.320073 CGAAAGCAACTACCGACCCA 60.320 55.000 0.00 0.00 0.00 4.51
3380 3741 1.304713 CCTCATGCAAAGCCCTGGT 60.305 57.895 0.00 0.00 0.00 4.00
3437 3798 0.875059 GGCCCAGAAACTTCAGTTCG 59.125 55.000 0.00 0.00 37.25 3.95
3488 3849 4.651778 TGAGTTTTCCCATGTACAAGAGG 58.348 43.478 0.00 2.30 0.00 3.69
3508 3869 4.040755 AGGTTGCTATCTGGTATGGAGTT 58.959 43.478 0.00 0.00 0.00 3.01
3518 3879 2.277084 GGTATGGAGTTTCGACGCATT 58.723 47.619 0.00 0.00 0.00 3.56
3551 3912 2.418368 TCGCTGGTTCTTTGGCATAT 57.582 45.000 0.00 0.00 0.00 1.78
3758 4119 2.827642 GCCAGCTCCACCTGCATC 60.828 66.667 0.00 0.00 0.00 3.91
3980 4346 1.533625 TACCAATCACTGCTGTTGCC 58.466 50.000 0.00 0.00 38.71 4.52
3984 4350 1.338973 CAATCACTGCTGTTGCCAAGT 59.661 47.619 0.00 0.00 38.71 3.16
3989 4355 1.949525 ACTGCTGTTGCCAAGTTACTG 59.050 47.619 0.00 0.00 38.71 2.74
4049 4415 1.545841 AACCTCCGAAATTCCAAGCC 58.454 50.000 0.00 0.00 0.00 4.35
4091 4457 4.971125 GCCCGGCCGCTAGATGAC 62.971 72.222 22.85 0.00 0.00 3.06
4146 4575 7.945664 TGAAGGTAGATCTTCTATCCTACTTCC 59.054 40.741 0.00 0.00 42.54 3.46
4147 4576 7.657352 AGGTAGATCTTCTATCCTACTTCCT 57.343 40.000 0.00 0.00 30.39 3.36
4149 4578 8.516198 AGGTAGATCTTCTATCCTACTTCCTTT 58.484 37.037 0.00 0.00 30.39 3.11
4214 5347 2.141517 CATTCCTGGCTATCAGAAGCG 58.858 52.381 0.00 0.00 46.18 4.68
4679 5827 3.379445 GAGGGGTCGGTGAGCGAA 61.379 66.667 8.80 0.00 0.00 4.70
4795 5943 4.405036 CCAAACTCCCTACTAGTTACTCCC 59.595 50.000 0.00 0.00 36.17 4.30
4798 5946 4.040755 ACTCCCTACTAGTTACTCCCGTA 58.959 47.826 0.00 0.00 0.00 4.02
4841 5997 5.184479 TGAGCTGTGTTATAGTTTCCGTAGT 59.816 40.000 0.00 0.00 0.00 2.73
4845 6001 5.631026 TGTGTTATAGTTTCCGTAGTCGTC 58.369 41.667 0.00 0.00 35.01 4.20
4846 6002 4.725754 GTGTTATAGTTTCCGTAGTCGTCG 59.274 45.833 0.00 0.00 35.01 5.12
4847 6003 4.391830 TGTTATAGTTTCCGTAGTCGTCGT 59.608 41.667 0.00 0.00 35.01 4.34
4848 6004 5.106712 TGTTATAGTTTCCGTAGTCGTCGTT 60.107 40.000 0.00 0.00 35.01 3.85
4850 6006 3.896648 AGTTTCCGTAGTCGTCGTTTA 57.103 42.857 0.00 0.00 35.01 2.01
4859 6015 6.092944 TCCGTAGTCGTCGTTTATAGGTTTAA 59.907 38.462 0.00 0.00 35.01 1.52
5282 7443 7.767198 TCTTATAGGAAATGGTTCGAAAATCGT 59.233 33.333 0.00 0.00 41.35 3.73
5488 8080 4.141287 CCCCATAATGAAATCGCCAGTAA 58.859 43.478 0.00 0.00 0.00 2.24
5511 8103 3.096092 TGCAAGTGTTTTGAGTCCCTTT 58.904 40.909 0.00 0.00 0.00 3.11
5577 8172 6.223120 GGAATGGAAATGTGTAGCAAAGTTT 58.777 36.000 0.00 0.00 0.00 2.66
5578 8173 6.146021 GGAATGGAAATGTGTAGCAAAGTTTG 59.854 38.462 11.41 11.41 0.00 2.93
5579 8174 5.843673 TGGAAATGTGTAGCAAAGTTTGA 57.156 34.783 19.82 0.00 0.00 2.69
5580 8175 6.403866 TGGAAATGTGTAGCAAAGTTTGAT 57.596 33.333 19.82 15.74 0.00 2.57
5581 8176 6.215121 TGGAAATGTGTAGCAAAGTTTGATG 58.785 36.000 19.82 0.00 0.00 3.07
5582 8177 6.183360 TGGAAATGTGTAGCAAAGTTTGATGT 60.183 34.615 19.82 5.40 0.00 3.06
5612 8211 2.838736 ACTGAAGTAGTGCAAGTGGTG 58.161 47.619 0.00 0.00 38.49 4.17
5630 8229 2.611971 GGTGGTCAGTTCATAGTTGCGA 60.612 50.000 0.00 0.00 0.00 5.10
5632 8231 2.299013 TGGTCAGTTCATAGTTGCGAGT 59.701 45.455 0.00 0.00 0.00 4.18
5634 8233 4.021807 TGGTCAGTTCATAGTTGCGAGTAA 60.022 41.667 0.00 0.00 0.00 2.24
5636 8235 5.232414 GGTCAGTTCATAGTTGCGAGTAATC 59.768 44.000 0.00 0.00 0.00 1.75
5642 8241 9.378551 AGTTCATAGTTGCGAGTAATCAAATAA 57.621 29.630 0.00 0.00 0.00 1.40
5711 8310 9.136323 ACTTGTAGATCATTTTCTCTTTGGTTT 57.864 29.630 0.00 0.00 0.00 3.27
5786 8385 2.416547 CGACTGATGATTTGTGTGGACC 59.583 50.000 0.00 0.00 0.00 4.46
5800 8399 1.897802 GTGGACCGAGGAAGTTAAGGA 59.102 52.381 0.00 0.00 0.00 3.36
5808 8407 1.079503 GGAAGTTAAGGACGCTGCAG 58.920 55.000 10.11 10.11 0.00 4.41
5809 8408 1.079503 GAAGTTAAGGACGCTGCAGG 58.920 55.000 17.12 8.27 0.00 4.85
5810 8409 0.321653 AAGTTAAGGACGCTGCAGGG 60.322 55.000 27.57 27.57 0.00 4.45
5884 8483 0.614415 AGGCCAGAGTCTGACCAGAG 60.614 60.000 25.40 7.74 36.45 3.35
5919 8518 3.256631 GGTCAATGCAAAGAACCTGTGAT 59.743 43.478 0.00 0.00 0.00 3.06
5920 8519 4.232221 GTCAATGCAAAGAACCTGTGATG 58.768 43.478 0.00 0.00 0.00 3.07
5922 8521 1.985473 TGCAAAGAACCTGTGATGCT 58.015 45.000 0.00 0.00 34.97 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.514059 ACGTTTGTTTATGCATGCATTTC 57.486 34.783 36.23 24.81 37.82 2.17
3 4 5.677936 CAACGTTTGTTTATGCATGCATTT 58.322 33.333 36.23 18.58 35.72 2.32
5 6 3.123284 GCAACGTTTGTTTATGCATGCAT 59.877 39.130 33.92 33.92 35.72 3.96
6 7 2.474359 GCAACGTTTGTTTATGCATGCA 59.526 40.909 25.04 25.04 35.72 3.96
7 8 2.159854 GGCAACGTTTGTTTATGCATGC 60.160 45.455 11.82 11.82 35.72 4.06
8 9 2.411409 GGGCAACGTTTGTTTATGCATG 59.589 45.455 10.16 0.00 35.72 4.06
9 10 2.682836 GGGCAACGTTTGTTTATGCAT 58.317 42.857 3.79 3.79 35.72 3.96
10 11 1.600663 CGGGCAACGTTTGTTTATGCA 60.601 47.619 0.00 0.00 35.72 3.96
11 12 1.056869 CGGGCAACGTTTGTTTATGC 58.943 50.000 0.00 0.00 35.72 3.14
12 13 1.692296 CCGGGCAACGTTTGTTTATG 58.308 50.000 0.00 0.00 42.24 1.90
13 14 0.038983 GCCGGGCAACGTTTGTTTAT 60.039 50.000 15.62 0.00 42.24 1.40
14 15 1.102222 AGCCGGGCAACGTTTGTTTA 61.102 50.000 23.09 0.00 42.24 2.01
15 16 2.105328 GCCGGGCAACGTTTGTTT 59.895 55.556 15.62 0.00 42.24 2.83
16 17 2.831284 AGCCGGGCAACGTTTGTT 60.831 55.556 23.09 0.00 42.24 2.83
17 18 2.944409 TACAGCCGGGCAACGTTTGT 62.944 55.000 23.09 17.30 42.24 2.83
18 19 2.255172 TACAGCCGGGCAACGTTTG 61.255 57.895 23.09 11.96 42.24 2.93
19 20 2.111460 TACAGCCGGGCAACGTTT 59.889 55.556 23.09 0.00 42.24 3.60
20 21 2.667199 GTACAGCCGGGCAACGTT 60.667 61.111 23.09 0.00 42.24 3.99
21 22 3.584868 GAGTACAGCCGGGCAACGT 62.585 63.158 23.09 16.93 42.24 3.99
22 23 2.813908 GAGTACAGCCGGGCAACG 60.814 66.667 23.09 11.62 43.80 4.10
23 24 1.448013 GAGAGTACAGCCGGGCAAC 60.448 63.158 23.09 15.69 0.00 4.17
24 25 1.605058 GAGAGAGTACAGCCGGGCAA 61.605 60.000 23.09 2.88 0.00 4.52
25 26 2.037367 AGAGAGTACAGCCGGGCA 59.963 61.111 23.09 0.00 0.00 5.36
26 27 2.787567 GGAGAGAGTACAGCCGGGC 61.788 68.421 12.11 12.11 0.00 6.13
27 28 0.684805 AAGGAGAGAGTACAGCCGGG 60.685 60.000 2.18 0.00 0.00 5.73
28 29 0.741915 GAAGGAGAGAGTACAGCCGG 59.258 60.000 0.00 0.00 0.00 6.13
29 30 1.403679 CTGAAGGAGAGAGTACAGCCG 59.596 57.143 0.00 0.00 0.00 5.52
30 31 2.729194 TCTGAAGGAGAGAGTACAGCC 58.271 52.381 0.00 0.00 0.00 4.85
84 85 2.175499 TGATGAGGAGGGCATTAAAGGG 59.825 50.000 0.00 0.00 0.00 3.95
157 163 2.835895 GGGGGTTGTGCGTTGGTT 60.836 61.111 0.00 0.00 0.00 3.67
169 175 3.774336 TATGGGAGGAGCGGGGGT 61.774 66.667 0.00 0.00 0.00 4.95
214 220 9.778741 AGAAGGTGTTTCTTTTCTTTTTCTTTT 57.221 25.926 0.00 0.00 43.68 2.27
263 269 3.535280 AATGTGTTGGAAGGCGTTTTT 57.465 38.095 0.00 0.00 0.00 1.94
278 285 4.027621 CGCAAAGCTACGACTAGTAATGTG 60.028 45.833 0.00 0.00 34.45 3.21
280 287 4.348656 TCGCAAAGCTACGACTAGTAATG 58.651 43.478 0.00 0.00 34.45 1.90
288 295 3.280775 GCAAATATCGCAAAGCTACGAC 58.719 45.455 8.38 0.00 41.76 4.34
300 317 1.004610 CTGTGTGAGGCGCAAATATCG 60.005 52.381 10.83 0.00 37.13 2.92
336 378 9.878599 CGCAAATAGTGGGAAATAAATTAGTAG 57.121 33.333 0.00 0.00 42.76 2.57
337 379 8.347035 GCGCAAATAGTGGGAAATAAATTAGTA 58.653 33.333 0.30 0.00 42.76 1.82
338 380 7.200455 GCGCAAATAGTGGGAAATAAATTAGT 58.800 34.615 0.30 0.00 42.76 2.24
355 400 1.955778 CCATCCATTGAGGCGCAAATA 59.044 47.619 10.83 0.00 40.48 1.40
360 405 1.453745 TTCCCATCCATTGAGGCGC 60.454 57.895 0.00 0.00 37.29 6.53
364 409 1.396653 GCTGGTTCCCATCCATTGAG 58.603 55.000 0.00 0.00 34.26 3.02
365 410 0.033208 GGCTGGTTCCCATCCATTGA 60.033 55.000 0.00 0.00 39.41 2.57
370 415 2.438434 CACGGCTGGTTCCCATCC 60.438 66.667 0.00 0.00 36.54 3.51
405 450 6.494666 TTATTTGGTCGACAAGGGAGATAT 57.505 37.500 18.91 1.88 40.82 1.63
414 464 6.432783 AGGTCAATCAATTATTTGGTCGACAA 59.567 34.615 18.91 2.10 37.28 3.18
438 488 2.031516 CCAGACGACAAGGCAGCAG 61.032 63.158 0.00 0.00 0.00 4.24
439 489 2.031012 CCAGACGACAAGGCAGCA 59.969 61.111 0.00 0.00 0.00 4.41
460 551 1.601419 TAGGCGTCAAACGGAGGGAG 61.601 60.000 1.33 0.00 42.82 4.30
464 555 1.468736 GGTAGTAGGCGTCAAACGGAG 60.469 57.143 1.33 0.00 42.82 4.63
467 558 2.068837 TTGGTAGTAGGCGTCAAACG 57.931 50.000 0.00 0.00 45.88 3.60
469 560 3.998341 GTCAATTGGTAGTAGGCGTCAAA 59.002 43.478 5.42 0.00 0.00 2.69
470 561 3.592059 GTCAATTGGTAGTAGGCGTCAA 58.408 45.455 5.42 0.00 0.00 3.18
471 562 2.093869 GGTCAATTGGTAGTAGGCGTCA 60.094 50.000 5.42 0.00 0.00 4.35
472 563 2.547826 GGTCAATTGGTAGTAGGCGTC 58.452 52.381 5.42 0.00 0.00 5.19
473 564 1.208776 GGGTCAATTGGTAGTAGGCGT 59.791 52.381 5.42 0.00 0.00 5.68
474 565 1.805120 CGGGTCAATTGGTAGTAGGCG 60.805 57.143 5.42 0.00 0.00 5.52
475 566 1.483415 TCGGGTCAATTGGTAGTAGGC 59.517 52.381 5.42 0.00 0.00 3.93
476 567 4.377897 GAATCGGGTCAATTGGTAGTAGG 58.622 47.826 5.42 0.00 0.00 3.18
504 595 8.542953 GTTTTGTTGCAAGGAGAAAGAAATTAG 58.457 33.333 0.00 0.00 0.00 1.73
505 596 8.037758 TGTTTTGTTGCAAGGAGAAAGAAATTA 58.962 29.630 0.00 0.00 0.00 1.40
506 597 6.878389 TGTTTTGTTGCAAGGAGAAAGAAATT 59.122 30.769 0.00 0.00 0.00 1.82
507 598 6.405538 TGTTTTGTTGCAAGGAGAAAGAAAT 58.594 32.000 0.00 0.00 0.00 2.17
508 599 5.788450 TGTTTTGTTGCAAGGAGAAAGAAA 58.212 33.333 0.00 0.00 0.00 2.52
509 600 5.398603 TGTTTTGTTGCAAGGAGAAAGAA 57.601 34.783 0.00 0.00 0.00 2.52
527 618 4.328712 GCCAACTCGACAATTGTTTTGTTT 59.671 37.500 13.36 0.40 31.96 2.83
528 619 3.862845 GCCAACTCGACAATTGTTTTGTT 59.137 39.130 13.36 13.87 31.96 2.83
530 621 3.443037 TGCCAACTCGACAATTGTTTTG 58.557 40.909 13.36 12.90 0.00 2.44
533 624 3.317711 TCATTGCCAACTCGACAATTGTT 59.682 39.130 13.36 0.00 31.82 2.83
535 626 3.557577 TCATTGCCAACTCGACAATTG 57.442 42.857 3.24 3.24 31.82 2.32
536 627 3.305335 GGTTCATTGCCAACTCGACAATT 60.305 43.478 0.00 0.00 31.82 2.32
537 628 2.228822 GGTTCATTGCCAACTCGACAAT 59.771 45.455 0.00 0.00 34.42 2.71
538 629 1.606668 GGTTCATTGCCAACTCGACAA 59.393 47.619 0.00 0.00 0.00 3.18
557 648 1.270625 TGACTGGGTGTAAAAGAGCGG 60.271 52.381 0.00 0.00 0.00 5.52
558 649 2.163818 TGACTGGGTGTAAAAGAGCG 57.836 50.000 0.00 0.00 0.00 5.03
563 684 1.529226 CGCCATGACTGGGTGTAAAA 58.471 50.000 0.00 0.00 43.36 1.52
609 730 4.762809 CGCTGTGTGTTTTTCTCTACTTC 58.237 43.478 0.00 0.00 0.00 3.01
612 733 2.349532 GGCGCTGTGTGTTTTTCTCTAC 60.350 50.000 7.64 0.00 0.00 2.59
615 736 0.380378 TGGCGCTGTGTGTTTTTCTC 59.620 50.000 7.64 0.00 0.00 2.87
618 739 0.530288 AGTTGGCGCTGTGTGTTTTT 59.470 45.000 7.64 0.00 0.00 1.94
620 741 1.433064 CAGTTGGCGCTGTGTGTTT 59.567 52.632 7.64 0.00 0.00 2.83
621 742 3.110139 CAGTTGGCGCTGTGTGTT 58.890 55.556 7.64 0.00 0.00 3.32
658 800 1.314867 GGGGAGGTGGAGATGGAGA 59.685 63.158 0.00 0.00 0.00 3.71
675 817 0.182775 CGGGGAGTTTGATTAGGGGG 59.817 60.000 0.00 0.00 0.00 5.40
676 818 1.141053 CTCGGGGAGTTTGATTAGGGG 59.859 57.143 0.00 0.00 0.00 4.79
776 935 3.732849 GTTGGGGCAGGGAGGAGG 61.733 72.222 0.00 0.00 0.00 4.30
777 936 3.732849 GGTTGGGGCAGGGAGGAG 61.733 72.222 0.00 0.00 0.00 3.69
780 939 3.589542 TTGGGTTGGGGCAGGGAG 61.590 66.667 0.00 0.00 0.00 4.30
781 940 3.909651 GTTGGGTTGGGGCAGGGA 61.910 66.667 0.00 0.00 0.00 4.20
782 941 2.543797 TAGTTGGGTTGGGGCAGGG 61.544 63.158 0.00 0.00 0.00 4.45
786 991 1.376812 CGAGTAGTTGGGTTGGGGC 60.377 63.158 0.00 0.00 0.00 5.80
806 1011 0.411452 TTGGGAGAGAGAGCAGGAGT 59.589 55.000 0.00 0.00 0.00 3.85
807 1012 0.823460 GTTGGGAGAGAGAGCAGGAG 59.177 60.000 0.00 0.00 0.00 3.69
808 1013 0.616111 GGTTGGGAGAGAGAGCAGGA 60.616 60.000 0.00 0.00 0.00 3.86
809 1014 1.621672 GGGTTGGGAGAGAGAGCAGG 61.622 65.000 0.00 0.00 0.00 4.85
810 1015 1.621672 GGGGTTGGGAGAGAGAGCAG 61.622 65.000 0.00 0.00 0.00 4.24
811 1016 1.613630 GGGGTTGGGAGAGAGAGCA 60.614 63.158 0.00 0.00 0.00 4.26
812 1017 2.371259 GGGGGTTGGGAGAGAGAGC 61.371 68.421 0.00 0.00 0.00 4.09
813 1018 0.327000 ATGGGGGTTGGGAGAGAGAG 60.327 60.000 0.00 0.00 0.00 3.20
814 1019 0.121197 AATGGGGGTTGGGAGAGAGA 59.879 55.000 0.00 0.00 0.00 3.10
815 1020 0.257039 CAATGGGGGTTGGGAGAGAG 59.743 60.000 0.00 0.00 0.00 3.20
816 1021 0.477597 ACAATGGGGGTTGGGAGAGA 60.478 55.000 0.00 0.00 33.40 3.10
863 1095 2.611225 AGAGGAGCACCGATTCAATC 57.389 50.000 0.00 0.00 41.83 2.67
871 1103 2.125350 GCAGGAAGAGGAGCACCG 60.125 66.667 0.00 0.00 41.83 4.94
901 1133 2.017049 CCTCCTCCAATAAACCAAGCG 58.983 52.381 0.00 0.00 0.00 4.68
902 1134 3.282885 CTCCTCCTCCAATAAACCAAGC 58.717 50.000 0.00 0.00 0.00 4.01
903 1135 4.265073 CACTCCTCCTCCAATAAACCAAG 58.735 47.826 0.00 0.00 0.00 3.61
904 1136 3.010138 CCACTCCTCCTCCAATAAACCAA 59.990 47.826 0.00 0.00 0.00 3.67
905 1137 2.576191 CCACTCCTCCTCCAATAAACCA 59.424 50.000 0.00 0.00 0.00 3.67
906 1138 2.576648 ACCACTCCTCCTCCAATAAACC 59.423 50.000 0.00 0.00 0.00 3.27
955 1189 2.603652 GGTTGGAGGTGGAGACCCC 61.604 68.421 0.00 0.00 44.40 4.95
965 1199 3.935203 GCGATACATGATATGGTTGGAGG 59.065 47.826 0.00 0.00 33.60 4.30
977 1211 0.104855 GCAGGGTCAGCGATACATGA 59.895 55.000 0.00 0.00 0.00 3.07
1041 1299 0.621082 TTCTCTCTCGCTCTCTCCCA 59.379 55.000 0.00 0.00 0.00 4.37
1090 1348 2.046892 CCCTCAACCAGCACTCGG 60.047 66.667 0.00 0.00 0.00 4.63
1097 1355 3.406764 CAGAAGAAGAACCCTCAACCAG 58.593 50.000 0.00 0.00 0.00 4.00
1104 1373 1.003233 GGCGCAGAAGAAGAACCCT 60.003 57.895 10.83 0.00 0.00 4.34
1107 1376 1.355066 CTCGGGCGCAGAAGAAGAAC 61.355 60.000 10.83 0.00 0.00 3.01
1129 1398 0.320421 AAAGAAGGCTGCGCGAGTAA 60.320 50.000 12.10 0.00 0.00 2.24
1203 1481 1.101331 CAGGCTTTGATCCCAGCTTC 58.899 55.000 11.84 0.00 36.20 3.86
1261 1539 3.491792 GGGAAGAAGAGAGTAATGAGGCG 60.492 52.174 0.00 0.00 0.00 5.52
1294 1573 2.351726 GCTGAATTAACGCGGAGAACAT 59.648 45.455 12.47 0.00 0.00 2.71
1301 1580 1.083489 TCAAGGCTGAATTAACGCGG 58.917 50.000 12.47 0.00 0.00 6.46
1312 1594 0.449388 GACCGCAGAAATCAAGGCTG 59.551 55.000 0.00 0.00 0.00 4.85
1316 1598 3.181516 GCAAGTAGACCGCAGAAATCAAG 60.182 47.826 0.00 0.00 0.00 3.02
1331 1618 0.820871 AAGGGAGAGCGAGCAAGTAG 59.179 55.000 0.00 0.00 0.00 2.57
1332 1619 0.532573 CAAGGGAGAGCGAGCAAGTA 59.467 55.000 0.00 0.00 0.00 2.24
1335 1626 2.046892 GCAAGGGAGAGCGAGCAA 60.047 61.111 0.00 0.00 0.00 3.91
1354 1645 2.582636 ACAAGGCCCAATTGTCTATCCT 59.417 45.455 0.00 0.55 36.10 3.24
1362 1653 2.102925 ACAAGACAACAAGGCCCAATTG 59.897 45.455 0.00 3.75 0.00 2.32
1364 1655 2.086610 ACAAGACAACAAGGCCCAAT 57.913 45.000 0.00 0.00 0.00 3.16
1365 1656 1.754226 GAACAAGACAACAAGGCCCAA 59.246 47.619 0.00 0.00 0.00 4.12
1366 1657 1.398692 GAACAAGACAACAAGGCCCA 58.601 50.000 0.00 0.00 0.00 5.36
1367 1658 0.673985 GGAACAAGACAACAAGGCCC 59.326 55.000 0.00 0.00 0.00 5.80
1368 1659 1.338020 CAGGAACAAGACAACAAGGCC 59.662 52.381 0.00 0.00 0.00 5.19
1370 1661 1.338020 GGCAGGAACAAGACAACAAGG 59.662 52.381 0.00 0.00 0.00 3.61
1371 1662 1.338020 GGGCAGGAACAAGACAACAAG 59.662 52.381 0.00 0.00 0.00 3.16
1372 1663 1.064017 AGGGCAGGAACAAGACAACAA 60.064 47.619 0.00 0.00 0.00 2.83
1406 1699 4.706962 CCCCTAAATTCTTGAGGTTTCAGG 59.293 45.833 0.00 0.00 34.15 3.86
1416 1709 7.834181 TGTCCTATTTTCTCCCCTAAATTCTTG 59.166 37.037 0.00 0.00 0.00 3.02
1435 1733 1.958288 ACCAGCCACTCTTGTCCTAT 58.042 50.000 0.00 0.00 0.00 2.57
1448 1746 2.644992 CAAGAACGCCAACCAGCC 59.355 61.111 0.00 0.00 0.00 4.85
1450 1748 2.268076 CCCCAAGAACGCCAACCAG 61.268 63.158 0.00 0.00 0.00 4.00
1465 1763 1.276138 CCAATTTGAGCAGAAACCCCC 59.724 52.381 0.00 0.00 0.00 5.40
1489 1787 2.486982 CAGACAGAGCTCCACCAAATTG 59.513 50.000 10.93 1.61 0.00 2.32
1567 1869 2.111162 CTCAGGGAGAGCGGTGTAG 58.889 63.158 0.00 0.00 37.59 2.74
1606 1908 6.464222 GCAGTGGCCTGTATATATACAAAGA 58.536 40.000 22.67 7.85 42.20 2.52
1607 1909 6.727824 GCAGTGGCCTGTATATATACAAAG 57.272 41.667 22.67 18.10 42.20 2.77
1629 1931 2.161855 TGTGAACATGGAATCAGTGGC 58.838 47.619 0.00 0.00 0.00 5.01
1641 1943 6.183360 GCAATTGAAAATACGCATGTGAACAT 60.183 34.615 14.43 0.13 36.96 2.71
1642 1944 5.118357 GCAATTGAAAATACGCATGTGAACA 59.882 36.000 14.43 0.00 0.00 3.18
1643 1945 5.118357 TGCAATTGAAAATACGCATGTGAAC 59.882 36.000 14.43 0.00 0.00 3.18
1644 1946 5.225642 TGCAATTGAAAATACGCATGTGAA 58.774 33.333 14.43 0.00 0.00 3.18
1645 1947 4.802999 TGCAATTGAAAATACGCATGTGA 58.197 34.783 14.43 0.00 0.00 3.58
1646 1948 5.512573 TTGCAATTGAAAATACGCATGTG 57.487 34.783 10.34 4.30 0.00 3.21
1647 1949 6.361899 GTTTTGCAATTGAAAATACGCATGT 58.638 32.000 12.46 0.00 0.00 3.21
1648 1950 5.500637 CGTTTTGCAATTGAAAATACGCATG 59.499 36.000 22.23 8.62 0.00 4.06
1649 1951 5.403766 TCGTTTTGCAATTGAAAATACGCAT 59.596 32.000 25.64 0.00 32.40 4.73
1650 1952 4.740205 TCGTTTTGCAATTGAAAATACGCA 59.260 33.333 25.64 17.91 32.40 5.24
1651 1953 5.244025 TCGTTTTGCAATTGAAAATACGC 57.756 34.783 25.64 13.25 32.40 4.42
1652 1954 7.032168 TCATCGTTTTGCAATTGAAAATACG 57.968 32.000 25.07 25.07 33.00 3.06
1653 1955 8.226543 TCTCATCGTTTTGCAATTGAAAATAC 57.773 30.769 12.46 11.76 0.00 1.89
1676 1978 4.744795 ACCAAGTCTGCTATTCGAATCT 57.255 40.909 15.25 1.10 0.00 2.40
1683 1985 5.316987 AGCAAGTAAACCAAGTCTGCTATT 58.683 37.500 0.00 0.00 0.00 1.73
1684 1986 4.911390 AGCAAGTAAACCAAGTCTGCTAT 58.089 39.130 0.00 0.00 0.00 2.97
1692 1994 2.508526 AGCAGGAGCAAGTAAACCAAG 58.491 47.619 0.00 0.00 45.49 3.61
1710 2012 4.300803 TCAATCACAAATGACAAGCAAGC 58.699 39.130 0.00 0.00 37.79 4.01
1723 2025 6.432162 CCCTGAATTTTCTCTCTCAATCACAA 59.568 38.462 0.00 0.00 0.00 3.33
1724 2026 5.942236 CCCTGAATTTTCTCTCTCAATCACA 59.058 40.000 0.00 0.00 0.00 3.58
1735 2041 8.978539 GTAATGTTTTCAACCCTGAATTTTCTC 58.021 33.333 0.00 0.00 41.22 2.87
1761 2067 5.039333 GGCAACTAGCATAGCATTTGAAAG 58.961 41.667 0.00 0.00 44.39 2.62
1787 2095 4.328712 ACGCCTTGTTTTGAACACATTTTC 59.671 37.500 0.00 0.00 41.97 2.29
1792 2100 3.732471 GCTAACGCCTTGTTTTGAACACA 60.732 43.478 0.00 0.00 41.97 3.72
1793 2101 2.787129 GCTAACGCCTTGTTTTGAACAC 59.213 45.455 0.00 0.00 41.97 3.32
1798 2110 1.606668 TCCAGCTAACGCCTTGTTTTG 59.393 47.619 0.00 0.00 42.09 2.44
1803 2115 2.487762 TCAAATTCCAGCTAACGCCTTG 59.512 45.455 0.00 0.00 36.60 3.61
1811 2123 7.708752 ACAAAACGAAATTTCAAATTCCAGCTA 59.291 29.630 17.99 0.00 0.00 3.32
1815 2127 7.201565 GGTGACAAAACGAAATTTCAAATTCCA 60.202 33.333 17.99 4.83 0.00 3.53
1838 2150 4.509970 TCTTAATCAACAAGTGTGTCGGTG 59.490 41.667 0.00 0.00 36.80 4.94
1865 2180 5.012768 AGTCTTCTCCTTATTTCGTGGGAAA 59.987 40.000 0.00 0.00 45.60 3.13
1869 2184 4.093556 GCAAGTCTTCTCCTTATTTCGTGG 59.906 45.833 0.00 0.00 0.00 4.94
1878 2193 3.600388 CAATACCGCAAGTCTTCTCCTT 58.400 45.455 0.00 0.00 0.00 3.36
1882 2197 1.279271 AGGCAATACCGCAAGTCTTCT 59.721 47.619 0.00 0.00 46.52 2.85
1971 2291 5.822519 ACTGTGCATATTAGTGGGTACAATG 59.177 40.000 0.00 0.00 0.00 2.82
1983 2316 4.441792 ACTGCGATCAACTGTGCATATTA 58.558 39.130 0.00 0.00 36.64 0.98
2053 2386 4.220382 TGTGATGTGGATCCATGAAAAACC 59.780 41.667 19.62 2.45 0.00 3.27
2107 2445 7.707893 GGCTGCATTGTCTTGTATAAATGAAAT 59.292 33.333 0.50 0.00 32.86 2.17
2108 2446 7.035004 GGCTGCATTGTCTTGTATAAATGAAA 58.965 34.615 0.50 0.00 32.86 2.69
2109 2447 6.152492 TGGCTGCATTGTCTTGTATAAATGAA 59.848 34.615 0.50 0.00 32.86 2.57
2110 2448 5.651576 TGGCTGCATTGTCTTGTATAAATGA 59.348 36.000 0.50 0.00 32.86 2.57
2111 2449 5.893687 TGGCTGCATTGTCTTGTATAAATG 58.106 37.500 0.50 0.00 33.98 2.32
2119 2457 2.223876 ACAAGTTGGCTGCATTGTCTTG 60.224 45.455 7.96 10.54 37.43 3.02
2121 2459 1.696063 ACAAGTTGGCTGCATTGTCT 58.304 45.000 7.96 0.00 30.25 3.41
2125 2463 8.531146 AGTAAATAATTACAAGTTGGCTGCATT 58.469 29.630 7.96 0.00 43.20 3.56
2131 2469 8.741603 TCCCTAGTAAATAATTACAAGTTGGC 57.258 34.615 7.96 0.00 43.20 4.52
2137 2475 8.097791 ACCTGCTCCCTAGTAAATAATTACAA 57.902 34.615 3.60 0.00 43.20 2.41
2150 2488 3.372440 AAATCCAAACCTGCTCCCTAG 57.628 47.619 0.00 0.00 0.00 3.02
2198 2536 6.029346 AGGTGGTTGATTTCATGAAACATC 57.971 37.500 22.71 17.12 32.51 3.06
2240 2578 0.533951 GGTAATGGTCCCTTCGACGT 59.466 55.000 0.00 0.00 42.99 4.34
2242 2580 0.533951 ACGGTAATGGTCCCTTCGAC 59.466 55.000 0.00 0.00 41.15 4.20
2245 2588 0.906775 TCCACGGTAATGGTCCCTTC 59.093 55.000 0.00 0.00 40.95 3.46
2325 2671 7.201470 GGTTCAAAAGCAGAAGAAAAAGTCAAG 60.201 37.037 0.00 0.00 0.00 3.02
2331 2677 6.935167 AGAAGGTTCAAAAGCAGAAGAAAAA 58.065 32.000 0.00 0.00 0.00 1.94
2379 2726 4.821805 CCAACTTCCACAGTAACATCACTT 59.178 41.667 0.00 0.00 32.94 3.16
2397 2744 2.041216 GTGGAAAGACATACCCCCAACT 59.959 50.000 0.00 0.00 0.00 3.16
2405 2752 6.927294 CCTTATGAAGGTGGAAAGACATAC 57.073 41.667 0.00 0.00 43.95 2.39
2446 2793 3.849708 GGCGAAATTGTTTACGGACAATC 59.150 43.478 12.43 4.27 46.53 2.67
2448 2795 2.030981 GGGCGAAATTGTTTACGGACAA 60.031 45.455 4.19 4.19 43.08 3.18
2453 2800 4.260620 CCATAGAGGGCGAAATTGTTTACG 60.261 45.833 0.00 0.00 0.00 3.18
2501 2848 9.650714 TCTAGGGCATTCTAGTAACAAGTAATA 57.349 33.333 7.53 0.00 38.25 0.98
2502 2849 8.548880 TCTAGGGCATTCTAGTAACAAGTAAT 57.451 34.615 7.53 0.00 38.25 1.89
2503 2850 7.966339 TCTAGGGCATTCTAGTAACAAGTAA 57.034 36.000 7.53 0.00 38.25 2.24
2504 2851 7.837689 TCTTCTAGGGCATTCTAGTAACAAGTA 59.162 37.037 7.53 0.00 38.25 2.24
2505 2852 6.668283 TCTTCTAGGGCATTCTAGTAACAAGT 59.332 38.462 7.53 0.00 38.25 3.16
2506 2853 7.113658 TCTTCTAGGGCATTCTAGTAACAAG 57.886 40.000 7.53 5.13 38.25 3.16
2570 2923 7.504924 TTGTTAGTCCACCTTGATGTTTTAG 57.495 36.000 0.00 0.00 0.00 1.85
2571 2924 7.558444 AGTTTGTTAGTCCACCTTGATGTTTTA 59.442 33.333 0.00 0.00 0.00 1.52
2575 2928 5.048846 AGTTTGTTAGTCCACCTTGATGT 57.951 39.130 0.00 0.00 0.00 3.06
2615 2968 7.975616 TGTTACGACAGACTAAAGTTTGTTAGT 59.024 33.333 7.62 12.10 45.03 2.24
2616 2969 8.343974 TGTTACGACAGACTAAAGTTTGTTAG 57.656 34.615 7.62 7.80 42.45 2.34
2617 2970 8.700722 TTGTTACGACAGACTAAAGTTTGTTA 57.299 30.769 7.62 0.00 42.45 2.41
2618 2971 7.599630 TTGTTACGACAGACTAAAGTTTGTT 57.400 32.000 7.62 0.00 42.45 2.83
2619 2972 6.238022 GCTTGTTACGACAGACTAAAGTTTGT 60.238 38.462 6.03 6.03 44.63 2.83
2620 2973 6.127403 GCTTGTTACGACAGACTAAAGTTTG 58.873 40.000 0.00 0.00 37.04 2.93
2621 2974 5.813672 TGCTTGTTACGACAGACTAAAGTTT 59.186 36.000 0.00 0.00 37.04 2.66
2622 2975 5.353938 TGCTTGTTACGACAGACTAAAGTT 58.646 37.500 0.00 0.00 37.04 2.66
2623 2976 4.940463 TGCTTGTTACGACAGACTAAAGT 58.060 39.130 0.00 0.00 37.04 2.66
2624 2977 5.900339 TTGCTTGTTACGACAGACTAAAG 57.100 39.130 0.00 0.00 37.04 1.85
2625 2978 5.581479 TGTTTGCTTGTTACGACAGACTAAA 59.419 36.000 0.00 0.00 37.04 1.85
2633 2986 3.545426 GGACACTGTTTGCTTGTTACGAC 60.545 47.826 0.00 0.00 0.00 4.34
2638 2991 3.701040 AGAATGGACACTGTTTGCTTGTT 59.299 39.130 0.00 0.00 0.00 2.83
2642 2995 4.718961 ACTTAGAATGGACACTGTTTGCT 58.281 39.130 0.00 0.00 0.00 3.91
2650 3003 3.191371 CCTTGCCAACTTAGAATGGACAC 59.809 47.826 11.69 0.00 39.12 3.67
2655 3008 5.123979 GGTAGTTCCTTGCCAACTTAGAATG 59.876 44.000 0.00 0.00 35.63 2.67
2659 3012 4.003648 CAGGTAGTTCCTTGCCAACTTAG 58.996 47.826 0.00 0.00 45.67 2.18
2665 3018 0.400213 CCACAGGTAGTTCCTTGCCA 59.600 55.000 0.00 0.00 45.67 4.92
2666 3019 0.690762 TCCACAGGTAGTTCCTTGCC 59.309 55.000 0.00 0.00 45.67 4.52
2709 3062 8.273780 ACAAGTTGCTCATCCTTCTTAATAAG 57.726 34.615 1.81 0.00 0.00 1.73
2724 3077 6.348540 CCTTCCAATACAAGTACAAGTTGCTC 60.349 42.308 1.81 0.00 31.85 4.26
2732 3085 7.458397 AGTGAAATCCTTCCAATACAAGTACA 58.542 34.615 0.00 0.00 0.00 2.90
2735 3088 6.542821 TGAGTGAAATCCTTCCAATACAAGT 58.457 36.000 0.00 0.00 0.00 3.16
2736 3089 7.636150 ATGAGTGAAATCCTTCCAATACAAG 57.364 36.000 0.00 0.00 0.00 3.16
2741 3094 7.016465 TCCAAAAATGAGTGAAATCCTTCCAAT 59.984 33.333 0.00 0.00 0.00 3.16
2745 3098 7.219484 TCTCCAAAAATGAGTGAAATCCTTC 57.781 36.000 0.00 0.00 0.00 3.46
2748 3101 9.927668 TTAATTCTCCAAAAATGAGTGAAATCC 57.072 29.630 0.00 0.00 0.00 3.01
2802 3163 9.632807 GAAAGTAAACAAATGGCATGTGTATTA 57.367 29.630 23.04 18.35 0.00 0.98
2806 3167 6.160576 AGAAAGTAAACAAATGGCATGTGT 57.839 33.333 17.61 17.61 0.00 3.72
2813 3174 5.301805 ACCACAGGAGAAAGTAAACAAATGG 59.698 40.000 0.00 0.00 0.00 3.16
2818 3179 4.764050 TGACCACAGGAGAAAGTAAACA 57.236 40.909 0.00 0.00 0.00 2.83
2819 3180 5.763204 TGAATGACCACAGGAGAAAGTAAAC 59.237 40.000 0.00 0.00 0.00 2.01
2821 3182 5.560722 TGAATGACCACAGGAGAAAGTAA 57.439 39.130 0.00 0.00 0.00 2.24
2822 3183 5.491070 CATGAATGACCACAGGAGAAAGTA 58.509 41.667 0.00 0.00 0.00 2.24
2832 3193 5.008980 TGTAAAGATGCATGAATGACCACA 58.991 37.500 2.46 0.00 0.00 4.17
2879 3240 1.065854 GCCAGCATGTAGTGAAGGTCT 60.066 52.381 0.00 0.00 0.00 3.85
2891 3252 2.557924 TGGTAAAAGAACAGCCAGCATG 59.442 45.455 0.00 0.00 0.00 4.06
2893 3254 2.356665 TGGTAAAAGAACAGCCAGCA 57.643 45.000 0.00 0.00 0.00 4.41
2911 3272 4.802039 GCAAAGACAATGACCAGCATTATG 59.198 41.667 0.00 0.00 45.23 1.90
2912 3273 4.463539 TGCAAAGACAATGACCAGCATTAT 59.536 37.500 0.00 0.00 45.23 1.28
2913 3274 3.825585 TGCAAAGACAATGACCAGCATTA 59.174 39.130 0.00 0.00 45.23 1.90
2915 3276 2.230508 CTGCAAAGACAATGACCAGCAT 59.769 45.455 0.00 0.00 39.43 3.79
2916 3277 1.610038 CTGCAAAGACAATGACCAGCA 59.390 47.619 0.00 0.00 0.00 4.41
2917 3278 1.610522 ACTGCAAAGACAATGACCAGC 59.389 47.619 0.00 0.00 0.00 4.85
2918 3279 3.304928 GGAACTGCAAAGACAATGACCAG 60.305 47.826 0.00 0.00 0.00 4.00
2919 3280 2.622942 GGAACTGCAAAGACAATGACCA 59.377 45.455 0.00 0.00 0.00 4.02
2921 3282 2.887152 AGGGAACTGCAAAGACAATGAC 59.113 45.455 0.00 0.00 41.13 3.06
2923 3284 4.326504 AAAGGGAACTGCAAAGACAATG 57.673 40.909 0.00 0.00 42.68 2.82
2924 3285 5.140454 AGTAAAGGGAACTGCAAAGACAAT 58.860 37.500 0.00 0.00 42.68 2.71
2925 3286 4.532834 AGTAAAGGGAACTGCAAAGACAA 58.467 39.130 0.00 0.00 42.68 3.18
2926 3287 4.164843 AGTAAAGGGAACTGCAAAGACA 57.835 40.909 0.00 0.00 42.68 3.41
2927 3288 5.507482 GGAAAGTAAAGGGAACTGCAAAGAC 60.507 44.000 0.00 0.00 42.68 3.01
2972 3333 7.784073 TCTTGATCTGAACTCTCCTCTATCAAT 59.216 37.037 0.00 0.00 33.17 2.57
2978 3339 5.579047 TCTTCTTGATCTGAACTCTCCTCT 58.421 41.667 0.00 0.00 0.00 3.69
2993 3354 5.311265 AGTTTGATGATGCACTCTTCTTGA 58.689 37.500 0.00 0.00 0.00 3.02
2996 3357 6.370994 CACTTAGTTTGATGATGCACTCTTCT 59.629 38.462 0.00 0.00 0.00 2.85
3050 3411 2.226962 AGCAGAATCTTGCCACCATT 57.773 45.000 2.03 0.00 45.18 3.16
3119 3480 1.067749 CTGGAGATGCTCAGAGGCG 59.932 63.158 0.00 0.00 34.52 5.52
3197 3558 1.045407 TCCAGTTACGAAGCACCACT 58.955 50.000 0.00 0.00 0.00 4.00
3227 3588 1.202879 TCACATGTTTCGAGGGCCTTT 60.203 47.619 7.89 0.00 0.00 3.11
3242 3603 2.837947 TGAGGGAGAAGGTCATCACAT 58.162 47.619 0.00 0.00 0.00 3.21
3245 3606 1.487976 GCATGAGGGAGAAGGTCATCA 59.512 52.381 0.00 0.00 0.00 3.07
3320 3681 1.970092 CAAACAGGTTTGGGTCGGTA 58.030 50.000 15.37 0.00 44.47 4.02
3329 3690 2.498056 CGGCCAGCCAAACAGGTTT 61.498 57.895 9.78 0.00 40.61 3.27
3389 3750 2.412605 GCTGATCCCATTCCACAGC 58.587 57.895 0.00 0.00 44.88 4.40
3437 3798 1.480954 ACATCGTCATACCACCAGTCC 59.519 52.381 0.00 0.00 0.00 3.85
3488 3849 4.508124 CGAAACTCCATACCAGATAGCAAC 59.492 45.833 0.00 0.00 0.00 4.17
3518 3879 1.829970 AGCGATGATCTCAGGCCGA 60.830 57.895 0.00 0.00 31.92 5.54
3551 3912 4.242475 CTGGAATATACTTCCGCGCATAA 58.758 43.478 8.75 0.00 41.43 1.90
3569 3930 0.114364 TGTGCCTACTGAGTCCTGGA 59.886 55.000 0.00 0.00 0.00 3.86
3614 3975 5.950883 TGTTCTACATCAGAAAGAGTACCG 58.049 41.667 0.00 0.00 44.89 4.02
3758 4119 1.082104 GCGTTTCTCCAAGTTGGCG 60.082 57.895 17.68 14.86 37.47 5.69
3980 4346 4.274459 GCAAGATAGCCATCCAGTAACTTG 59.726 45.833 0.00 0.00 36.39 3.16
3984 4350 3.711190 TCTGCAAGATAGCCATCCAGTAA 59.289 43.478 0.00 0.00 38.67 2.24
3989 4355 1.419387 ACCTCTGCAAGATAGCCATCC 59.581 52.381 0.00 0.00 45.62 3.51
4082 4448 0.599060 GGTAGAGGCCGTCATCTAGC 59.401 60.000 11.77 11.77 38.80 3.42
4158 4587 7.965107 GCAACACAAAACCAAAATGATTAACAA 59.035 29.630 0.00 0.00 0.00 2.83
4160 4589 7.693020 AGCAACACAAAACCAAAATGATTAAC 58.307 30.769 0.00 0.00 0.00 2.01
4161 4590 7.550551 TGAGCAACACAAAACCAAAATGATTAA 59.449 29.630 0.00 0.00 0.00 1.40
4163 4592 5.879223 TGAGCAACACAAAACCAAAATGATT 59.121 32.000 0.00 0.00 0.00 2.57
4214 5347 1.889573 GCATAGCTGCTCCCGTTCC 60.890 63.158 4.91 0.00 45.32 3.62
4313 5446 1.063806 CGAAGAAGAGGACTTGCACG 58.936 55.000 0.00 0.00 36.39 5.34
4319 5452 0.530288 GCTGCTCGAAGAAGAGGACT 59.470 55.000 0.00 0.00 38.63 3.85
4577 5710 1.535444 TCCTCCTCCGTTCTTGCCA 60.535 57.895 0.00 0.00 0.00 4.92
4581 5714 0.905337 CACCCTCCTCCTCCGTTCTT 60.905 60.000 0.00 0.00 0.00 2.52
4582 5715 1.305381 CACCCTCCTCCTCCGTTCT 60.305 63.158 0.00 0.00 0.00 3.01
4583 5716 2.359967 CCACCCTCCTCCTCCGTTC 61.360 68.421 0.00 0.00 0.00 3.95
4584 5717 2.284699 CCACCCTCCTCCTCCGTT 60.285 66.667 0.00 0.00 0.00 4.44
4585 5718 4.400251 CCCACCCTCCTCCTCCGT 62.400 72.222 0.00 0.00 0.00 4.69
4658 5806 3.775654 CTCACCGACCCCTCCTGC 61.776 72.222 0.00 0.00 0.00 4.85
4679 5827 0.740164 CGCTCATGCTCTTCTGCTGT 60.740 55.000 0.00 0.00 36.97 4.40
4755 5903 0.950836 TGGTGTTTCATTCAGGCGTG 59.049 50.000 0.00 0.00 0.00 5.34
4795 5943 8.846607 GCTCACACCAAGTTAATTAAAATTACG 58.153 33.333 0.00 0.00 31.03 3.18
4798 5946 8.421002 ACAGCTCACACCAAGTTAATTAAAATT 58.579 29.630 0.00 0.00 0.00 1.82
4841 5997 6.591062 AGCACATTTAAACCTATAAACGACGA 59.409 34.615 0.00 0.00 0.00 4.20
4845 6001 8.846607 GTTTCAGCACATTTAAACCTATAAACG 58.153 33.333 0.00 0.00 0.00 3.60
4846 6002 8.846607 CGTTTCAGCACATTTAAACCTATAAAC 58.153 33.333 0.00 0.00 0.00 2.01
4847 6003 8.784994 TCGTTTCAGCACATTTAAACCTATAAA 58.215 29.630 0.00 0.00 0.00 1.40
4848 6004 8.325421 TCGTTTCAGCACATTTAAACCTATAA 57.675 30.769 0.00 0.00 0.00 0.98
4850 6006 6.811253 TCGTTTCAGCACATTTAAACCTAT 57.189 33.333 0.00 0.00 0.00 2.57
4859 6015 4.771590 ATGACAATCGTTTCAGCACATT 57.228 36.364 0.00 0.00 0.00 2.71
5138 7269 7.816995 GCGGAATGATAGTGAATAGAGAGAAAT 59.183 37.037 0.00 0.00 0.00 2.17
5488 8080 2.024414 GGGACTCAAAACACTTGCACT 58.976 47.619 0.00 0.00 0.00 4.40
5511 8103 5.398603 AAACACCAGAAAATGTTCACACA 57.601 34.783 0.00 0.00 38.08 3.72
5577 8172 7.438160 CACTACTTCAGTAAACACAGAACATCA 59.562 37.037 0.00 0.00 34.98 3.07
5578 8173 7.569591 GCACTACTTCAGTAAACACAGAACATC 60.570 40.741 0.00 0.00 34.98 3.06
5579 8174 6.202954 GCACTACTTCAGTAAACACAGAACAT 59.797 38.462 0.00 0.00 34.98 2.71
5580 8175 5.522460 GCACTACTTCAGTAAACACAGAACA 59.478 40.000 0.00 0.00 34.98 3.18
5581 8176 5.522460 TGCACTACTTCAGTAAACACAGAAC 59.478 40.000 0.00 0.00 34.98 3.01
5582 8177 5.666462 TGCACTACTTCAGTAAACACAGAA 58.334 37.500 0.00 0.00 34.98 3.02
5612 8211 2.960819 ACTCGCAACTATGAACTGACC 58.039 47.619 0.00 0.00 0.00 4.02
5670 8269 9.137459 TGATCTACAAGTCCAAATAACCAAAAA 57.863 29.630 0.00 0.00 0.00 1.94
5671 8270 8.698973 TGATCTACAAGTCCAAATAACCAAAA 57.301 30.769 0.00 0.00 0.00 2.44
5746 8345 2.159099 TCGTGCCAATGATACTGACCTC 60.159 50.000 0.00 0.00 0.00 3.85
5747 8346 1.831106 TCGTGCCAATGATACTGACCT 59.169 47.619 0.00 0.00 0.00 3.85
5786 8385 1.630148 CAGCGTCCTTAACTTCCTCG 58.370 55.000 0.00 0.00 0.00 4.63
5800 8399 3.699894 CTGGACTCCCTGCAGCGT 61.700 66.667 8.66 4.61 30.59 5.07
5808 8407 3.084786 CAAAGGAATCAACTGGACTCCC 58.915 50.000 0.00 0.00 0.00 4.30
5809 8408 3.753797 GTCAAAGGAATCAACTGGACTCC 59.246 47.826 0.00 0.00 0.00 3.85
5810 8409 3.753797 GGTCAAAGGAATCAACTGGACTC 59.246 47.826 0.00 0.00 0.00 3.36
5884 8483 2.141517 CATTGACCTGAGATGGCGATC 58.858 52.381 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.