Multiple sequence alignment - TraesCS5A01G375400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G375400 chr5A 100.000 5978 0 0 1 5978 573557804 573563781 0.000000e+00 11040.0
1 TraesCS5A01G375400 chr5A 96.522 115 2 1 4705 4819 537119677 537119789 7.910000e-44 189.0
2 TraesCS5A01G375400 chr5A 95.652 115 3 1 4706 4820 422874846 422874734 3.680000e-42 183.0
3 TraesCS5A01G375400 chr5D 96.061 2945 89 11 1762 4695 454170744 454173672 0.000000e+00 4771.0
4 TraesCS5A01G375400 chr5D 95.340 1631 53 8 142 1764 454169095 454170710 0.000000e+00 2569.0
5 TraesCS5A01G375400 chr5D 85.111 994 64 36 4815 5760 454173681 454174638 0.000000e+00 939.0
6 TraesCS5A01G375400 chr5D 97.297 74 2 0 1 74 454169017 454169090 6.290000e-25 126.0
7 TraesCS5A01G375400 chr5D 93.182 44 3 0 3682 3725 283712171 283712128 1.390000e-06 65.8
8 TraesCS5A01G375400 chr5B 95.859 2946 99 14 1762 4695 555121894 555124828 0.000000e+00 4743.0
9 TraesCS5A01G375400 chr5B 95.544 1773 57 7 1 1764 555120101 555121860 0.000000e+00 2817.0
10 TraesCS5A01G375400 chr5B 85.983 478 25 15 5251 5710 555125283 555125736 1.950000e-129 473.0
11 TraesCS5A01G375400 chr5B 85.714 378 23 11 4815 5169 555124837 555125206 2.630000e-98 370.0
12 TraesCS5A01G375400 chr5B 91.071 168 15 0 5756 5923 591647026 591646859 1.680000e-55 228.0
13 TraesCS5A01G375400 chr7D 92.308 169 13 0 5759 5927 245316022 245316190 2.150000e-59 241.0
14 TraesCS5A01G375400 chr1D 92.169 166 13 0 5758 5923 469818448 469818613 1.000000e-57 235.0
15 TraesCS5A01G375400 chr1B 91.716 169 14 0 5755 5923 416773343 416773511 1.000000e-57 235.0
16 TraesCS5A01G375400 chr1B 91.617 167 14 0 5758 5924 34233589 34233755 1.300000e-56 231.0
17 TraesCS5A01G375400 chr2D 90.805 174 16 0 5758 5931 27328911 27329084 3.600000e-57 233.0
18 TraesCS5A01G375400 chr2D 84.615 169 15 6 3558 3725 416135735 416135893 2.230000e-34 158.0
19 TraesCS5A01G375400 chr2D 85.093 161 14 1 3565 3725 424368901 424368751 8.020000e-34 156.0
20 TraesCS5A01G375400 chr2D 84.024 169 14 9 3558 3725 416180077 416179921 3.730000e-32 150.0
21 TraesCS5A01G375400 chr4B 91.566 166 14 0 5758 5923 638578702 638578537 4.660000e-56 230.0
22 TraesCS5A01G375400 chr3D 90.173 173 16 1 5752 5924 105427075 105427246 2.170000e-54 224.0
23 TraesCS5A01G375400 chr3A 89.385 179 18 1 5746 5923 585605816 585605638 2.170000e-54 224.0
24 TraesCS5A01G375400 chr3A 93.023 129 2 6 4702 4826 91478339 91478214 1.320000e-41 182.0
25 TraesCS5A01G375400 chr3A 81.871 171 20 3 3556 3725 201672198 201672038 3.760000e-27 134.0
26 TraesCS5A01G375400 chr6D 96.460 113 2 1 4706 4818 68900008 68899898 1.020000e-42 185.0
27 TraesCS5A01G375400 chr6D 86.335 161 12 1 3565 3725 449760387 449760237 3.710000e-37 167.0
28 TraesCS5A01G375400 chr1A 95.726 117 2 2 4706 4821 427816463 427816349 1.020000e-42 185.0
29 TraesCS5A01G375400 chr4A 95.652 115 3 1 4701 4815 729682012 729681900 3.680000e-42 183.0
30 TraesCS5A01G375400 chr6A 92.248 129 6 3 4704 4831 450094820 450094695 4.760000e-41 180.0
31 TraesCS5A01G375400 chr2B 92.683 123 7 1 4704 4826 509703147 509703027 6.160000e-40 176.0
32 TraesCS5A01G375400 chr2A 92.742 124 5 3 4697 4819 173127150 173127270 6.160000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G375400 chr5A 573557804 573563781 5977 False 11040.00 11040 100.00000 1 5978 1 chr5A.!!$F2 5977
1 TraesCS5A01G375400 chr5D 454169017 454174638 5621 False 2101.25 4771 93.45225 1 5760 4 chr5D.!!$F1 5759
2 TraesCS5A01G375400 chr5B 555120101 555125736 5635 False 2100.75 4743 90.77500 1 5710 4 chr5B.!!$F1 5709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 121 0.759346 CCCTTAGCGCCCTTATCAGT 59.241 55.000 2.29 0.00 0.00 3.41 F
892 903 1.139654 AGCACTCGCCATCATACATGT 59.860 47.619 2.69 2.69 39.83 3.21 F
2218 2273 0.038021 TATCTGCTGGCTGCCACAAA 59.962 50.000 19.30 8.47 42.00 2.83 F
2508 2564 0.537371 TGCGACAGTGAGGAGAGACA 60.537 55.000 0.00 0.00 0.00 3.41 F
2551 2607 1.909986 GAGTAAGGAGGCTCAAACCCT 59.090 52.381 17.69 0.64 34.77 4.34 F
3820 3880 2.007360 CTGAAGCAGCGACAAGAGAT 57.993 50.000 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2021 1.209261 TCTTTGTGGTGCTGACTCACA 59.791 47.619 0.00 0.0 39.31 3.58 R
2551 2607 0.036164 ACGTCATGCTTAGCCAACCA 59.964 50.000 0.29 0.0 0.00 3.67 R
3559 3619 3.764885 GCAATCCTGTACTTGCGATTT 57.235 42.857 2.26 0.0 38.47 2.17 R
4502 4568 0.400213 TCCTTGACGGTTCCAGCATT 59.600 50.000 0.00 0.0 0.00 3.56 R
4503 4569 0.620556 ATCCTTGACGGTTCCAGCAT 59.379 50.000 0.00 0.0 0.00 3.79 R
5549 5688 0.318275 GAGATGAGATCCACCGTCGC 60.318 60.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 6.128526 GCCCATCGTTATTGCTCTTATTAGTC 60.129 42.308 0.00 0.00 0.00 2.59
78 80 7.946655 TCGTTATTGCTCTTATTAGTCATGG 57.053 36.000 0.00 0.00 0.00 3.66
119 121 0.759346 CCCTTAGCGCCCTTATCAGT 59.241 55.000 2.29 0.00 0.00 3.41
120 122 1.141053 CCCTTAGCGCCCTTATCAGTT 59.859 52.381 2.29 0.00 0.00 3.16
121 123 2.367567 CCCTTAGCGCCCTTATCAGTTA 59.632 50.000 2.29 0.00 0.00 2.24
122 124 3.008049 CCCTTAGCGCCCTTATCAGTTAT 59.992 47.826 2.29 0.00 0.00 1.89
123 125 4.246458 CCTTAGCGCCCTTATCAGTTATC 58.754 47.826 2.29 0.00 0.00 1.75
124 126 4.262463 CCTTAGCGCCCTTATCAGTTATCA 60.262 45.833 2.29 0.00 0.00 2.15
125 127 3.393089 AGCGCCCTTATCAGTTATCAG 57.607 47.619 2.29 0.00 0.00 2.90
164 166 7.748847 ACATGGCTACGTTTTATGTTTTCTAG 58.251 34.615 0.00 0.00 0.00 2.43
229 231 5.225743 CGACGTAGCAATGAAATTTGTCATG 59.774 40.000 0.00 0.00 38.28 3.07
230 232 6.012658 ACGTAGCAATGAAATTTGTCATGT 57.987 33.333 0.00 0.00 38.28 3.21
231 233 7.139896 ACGTAGCAATGAAATTTGTCATGTA 57.860 32.000 0.00 0.00 38.28 2.29
232 234 7.021196 ACGTAGCAATGAAATTTGTCATGTAC 58.979 34.615 0.00 0.00 38.28 2.90
233 235 7.020602 CGTAGCAATGAAATTTGTCATGTACA 58.979 34.615 0.00 0.00 38.28 2.90
283 285 2.011617 AAGACCAGTGGGCAAGCCTT 62.012 55.000 19.84 0.00 37.90 4.35
313 315 3.202097 TGCATCATACGGTACAACCATG 58.798 45.455 0.00 0.00 38.47 3.66
319 321 5.492895 TCATACGGTACAACCATGTGAAAT 58.507 37.500 0.00 0.00 40.84 2.17
320 322 5.941058 TCATACGGTACAACCATGTGAAATT 59.059 36.000 0.00 0.00 40.84 1.82
334 336 5.003692 TGTGAAATTGTGCTTGCAACTTA 57.996 34.783 0.00 0.00 0.00 2.24
336 338 4.803088 GTGAAATTGTGCTTGCAACTTACA 59.197 37.500 0.00 0.00 0.00 2.41
343 345 4.084066 TGTGCTTGCAACTTACACTTATCG 60.084 41.667 14.59 0.00 32.49 2.92
400 402 8.154649 TGTTTTCTATCTGAAAGTGGAAGTTC 57.845 34.615 0.00 0.00 44.40 3.01
491 493 7.739498 TGAAGTTGTCCTGTAAACCTAATTC 57.261 36.000 0.00 0.00 0.00 2.17
525 527 2.489329 CGCCATATCTTAAGGGCCATTG 59.511 50.000 14.12 0.00 43.50 2.82
539 541 1.883926 GCCATTGTTTCGTTGGTACCT 59.116 47.619 14.36 0.00 32.90 3.08
545 547 6.596497 CCATTGTTTCGTTGGTACCTAAGTAT 59.404 38.462 14.36 0.00 0.00 2.12
546 548 7.765360 CCATTGTTTCGTTGGTACCTAAGTATA 59.235 37.037 14.36 0.00 0.00 1.47
575 586 6.356556 TGTGTATCACTAAGGAAATGATGGG 58.643 40.000 1.72 0.00 34.86 4.00
578 589 4.591321 TCACTAAGGAAATGATGGGCTT 57.409 40.909 0.00 0.00 0.00 4.35
593 604 7.953005 TGATGGGCTTTATTTTACAATGAGA 57.047 32.000 0.00 0.00 0.00 3.27
669 680 4.524802 TTGCCCAGATTTCAGATGGTAT 57.475 40.909 0.00 0.00 31.85 2.73
687 698 4.145052 GGTATTTCATCACTTCCCCCATC 58.855 47.826 0.00 0.00 0.00 3.51
791 802 7.198390 ACTTATGTGTGATATTTTCTGCATGC 58.802 34.615 11.82 11.82 0.00 4.06
891 902 1.529865 CAGCACTCGCCATCATACATG 59.470 52.381 0.00 0.00 39.83 3.21
892 903 1.139654 AGCACTCGCCATCATACATGT 59.860 47.619 2.69 2.69 39.83 3.21
893 904 2.365293 AGCACTCGCCATCATACATGTA 59.635 45.455 8.27 8.27 39.83 2.29
1111 1125 7.308469 GCCTGATATTGAAAGATGATGACTTCC 60.308 40.741 0.00 0.00 0.00 3.46
1423 1437 2.636893 CCTAGGAGGAATGATCACCCAG 59.363 54.545 1.05 3.83 37.67 4.45
1586 1600 9.106977 TGTATACCATAAATCCTGGCAGTTATA 57.893 33.333 14.43 1.56 37.27 0.98
1618 1632 7.335422 GTCACACAGTGATATCCAAGAAAAGAT 59.665 37.037 7.81 0.00 44.63 2.40
1909 1964 4.020573 TCTCGTGTATGGGTTCATTGTCTT 60.021 41.667 0.00 0.00 34.96 3.01
1912 1967 4.635765 CGTGTATGGGTTCATTGTCTTGAT 59.364 41.667 0.00 0.00 34.96 2.57
1966 2021 2.593956 GGAGAGGGTTTGGTCGCCT 61.594 63.158 0.00 0.00 30.47 5.52
1987 2042 2.158769 TGTGAGTCAGCACCACAAAGAT 60.159 45.455 0.00 0.00 37.80 2.40
2218 2273 0.038021 TATCTGCTGGCTGCCACAAA 59.962 50.000 19.30 8.47 42.00 2.83
2366 2421 6.041296 AGGAAATGTGAATCAGTTTTCTTGCT 59.959 34.615 13.89 4.60 34.40 3.91
2380 2436 0.538057 CTTGCTTTGGAGACTGGCCA 60.538 55.000 4.71 4.71 0.00 5.36
2416 2472 5.061721 ACCTGATTCCAGTTTTGTAACCT 57.938 39.130 0.00 0.00 38.74 3.50
2497 2553 4.829064 TTGCTAAAAAGAATGCGACAGT 57.171 36.364 0.00 0.00 0.00 3.55
2508 2564 0.537371 TGCGACAGTGAGGAGAGACA 60.537 55.000 0.00 0.00 0.00 3.41
2522 2578 3.243035 GGAGAGACATCACACAGATCTCG 60.243 52.174 0.00 0.00 34.44 4.04
2551 2607 1.909986 GAGTAAGGAGGCTCAAACCCT 59.090 52.381 17.69 0.64 34.77 4.34
3252 3310 7.903995 AACACCAATTAGTTTTGCATAATGG 57.096 32.000 5.29 5.29 0.00 3.16
3263 3321 8.366359 AGTTTTGCATAATGGTTTCCTATTCT 57.634 30.769 0.00 0.00 0.00 2.40
3367 3425 6.812160 GGATTACTGTTGTTCGTGACTTATCT 59.188 38.462 0.00 0.00 0.00 1.98
3372 3430 4.447724 TGTTGTTCGTGACTTATCTCTTGC 59.552 41.667 0.00 0.00 0.00 4.01
3497 3555 8.807118 TGTTGTTATCTCAGCTTAGGATATAGG 58.193 37.037 0.00 0.00 0.00 2.57
3504 3562 8.582657 TCTCAGCTTAGGATATAGGTATTCAC 57.417 38.462 0.00 0.00 0.00 3.18
3526 3586 7.574607 TCACATGAAGAGTATAGACTACAGGA 58.425 38.462 0.00 1.28 35.45 3.86
3540 3600 4.848357 ACTACAGGACATTTTAGCATGCT 58.152 39.130 25.99 25.99 0.00 3.79
3559 3619 6.595326 GCATGCTACTATGAATATTGCAGGTA 59.405 38.462 11.37 0.00 34.03 3.08
3565 3625 7.133891 ACTATGAATATTGCAGGTAAATCGC 57.866 36.000 0.00 0.00 0.00 4.58
3736 3796 3.582647 TGGCGGATATGATAACCATGACT 59.417 43.478 0.00 0.00 36.71 3.41
3820 3880 2.007360 CTGAAGCAGCGACAAGAGAT 57.993 50.000 0.00 0.00 0.00 2.75
4343 4409 5.061853 CACTGGAGGGATTAGTCATGAATG 58.938 45.833 5.80 0.00 0.00 2.67
4399 4465 8.123639 TGAAACTGTATGTTCTCTAGTTAGCT 57.876 34.615 0.00 0.00 38.03 3.32
4513 4579 7.553044 ACTTGTAAATAGTCTAATGCTGGAACC 59.447 37.037 0.00 0.00 0.00 3.62
4526 4592 2.418976 GCTGGAACCGTCAAGGATTTAC 59.581 50.000 0.00 0.00 45.00 2.01
4545 4611 1.280710 ACATCAGGCATTACCACGGAA 59.719 47.619 0.00 0.00 43.14 4.30
4634 4702 6.238484 CCACTTAGTATATGCTTGTGCCTTTC 60.238 42.308 15.81 0.00 38.71 2.62
4662 4730 8.474025 ACCTTGTTTTTATCTGTTTTGTCATGA 58.526 29.630 0.00 0.00 0.00 3.07
4669 4737 4.963318 TCTGTTTTGTCATGAGGTCTCT 57.037 40.909 0.00 0.00 0.00 3.10
4683 4751 6.907853 TGAGGTCTCTTGGACAGATATATG 57.092 41.667 0.00 0.00 46.16 1.78
4695 4763 9.521841 TTGGACAGATATATGAGAACTAGGTAG 57.478 37.037 3.93 0.00 0.00 3.18
4696 4764 8.670490 TGGACAGATATATGAGAACTAGGTAGT 58.330 37.037 3.93 0.00 38.39 2.73
4713 4781 9.639563 ACTAGGTAGTAATAAAAGTACTCCCTC 57.360 37.037 2.48 0.00 37.32 4.30
4714 4782 7.911130 AGGTAGTAATAAAAGTACTCCCTCC 57.089 40.000 0.00 0.00 33.84 4.30
4715 4783 6.548993 AGGTAGTAATAAAAGTACTCCCTCCG 59.451 42.308 0.00 0.00 33.84 4.63
4716 4784 6.322456 GGTAGTAATAAAAGTACTCCCTCCGT 59.678 42.308 0.00 0.00 33.80 4.69
4717 4785 6.864151 AGTAATAAAAGTACTCCCTCCGTT 57.136 37.500 0.00 0.00 0.00 4.44
4718 4786 6.871844 AGTAATAAAAGTACTCCCTCCGTTC 58.128 40.000 0.00 0.00 0.00 3.95
4719 4787 5.750352 AATAAAAGTACTCCCTCCGTTCA 57.250 39.130 0.00 0.00 0.00 3.18
4720 4788 3.397849 AAAAGTACTCCCTCCGTTCAC 57.602 47.619 0.00 0.00 0.00 3.18
4721 4789 2.305858 AAGTACTCCCTCCGTTCACT 57.694 50.000 0.00 0.00 0.00 3.41
4722 4790 2.305858 AGTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
4723 4791 2.606378 AGTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
4724 4792 2.970640 AGTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
4725 4793 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
4726 4794 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
4727 4795 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
4728 4796 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
4729 4797 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
4730 4798 3.388676 TCCCTCCGTTCACTTTTGTAAGA 59.611 43.478 0.00 0.00 35.30 2.10
4731 4799 3.497262 CCCTCCGTTCACTTTTGTAAGAC 59.503 47.826 0.00 0.00 35.30 3.01
4732 4800 3.497262 CCTCCGTTCACTTTTGTAAGACC 59.503 47.826 0.00 0.00 35.30 3.85
4733 4801 4.377897 CTCCGTTCACTTTTGTAAGACCT 58.622 43.478 0.00 0.00 35.30 3.85
4734 4802 4.773013 TCCGTTCACTTTTGTAAGACCTT 58.227 39.130 0.00 0.00 35.30 3.50
4735 4803 5.187687 TCCGTTCACTTTTGTAAGACCTTT 58.812 37.500 0.00 0.00 35.30 3.11
4736 4804 5.648960 TCCGTTCACTTTTGTAAGACCTTTT 59.351 36.000 0.00 0.00 35.30 2.27
4737 4805 6.822676 TCCGTTCACTTTTGTAAGACCTTTTA 59.177 34.615 0.00 0.00 35.30 1.52
4738 4806 7.011669 TCCGTTCACTTTTGTAAGACCTTTTAG 59.988 37.037 0.00 0.00 35.30 1.85
4739 4807 7.011669 CCGTTCACTTTTGTAAGACCTTTTAGA 59.988 37.037 0.00 0.00 35.30 2.10
4740 4808 7.849515 CGTTCACTTTTGTAAGACCTTTTAGAC 59.150 37.037 0.00 0.00 35.30 2.59
4741 4809 8.671028 GTTCACTTTTGTAAGACCTTTTAGACA 58.329 33.333 0.00 0.00 35.30 3.41
4742 4810 8.974060 TCACTTTTGTAAGACCTTTTAGACAT 57.026 30.769 0.00 0.00 35.30 3.06
4743 4811 9.403583 TCACTTTTGTAAGACCTTTTAGACATT 57.596 29.630 0.00 0.00 35.30 2.71
4754 4822 9.384764 AGACCTTTTAGACATTTATAAGACAGC 57.615 33.333 0.00 0.00 0.00 4.40
4755 4823 9.162764 GACCTTTTAGACATTTATAAGACAGCA 57.837 33.333 0.00 0.00 0.00 4.41
4756 4824 8.947115 ACCTTTTAGACATTTATAAGACAGCAC 58.053 33.333 0.00 0.00 0.00 4.40
4757 4825 8.398665 CCTTTTAGACATTTATAAGACAGCACC 58.601 37.037 0.00 0.00 0.00 5.01
4758 4826 9.167311 CTTTTAGACATTTATAAGACAGCACCT 57.833 33.333 0.00 0.00 0.00 4.00
4763 4831 8.947115 AGACATTTATAAGACAGCACCTAAAAC 58.053 33.333 0.00 0.00 0.00 2.43
4764 4832 8.630054 ACATTTATAAGACAGCACCTAAAACA 57.370 30.769 0.00 0.00 0.00 2.83
4765 4833 8.730680 ACATTTATAAGACAGCACCTAAAACAG 58.269 33.333 0.00 0.00 0.00 3.16
4766 4834 8.730680 CATTTATAAGACAGCACCTAAAACAGT 58.269 33.333 0.00 0.00 0.00 3.55
4767 4835 8.685838 TTTATAAGACAGCACCTAAAACAGTT 57.314 30.769 0.00 0.00 0.00 3.16
4768 4836 6.803154 ATAAGACAGCACCTAAAACAGTTC 57.197 37.500 0.00 0.00 0.00 3.01
4769 4837 4.150897 AGACAGCACCTAAAACAGTTCA 57.849 40.909 0.00 0.00 0.00 3.18
4770 4838 4.523083 AGACAGCACCTAAAACAGTTCAA 58.477 39.130 0.00 0.00 0.00 2.69
4771 4839 5.133221 AGACAGCACCTAAAACAGTTCAAT 58.867 37.500 0.00 0.00 0.00 2.57
4772 4840 5.594317 AGACAGCACCTAAAACAGTTCAATT 59.406 36.000 0.00 0.00 0.00 2.32
4773 4841 6.096846 AGACAGCACCTAAAACAGTTCAATTT 59.903 34.615 0.00 0.00 0.00 1.82
4774 4842 6.273071 ACAGCACCTAAAACAGTTCAATTTC 58.727 36.000 0.00 0.00 0.00 2.17
4775 4843 6.127479 ACAGCACCTAAAACAGTTCAATTTCA 60.127 34.615 0.00 0.00 0.00 2.69
4776 4844 6.418819 CAGCACCTAAAACAGTTCAATTTCAG 59.581 38.462 0.00 0.00 0.00 3.02
4777 4845 5.175673 GCACCTAAAACAGTTCAATTTCAGC 59.824 40.000 0.00 0.00 0.00 4.26
4778 4846 6.507023 CACCTAAAACAGTTCAATTTCAGCT 58.493 36.000 0.00 0.00 0.00 4.24
4779 4847 6.418819 CACCTAAAACAGTTCAATTTCAGCTG 59.581 38.462 7.63 7.63 0.00 4.24
4780 4848 6.096846 ACCTAAAACAGTTCAATTTCAGCTGT 59.903 34.615 14.67 0.00 41.51 4.40
4781 4849 6.638468 CCTAAAACAGTTCAATTTCAGCTGTC 59.362 38.462 14.67 0.00 39.19 3.51
4782 4850 4.574599 AACAGTTCAATTTCAGCTGTCC 57.425 40.909 14.67 0.00 39.19 4.02
4783 4851 3.825328 ACAGTTCAATTTCAGCTGTCCT 58.175 40.909 14.67 0.00 35.78 3.85
4784 4852 4.973168 ACAGTTCAATTTCAGCTGTCCTA 58.027 39.130 14.67 0.00 35.78 2.94
4785 4853 5.376625 ACAGTTCAATTTCAGCTGTCCTAA 58.623 37.500 14.67 4.81 35.78 2.69
4786 4854 5.827797 ACAGTTCAATTTCAGCTGTCCTAAA 59.172 36.000 14.67 7.20 35.78 1.85
4787 4855 6.145535 CAGTTCAATTTCAGCTGTCCTAAAC 58.854 40.000 14.67 11.99 0.00 2.01
4788 4856 5.049405 AGTTCAATTTCAGCTGTCCTAAACG 60.049 40.000 14.67 2.54 0.00 3.60
4789 4857 4.637276 TCAATTTCAGCTGTCCTAAACGA 58.363 39.130 14.67 4.79 0.00 3.85
4790 4858 4.451096 TCAATTTCAGCTGTCCTAAACGAC 59.549 41.667 14.67 0.00 0.00 4.34
4791 4859 3.746045 TTTCAGCTGTCCTAAACGACT 57.254 42.857 14.67 0.00 33.70 4.18
4792 4860 3.746045 TTCAGCTGTCCTAAACGACTT 57.254 42.857 14.67 0.00 33.70 3.01
4793 4861 4.859304 TTCAGCTGTCCTAAACGACTTA 57.141 40.909 14.67 0.00 33.70 2.24
4794 4862 4.170292 TCAGCTGTCCTAAACGACTTAC 57.830 45.455 14.67 0.00 33.70 2.34
4795 4863 3.570975 TCAGCTGTCCTAAACGACTTACA 59.429 43.478 14.67 0.00 33.70 2.41
4796 4864 4.038282 TCAGCTGTCCTAAACGACTTACAA 59.962 41.667 14.67 0.00 33.70 2.41
4797 4865 4.748102 CAGCTGTCCTAAACGACTTACAAA 59.252 41.667 5.25 0.00 33.70 2.83
4798 4866 5.235616 CAGCTGTCCTAAACGACTTACAAAA 59.764 40.000 5.25 0.00 33.70 2.44
4799 4867 5.465724 AGCTGTCCTAAACGACTTACAAAAG 59.534 40.000 0.00 0.00 38.77 2.27
4801 4869 6.592798 TGTCCTAAACGACTTACAAAAGTG 57.407 37.500 0.00 0.00 46.09 3.16
4802 4870 6.339730 TGTCCTAAACGACTTACAAAAGTGA 58.660 36.000 0.00 0.00 46.09 3.41
4803 4871 6.817641 TGTCCTAAACGACTTACAAAAGTGAA 59.182 34.615 0.00 0.00 46.09 3.18
4804 4872 7.121911 GTCCTAAACGACTTACAAAAGTGAAC 58.878 38.462 0.00 0.00 46.09 3.18
4805 4873 6.817641 TCCTAAACGACTTACAAAAGTGAACA 59.182 34.615 0.00 0.00 46.09 3.18
4806 4874 7.010738 TCCTAAACGACTTACAAAAGTGAACAG 59.989 37.037 0.00 0.00 46.09 3.16
4807 4875 6.730960 AAACGACTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 46.09 3.41
4808 4876 5.968387 ACGACTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 46.09 3.35
4809 4877 4.809426 ACGACTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 46.09 3.69
4810 4878 4.211374 CGACTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 46.09 4.30
4811 4879 5.365619 GACTTACAAAAGTGAACAGAGGGA 58.634 41.667 0.00 0.00 46.09 4.20
4812 4880 5.368989 ACTTACAAAAGTGAACAGAGGGAG 58.631 41.667 0.00 0.00 44.40 4.30
4813 4881 3.933861 ACAAAAGTGAACAGAGGGAGT 57.066 42.857 0.00 0.00 0.00 3.85
4858 4926 4.743057 TCACTGAGGTGATAGGTGAATG 57.257 45.455 0.00 0.00 46.19 2.67
4878 4955 6.205853 TGAATGGTAGTGTTGATTTTAAGCGT 59.794 34.615 0.00 0.00 0.00 5.07
4926 5008 0.828762 TGTTTGCTGGCTGCTCCATT 60.829 50.000 17.45 0.00 45.50 3.16
4927 5009 0.108945 GTTTGCTGGCTGCTCCATTC 60.109 55.000 17.45 0.00 45.50 2.67
4928 5010 0.540133 TTTGCTGGCTGCTCCATTCA 60.540 50.000 17.45 0.00 45.50 2.57
4929 5011 1.246056 TTGCTGGCTGCTCCATTCAC 61.246 55.000 17.45 0.00 45.50 3.18
4941 5024 3.620719 GCTCCATTCACATTCTGACTCCA 60.621 47.826 0.00 0.00 0.00 3.86
4959 5048 3.163467 TCCATTCATTCATGTTGGTGCA 58.837 40.909 0.00 0.00 35.31 4.57
5010 5099 4.809496 CCGCTCCAGCCCAGCATT 62.809 66.667 0.00 0.00 36.61 3.56
5011 5100 3.515286 CGCTCCAGCCCAGCATTG 61.515 66.667 0.00 0.00 36.61 2.82
5012 5101 3.834799 GCTCCAGCCCAGCATTGC 61.835 66.667 0.00 0.00 36.82 3.56
5079 5174 2.196997 ATTAACAGCAGCCGCCCTCA 62.197 55.000 0.00 0.00 39.83 3.86
5090 5185 2.026262 AGCCGCCCTCATTTTTCTTCTA 60.026 45.455 0.00 0.00 0.00 2.10
5094 5189 4.459337 CCGCCCTCATTTTTCTTCTACTTT 59.541 41.667 0.00 0.00 0.00 2.66
5135 5232 2.359230 GCTCCAGTGTCACCAGCC 60.359 66.667 0.00 0.00 0.00 4.85
5137 5234 1.757306 CTCCAGTGTCACCAGCCTT 59.243 57.895 0.00 0.00 0.00 4.35
5138 5235 0.976641 CTCCAGTGTCACCAGCCTTA 59.023 55.000 0.00 0.00 0.00 2.69
5139 5236 1.556911 CTCCAGTGTCACCAGCCTTAT 59.443 52.381 0.00 0.00 0.00 1.73
5140 5237 1.278985 TCCAGTGTCACCAGCCTTATG 59.721 52.381 0.00 0.00 0.00 1.90
5199 5317 2.787723 GCGAACCGTTTGTAGCATCATG 60.788 50.000 0.43 0.00 32.80 3.07
5234 5356 4.519191 TTTTTGTGTAAACGTCGAGACC 57.481 40.909 0.00 0.00 0.00 3.85
5235 5357 2.138596 TTGTGTAAACGTCGAGACCC 57.861 50.000 0.00 0.00 0.00 4.46
5236 5358 0.040157 TGTGTAAACGTCGAGACCCG 60.040 55.000 0.00 0.00 40.25 5.28
5237 5359 0.730494 GTGTAAACGTCGAGACCCGG 60.730 60.000 0.00 0.00 39.14 5.73
5238 5360 1.803117 GTAAACGTCGAGACCCGGC 60.803 63.158 0.00 0.00 39.99 6.13
5239 5361 2.993471 TAAACGTCGAGACCCGGCC 61.993 63.158 0.00 0.00 40.33 6.13
5257 5379 2.987547 GGTCCAGACCCGTCGTGA 60.988 66.667 5.46 0.00 45.68 4.35
5258 5380 2.348888 GGTCCAGACCCGTCGTGAT 61.349 63.158 5.46 0.00 45.68 3.06
5261 5383 2.880879 CAGACCCGTCGTGATGCG 60.881 66.667 0.00 0.00 43.01 4.73
5330 5455 2.438434 GTGGAACAGGCCGATGGG 60.438 66.667 0.00 0.00 41.80 4.00
5341 5466 1.832219 CCGATGGGCCAGATGAGAA 59.168 57.895 13.78 0.00 0.00 2.87
5342 5467 0.533755 CCGATGGGCCAGATGAGAAC 60.534 60.000 13.78 0.00 0.00 3.01
5343 5468 0.533755 CGATGGGCCAGATGAGAACC 60.534 60.000 13.78 0.00 0.00 3.62
5389 5522 4.729918 GGCTCACACAGGCTGGGG 62.730 72.222 22.78 14.10 44.64 4.96
5487 5626 2.160205 GGTAGGGCAACACTTTTCTCC 58.840 52.381 0.00 0.00 39.74 3.71
5508 5647 0.101939 GTGGTCTCGGACGGATAACC 59.898 60.000 7.43 7.43 32.65 2.85
5584 5723 6.692486 TCTCATCTCACTTTCTTTCTGGTAC 58.308 40.000 0.00 0.00 0.00 3.34
5585 5724 5.794894 TCATCTCACTTTCTTTCTGGTACC 58.205 41.667 4.43 4.43 0.00 3.34
5586 5725 5.544176 TCATCTCACTTTCTTTCTGGTACCT 59.456 40.000 14.36 0.00 0.00 3.08
5600 5739 3.088532 TGGTACCTCCAAATGATTGTGC 58.911 45.455 14.36 0.00 44.12 4.57
5612 5751 0.168128 GATTGTGCTGTTACCGTGCC 59.832 55.000 0.00 0.00 0.00 5.01
5613 5752 1.573829 ATTGTGCTGTTACCGTGCCG 61.574 55.000 0.00 0.00 0.00 5.69
5614 5753 2.663852 GTGCTGTTACCGTGCCGT 60.664 61.111 0.00 0.00 0.00 5.68
5615 5754 2.663520 TGCTGTTACCGTGCCGTG 60.664 61.111 0.00 0.00 0.00 4.94
5616 5755 4.084888 GCTGTTACCGTGCCGTGC 62.085 66.667 0.00 0.00 0.00 5.34
5618 5757 4.588854 TGTTACCGTGCCGTGCGT 62.589 61.111 0.00 0.00 0.00 5.24
5619 5758 4.067016 GTTACCGTGCCGTGCGTG 62.067 66.667 0.00 0.00 0.00 5.34
5620 5759 4.588854 TTACCGTGCCGTGCGTGT 62.589 61.111 0.00 0.00 0.00 4.49
5621 5760 4.588854 TACCGTGCCGTGCGTGTT 62.589 61.111 0.00 0.00 0.00 3.32
5625 5764 4.605967 GTGCCGTGCGTGTTGGTG 62.606 66.667 0.00 0.00 0.00 4.17
5668 5807 0.882042 CCGGCTATGATGTGTGGAGC 60.882 60.000 0.00 0.00 0.00 4.70
5669 5808 1.217585 CGGCTATGATGTGTGGAGCG 61.218 60.000 0.00 0.00 33.85 5.03
5710 5863 5.691754 GGAAGCTCGAACAAAATTTGTCATT 59.308 36.000 12.11 0.00 44.59 2.57
5721 5874 6.766944 ACAAAATTTGTCATTGCTGGAATTCA 59.233 30.769 5.41 0.00 40.56 2.57
5734 5887 2.943690 TGGAATTCACGGTGTCGAAAAA 59.056 40.909 7.93 0.00 40.11 1.94
5735 5888 3.566322 TGGAATTCACGGTGTCGAAAAAT 59.434 39.130 7.93 0.00 40.11 1.82
5745 5899 2.481185 GTGTCGAAAAATAAGGGACGCA 59.519 45.455 0.00 0.00 37.88 5.24
5750 5904 4.456222 TCGAAAAATAAGGGACGCAATGAA 59.544 37.500 0.00 0.00 0.00 2.57
5755 5909 0.179004 AAGGGACGCAATGAACCACA 60.179 50.000 0.00 0.00 0.00 4.17
5760 5914 2.351726 GGACGCAATGAACCACATCTAC 59.648 50.000 0.00 0.00 38.38 2.59
5761 5915 3.262420 GACGCAATGAACCACATCTACT 58.738 45.455 0.00 0.00 38.38 2.57
5762 5916 3.674997 ACGCAATGAACCACATCTACTT 58.325 40.909 0.00 0.00 38.38 2.24
5763 5917 3.684788 ACGCAATGAACCACATCTACTTC 59.315 43.478 0.00 0.00 38.38 3.01
5764 5918 3.063997 CGCAATGAACCACATCTACTTCC 59.936 47.826 0.00 0.00 38.38 3.46
5765 5919 4.265073 GCAATGAACCACATCTACTTCCT 58.735 43.478 0.00 0.00 38.38 3.36
5766 5920 4.333926 GCAATGAACCACATCTACTTCCTC 59.666 45.833 0.00 0.00 38.38 3.71
5767 5921 4.762289 ATGAACCACATCTACTTCCTCC 57.238 45.455 0.00 0.00 33.46 4.30
5768 5922 2.496070 TGAACCACATCTACTTCCTCCG 59.504 50.000 0.00 0.00 0.00 4.63
5769 5923 2.233305 ACCACATCTACTTCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
5770 5924 2.537143 ACCACATCTACTTCCTCCGTT 58.463 47.619 0.00 0.00 0.00 4.44
5771 5925 2.904434 ACCACATCTACTTCCTCCGTTT 59.096 45.455 0.00 0.00 0.00 3.60
5772 5926 3.056035 ACCACATCTACTTCCTCCGTTTC 60.056 47.826 0.00 0.00 0.00 2.78
5773 5927 3.195825 CCACATCTACTTCCTCCGTTTCT 59.804 47.826 0.00 0.00 0.00 2.52
5774 5928 4.401519 CCACATCTACTTCCTCCGTTTCTA 59.598 45.833 0.00 0.00 0.00 2.10
5775 5929 5.105473 CCACATCTACTTCCTCCGTTTCTAA 60.105 44.000 0.00 0.00 0.00 2.10
5776 5930 6.395629 CACATCTACTTCCTCCGTTTCTAAA 58.604 40.000 0.00 0.00 0.00 1.85
5777 5931 7.042335 CACATCTACTTCCTCCGTTTCTAAAT 58.958 38.462 0.00 0.00 0.00 1.40
5778 5932 8.195436 CACATCTACTTCCTCCGTTTCTAAATA 58.805 37.037 0.00 0.00 0.00 1.40
5779 5933 8.925338 ACATCTACTTCCTCCGTTTCTAAATAT 58.075 33.333 0.00 0.00 0.00 1.28
5780 5934 9.765795 CATCTACTTCCTCCGTTTCTAAATATT 57.234 33.333 0.00 0.00 0.00 1.28
5782 5936 9.595823 TCTACTTCCTCCGTTTCTAAATATTTG 57.404 33.333 11.05 1.65 0.00 2.32
5783 5937 9.379791 CTACTTCCTCCGTTTCTAAATATTTGT 57.620 33.333 11.05 0.00 0.00 2.83
5784 5938 8.265165 ACTTCCTCCGTTTCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
5785 5939 8.101419 ACTTCCTCCGTTTCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
5786 5940 8.857694 TTCCTCCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
5787 5941 8.857694 TCCTCCGTTTCTAAATATTTGTCTTT 57.142 30.769 11.05 0.00 0.00 2.52
5788 5942 8.943002 TCCTCCGTTTCTAAATATTTGTCTTTC 58.057 33.333 11.05 0.00 0.00 2.62
5789 5943 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
5807 5961 9.607988 TGTCTTTCTAAAGATTACAACAAGTGA 57.392 29.630 8.31 0.00 45.83 3.41
5808 5962 9.865484 GTCTTTCTAAAGATTACAACAAGTGAC 57.135 33.333 8.31 0.00 45.83 3.67
5809 5963 9.832445 TCTTTCTAAAGATTACAACAAGTGACT 57.168 29.630 1.00 0.00 39.95 3.41
5816 5970 8.462143 AAGATTACAACAAGTGACTACATACG 57.538 34.615 0.00 0.00 0.00 3.06
5817 5971 7.823665 AGATTACAACAAGTGACTACATACGA 58.176 34.615 0.00 0.00 0.00 3.43
5818 5972 8.301720 AGATTACAACAAGTGACTACATACGAA 58.698 33.333 0.00 0.00 0.00 3.85
5819 5973 7.862741 TTACAACAAGTGACTACATACGAAG 57.137 36.000 0.00 0.00 0.00 3.79
5820 5974 4.684703 ACAACAAGTGACTACATACGAAGC 59.315 41.667 0.00 0.00 0.00 3.86
5821 5975 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
5822 5976 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
5823 5977 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
5824 5978 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
5825 5979 5.840940 AGTGACTACATACGAAGCAAAAC 57.159 39.130 0.00 0.00 0.00 2.43
5826 5980 4.384846 AGTGACTACATACGAAGCAAAACG 59.615 41.667 0.00 0.00 0.00 3.60
5827 5981 4.383649 GTGACTACATACGAAGCAAAACGA 59.616 41.667 0.00 0.00 0.00 3.85
5828 5982 4.619760 TGACTACATACGAAGCAAAACGAG 59.380 41.667 0.00 0.00 0.00 4.18
5829 5983 4.553323 ACTACATACGAAGCAAAACGAGT 58.447 39.130 0.00 0.00 0.00 4.18
5830 5984 3.788434 ACATACGAAGCAAAACGAGTG 57.212 42.857 0.00 0.00 0.00 3.51
5831 5985 3.386486 ACATACGAAGCAAAACGAGTGA 58.614 40.909 0.00 0.00 0.00 3.41
5832 5986 3.805422 ACATACGAAGCAAAACGAGTGAA 59.195 39.130 0.00 0.00 0.00 3.18
5833 5987 4.451096 ACATACGAAGCAAAACGAGTGAAT 59.549 37.500 0.00 0.00 0.00 2.57
5834 5988 3.521524 ACGAAGCAAAACGAGTGAATC 57.478 42.857 0.00 0.00 0.00 2.52
5852 6006 8.635877 AGTGAATCGACACTCTAAAATATGTC 57.364 34.615 2.98 0.00 46.36 3.06
5853 6007 8.470805 AGTGAATCGACACTCTAAAATATGTCT 58.529 33.333 2.98 0.00 46.36 3.41
5854 6008 9.731819 GTGAATCGACACTCTAAAATATGTCTA 57.268 33.333 0.00 0.00 39.45 2.59
5886 6040 9.936329 ATCCCTATGTGGTAGTTCATTTAAAAT 57.064 29.630 0.00 0.00 0.00 1.82
5887 6041 9.762381 TCCCTATGTGGTAGTTCATTTAAAATT 57.238 29.630 0.00 0.00 0.00 1.82
5918 6072 9.855021 AAAAGACAAATATTTAGAAACGGATGG 57.145 29.630 0.00 0.00 0.00 3.51
5919 6073 8.801882 AAGACAAATATTTAGAAACGGATGGA 57.198 30.769 0.00 0.00 0.00 3.41
5920 6074 8.438676 AGACAAATATTTAGAAACGGATGGAG 57.561 34.615 0.00 0.00 0.00 3.86
5921 6075 8.047310 AGACAAATATTTAGAAACGGATGGAGT 58.953 33.333 0.00 0.00 0.00 3.85
5922 6076 9.321562 GACAAATATTTAGAAACGGATGGAGTA 57.678 33.333 0.00 0.00 0.00 2.59
5923 6077 9.326413 ACAAATATTTAGAAACGGATGGAGTAG 57.674 33.333 0.00 0.00 0.00 2.57
5924 6078 7.964604 AATATTTAGAAACGGATGGAGTAGC 57.035 36.000 0.00 0.00 0.00 3.58
5925 6079 5.615925 ATTTAGAAACGGATGGAGTAGCT 57.384 39.130 0.00 0.00 0.00 3.32
5926 6080 6.726490 ATTTAGAAACGGATGGAGTAGCTA 57.274 37.500 0.00 0.00 0.00 3.32
5927 6081 5.769484 TTAGAAACGGATGGAGTAGCTAG 57.231 43.478 0.00 0.00 0.00 3.42
5928 6082 3.633418 AGAAACGGATGGAGTAGCTAGT 58.367 45.455 0.00 0.00 0.00 2.57
5929 6083 4.024670 AGAAACGGATGGAGTAGCTAGTT 58.975 43.478 1.78 0.00 0.00 2.24
5930 6084 3.802948 AACGGATGGAGTAGCTAGTTG 57.197 47.619 1.78 0.00 0.00 3.16
5931 6085 2.032620 ACGGATGGAGTAGCTAGTTGG 58.967 52.381 1.78 0.00 0.00 3.77
5932 6086 1.269831 CGGATGGAGTAGCTAGTTGGC 60.270 57.143 1.78 0.00 0.00 4.52
5933 6087 1.269831 GGATGGAGTAGCTAGTTGGCG 60.270 57.143 1.78 0.00 37.29 5.69
5934 6088 1.409427 GATGGAGTAGCTAGTTGGCGT 59.591 52.381 1.78 0.00 37.29 5.68
5935 6089 0.530744 TGGAGTAGCTAGTTGGCGTG 59.469 55.000 1.78 0.00 37.29 5.34
5936 6090 0.179108 GGAGTAGCTAGTTGGCGTGG 60.179 60.000 1.78 0.00 37.29 4.94
5937 6091 0.806492 GAGTAGCTAGTTGGCGTGGC 60.806 60.000 1.78 0.00 37.29 5.01
5948 6102 3.649986 GCGTGGCCATCCGTATGC 61.650 66.667 9.72 0.00 34.14 3.14
5949 6103 2.203001 CGTGGCCATCCGTATGCA 60.203 61.111 9.72 0.00 34.14 3.96
5950 6104 1.597854 CGTGGCCATCCGTATGCAT 60.598 57.895 9.72 3.79 34.14 3.96
5951 6105 1.844771 CGTGGCCATCCGTATGCATG 61.845 60.000 9.72 0.00 34.14 4.06
5952 6106 0.819259 GTGGCCATCCGTATGCATGT 60.819 55.000 9.72 0.00 34.14 3.21
5953 6107 0.818852 TGGCCATCCGTATGCATGTG 60.819 55.000 10.16 0.76 34.14 3.21
5954 6108 1.518056 GGCCATCCGTATGCATGTGG 61.518 60.000 10.16 11.08 0.00 4.17
5955 6109 1.951510 CCATCCGTATGCATGTGGC 59.048 57.895 10.16 0.00 45.13 5.01
5965 6119 3.924238 GCATGTGGCGGTAAGATTG 57.076 52.632 0.00 0.00 0.00 2.67
5966 6120 0.381801 GCATGTGGCGGTAAGATTGG 59.618 55.000 0.00 0.00 0.00 3.16
5967 6121 2.016604 GCATGTGGCGGTAAGATTGGA 61.017 52.381 0.00 0.00 0.00 3.53
5968 6122 1.942657 CATGTGGCGGTAAGATTGGAG 59.057 52.381 0.00 0.00 0.00 3.86
5969 6123 0.251916 TGTGGCGGTAAGATTGGAGG 59.748 55.000 0.00 0.00 0.00 4.30
5970 6124 0.539986 GTGGCGGTAAGATTGGAGGA 59.460 55.000 0.00 0.00 0.00 3.71
5971 6125 0.830648 TGGCGGTAAGATTGGAGGAG 59.169 55.000 0.00 0.00 0.00 3.69
5972 6126 0.533085 GGCGGTAAGATTGGAGGAGC 60.533 60.000 0.00 0.00 0.00 4.70
5973 6127 0.178068 GCGGTAAGATTGGAGGAGCA 59.822 55.000 0.00 0.00 0.00 4.26
5974 6128 1.808133 GCGGTAAGATTGGAGGAGCAG 60.808 57.143 0.00 0.00 0.00 4.24
5975 6129 1.482593 CGGTAAGATTGGAGGAGCAGT 59.517 52.381 0.00 0.00 0.00 4.40
5976 6130 2.693591 CGGTAAGATTGGAGGAGCAGTA 59.306 50.000 0.00 0.00 0.00 2.74
5977 6131 3.132289 CGGTAAGATTGGAGGAGCAGTAA 59.868 47.826 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.878778 CTCCACCATCTCTGTTTTAGGG 58.121 50.000 0.00 0.00 0.00 3.53
102 104 4.883083 TGATAACTGATAAGGGCGCTAAG 58.117 43.478 7.64 2.51 0.00 2.18
119 121 5.973899 TGTTTATTGCTTGGTGCTGATAA 57.026 34.783 0.00 0.00 43.37 1.75
120 122 5.163530 CCATGTTTATTGCTTGGTGCTGATA 60.164 40.000 0.00 0.00 43.37 2.15
121 123 4.382254 CCATGTTTATTGCTTGGTGCTGAT 60.382 41.667 0.00 0.00 43.37 2.90
122 124 3.056678 CCATGTTTATTGCTTGGTGCTGA 60.057 43.478 0.00 0.00 43.37 4.26
123 125 3.255725 CCATGTTTATTGCTTGGTGCTG 58.744 45.455 0.00 0.00 43.37 4.41
124 126 2.354003 GCCATGTTTATTGCTTGGTGCT 60.354 45.455 0.00 0.00 43.37 4.40
125 127 2.001872 GCCATGTTTATTGCTTGGTGC 58.998 47.619 0.00 0.00 43.25 5.01
134 136 9.699703 AAAACATAAAACGTAGCCATGTTTATT 57.300 25.926 21.00 10.87 44.69 1.40
164 166 7.483059 GCTCAAGCAAACTATGAGAAATAACAC 59.517 37.037 6.21 0.00 42.48 3.32
250 252 6.376177 CCACTGGTCTTCCGTTATTAAAAAC 58.624 40.000 0.00 0.00 36.30 2.43
283 285 0.809636 CGTATGATGCAACGCCCAGA 60.810 55.000 0.00 0.00 31.66 3.86
313 315 4.803088 TGTAAGTTGCAAGCACAATTTCAC 59.197 37.500 0.00 0.00 32.51 3.18
319 321 5.559991 CGATAAGTGTAAGTTGCAAGCACAA 60.560 40.000 18.92 10.93 32.99 3.33
320 322 4.084066 CGATAAGTGTAAGTTGCAAGCACA 60.084 41.667 18.92 12.54 32.99 4.57
334 336 3.068165 TCGATGCATCTTCCGATAAGTGT 59.932 43.478 23.73 0.00 0.00 3.55
336 338 4.322080 TTCGATGCATCTTCCGATAAGT 57.678 40.909 23.73 0.00 0.00 2.24
400 402 1.622312 GACTAGGCCGGGGGTAATTAG 59.378 57.143 2.18 0.00 0.00 1.73
471 473 4.453136 TGCGAATTAGGTTTACAGGACAAC 59.547 41.667 0.00 0.00 0.00 3.32
474 476 3.063588 GCTGCGAATTAGGTTTACAGGAC 59.936 47.826 0.00 0.00 0.00 3.85
491 493 0.167908 TATGGCGAAACAAAGCTGCG 59.832 50.000 0.00 0.00 0.00 5.18
525 527 8.532977 TTTGTATACTTAGGTACCAACGAAAC 57.467 34.615 15.94 4.58 0.00 2.78
545 547 9.952030 TCATTTCCTTAGTGATACACATTTGTA 57.048 29.630 4.75 0.00 42.53 2.41
546 548 8.862325 TCATTTCCTTAGTGATACACATTTGT 57.138 30.769 4.75 0.00 40.02 2.83
669 680 1.633432 ACGATGGGGGAAGTGATGAAA 59.367 47.619 0.00 0.00 0.00 2.69
687 698 7.915508 TCATAGCAACTTTCATATACCAAACG 58.084 34.615 0.00 0.00 0.00 3.60
791 802 6.878317 TGAGGATATCTTGCCCGAAATATAG 58.122 40.000 2.05 0.00 0.00 1.31
891 902 7.414436 TCAATACTTGCAGAACAAACAACTAC 58.586 34.615 0.00 0.00 37.96 2.73
892 903 7.561021 TCAATACTTGCAGAACAAACAACTA 57.439 32.000 0.00 0.00 37.96 2.24
893 904 6.449635 TCAATACTTGCAGAACAAACAACT 57.550 33.333 0.00 0.00 37.96 3.16
924 938 7.501559 CCTTCTGACCTGAATTCATTACATCAT 59.498 37.037 8.96 0.00 0.00 2.45
1111 1125 1.699656 CGGCAGCTCAAGATGGAACG 61.700 60.000 0.00 0.00 31.02 3.95
1423 1437 2.962089 CAACTGTGCTGTTTGCCAC 58.038 52.632 0.00 0.00 42.00 5.01
1578 1592 6.811665 TCACTGTGTGACAAGTATATAACTGC 59.188 38.462 7.79 0.00 37.67 4.40
1586 1600 6.544928 TGGATATCACTGTGTGACAAGTAT 57.455 37.500 7.79 0.00 45.65 2.12
1618 1632 9.461312 AAACAGTGAAGCATCCATAATAACTTA 57.539 29.630 0.00 0.00 0.00 2.24
1966 2021 1.209261 TCTTTGTGGTGCTGACTCACA 59.791 47.619 0.00 0.00 39.31 3.58
2218 2273 1.063266 ACCATGTTTTCCACACCCTGT 60.063 47.619 0.00 0.00 38.61 4.00
2380 2436 0.704076 TCAGGTAGGGCATGGCTTTT 59.296 50.000 19.78 7.87 0.00 2.27
2416 2472 4.809193 AGATGGATCAGTAGCTGAGGTAA 58.191 43.478 0.00 0.00 44.08 2.85
2497 2553 3.160679 TCTGTGTGATGTCTCTCCTCA 57.839 47.619 0.00 0.00 0.00 3.86
2508 2564 6.299922 TCTATAGGAACGAGATCTGTGTGAT 58.700 40.000 0.00 0.00 38.27 3.06
2522 2578 5.386924 TGAGCCTCCTTACTCTATAGGAAC 58.613 45.833 0.00 0.00 39.95 3.62
2551 2607 0.036164 ACGTCATGCTTAGCCAACCA 59.964 50.000 0.29 0.00 0.00 3.67
3252 3310 6.817765 TCCACATGAAACAGAATAGGAAAC 57.182 37.500 0.00 0.00 0.00 2.78
3263 3321 6.897706 TTCAATGAGATTCCACATGAAACA 57.102 33.333 0.00 0.00 36.33 2.83
3306 3364 6.877611 AACACTTCCACCATTTTAGTACAG 57.122 37.500 0.00 0.00 0.00 2.74
3367 3425 6.006275 AGGGATAAAGAATAAGCAGCAAGA 57.994 37.500 0.00 0.00 0.00 3.02
3473 3531 8.958060 ACCTATATCCTAAGCTGAGATAACAA 57.042 34.615 0.00 0.00 0.00 2.83
3504 3562 7.809546 TGTCCTGTAGTCTATACTCTTCATG 57.190 40.000 0.00 0.00 37.15 3.07
3540 3600 7.875554 TGCGATTTACCTGCAATATTCATAGTA 59.124 33.333 0.00 0.00 35.33 1.82
3559 3619 3.764885 GCAATCCTGTACTTGCGATTT 57.235 42.857 2.26 0.00 38.47 2.17
4343 4409 5.612725 TTTTTCCCATGGCCTCAAATATC 57.387 39.130 6.09 0.00 0.00 1.63
4368 4434 8.301002 ACTAGAGAACATACAGTTTCAGAGTTC 58.699 37.037 0.00 0.00 41.51 3.01
4370 4436 7.768807 ACTAGAGAACATACAGTTTCAGAGT 57.231 36.000 0.00 0.00 41.51 3.24
4399 4465 7.255451 CCTGGTCAAGTTTATTGCTTGTTTCTA 60.255 37.037 5.18 0.00 42.67 2.10
4502 4568 0.400213 TCCTTGACGGTTCCAGCATT 59.600 50.000 0.00 0.00 0.00 3.56
4503 4569 0.620556 ATCCTTGACGGTTCCAGCAT 59.379 50.000 0.00 0.00 0.00 3.79
4508 4574 4.258543 TGATGTAAATCCTTGACGGTTCC 58.741 43.478 0.00 0.00 0.00 3.62
4513 4579 3.270027 TGCCTGATGTAAATCCTTGACG 58.730 45.455 0.00 0.00 0.00 4.35
4526 4592 2.036958 TTCCGTGGTAATGCCTGATG 57.963 50.000 0.00 0.00 38.35 3.07
4553 4621 7.147567 TGGTCATGATTTGGTCAGCTATAGTAA 60.148 37.037 0.00 0.00 40.92 2.24
4634 4702 6.970043 TGACAAAACAGATAAAAACAAGGTCG 59.030 34.615 0.00 0.00 0.00 4.79
4662 4730 6.857848 TCTCATATATCTGTCCAAGAGACCT 58.142 40.000 0.00 0.00 45.68 3.85
4669 4737 9.521841 CTACCTAGTTCTCATATATCTGTCCAA 57.478 37.037 0.00 0.00 0.00 3.53
4695 4763 6.533012 GTGAACGGAGGGAGTACTTTTATTAC 59.467 42.308 0.00 0.00 0.00 1.89
4696 4764 6.438425 AGTGAACGGAGGGAGTACTTTTATTA 59.562 38.462 0.00 0.00 0.00 0.98
4697 4765 5.247792 AGTGAACGGAGGGAGTACTTTTATT 59.752 40.000 0.00 0.00 0.00 1.40
4698 4766 4.776308 AGTGAACGGAGGGAGTACTTTTAT 59.224 41.667 0.00 0.00 0.00 1.40
4701 4769 2.606378 AGTGAACGGAGGGAGTACTTT 58.394 47.619 0.00 0.00 0.00 2.66
4702 4770 2.305858 AGTGAACGGAGGGAGTACTT 57.694 50.000 0.00 0.00 0.00 2.24
4703 4771 2.305858 AAGTGAACGGAGGGAGTACT 57.694 50.000 0.00 0.00 0.00 2.73
4704 4772 3.064931 CAAAAGTGAACGGAGGGAGTAC 58.935 50.000 0.00 0.00 0.00 2.73
4705 4773 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
4706 4774 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
4707 4775 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
4708 4776 3.388676 TCTTACAAAAGTGAACGGAGGGA 59.611 43.478 0.00 0.00 34.13 4.20
4709 4777 3.497262 GTCTTACAAAAGTGAACGGAGGG 59.503 47.826 0.00 0.00 34.13 4.30
4710 4778 3.497262 GGTCTTACAAAAGTGAACGGAGG 59.503 47.826 0.00 0.00 34.13 4.30
4711 4779 4.377897 AGGTCTTACAAAAGTGAACGGAG 58.622 43.478 0.00 0.00 34.13 4.63
4712 4780 4.411256 AGGTCTTACAAAAGTGAACGGA 57.589 40.909 0.00 0.00 34.13 4.69
4713 4781 5.494632 AAAGGTCTTACAAAAGTGAACGG 57.505 39.130 0.00 0.00 34.13 4.44
4714 4782 7.849515 GTCTAAAAGGTCTTACAAAAGTGAACG 59.150 37.037 0.00 0.00 34.13 3.95
4715 4783 8.671028 TGTCTAAAAGGTCTTACAAAAGTGAAC 58.329 33.333 0.00 0.00 34.13 3.18
4716 4784 8.795842 TGTCTAAAAGGTCTTACAAAAGTGAA 57.204 30.769 0.00 0.00 34.13 3.18
4717 4785 8.974060 ATGTCTAAAAGGTCTTACAAAAGTGA 57.026 30.769 0.00 0.00 34.13 3.41
4728 4796 9.384764 GCTGTCTTATAAATGTCTAAAAGGTCT 57.615 33.333 0.00 0.00 0.00 3.85
4729 4797 9.162764 TGCTGTCTTATAAATGTCTAAAAGGTC 57.837 33.333 0.00 0.00 0.00 3.85
4730 4798 8.947115 GTGCTGTCTTATAAATGTCTAAAAGGT 58.053 33.333 0.00 0.00 0.00 3.50
4731 4799 8.398665 GGTGCTGTCTTATAAATGTCTAAAAGG 58.601 37.037 0.00 0.00 0.00 3.11
4732 4800 9.167311 AGGTGCTGTCTTATAAATGTCTAAAAG 57.833 33.333 0.00 0.00 0.00 2.27
4737 4805 8.947115 GTTTTAGGTGCTGTCTTATAAATGTCT 58.053 33.333 0.00 0.00 0.00 3.41
4738 4806 8.726988 TGTTTTAGGTGCTGTCTTATAAATGTC 58.273 33.333 0.00 0.00 0.00 3.06
4739 4807 8.630054 TGTTTTAGGTGCTGTCTTATAAATGT 57.370 30.769 0.00 0.00 0.00 2.71
4740 4808 8.730680 ACTGTTTTAGGTGCTGTCTTATAAATG 58.269 33.333 0.00 0.00 0.00 2.32
4741 4809 8.863872 ACTGTTTTAGGTGCTGTCTTATAAAT 57.136 30.769 0.00 0.00 0.00 1.40
4742 4810 8.685838 AACTGTTTTAGGTGCTGTCTTATAAA 57.314 30.769 0.00 0.00 0.00 1.40
4743 4811 7.934665 TGAACTGTTTTAGGTGCTGTCTTATAA 59.065 33.333 0.00 0.00 0.00 0.98
4744 4812 7.446769 TGAACTGTTTTAGGTGCTGTCTTATA 58.553 34.615 0.00 0.00 0.00 0.98
4745 4813 6.296026 TGAACTGTTTTAGGTGCTGTCTTAT 58.704 36.000 0.00 0.00 0.00 1.73
4746 4814 5.676552 TGAACTGTTTTAGGTGCTGTCTTA 58.323 37.500 0.00 0.00 0.00 2.10
4747 4815 4.523083 TGAACTGTTTTAGGTGCTGTCTT 58.477 39.130 0.00 0.00 0.00 3.01
4748 4816 4.150897 TGAACTGTTTTAGGTGCTGTCT 57.849 40.909 0.00 0.00 0.00 3.41
4749 4817 4.893424 TTGAACTGTTTTAGGTGCTGTC 57.107 40.909 0.00 0.00 0.00 3.51
4750 4818 5.852282 AATTGAACTGTTTTAGGTGCTGT 57.148 34.783 0.00 0.00 0.00 4.40
4751 4819 6.272318 TGAAATTGAACTGTTTTAGGTGCTG 58.728 36.000 0.00 0.00 0.00 4.41
4752 4820 6.463995 TGAAATTGAACTGTTTTAGGTGCT 57.536 33.333 0.00 0.00 0.00 4.40
4753 4821 5.175673 GCTGAAATTGAACTGTTTTAGGTGC 59.824 40.000 0.00 0.00 0.00 5.01
4754 4822 6.418819 CAGCTGAAATTGAACTGTTTTAGGTG 59.581 38.462 8.42 7.20 40.48 4.00
4755 4823 6.096846 ACAGCTGAAATTGAACTGTTTTAGGT 59.903 34.615 23.35 0.00 38.38 3.08
4756 4824 6.507023 ACAGCTGAAATTGAACTGTTTTAGG 58.493 36.000 23.35 0.00 38.38 2.69
4757 4825 6.638468 GGACAGCTGAAATTGAACTGTTTTAG 59.362 38.462 23.35 0.00 41.45 1.85
4758 4826 6.321181 AGGACAGCTGAAATTGAACTGTTTTA 59.679 34.615 23.35 0.00 41.45 1.52
4759 4827 5.127682 AGGACAGCTGAAATTGAACTGTTTT 59.872 36.000 23.35 0.00 41.45 2.43
4760 4828 4.646492 AGGACAGCTGAAATTGAACTGTTT 59.354 37.500 23.35 0.00 41.45 2.83
4761 4829 4.210331 AGGACAGCTGAAATTGAACTGTT 58.790 39.130 23.35 0.00 41.45 3.16
4762 4830 3.825328 AGGACAGCTGAAATTGAACTGT 58.175 40.909 23.35 0.00 43.93 3.55
4763 4831 5.947228 TTAGGACAGCTGAAATTGAACTG 57.053 39.130 23.35 0.00 0.00 3.16
4764 4832 5.049405 CGTTTAGGACAGCTGAAATTGAACT 60.049 40.000 23.35 8.35 0.00 3.01
4765 4833 5.049680 TCGTTTAGGACAGCTGAAATTGAAC 60.050 40.000 23.35 15.30 0.00 3.18
4766 4834 5.049680 GTCGTTTAGGACAGCTGAAATTGAA 60.050 40.000 23.35 4.96 36.91 2.69
4767 4835 4.451096 GTCGTTTAGGACAGCTGAAATTGA 59.549 41.667 23.35 9.59 36.91 2.57
4768 4836 4.452455 AGTCGTTTAGGACAGCTGAAATTG 59.548 41.667 23.35 7.48 39.42 2.32
4769 4837 4.642429 AGTCGTTTAGGACAGCTGAAATT 58.358 39.130 23.35 0.00 39.42 1.82
4770 4838 4.273148 AGTCGTTTAGGACAGCTGAAAT 57.727 40.909 23.35 7.64 39.42 2.17
4771 4839 3.746045 AGTCGTTTAGGACAGCTGAAA 57.254 42.857 23.35 7.52 39.42 2.69
4772 4840 3.746045 AAGTCGTTTAGGACAGCTGAA 57.254 42.857 23.35 0.04 39.42 3.02
4773 4841 3.570975 TGTAAGTCGTTTAGGACAGCTGA 59.429 43.478 23.35 0.00 39.42 4.26
4774 4842 3.909430 TGTAAGTCGTTTAGGACAGCTG 58.091 45.455 13.48 13.48 39.42 4.24
4775 4843 4.595762 TTGTAAGTCGTTTAGGACAGCT 57.404 40.909 5.50 0.00 39.42 4.24
4776 4844 5.235831 ACTTTTGTAAGTCGTTTAGGACAGC 59.764 40.000 5.50 0.00 40.60 4.40
4777 4845 6.477688 TCACTTTTGTAAGTCGTTTAGGACAG 59.522 38.462 5.50 0.00 42.67 3.51
4778 4846 6.339730 TCACTTTTGTAAGTCGTTTAGGACA 58.660 36.000 5.50 0.00 42.67 4.02
4779 4847 6.833342 TCACTTTTGTAAGTCGTTTAGGAC 57.167 37.500 0.00 0.00 42.67 3.85
4780 4848 6.817641 TGTTCACTTTTGTAAGTCGTTTAGGA 59.182 34.615 0.00 0.00 42.67 2.94
4781 4849 7.007313 TGTTCACTTTTGTAAGTCGTTTAGG 57.993 36.000 0.00 0.00 42.67 2.69
4782 4850 7.902032 TCTGTTCACTTTTGTAAGTCGTTTAG 58.098 34.615 0.00 0.00 42.67 1.85
4783 4851 7.010738 CCTCTGTTCACTTTTGTAAGTCGTTTA 59.989 37.037 0.00 0.00 42.67 2.01
4784 4852 6.183360 CCTCTGTTCACTTTTGTAAGTCGTTT 60.183 38.462 0.00 0.00 42.67 3.60
4785 4853 5.293569 CCTCTGTTCACTTTTGTAAGTCGTT 59.706 40.000 0.00 0.00 42.67 3.85
4786 4854 4.809426 CCTCTGTTCACTTTTGTAAGTCGT 59.191 41.667 0.00 0.00 42.67 4.34
4787 4855 4.211374 CCCTCTGTTCACTTTTGTAAGTCG 59.789 45.833 0.00 0.00 42.67 4.18
4788 4856 5.365619 TCCCTCTGTTCACTTTTGTAAGTC 58.634 41.667 0.00 0.00 42.67 3.01
4789 4857 5.104485 ACTCCCTCTGTTCACTTTTGTAAGT 60.104 40.000 0.00 0.00 45.40 2.24
4790 4858 5.368989 ACTCCCTCTGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
4791 4859 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
4792 4860 6.681729 ATACTCCCTCTGTTCACTTTTGTA 57.318 37.500 0.00 0.00 0.00 2.41
4793 4861 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
4794 4862 7.979444 TTAATACTCCCTCTGTTCACTTTTG 57.021 36.000 0.00 0.00 0.00 2.44
4798 4866 9.440761 AGATAATTAATACTCCCTCTGTTCACT 57.559 33.333 0.00 0.00 0.00 3.41
4803 4871 9.213777 TGTCAAGATAATTAATACTCCCTCTGT 57.786 33.333 0.00 0.00 0.00 3.41
4857 4925 6.402766 GCATACGCTTAAAATCAACACTACCA 60.403 38.462 0.00 0.00 34.30 3.25
4858 4926 5.963586 GCATACGCTTAAAATCAACACTACC 59.036 40.000 0.00 0.00 34.30 3.18
4926 5008 5.807909 TGAATGAATGGAGTCAGAATGTGA 58.192 37.500 0.00 0.00 37.40 3.58
4927 5009 6.095021 ACATGAATGAATGGAGTCAGAATGTG 59.905 38.462 0.00 0.00 32.16 3.21
4928 5010 6.185511 ACATGAATGAATGGAGTCAGAATGT 58.814 36.000 0.00 0.00 32.17 2.71
4929 5011 6.694877 ACATGAATGAATGGAGTCAGAATG 57.305 37.500 0.00 0.00 31.71 2.67
4941 5024 3.827876 TCTGTGCACCAACATGAATGAAT 59.172 39.130 15.69 0.00 0.00 2.57
4959 5048 1.064906 CATCAAGACTGGGCCATCTGT 60.065 52.381 6.72 0.21 0.00 3.41
5106 5203 2.904866 TGGAGCGCGGCTGTTTTT 60.905 55.556 8.83 0.00 39.88 1.94
5116 5213 2.740055 CTGGTGACACTGGAGCGC 60.740 66.667 0.00 0.00 35.60 5.92
5117 5214 2.740055 GCTGGTGACACTGGAGCG 60.740 66.667 5.39 0.00 35.60 5.03
5126 5223 2.945668 GGAACATCATAAGGCTGGTGAC 59.054 50.000 4.44 0.00 31.49 3.67
5135 5232 2.877168 GCTGCTCCAGGAACATCATAAG 59.123 50.000 0.00 0.00 31.21 1.73
5137 5234 1.839354 TGCTGCTCCAGGAACATCATA 59.161 47.619 0.00 0.00 31.21 2.15
5138 5235 0.622136 TGCTGCTCCAGGAACATCAT 59.378 50.000 0.00 0.00 31.21 2.45
5139 5236 0.401356 TTGCTGCTCCAGGAACATCA 59.599 50.000 0.00 0.00 36.92 3.07
5140 5237 1.404391 CATTGCTGCTCCAGGAACATC 59.596 52.381 0.00 0.00 43.91 3.06
5180 5297 4.882671 ATCATGATGCTACAAACGGTTC 57.117 40.909 7.59 0.00 0.00 3.62
5181 5298 4.699735 TGAATCATGATGCTACAAACGGTT 59.300 37.500 14.96 0.00 0.00 4.44
5218 5340 0.730494 CCGGGTCTCGACGTTTACAC 60.730 60.000 0.00 0.00 42.43 2.90
5241 5363 1.153823 CATCACGACGGGTCTGGAC 60.154 63.158 0.00 0.00 0.00 4.02
5242 5364 3.001902 GCATCACGACGGGTCTGGA 62.002 63.158 0.00 0.00 0.00 3.86
5243 5365 2.509336 GCATCACGACGGGTCTGG 60.509 66.667 0.00 0.00 0.00 3.86
5288 5413 1.889105 GCCATGATCGACCATGCGT 60.889 57.895 14.79 0.00 41.83 5.24
5289 5414 2.941333 GCCATGATCGACCATGCG 59.059 61.111 14.79 8.88 41.83 4.73
5290 5415 2.941333 CGCCATGATCGACCATGC 59.059 61.111 14.79 8.97 41.83 4.06
5292 5417 2.662857 CGCGCCATGATCGACCAT 60.663 61.111 0.00 0.00 0.00 3.55
5293 5418 4.889856 CCGCGCCATGATCGACCA 62.890 66.667 0.00 0.00 0.00 4.02
5330 5455 1.084370 CGGTTCGGTTCTCATCTGGC 61.084 60.000 0.00 0.00 0.00 4.85
5341 5466 2.486918 CTAAAGGTCAAACGGTTCGGT 58.513 47.619 0.00 0.00 0.00 4.69
5342 5467 1.802365 CCTAAAGGTCAAACGGTTCGG 59.198 52.381 0.00 0.00 0.00 4.30
5389 5522 4.595538 TGACGGACGCACCCACAC 62.596 66.667 0.00 0.00 34.64 3.82
5467 5606 2.160205 GGAGAAAAGTGTTGCCCTACC 58.840 52.381 0.00 0.00 0.00 3.18
5487 5626 1.100510 TTATCCGTCCGAGACCACAG 58.899 55.000 0.00 0.00 0.00 3.66
5508 5647 3.031126 CGTATTTGCATGCAATCTGACG 58.969 45.455 32.27 29.18 35.70 4.35
5548 5687 1.037579 AGATGAGATCCACCGTCGCA 61.038 55.000 0.00 0.00 0.00 5.10
5549 5688 0.318275 GAGATGAGATCCACCGTCGC 60.318 60.000 0.00 0.00 0.00 5.19
5550 5689 1.025041 TGAGATGAGATCCACCGTCG 58.975 55.000 0.00 0.00 0.00 5.12
5551 5690 2.028130 AGTGAGATGAGATCCACCGTC 58.972 52.381 0.00 0.00 33.63 4.79
5584 5723 3.947910 AACAGCACAATCATTTGGAGG 57.052 42.857 0.00 0.00 37.15 4.30
5585 5724 4.672542 CGGTAACAGCACAATCATTTGGAG 60.673 45.833 0.00 0.00 37.15 3.86
5586 5725 3.190327 CGGTAACAGCACAATCATTTGGA 59.810 43.478 0.00 0.00 37.15 3.53
5613 5752 4.307908 GTCGGCACCAACACGCAC 62.308 66.667 0.00 0.00 0.00 5.34
5616 5755 3.041940 GAGGTCGGCACCAACACG 61.042 66.667 8.48 0.00 46.68 4.49
5618 5757 2.110213 GTGAGGTCGGCACCAACA 59.890 61.111 8.48 5.72 46.68 3.33
5624 5763 3.241530 AAGCAGGTGAGGTCGGCA 61.242 61.111 0.00 0.00 0.00 5.69
5625 5764 2.743928 CAAGCAGGTGAGGTCGGC 60.744 66.667 0.00 0.00 0.00 5.54
5626 5765 2.743928 GCAAGCAGGTGAGGTCGG 60.744 66.667 0.00 0.00 0.00 4.79
5668 5807 2.040544 CAAGCAAGGCCCTACACCG 61.041 63.158 0.00 0.00 0.00 4.94
5669 5808 1.678970 CCAAGCAAGGCCCTACACC 60.679 63.158 0.00 0.00 0.00 4.16
5701 5854 4.487948 CGTGAATTCCAGCAATGACAAAT 58.512 39.130 2.27 0.00 0.00 2.32
5710 5863 0.948623 CGACACCGTGAATTCCAGCA 60.949 55.000 5.28 0.00 0.00 4.41
5721 5874 3.069289 GTCCCTTATTTTTCGACACCGT 58.931 45.455 0.00 0.00 37.05 4.83
5734 5887 2.290641 TGTGGTTCATTGCGTCCCTTAT 60.291 45.455 0.00 0.00 0.00 1.73
5735 5888 1.072489 TGTGGTTCATTGCGTCCCTTA 59.928 47.619 0.00 0.00 0.00 2.69
5745 5899 4.383118 CGGAGGAAGTAGATGTGGTTCATT 60.383 45.833 0.00 0.00 36.83 2.57
5750 5904 2.233305 ACGGAGGAAGTAGATGTGGT 57.767 50.000 0.00 0.00 0.00 4.16
5760 5914 8.494016 AGACAAATATTTAGAAACGGAGGAAG 57.506 34.615 0.00 0.00 0.00 3.46
5761 5915 8.857694 AAGACAAATATTTAGAAACGGAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
5762 5916 8.857694 AAAGACAAATATTTAGAAACGGAGGA 57.142 30.769 0.00 0.00 0.00 3.71
5763 5917 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
5781 5935 9.607988 TCACTTGTTGTAATCTTTAGAAAGACA 57.392 29.630 6.85 0.00 46.80 3.41
5782 5936 9.865484 GTCACTTGTTGTAATCTTTAGAAAGAC 57.135 33.333 6.85 0.00 46.80 3.01
5790 5944 8.922676 CGTATGTAGTCACTTGTTGTAATCTTT 58.077 33.333 0.00 0.00 0.00 2.52
5791 5945 8.301720 TCGTATGTAGTCACTTGTTGTAATCTT 58.698 33.333 0.00 0.00 0.00 2.40
5792 5946 7.823665 TCGTATGTAGTCACTTGTTGTAATCT 58.176 34.615 0.00 0.00 0.00 2.40
5793 5947 8.456904 TTCGTATGTAGTCACTTGTTGTAATC 57.543 34.615 0.00 0.00 0.00 1.75
5794 5948 7.063074 GCTTCGTATGTAGTCACTTGTTGTAAT 59.937 37.037 0.00 0.00 0.00 1.89
5795 5949 6.364165 GCTTCGTATGTAGTCACTTGTTGTAA 59.636 38.462 0.00 0.00 0.00 2.41
5796 5950 5.860182 GCTTCGTATGTAGTCACTTGTTGTA 59.140 40.000 0.00 0.00 0.00 2.41
5797 5951 4.684703 GCTTCGTATGTAGTCACTTGTTGT 59.315 41.667 0.00 0.00 0.00 3.32
5798 5952 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
5799 5953 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
5800 5954 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
5801 5955 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
5802 5956 5.107607 CGTTTTGCTTCGTATGTAGTCACTT 60.108 40.000 0.00 0.00 0.00 3.16
5803 5957 4.384846 CGTTTTGCTTCGTATGTAGTCACT 59.615 41.667 0.00 0.00 0.00 3.41
5804 5958 4.383649 TCGTTTTGCTTCGTATGTAGTCAC 59.616 41.667 0.00 0.00 0.00 3.67
5805 5959 4.548494 TCGTTTTGCTTCGTATGTAGTCA 58.452 39.130 0.00 0.00 0.00 3.41
5806 5960 4.620184 ACTCGTTTTGCTTCGTATGTAGTC 59.380 41.667 0.00 0.00 0.00 2.59
5807 5961 4.384846 CACTCGTTTTGCTTCGTATGTAGT 59.615 41.667 0.00 0.00 0.00 2.73
5808 5962 4.619760 TCACTCGTTTTGCTTCGTATGTAG 59.380 41.667 0.00 0.00 0.00 2.74
5809 5963 4.548494 TCACTCGTTTTGCTTCGTATGTA 58.452 39.130 0.00 0.00 0.00 2.29
5810 5964 3.386486 TCACTCGTTTTGCTTCGTATGT 58.614 40.909 0.00 0.00 0.00 2.29
5811 5965 4.383774 TTCACTCGTTTTGCTTCGTATG 57.616 40.909 0.00 0.00 0.00 2.39
5812 5966 4.201589 CGATTCACTCGTTTTGCTTCGTAT 60.202 41.667 0.00 0.00 42.56 3.06
5813 5967 3.120616 CGATTCACTCGTTTTGCTTCGTA 59.879 43.478 0.00 0.00 42.56 3.43
5814 5968 2.096909 CGATTCACTCGTTTTGCTTCGT 60.097 45.455 0.00 0.00 42.56 3.85
5815 5969 2.486128 CGATTCACTCGTTTTGCTTCG 58.514 47.619 0.00 0.00 42.56 3.79
5828 5982 8.635877 AGACATATTTTAGAGTGTCGATTCAC 57.364 34.615 0.00 0.00 44.20 3.18
5860 6014 9.936329 ATTTTAAATGAACTACCACATAGGGAT 57.064 29.630 0.00 0.00 43.89 3.85
5861 6015 9.762381 AATTTTAAATGAACTACCACATAGGGA 57.238 29.630 0.00 0.00 43.89 4.20
5892 6046 9.855021 CCATCCGTTTCTAAATATTTGTCTTTT 57.145 29.630 11.05 0.00 0.00 2.27
5893 6047 9.238368 TCCATCCGTTTCTAAATATTTGTCTTT 57.762 29.630 11.05 0.00 0.00 2.52
5894 6048 8.801882 TCCATCCGTTTCTAAATATTTGTCTT 57.198 30.769 11.05 0.00 0.00 3.01
5895 6049 8.047310 ACTCCATCCGTTTCTAAATATTTGTCT 58.953 33.333 11.05 0.00 0.00 3.41
5896 6050 8.209917 ACTCCATCCGTTTCTAAATATTTGTC 57.790 34.615 11.05 0.00 0.00 3.18
5897 6051 9.326413 CTACTCCATCCGTTTCTAAATATTTGT 57.674 33.333 11.05 0.00 0.00 2.83
5898 6052 8.283291 GCTACTCCATCCGTTTCTAAATATTTG 58.717 37.037 11.05 1.65 0.00 2.32
5899 6053 8.211629 AGCTACTCCATCCGTTTCTAAATATTT 58.788 33.333 5.89 5.89 0.00 1.40
5900 6054 7.736893 AGCTACTCCATCCGTTTCTAAATATT 58.263 34.615 0.00 0.00 0.00 1.28
5901 6055 7.304497 AGCTACTCCATCCGTTTCTAAATAT 57.696 36.000 0.00 0.00 0.00 1.28
5902 6056 6.726490 AGCTACTCCATCCGTTTCTAAATA 57.274 37.500 0.00 0.00 0.00 1.40
5903 6057 5.615925 AGCTACTCCATCCGTTTCTAAAT 57.384 39.130 0.00 0.00 0.00 1.40
5904 6058 5.655532 ACTAGCTACTCCATCCGTTTCTAAA 59.344 40.000 0.00 0.00 0.00 1.85
5905 6059 5.198965 ACTAGCTACTCCATCCGTTTCTAA 58.801 41.667 0.00 0.00 0.00 2.10
5906 6060 4.789807 ACTAGCTACTCCATCCGTTTCTA 58.210 43.478 0.00 0.00 0.00 2.10
5907 6061 3.633418 ACTAGCTACTCCATCCGTTTCT 58.367 45.455 0.00 0.00 0.00 2.52
5908 6062 4.113354 CAACTAGCTACTCCATCCGTTTC 58.887 47.826 0.00 0.00 0.00 2.78
5909 6063 3.118738 CCAACTAGCTACTCCATCCGTTT 60.119 47.826 0.00 0.00 0.00 3.60
5910 6064 2.431057 CCAACTAGCTACTCCATCCGTT 59.569 50.000 0.00 0.00 0.00 4.44
5911 6065 2.032620 CCAACTAGCTACTCCATCCGT 58.967 52.381 0.00 0.00 0.00 4.69
5912 6066 1.269831 GCCAACTAGCTACTCCATCCG 60.270 57.143 0.00 0.00 0.00 4.18
5913 6067 1.269831 CGCCAACTAGCTACTCCATCC 60.270 57.143 0.00 0.00 0.00 3.51
5914 6068 1.409427 ACGCCAACTAGCTACTCCATC 59.591 52.381 0.00 0.00 0.00 3.51
5915 6069 1.137086 CACGCCAACTAGCTACTCCAT 59.863 52.381 0.00 0.00 0.00 3.41
5916 6070 0.530744 CACGCCAACTAGCTACTCCA 59.469 55.000 0.00 0.00 0.00 3.86
5917 6071 0.179108 CCACGCCAACTAGCTACTCC 60.179 60.000 0.00 0.00 0.00 3.85
5918 6072 0.806492 GCCACGCCAACTAGCTACTC 60.806 60.000 0.00 0.00 0.00 2.59
5919 6073 1.218316 GCCACGCCAACTAGCTACT 59.782 57.895 0.00 0.00 0.00 2.57
5920 6074 3.795638 GCCACGCCAACTAGCTAC 58.204 61.111 0.00 0.00 0.00 3.58
5931 6085 3.649986 GCATACGGATGGCCACGC 61.650 66.667 8.16 2.41 33.26 5.34
5932 6086 1.597854 ATGCATACGGATGGCCACG 60.598 57.895 8.16 11.68 33.26 4.94
5933 6087 0.819259 ACATGCATACGGATGGCCAC 60.819 55.000 8.16 1.35 44.75 5.01
5934 6088 0.818852 CACATGCATACGGATGGCCA 60.819 55.000 8.56 8.56 44.75 5.36
5935 6089 1.518056 CCACATGCATACGGATGGCC 61.518 60.000 10.28 0.00 44.75 5.36
5936 6090 1.951510 CCACATGCATACGGATGGC 59.048 57.895 10.28 2.30 44.75 4.40
5937 6091 1.844771 CGCCACATGCATACGGATGG 61.845 60.000 10.28 11.75 44.75 3.51
5938 6092 1.570967 CGCCACATGCATACGGATG 59.429 57.895 15.97 2.22 45.84 3.51
5939 6093 1.597854 CCGCCACATGCATACGGAT 60.598 57.895 19.30 0.00 46.71 4.18
5940 6094 1.677637 TACCGCCACATGCATACGGA 61.678 55.000 26.65 13.49 46.71 4.69
5942 6096 0.581529 CTTACCGCCACATGCATACG 59.418 55.000 0.00 0.98 41.33 3.06
5943 6097 1.948104 TCTTACCGCCACATGCATAC 58.052 50.000 0.00 0.00 41.33 2.39
5944 6098 2.877786 CAATCTTACCGCCACATGCATA 59.122 45.455 0.00 0.00 41.33 3.14
5945 6099 1.677576 CAATCTTACCGCCACATGCAT 59.322 47.619 0.00 0.00 41.33 3.96
5946 6100 1.093972 CAATCTTACCGCCACATGCA 58.906 50.000 0.00 0.00 41.33 3.96
5947 6101 0.381801 CCAATCTTACCGCCACATGC 59.618 55.000 0.00 0.00 0.00 4.06
5948 6102 1.942657 CTCCAATCTTACCGCCACATG 59.057 52.381 0.00 0.00 0.00 3.21
5949 6103 1.134098 CCTCCAATCTTACCGCCACAT 60.134 52.381 0.00 0.00 0.00 3.21
5950 6104 0.251916 CCTCCAATCTTACCGCCACA 59.748 55.000 0.00 0.00 0.00 4.17
5951 6105 0.539986 TCCTCCAATCTTACCGCCAC 59.460 55.000 0.00 0.00 0.00 5.01
5952 6106 0.830648 CTCCTCCAATCTTACCGCCA 59.169 55.000 0.00 0.00 0.00 5.69
5953 6107 0.533085 GCTCCTCCAATCTTACCGCC 60.533 60.000 0.00 0.00 0.00 6.13
5954 6108 0.178068 TGCTCCTCCAATCTTACCGC 59.822 55.000 0.00 0.00 0.00 5.68
5955 6109 1.482593 ACTGCTCCTCCAATCTTACCG 59.517 52.381 0.00 0.00 0.00 4.02
5956 6110 4.755266 TTACTGCTCCTCCAATCTTACC 57.245 45.455 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.