Multiple sequence alignment - TraesCS5A01G375300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G375300 chr5A 100.000 4002 0 0 1 4002 573103443 573099442 0.000000e+00 7391.0
1 TraesCS5A01G375300 chr5A 100.000 31 0 0 976 1006 280268735 280268705 1.550000e-04 58.4
2 TraesCS5A01G375300 chr5A 97.059 34 0 1 1522 1555 573101787 573101819 5.590000e-04 56.5
3 TraesCS5A01G375300 chr5A 97.059 34 0 1 1625 1657 573101889 573101922 5.590000e-04 56.5
4 TraesCS5A01G375300 chr5D 94.774 1684 66 10 1860 3528 454111602 454109926 0.000000e+00 2603.0
5 TraesCS5A01G375300 chr5D 85.736 1311 108 31 575 1858 454112901 454111643 0.000000e+00 1312.0
6 TraesCS5A01G375300 chr5D 90.065 614 45 7 1 607 454113529 454112925 0.000000e+00 782.0
7 TraesCS5A01G375300 chr5D 91.235 251 15 4 3563 3806 454109724 454109474 6.410000e-88 335.0
8 TraesCS5A01G375300 chr5D 97.059 34 0 1 1625 1657 454111918 454111951 5.590000e-04 56.5
9 TraesCS5A01G375300 chr5B 94.233 1630 63 18 1860 3463 554822824 554821200 0.000000e+00 2460.0
10 TraesCS5A01G375300 chr5B 85.876 1324 107 28 575 1858 554824173 554822890 0.000000e+00 1336.0
11 TraesCS5A01G375300 chr5B 89.902 614 47 7 1 607 554824802 554824197 0.000000e+00 776.0
12 TraesCS5A01G375300 chr5B 97.115 104 3 0 3562 3665 554821009 554820906 4.110000e-40 176.0
13 TraesCS5A01G375300 chr5B 97.059 34 0 1 1625 1657 554823174 554823207 5.590000e-04 56.5
14 TraesCS5A01G375300 chr6B 84.112 107 13 4 821 925 245003779 245003675 2.540000e-17 100.0
15 TraesCS5A01G375300 chr4A 100.000 31 0 0 976 1006 76704728 76704758 1.550000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G375300 chr5A 573099442 573103443 4001 True 7391 7391 100.0000 1 4002 1 chr5A.!!$R2 4001
1 TraesCS5A01G375300 chr5D 454109474 454113529 4055 True 1258 2603 90.4525 1 3806 4 chr5D.!!$R1 3805
2 TraesCS5A01G375300 chr5B 554820906 554824802 3896 True 1187 2460 91.7815 1 3665 4 chr5B.!!$R1 3664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 651 0.173255 GCGGGTCAATGGGTGAATTG 59.827 55.0 0.00 0.0 38.23 2.32 F
750 815 0.462759 CTAACACTAGCAGCAGGCCC 60.463 60.0 0.00 0.0 46.50 5.80 F
1414 1509 0.517316 AAATGCGAAGGCGAAGTCAC 59.483 50.0 0.00 0.0 44.10 3.67 F
1415 1510 0.602638 AATGCGAAGGCGAAGTCACA 60.603 50.0 0.00 0.0 44.10 3.58 F
1962 2141 0.948678 TAAAGCACGTCCACCTTTGC 59.051 50.0 9.15 0.0 35.08 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2141 0.868406 GAACAGAACCAGTTGAGCGG 59.132 55.000 0.00 0.0 0.0 5.52 R
2563 2742 1.001487 TGGCGATGTTTGTGCTTCTTG 60.001 47.619 0.00 0.0 0.0 3.02 R
2698 2895 1.335810 CCTCCCAAATCATGATGCACG 59.664 52.381 9.46 0.0 0.0 5.34 R
2848 3047 1.338579 GCCGCCAAATTTTCCATTCCA 60.339 47.619 0.00 0.0 0.0 3.53 R
3825 4222 0.034477 AGGGGGATAAACAACGGCTG 60.034 55.000 0.00 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.001268 CGTAGCTGATAGCATCACCGT 60.001 52.381 0.00 0.00 45.56 4.83
300 301 1.748493 GCCTTGACCACACAAGTTTCA 59.252 47.619 0.00 0.00 43.72 2.69
320 321 4.226384 TCATGCCCTCTAGCTTGAAGATA 58.774 43.478 0.00 0.00 42.11 1.98
331 332 7.773149 TCTAGCTTGAAGATACTCTGTTTACC 58.227 38.462 0.00 0.00 0.00 2.85
367 368 7.874528 GCCTGCCAAAGCTCATTTAATAATTAT 59.125 33.333 0.00 0.00 40.80 1.28
402 403 0.643820 GTCGCTCCATAAACGTTCGG 59.356 55.000 0.00 2.89 0.00 4.30
443 444 7.060633 GTGCTAACAAAATCCATTTTACTGTCG 59.939 37.037 0.00 0.00 37.86 4.35
444 445 6.033513 GCTAACAAAATCCATTTTACTGTCGC 59.966 38.462 0.00 0.00 37.86 5.19
445 446 4.805219 ACAAAATCCATTTTACTGTCGCC 58.195 39.130 0.00 0.00 37.86 5.54
446 447 4.173256 CAAAATCCATTTTACTGTCGCCC 58.827 43.478 0.00 0.00 37.86 6.13
478 484 1.271840 AATCGGCCCTTGCTGGTAGA 61.272 55.000 0.00 0.00 44.42 2.59
487 493 2.288273 CCTTGCTGGTAGATAGCGGTAC 60.288 54.545 0.00 0.00 44.01 3.34
492 498 3.256136 GCTGGTAGATAGCGGTACAGATT 59.744 47.826 11.93 0.00 32.84 2.40
494 500 3.005472 TGGTAGATAGCGGTACAGATTGC 59.995 47.826 0.00 0.00 0.00 3.56
497 503 5.105877 GGTAGATAGCGGTACAGATTGCATA 60.106 44.000 0.00 0.00 0.00 3.14
498 504 5.667539 AGATAGCGGTACAGATTGCATAT 57.332 39.130 0.00 0.00 0.00 1.78
507 513 6.310467 CGGTACAGATTGCATATTATTACGCT 59.690 38.462 0.00 0.00 0.00 5.07
510 516 9.530129 GTACAGATTGCATATTATTACGCTTTC 57.470 33.333 0.00 0.00 0.00 2.62
512 518 6.247165 CAGATTGCATATTATTACGCTTTCGC 59.753 38.462 0.00 0.00 39.84 4.70
514 520 5.605564 TGCATATTATTACGCTTTCGCAT 57.394 34.783 0.00 0.00 39.84 4.73
518 524 6.192863 GCATATTATTACGCTTTCGCATTAGC 59.807 38.462 0.00 0.00 39.84 3.09
519 525 4.461992 TTATTACGCTTTCGCATTAGCC 57.538 40.909 0.00 0.00 39.84 3.93
549 555 7.437267 GCAGGATCCAAATCTTGTTTATGAATG 59.563 37.037 15.82 0.00 40.26 2.67
561 569 8.879759 TCTTGTTTATGAATGTAACCGATCTTC 58.120 33.333 0.00 0.00 0.00 2.87
566 574 4.939271 TGAATGTAACCGATCTTCGCATA 58.061 39.130 0.00 0.00 38.82 3.14
569 577 6.806739 TGAATGTAACCGATCTTCGCATATAG 59.193 38.462 0.00 0.00 38.82 1.31
588 651 0.173255 GCGGGTCAATGGGTGAATTG 59.827 55.000 0.00 0.00 38.23 2.32
601 664 4.394920 TGGGTGAATTGTCTAGCGAATTTC 59.605 41.667 0.00 0.00 0.00 2.17
614 677 1.933181 CGAATTTCGCAGTGCAGGATA 59.067 47.619 16.83 0.70 31.14 2.59
618 681 2.472695 TTCGCAGTGCAGGATAAAGT 57.527 45.000 16.83 0.00 0.00 2.66
619 682 1.725641 TCGCAGTGCAGGATAAAGTG 58.274 50.000 16.83 0.00 0.00 3.16
626 690 4.759693 CAGTGCAGGATAAAGTGTTTGGTA 59.240 41.667 0.00 0.00 0.00 3.25
669 733 6.700520 ACGAATATTCACCTATCGTTTTCTCC 59.299 38.462 15.57 0.00 0.00 3.71
686 750 9.712305 CGTTTTCTCCAATATTCACCTCTATAT 57.288 33.333 0.00 0.00 0.00 0.86
738 803 9.003658 CACAGAAGTGGAAAATATTCTAACACT 57.996 33.333 8.40 8.40 42.13 3.55
741 806 9.384764 AGAAGTGGAAAATATTCTAACACTAGC 57.615 33.333 12.48 9.43 35.71 3.42
742 807 9.162764 GAAGTGGAAAATATTCTAACACTAGCA 57.837 33.333 12.48 0.00 35.71 3.49
743 808 8.723942 AGTGGAAAATATTCTAACACTAGCAG 57.276 34.615 11.15 0.00 35.29 4.24
744 809 7.281100 AGTGGAAAATATTCTAACACTAGCAGC 59.719 37.037 11.15 0.00 35.29 5.25
745 810 7.065803 GTGGAAAATATTCTAACACTAGCAGCA 59.934 37.037 0.00 0.00 35.79 4.41
746 811 7.280876 TGGAAAATATTCTAACACTAGCAGCAG 59.719 37.037 0.00 0.00 35.79 4.24
747 812 7.254932 GGAAAATATTCTAACACTAGCAGCAGG 60.255 40.741 0.00 0.00 35.79 4.85
748 813 2.386661 TTCTAACACTAGCAGCAGGC 57.613 50.000 0.00 0.00 45.30 4.85
749 814 0.537188 TCTAACACTAGCAGCAGGCC 59.463 55.000 0.00 0.00 46.50 5.19
750 815 0.462759 CTAACACTAGCAGCAGGCCC 60.463 60.000 0.00 0.00 46.50 5.80
751 816 0.909610 TAACACTAGCAGCAGGCCCT 60.910 55.000 0.00 0.00 46.50 5.19
752 817 0.909610 AACACTAGCAGCAGGCCCTA 60.910 55.000 0.00 0.00 46.50 3.53
810 875 9.103861 GGTGTTAGTTAAGTCTATCTAGTACGT 57.896 37.037 0.00 0.00 0.00 3.57
854 921 0.724549 TGCTAGGCGTTAATTGTGCG 59.275 50.000 0.00 0.00 0.00 5.34
858 925 2.325509 AGGCGTTAATTGTGCGTTTC 57.674 45.000 0.00 0.00 0.00 2.78
882 949 1.589716 CCCCCTTGCGCTTTTCTGAG 61.590 60.000 9.73 0.00 0.00 3.35
901 978 1.912001 GCAAAGCGCTCATTTATGCA 58.088 45.000 12.06 0.00 37.77 3.96
912 989 5.504501 CGCTCATTTATGCACAGATTAAGCA 60.505 40.000 0.00 0.00 43.14 3.91
920 997 8.909708 TTATGCACAGATTAAGCACAATTAAC 57.090 30.769 0.00 0.00 41.60 2.01
921 998 5.708948 TGCACAGATTAAGCACAATTAACC 58.291 37.500 0.00 0.00 32.55 2.85
958 1053 4.811024 CGCACCTTCTTGAGCTATGATTTA 59.189 41.667 0.00 0.00 0.00 1.40
959 1054 5.294306 CGCACCTTCTTGAGCTATGATTTAA 59.706 40.000 0.00 0.00 0.00 1.52
1001 1096 5.786311 TGCTTCTTTTGCTTGATTGCTTAT 58.214 33.333 0.00 0.00 0.00 1.73
1002 1097 5.636121 TGCTTCTTTTGCTTGATTGCTTATG 59.364 36.000 0.00 0.00 0.00 1.90
1077 1172 2.036992 AGGCTCTAATCAGATGGCTTCG 59.963 50.000 0.00 0.00 33.85 3.79
1193 1288 5.117355 TCTTATGGTATAGCACGCTGTAC 57.883 43.478 15.31 15.31 39.09 2.90
1306 1401 5.534654 TGTTAGTAAGGCATGAAGCTTGTTT 59.465 36.000 2.10 0.00 44.79 2.83
1337 1432 7.778083 TCGTACATGACCATGAGTTTACTTAT 58.222 34.615 16.07 0.00 41.20 1.73
1345 1440 5.938125 ACCATGAGTTTACTTATTTGCGTCT 59.062 36.000 0.00 0.00 0.00 4.18
1352 1447 9.990888 GAGTTTACTTATTTGCGTCTTATATCG 57.009 33.333 0.00 0.00 0.00 2.92
1364 1459 8.277490 TGCGTCTTATATCGGTATATCTCTTT 57.723 34.615 0.00 0.00 30.72 2.52
1374 1469 7.624360 TCGGTATATCTCTTTTGCAAATGTT 57.376 32.000 20.69 11.80 0.00 2.71
1414 1509 0.517316 AAATGCGAAGGCGAAGTCAC 59.483 50.000 0.00 0.00 44.10 3.67
1415 1510 0.602638 AATGCGAAGGCGAAGTCACA 60.603 50.000 0.00 0.00 44.10 3.58
1439 1534 6.648879 TTATGTTGCTTTAGCTTTGGTCTT 57.351 33.333 0.00 0.00 42.66 3.01
1460 1555 3.786553 TCTGTAACTCTCAGGGCCTTTA 58.213 45.455 1.32 0.00 34.15 1.85
1466 1561 3.582164 ACTCTCAGGGCCTTTATCTAGG 58.418 50.000 1.32 0.00 38.40 3.02
1621 1733 8.603242 AGTTTATCTAAAAGACAATGTGACGT 57.397 30.769 0.00 0.00 0.00 4.34
1627 1739 9.817809 ATCTAAAAGACAATGTGACGTATATGT 57.182 29.630 0.00 0.00 0.00 2.29
1628 1740 9.647797 TCTAAAAGACAATGTGACGTATATGTT 57.352 29.630 0.00 0.00 0.00 2.71
1629 1741 9.689075 CTAAAAGACAATGTGACGTATATGTTG 57.311 33.333 0.00 0.00 0.00 3.33
1630 1742 7.899178 AAAGACAATGTGACGTATATGTTGA 57.101 32.000 0.00 0.00 0.00 3.18
1631 1743 7.899178 AAGACAATGTGACGTATATGTTGAA 57.101 32.000 0.00 0.00 0.00 2.69
1632 1744 7.899178 AGACAATGTGACGTATATGTTGAAA 57.101 32.000 0.00 0.00 0.00 2.69
1633 1745 8.317891 AGACAATGTGACGTATATGTTGAAAA 57.682 30.769 0.00 0.00 0.00 2.29
1634 1746 8.443160 AGACAATGTGACGTATATGTTGAAAAG 58.557 33.333 0.00 0.00 0.00 2.27
1635 1747 7.526608 ACAATGTGACGTATATGTTGAAAAGG 58.473 34.615 0.00 0.00 0.00 3.11
1636 1748 7.174253 ACAATGTGACGTATATGTTGAAAAGGT 59.826 33.333 0.00 0.00 0.00 3.50
1637 1749 7.681939 ATGTGACGTATATGTTGAAAAGGTT 57.318 32.000 0.00 0.00 0.00 3.50
1638 1750 8.780846 ATGTGACGTATATGTTGAAAAGGTTA 57.219 30.769 0.00 0.00 0.00 2.85
1639 1751 8.780846 TGTGACGTATATGTTGAAAAGGTTAT 57.219 30.769 0.00 0.00 0.00 1.89
1640 1752 8.875803 TGTGACGTATATGTTGAAAAGGTTATC 58.124 33.333 0.00 0.00 0.00 1.75
1641 1753 8.875803 GTGACGTATATGTTGAAAAGGTTATCA 58.124 33.333 0.00 0.00 0.00 2.15
1642 1754 9.438228 TGACGTATATGTTGAAAAGGTTATCAA 57.562 29.630 0.00 0.00 33.37 2.57
1650 1762 9.829507 ATGTTGAAAAGGTTATCAAATTTCACA 57.170 25.926 0.00 0.00 39.09 3.58
1651 1763 9.829507 TGTTGAAAAGGTTATCAAATTTCACAT 57.170 25.926 0.00 0.00 39.09 3.21
1654 1766 9.695526 TGAAAAGGTTATCAAATTTCACATGAG 57.304 29.630 0.00 0.00 35.67 2.90
1655 1767 8.538409 AAAAGGTTATCAAATTTCACATGAGC 57.462 30.769 0.00 0.00 0.00 4.26
1656 1768 7.472334 AAGGTTATCAAATTTCACATGAGCT 57.528 32.000 0.00 0.00 0.00 4.09
1657 1769 8.579850 AAGGTTATCAAATTTCACATGAGCTA 57.420 30.769 0.00 0.00 0.00 3.32
1658 1770 8.218338 AGGTTATCAAATTTCACATGAGCTAG 57.782 34.615 0.00 0.00 0.00 3.42
1659 1771 8.049117 AGGTTATCAAATTTCACATGAGCTAGA 58.951 33.333 0.00 0.00 0.00 2.43
1660 1772 8.677300 GGTTATCAAATTTCACATGAGCTAGAA 58.323 33.333 0.00 0.00 0.00 2.10
1674 1786 4.591498 TGAGCTAGAAACCCTGTAACTCAA 59.409 41.667 0.00 0.00 0.00 3.02
1681 1793 9.503399 CTAGAAACCCTGTAACTCAATTAAAGT 57.497 33.333 0.00 0.00 0.00 2.66
1693 1805 6.373779 ACTCAATTAAAGTCGCTTTGTCATG 58.626 36.000 12.99 0.00 35.21 3.07
1697 1809 5.940192 TTAAAGTCGCTTTGTCATGTGAT 57.060 34.783 12.99 0.00 35.21 3.06
1700 1812 2.481568 AGTCGCTTTGTCATGTGATGTG 59.518 45.455 0.00 0.00 0.00 3.21
1726 1839 3.969287 TGATCTGTCATAGGCCATAGC 57.031 47.619 5.01 0.00 38.76 2.97
1734 1847 2.089980 CATAGGCCATAGCATGAAGGC 58.910 52.381 5.01 3.04 46.28 4.35
1735 1848 1.438469 TAGGCCATAGCATGAAGGCT 58.562 50.000 5.01 9.20 46.23 4.58
1790 1905 3.004752 AGATAAGTTCATGGGTGCCAC 57.995 47.619 0.00 0.00 35.80 5.01
1804 1919 3.181487 GGGTGCCACATGCTTATAAGTTG 60.181 47.826 13.91 13.40 42.00 3.16
1836 1951 9.900710 GTATCAACGATGATGAAGTACTATTCT 57.099 33.333 17.54 0.00 45.82 2.40
1837 1952 8.809159 ATCAACGATGATGAAGTACTATTCTG 57.191 34.615 7.45 0.00 44.63 3.02
1858 1973 4.808558 TGCGCTTTTTGAATTCTTATGCT 58.191 34.783 9.73 0.00 0.00 3.79
1874 2053 8.537728 TTCTTATGCTGGGTCAAATATTCATT 57.462 30.769 0.00 0.00 0.00 2.57
1877 2056 9.850628 CTTATGCTGGGTCAAATATTCATTATG 57.149 33.333 0.00 0.00 0.00 1.90
1880 2059 8.303780 TGCTGGGTCAAATATTCATTATGAAA 57.696 30.769 11.88 2.49 40.12 2.69
1901 2080 8.856153 TGAAATAAGCAAGTTGGTGTTATCTA 57.144 30.769 8.61 0.00 0.00 1.98
1902 2081 8.726988 TGAAATAAGCAAGTTGGTGTTATCTAC 58.273 33.333 8.61 1.12 0.00 2.59
1931 2110 9.750882 GAAATATTGAGTTTAGACCAACGTTAC 57.249 33.333 0.00 0.00 0.00 2.50
1943 2122 4.370917 ACCAACGTTACGACTTGTACAAT 58.629 39.130 13.03 0.00 31.20 2.71
1950 2129 6.005289 CGTTACGACTTGTACAATAAAGCAC 58.995 40.000 9.13 2.34 31.20 4.40
1952 2131 4.053295 ACGACTTGTACAATAAAGCACGT 58.947 39.130 9.13 9.87 36.04 4.49
1962 2141 0.948678 TAAAGCACGTCCACCTTTGC 59.051 50.000 9.15 0.00 35.08 3.68
2029 2208 2.039418 GCCCTGAAGGACCAAAACTTT 58.961 47.619 0.00 0.00 38.24 2.66
2033 2212 4.647399 CCCTGAAGGACCAAAACTTTGTTA 59.353 41.667 0.00 0.00 38.24 2.41
2053 2232 9.928236 TTTGTTATTGCTTGCAAATAAAAGAAC 57.072 25.926 12.17 7.03 32.71 3.01
2072 2251 4.404073 AGAACTCTTGACTCTTGACACACT 59.596 41.667 0.00 0.00 0.00 3.55
2227 2406 4.371624 TCTTCAGAATGTTGTGGGTGAT 57.628 40.909 0.00 0.00 37.40 3.06
2284 2463 7.139287 AGATCAACTCATTCAGAATCCAGAT 57.861 36.000 0.00 0.98 0.00 2.90
2312 2491 7.061566 AGGGAGAAGAAGACTGCTTATATTC 57.938 40.000 0.00 0.00 31.04 1.75
2314 2493 6.928492 GGGAGAAGAAGACTGCTTATATTCAG 59.072 42.308 0.00 1.50 31.04 3.02
2317 2496 5.885449 AGAAGACTGCTTATATTCAGCCT 57.115 39.130 4.56 0.00 36.33 4.58
2491 2670 4.448210 GCACTCCAACTATATCGGGAAAA 58.552 43.478 0.00 0.00 0.00 2.29
2518 2697 3.146847 GGTTAAGTCCAGGGACAAAGTG 58.853 50.000 19.92 0.00 46.76 3.16
2541 2720 5.301551 TGAAGAAGCATAAAAAGCACAAGGA 59.698 36.000 0.00 0.00 0.00 3.36
2563 2742 4.200092 AGAAAGACAAGGACAAGGAACAC 58.800 43.478 0.00 0.00 0.00 3.32
2602 2781 4.322049 CGCCATAAGGATCGGAGTAAAGAT 60.322 45.833 0.00 0.00 36.89 2.40
2772 2969 7.973944 GGTAGTCCCATTTATTCAATGTGTTTC 59.026 37.037 0.00 0.00 40.87 2.78
2785 2982 8.468720 TTCAATGTGTTTCAAATAGCATGATG 57.531 30.769 0.00 0.00 0.00 3.07
2786 2983 7.604549 TCAATGTGTTTCAAATAGCATGATGT 58.395 30.769 0.00 0.00 0.00 3.06
2808 3005 5.651576 TGTTGACTCATATTTTGGCTATGCA 59.348 36.000 0.00 0.00 0.00 3.96
2824 3021 9.748708 TTGGCTATGCACTAAATTTTAATGATC 57.251 29.630 1.97 0.00 0.00 2.92
2871 3070 0.975887 ATGGAAAATTTGGCGGCTGT 59.024 45.000 11.43 0.00 0.00 4.40
2946 3149 6.423001 GCCATGATTTCCTTCAATAATGCTTC 59.577 38.462 0.00 0.00 0.00 3.86
2957 3163 5.116180 TCAATAATGCTTCTGTCCTTACCG 58.884 41.667 0.00 0.00 0.00 4.02
3010 3216 4.436317 CGCAAAATTCAATGAAATGGGCAG 60.436 41.667 0.00 0.00 0.00 4.85
3098 3304 3.759086 TGTTTTATGCTGTTAATGGGCGA 59.241 39.130 0.00 0.00 0.00 5.54
3160 3366 9.444600 GAGGTATGTGTTCCTTGAACTTTTATA 57.555 33.333 8.30 0.79 42.39 0.98
3199 3405 1.140852 TCAGTTTGTGTCCTGGACCAG 59.859 52.381 23.42 15.15 0.00 4.00
3245 3451 4.623932 TGACTTGAGTATCTTGGCTTGT 57.376 40.909 0.00 0.00 34.92 3.16
3287 3493 5.048294 TCGTGTAAATGTCTTCTGCTAGTGA 60.048 40.000 0.00 0.00 0.00 3.41
3315 3521 6.926630 TGCCTTTTATATGGTTCCTTTTGT 57.073 33.333 0.00 0.00 0.00 2.83
3325 3531 6.976934 ATGGTTCCTTTTGTATTGTGTCTT 57.023 33.333 0.00 0.00 0.00 3.01
3339 3545 1.947456 GTGTCTTTCGGCTTTGGAACT 59.053 47.619 0.00 0.00 0.00 3.01
3503 3709 6.380995 CAATTTATTGTACTTGCTGTCAGCA 58.619 36.000 23.68 23.68 40.07 4.41
3523 3729 6.033966 CAGCACATAGTCGAGTTATTACACA 58.966 40.000 0.00 0.00 0.00 3.72
3528 3734 3.444916 AGTCGAGTTATTACACATGCCG 58.555 45.455 0.00 0.00 0.00 5.69
3541 3758 0.109781 CATGCCGTTGTAGTGGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
3547 3764 2.095768 CCGTTGTAGTGGTTGCTGATTG 60.096 50.000 0.00 0.00 0.00 2.67
3548 3765 2.548057 CGTTGTAGTGGTTGCTGATTGT 59.452 45.455 0.00 0.00 0.00 2.71
3576 3966 2.104792 GAGTTGGGTATGCTATGCTGGA 59.895 50.000 0.00 0.00 0.00 3.86
3630 4020 5.773575 TCAGTTGTAGATGACTGAGTCAAC 58.226 41.667 20.26 16.99 45.96 3.18
3672 4062 7.661536 AGCATCTACCAGTTCTAGTTTATGA 57.338 36.000 0.00 0.00 0.00 2.15
3688 4078 0.673644 ATGACCAGTTTCCGCCTTCG 60.674 55.000 0.00 0.00 0.00 3.79
3715 4105 2.052468 ACTCCGGGACAACTTTAAGGT 58.948 47.619 0.00 0.00 0.00 3.50
3752 4142 8.080417 GCATGTCAGCATCTGATGTAATAATTT 58.920 33.333 18.19 0.00 42.73 1.82
3809 4206 7.913423 CACAATTTGGAGATGTGTACTAGATG 58.087 38.462 0.00 0.00 39.60 2.90
3810 4207 7.550551 CACAATTTGGAGATGTGTACTAGATGT 59.449 37.037 0.00 0.00 39.60 3.06
3811 4208 8.103305 ACAATTTGGAGATGTGTACTAGATGTT 58.897 33.333 0.00 0.00 0.00 2.71
3812 4209 8.950210 CAATTTGGAGATGTGTACTAGATGTTT 58.050 33.333 0.00 0.00 0.00 2.83
3813 4210 9.520515 AATTTGGAGATGTGTACTAGATGTTTT 57.479 29.630 0.00 0.00 0.00 2.43
3814 4211 7.905604 TTGGAGATGTGTACTAGATGTTTTG 57.094 36.000 0.00 0.00 0.00 2.44
3815 4212 7.004555 TGGAGATGTGTACTAGATGTTTTGT 57.995 36.000 0.00 0.00 0.00 2.83
3816 4213 6.873605 TGGAGATGTGTACTAGATGTTTTGTG 59.126 38.462 0.00 0.00 0.00 3.33
3817 4214 7.097192 GGAGATGTGTACTAGATGTTTTGTGA 58.903 38.462 0.00 0.00 0.00 3.58
3818 4215 7.602644 GGAGATGTGTACTAGATGTTTTGTGAA 59.397 37.037 0.00 0.00 0.00 3.18
3819 4216 8.539770 AGATGTGTACTAGATGTTTTGTGAAG 57.460 34.615 0.00 0.00 0.00 3.02
3820 4217 8.150945 AGATGTGTACTAGATGTTTTGTGAAGT 58.849 33.333 0.00 0.00 0.00 3.01
3821 4218 7.709269 TGTGTACTAGATGTTTTGTGAAGTC 57.291 36.000 0.00 0.00 0.00 3.01
3822 4219 7.269316 TGTGTACTAGATGTTTTGTGAAGTCA 58.731 34.615 0.00 0.00 0.00 3.41
3823 4220 7.223971 TGTGTACTAGATGTTTTGTGAAGTCAC 59.776 37.037 4.43 4.43 46.59 3.67
3824 4221 6.704493 TGTACTAGATGTTTTGTGAAGTCACC 59.296 38.462 8.91 0.00 45.88 4.02
3825 4222 5.063880 ACTAGATGTTTTGTGAAGTCACCC 58.936 41.667 8.91 0.00 45.88 4.61
3826 4223 3.897239 AGATGTTTTGTGAAGTCACCCA 58.103 40.909 8.91 1.72 45.88 4.51
3827 4224 3.885297 AGATGTTTTGTGAAGTCACCCAG 59.115 43.478 8.91 0.00 45.88 4.45
3828 4225 1.748493 TGTTTTGTGAAGTCACCCAGC 59.252 47.619 8.91 0.00 45.88 4.85
3829 4226 1.067060 GTTTTGTGAAGTCACCCAGCC 59.933 52.381 8.91 0.00 45.88 4.85
3830 4227 0.817634 TTTGTGAAGTCACCCAGCCG 60.818 55.000 8.91 0.00 45.88 5.52
3831 4228 1.978455 TTGTGAAGTCACCCAGCCGT 61.978 55.000 8.91 0.00 45.88 5.68
3832 4229 1.227853 GTGAAGTCACCCAGCCGTT 60.228 57.895 0.00 0.00 40.85 4.44
3833 4230 1.227823 TGAAGTCACCCAGCCGTTG 60.228 57.895 0.00 0.00 0.00 4.10
3834 4231 1.227853 GAAGTCACCCAGCCGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
3835 4232 0.818040 GAAGTCACCCAGCCGTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
3836 4233 0.395173 AAGTCACCCAGCCGTTGTTT 60.395 50.000 0.00 0.00 0.00 2.83
3837 4234 0.470766 AGTCACCCAGCCGTTGTTTA 59.529 50.000 0.00 0.00 0.00 2.01
3838 4235 1.073284 AGTCACCCAGCCGTTGTTTAT 59.927 47.619 0.00 0.00 0.00 1.40
3839 4236 1.467342 GTCACCCAGCCGTTGTTTATC 59.533 52.381 0.00 0.00 0.00 1.75
3840 4237 0.808755 CACCCAGCCGTTGTTTATCC 59.191 55.000 0.00 0.00 0.00 2.59
3841 4238 0.323087 ACCCAGCCGTTGTTTATCCC 60.323 55.000 0.00 0.00 0.00 3.85
3842 4239 1.035385 CCCAGCCGTTGTTTATCCCC 61.035 60.000 0.00 0.00 0.00 4.81
3843 4240 1.035385 CCAGCCGTTGTTTATCCCCC 61.035 60.000 0.00 0.00 0.00 5.40
3844 4241 0.034477 CAGCCGTTGTTTATCCCCCT 60.034 55.000 0.00 0.00 0.00 4.79
3845 4242 0.702316 AGCCGTTGTTTATCCCCCTT 59.298 50.000 0.00 0.00 0.00 3.95
3846 4243 0.815095 GCCGTTGTTTATCCCCCTTG 59.185 55.000 0.00 0.00 0.00 3.61
3847 4244 1.470051 CCGTTGTTTATCCCCCTTGG 58.530 55.000 0.00 0.00 0.00 3.61
3858 4255 2.976099 CCCCTTGGGCAAAACTAGG 58.024 57.895 0.00 0.00 35.35 3.02
3859 4256 0.614697 CCCCTTGGGCAAAACTAGGG 60.615 60.000 0.00 5.18 44.27 3.53
3861 4258 2.532250 CCTTGGGCAAAACTAGGGAT 57.468 50.000 0.00 0.00 0.00 3.85
3862 4259 2.820178 CCTTGGGCAAAACTAGGGATT 58.180 47.619 0.00 0.00 0.00 3.01
3863 4260 3.173151 CCTTGGGCAAAACTAGGGATTT 58.827 45.455 0.00 0.00 0.00 2.17
3864 4261 3.582647 CCTTGGGCAAAACTAGGGATTTT 59.417 43.478 0.00 0.00 0.00 1.82
3865 4262 4.775253 CCTTGGGCAAAACTAGGGATTTTA 59.225 41.667 0.00 0.00 0.00 1.52
3866 4263 5.105351 CCTTGGGCAAAACTAGGGATTTTAG 60.105 44.000 0.00 0.00 0.00 1.85
3867 4264 5.005628 TGGGCAAAACTAGGGATTTTAGT 57.994 39.130 0.00 0.00 32.90 2.24
3868 4265 4.770010 TGGGCAAAACTAGGGATTTTAGTG 59.230 41.667 0.00 0.00 31.96 2.74
3869 4266 4.381612 GGGCAAAACTAGGGATTTTAGTGC 60.382 45.833 0.00 0.00 31.96 4.40
3870 4267 4.462834 GGCAAAACTAGGGATTTTAGTGCT 59.537 41.667 0.00 0.00 31.96 4.40
3871 4268 5.650703 GGCAAAACTAGGGATTTTAGTGCTA 59.349 40.000 0.00 0.00 31.96 3.49
3872 4269 6.321435 GGCAAAACTAGGGATTTTAGTGCTAT 59.679 38.462 0.00 0.00 31.96 2.97
3873 4270 7.147897 GGCAAAACTAGGGATTTTAGTGCTATT 60.148 37.037 0.00 0.00 31.96 1.73
3874 4271 8.899771 GCAAAACTAGGGATTTTAGTGCTATTA 58.100 33.333 0.00 0.00 31.96 0.98
3878 4275 8.196378 ACTAGGGATTTTAGTGCTATTAGAGG 57.804 38.462 0.00 0.00 30.46 3.69
3879 4276 8.011290 ACTAGGGATTTTAGTGCTATTAGAGGA 58.989 37.037 0.00 0.00 30.46 3.71
3880 4277 7.068686 AGGGATTTTAGTGCTATTAGAGGAC 57.931 40.000 0.00 0.00 46.52 3.85
3893 4290 9.981460 TGCTATTAGAGGACTTCATATATCTCA 57.019 33.333 0.00 0.00 0.00 3.27
3912 4309 6.539649 TCTCACTAATTTGTAGTGCAACAC 57.460 37.500 8.35 0.00 43.30 3.32
3913 4310 6.052360 TCTCACTAATTTGTAGTGCAACACA 58.948 36.000 8.35 0.00 43.30 3.72
3914 4311 6.710295 TCTCACTAATTTGTAGTGCAACACAT 59.290 34.615 8.35 0.00 43.30 3.21
3915 4312 6.667370 TCACTAATTTGTAGTGCAACACATG 58.333 36.000 8.35 0.00 43.30 3.21
3916 4313 5.858049 CACTAATTTGTAGTGCAACACATGG 59.142 40.000 0.00 0.00 41.43 3.66
3917 4314 4.935352 AATTTGTAGTGCAACACATGGT 57.065 36.364 0.00 0.00 41.43 3.55
3918 4315 3.706802 TTTGTAGTGCAACACATGGTG 57.293 42.857 0.00 0.00 41.43 4.17
3919 4316 2.629336 TGTAGTGCAACACATGGTGA 57.371 45.000 0.00 0.00 41.43 4.02
3920 4317 3.138884 TGTAGTGCAACACATGGTGAT 57.861 42.857 0.00 0.00 41.43 3.06
3921 4318 3.485394 TGTAGTGCAACACATGGTGATT 58.515 40.909 0.00 0.00 41.43 2.57
3922 4319 4.646572 TGTAGTGCAACACATGGTGATTA 58.353 39.130 0.00 0.00 41.43 1.75
3923 4320 4.694982 TGTAGTGCAACACATGGTGATTAG 59.305 41.667 0.00 0.00 41.43 1.73
3924 4321 3.754965 AGTGCAACACATGGTGATTAGT 58.245 40.909 0.00 0.00 41.43 2.24
3925 4322 3.503363 AGTGCAACACATGGTGATTAGTG 59.497 43.478 0.00 0.00 41.43 2.74
3926 4323 2.228582 TGCAACACATGGTGATTAGTGC 59.771 45.455 0.00 5.40 36.96 4.40
3927 4324 2.228582 GCAACACATGGTGATTAGTGCA 59.771 45.455 0.00 0.00 36.96 4.57
3928 4325 3.671433 GCAACACATGGTGATTAGTGCAG 60.671 47.826 0.00 0.00 36.96 4.41
3929 4326 3.423539 ACACATGGTGATTAGTGCAGT 57.576 42.857 2.98 0.00 36.96 4.40
3930 4327 3.076621 ACACATGGTGATTAGTGCAGTG 58.923 45.455 3.69 0.00 36.96 3.66
3931 4328 3.244526 ACACATGGTGATTAGTGCAGTGA 60.245 43.478 3.69 0.00 36.96 3.41
3932 4329 3.752747 CACATGGTGATTAGTGCAGTGAA 59.247 43.478 3.69 0.00 35.23 3.18
3933 4330 4.397103 CACATGGTGATTAGTGCAGTGAAT 59.603 41.667 3.69 0.31 35.23 2.57
3934 4331 4.397103 ACATGGTGATTAGTGCAGTGAATG 59.603 41.667 3.69 0.00 0.00 2.67
3935 4332 4.284829 TGGTGATTAGTGCAGTGAATGA 57.715 40.909 3.69 0.00 0.00 2.57
3936 4333 4.847198 TGGTGATTAGTGCAGTGAATGAT 58.153 39.130 3.69 0.00 0.00 2.45
3937 4334 4.637091 TGGTGATTAGTGCAGTGAATGATG 59.363 41.667 3.69 0.00 0.00 3.07
3938 4335 4.637534 GGTGATTAGTGCAGTGAATGATGT 59.362 41.667 3.69 0.00 0.00 3.06
3939 4336 5.817296 GGTGATTAGTGCAGTGAATGATGTA 59.183 40.000 3.69 0.00 0.00 2.29
3940 4337 6.484643 GGTGATTAGTGCAGTGAATGATGTAT 59.515 38.462 3.69 0.00 0.00 2.29
3941 4338 7.012704 GGTGATTAGTGCAGTGAATGATGTATT 59.987 37.037 3.69 0.00 0.00 1.89
3942 4339 8.066595 GTGATTAGTGCAGTGAATGATGTATTC 58.933 37.037 3.69 0.00 44.45 1.75
3943 4340 6.588348 TTAGTGCAGTGAATGATGTATTCG 57.412 37.500 3.69 0.00 46.65 3.34
3944 4341 3.873361 AGTGCAGTGAATGATGTATTCGG 59.127 43.478 0.00 0.00 46.65 4.30
3945 4342 3.871006 GTGCAGTGAATGATGTATTCGGA 59.129 43.478 0.00 0.00 46.65 4.55
3946 4343 4.332543 GTGCAGTGAATGATGTATTCGGAA 59.667 41.667 0.00 0.00 46.65 4.30
3947 4344 4.940654 TGCAGTGAATGATGTATTCGGAAA 59.059 37.500 0.00 0.00 46.65 3.13
3948 4345 5.163764 TGCAGTGAATGATGTATTCGGAAAC 60.164 40.000 0.00 0.00 46.65 2.78
3949 4346 5.163764 GCAGTGAATGATGTATTCGGAAACA 60.164 40.000 0.00 1.64 46.65 2.83
3950 4347 6.622679 GCAGTGAATGATGTATTCGGAAACAA 60.623 38.462 0.00 0.00 46.65 2.83
3951 4348 7.304735 CAGTGAATGATGTATTCGGAAACAAA 58.695 34.615 0.00 0.00 46.65 2.83
3952 4349 7.482743 CAGTGAATGATGTATTCGGAAACAAAG 59.517 37.037 0.00 0.00 46.65 2.77
3953 4350 7.390440 AGTGAATGATGTATTCGGAAACAAAGA 59.610 33.333 0.00 0.00 46.65 2.52
3954 4351 8.184192 GTGAATGATGTATTCGGAAACAAAGAT 58.816 33.333 0.00 0.00 46.65 2.40
3955 4352 8.183536 TGAATGATGTATTCGGAAACAAAGATG 58.816 33.333 0.00 0.00 46.65 2.90
3956 4353 7.864108 ATGATGTATTCGGAAACAAAGATGA 57.136 32.000 0.00 0.00 0.00 2.92
3957 4354 7.864108 TGATGTATTCGGAAACAAAGATGAT 57.136 32.000 0.00 0.00 0.00 2.45
3958 4355 7.696755 TGATGTATTCGGAAACAAAGATGATG 58.303 34.615 0.00 0.00 0.00 3.07
3959 4356 6.435430 TGTATTCGGAAACAAAGATGATGG 57.565 37.500 0.00 0.00 0.00 3.51
3960 4357 3.848272 TTCGGAAACAAAGATGATGGC 57.152 42.857 0.00 0.00 0.00 4.40
3961 4358 3.071874 TCGGAAACAAAGATGATGGCT 57.928 42.857 0.00 0.00 0.00 4.75
3962 4359 3.420893 TCGGAAACAAAGATGATGGCTT 58.579 40.909 0.00 0.00 0.00 4.35
3963 4360 3.191162 TCGGAAACAAAGATGATGGCTTG 59.809 43.478 0.00 0.00 0.00 4.01
3964 4361 3.057315 CGGAAACAAAGATGATGGCTTGT 60.057 43.478 0.00 0.00 0.00 3.16
3965 4362 4.559300 CGGAAACAAAGATGATGGCTTGTT 60.559 41.667 0.00 0.00 0.00 2.83
3966 4363 5.299949 GGAAACAAAGATGATGGCTTGTTT 58.700 37.500 10.58 10.58 33.52 2.83
3967 4364 5.759763 GGAAACAAAGATGATGGCTTGTTTT 59.240 36.000 11.72 0.00 32.31 2.43
3968 4365 6.293027 GGAAACAAAGATGATGGCTTGTTTTG 60.293 38.462 11.72 5.87 32.31 2.44
3969 4366 5.280654 ACAAAGATGATGGCTTGTTTTGT 57.719 34.783 0.00 0.00 0.00 2.83
3970 4367 5.051816 ACAAAGATGATGGCTTGTTTTGTG 58.948 37.500 0.00 0.00 0.00 3.33
3971 4368 5.163426 ACAAAGATGATGGCTTGTTTTGTGA 60.163 36.000 0.00 0.00 0.00 3.58
3972 4369 5.733620 AAGATGATGGCTTGTTTTGTGAT 57.266 34.783 0.00 0.00 0.00 3.06
3973 4370 5.733620 AGATGATGGCTTGTTTTGTGATT 57.266 34.783 0.00 0.00 0.00 2.57
3974 4371 6.105397 AGATGATGGCTTGTTTTGTGATTT 57.895 33.333 0.00 0.00 0.00 2.17
3975 4372 6.527423 AGATGATGGCTTGTTTTGTGATTTT 58.473 32.000 0.00 0.00 0.00 1.82
3976 4373 6.647895 AGATGATGGCTTGTTTTGTGATTTTC 59.352 34.615 0.00 0.00 0.00 2.29
3977 4374 5.668471 TGATGGCTTGTTTTGTGATTTTCA 58.332 33.333 0.00 0.00 0.00 2.69
3978 4375 5.754406 TGATGGCTTGTTTTGTGATTTTCAG 59.246 36.000 0.00 0.00 0.00 3.02
3979 4376 5.083533 TGGCTTGTTTTGTGATTTTCAGT 57.916 34.783 0.00 0.00 0.00 3.41
3980 4377 6.214191 TGGCTTGTTTTGTGATTTTCAGTA 57.786 33.333 0.00 0.00 0.00 2.74
3981 4378 6.272318 TGGCTTGTTTTGTGATTTTCAGTAG 58.728 36.000 0.00 0.00 0.00 2.57
3982 4379 5.691754 GGCTTGTTTTGTGATTTTCAGTAGG 59.308 40.000 0.00 0.00 0.00 3.18
3983 4380 5.691754 GCTTGTTTTGTGATTTTCAGTAGGG 59.308 40.000 0.00 0.00 0.00 3.53
3984 4381 6.682861 GCTTGTTTTGTGATTTTCAGTAGGGT 60.683 38.462 0.00 0.00 0.00 4.34
3985 4382 7.469456 GCTTGTTTTGTGATTTTCAGTAGGGTA 60.469 37.037 0.00 0.00 0.00 3.69
3986 4383 7.883391 TGTTTTGTGATTTTCAGTAGGGTAA 57.117 32.000 0.00 0.00 0.00 2.85
3987 4384 8.294954 TGTTTTGTGATTTTCAGTAGGGTAAA 57.705 30.769 0.00 0.00 0.00 2.01
3988 4385 8.750298 TGTTTTGTGATTTTCAGTAGGGTAAAA 58.250 29.630 0.00 0.00 0.00 1.52
3989 4386 9.589111 GTTTTGTGATTTTCAGTAGGGTAAAAA 57.411 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 249 4.609018 CTAGATGGTGCGCCGGGG 62.609 72.222 15.40 15.40 37.67 5.73
284 285 1.680735 GGCATGAAACTTGTGTGGTCA 59.319 47.619 0.00 0.00 0.00 4.02
300 301 4.230455 AGTATCTTCAAGCTAGAGGGCAT 58.770 43.478 0.00 0.00 34.17 4.40
320 321 2.296471 CAGACACGGAGGTAAACAGAGT 59.704 50.000 0.00 0.00 0.00 3.24
331 332 3.535629 TTGGCAGGCAGACACGGAG 62.536 63.158 0.00 0.00 32.34 4.63
367 368 0.242825 CGACGGCACAGAGTCCTTAA 59.757 55.000 0.00 0.00 34.10 1.85
402 403 4.038642 TGTTAGCACCAACAATTTCTTCCC 59.961 41.667 0.00 0.00 35.53 3.97
443 444 1.798813 CGATTAGTTGCTAATCCGGGC 59.201 52.381 17.92 0.00 45.44 6.13
444 445 2.413837 CCGATTAGTTGCTAATCCGGG 58.586 52.381 17.92 12.69 45.44 5.73
445 446 1.798813 GCCGATTAGTTGCTAATCCGG 59.201 52.381 21.37 21.37 45.44 5.14
446 447 1.798813 GGCCGATTAGTTGCTAATCCG 59.201 52.381 17.92 14.18 45.44 4.18
478 484 9.314321 GTAATAATATGCAATCTGTACCGCTAT 57.686 33.333 0.00 0.00 0.00 2.97
487 493 7.696244 CGAAAGCGTAATAATATGCAATCTG 57.304 36.000 4.86 0.00 44.87 2.90
512 518 3.708403 TGGATCCTGCATAGGCTAATG 57.292 47.619 14.23 0.00 44.22 1.90
514 520 4.352001 AGATTTGGATCCTGCATAGGCTAA 59.648 41.667 14.23 0.00 44.22 3.09
518 524 4.467769 ACAAGATTTGGATCCTGCATAGG 58.532 43.478 14.23 0.71 39.22 2.57
519 525 6.461110 AAACAAGATTTGGATCCTGCATAG 57.539 37.500 14.23 0.32 32.44 2.23
566 574 0.916086 TTCACCCATTGACCCGCTAT 59.084 50.000 0.00 0.00 32.26 2.97
569 577 0.173255 CAATTCACCCATTGACCCGC 59.827 55.000 0.00 0.00 36.39 6.13
571 579 2.807676 AGACAATTCACCCATTGACCC 58.192 47.619 0.48 0.00 37.55 4.46
572 580 3.378427 GCTAGACAATTCACCCATTGACC 59.622 47.826 0.00 0.00 37.55 4.02
573 581 3.063997 CGCTAGACAATTCACCCATTGAC 59.936 47.826 0.00 0.00 37.55 3.18
577 640 3.627395 TTCGCTAGACAATTCACCCAT 57.373 42.857 0.00 0.00 0.00 4.00
601 664 1.442769 ACACTTTATCCTGCACTGCG 58.557 50.000 0.00 0.00 0.00 5.18
614 677 9.744468 GTCAAAATCTGTTATACCAAACACTTT 57.256 29.630 0.00 0.00 35.56 2.66
618 681 7.285629 TGGTGTCAAAATCTGTTATACCAAACA 59.714 33.333 0.00 0.00 37.75 2.83
619 682 7.593644 GTGGTGTCAAAATCTGTTATACCAAAC 59.406 37.037 0.00 0.00 37.42 2.93
626 690 6.817765 ATTCGTGGTGTCAAAATCTGTTAT 57.182 33.333 0.00 0.00 0.00 1.89
639 703 4.098960 ACGATAGGTGAATATTCGTGGTGT 59.901 41.667 10.80 1.25 43.77 4.16
686 750 9.386010 GTATGGTAAGTTGGTAAATGTACATGA 57.614 33.333 9.63 0.00 31.21 3.07
690 754 8.550710 TGTGTATGGTAAGTTGGTAAATGTAC 57.449 34.615 0.00 0.00 0.00 2.90
693 757 7.915293 TCTGTGTATGGTAAGTTGGTAAATG 57.085 36.000 0.00 0.00 0.00 2.32
736 801 0.618968 AGTTAGGGCCTGCTGCTAGT 60.619 55.000 18.53 0.00 40.92 2.57
737 802 1.342819 CTAGTTAGGGCCTGCTGCTAG 59.657 57.143 18.53 16.67 40.92 3.42
738 803 1.414158 CTAGTTAGGGCCTGCTGCTA 58.586 55.000 18.53 11.50 40.92 3.49
739 804 1.977293 GCTAGTTAGGGCCTGCTGCT 61.977 60.000 18.53 10.95 40.92 4.24
740 805 1.524849 GCTAGTTAGGGCCTGCTGC 60.525 63.158 18.53 15.24 40.16 5.25
741 806 0.179062 CTGCTAGTTAGGGCCTGCTG 60.179 60.000 18.53 10.78 0.00 4.41
742 807 0.325671 TCTGCTAGTTAGGGCCTGCT 60.326 55.000 18.53 16.47 0.00 4.24
743 808 0.761802 ATCTGCTAGTTAGGGCCTGC 59.238 55.000 18.53 11.44 0.00 4.85
744 809 1.542108 GCATCTGCTAGTTAGGGCCTG 60.542 57.143 18.53 0.00 38.21 4.85
745 810 0.761802 GCATCTGCTAGTTAGGGCCT 59.238 55.000 12.58 12.58 38.21 5.19
746 811 0.469917 TGCATCTGCTAGTTAGGGCC 59.530 55.000 0.00 0.00 42.66 5.80
747 812 2.332063 TTGCATCTGCTAGTTAGGGC 57.668 50.000 3.53 0.14 42.66 5.19
748 813 5.128919 AGAAATTGCATCTGCTAGTTAGGG 58.871 41.667 3.53 0.00 42.66 3.53
749 814 7.976135 ATAGAAATTGCATCTGCTAGTTAGG 57.024 36.000 3.53 0.00 42.66 2.69
834 899 1.129624 CGCACAATTAACGCCTAGCAA 59.870 47.619 0.00 0.00 0.00 3.91
865 932 1.211190 GCTCAGAAAAGCGCAAGGG 59.789 57.895 11.47 0.00 38.28 3.95
882 949 1.585214 GTGCATAAATGAGCGCTTTGC 59.415 47.619 13.26 14.45 46.98 3.68
886 953 2.028420 TCTGTGCATAAATGAGCGCT 57.972 45.000 11.27 11.27 41.57 5.92
889 956 5.684626 GTGCTTAATCTGTGCATAAATGAGC 59.315 40.000 0.00 0.00 39.00 4.26
891 958 6.756299 TGTGCTTAATCTGTGCATAAATGA 57.244 33.333 0.00 0.00 39.00 2.57
901 978 4.700213 AGCGGTTAATTGTGCTTAATCTGT 59.300 37.500 0.00 0.00 32.89 3.41
933 1010 0.462759 ATAGCTCAAGAAGGTGCGCC 60.463 55.000 8.71 8.71 36.91 6.53
971 1066 7.561556 CAATCAAGCAAAAGAAGCAAAGTTAG 58.438 34.615 0.00 0.00 0.00 2.34
1077 1172 8.318412 ACATTACCTTTTCCAAATTTACCATCC 58.682 33.333 0.00 0.00 0.00 3.51
1139 1234 5.828299 ATATGGTGTTACCCATTTTCGTG 57.172 39.130 9.88 0.00 42.70 4.35
1250 1345 9.533831 AAACCAGAATAGGTCAATCTGTTTATT 57.466 29.630 0.00 0.00 42.25 1.40
1252 1347 8.792633 CAAAACCAGAATAGGTCAATCTGTTTA 58.207 33.333 0.00 0.00 42.25 2.01
1255 1350 6.542821 TCAAAACCAGAATAGGTCAATCTGT 58.457 36.000 0.00 0.00 42.25 3.41
1263 1358 7.287810 ACTAACAACTCAAAACCAGAATAGGT 58.712 34.615 0.00 0.00 45.91 3.08
1273 1368 6.966021 TCATGCCTTACTAACAACTCAAAAC 58.034 36.000 0.00 0.00 0.00 2.43
1306 1401 2.495669 TCATGGTCATGTACGAGAAGCA 59.504 45.455 10.32 0.00 39.72 3.91
1337 1432 8.277490 AGAGATATACCGATATAAGACGCAAA 57.723 34.615 0.00 0.00 0.00 3.68
1414 1509 6.624423 AGACCAAAGCTAAAGCAACATAATG 58.376 36.000 4.54 0.00 45.16 1.90
1415 1510 6.840780 AGACCAAAGCTAAAGCAACATAAT 57.159 33.333 4.54 0.00 45.16 1.28
1439 1534 2.327325 AAGGCCCTGAGAGTTACAGA 57.673 50.000 0.00 0.00 37.54 3.41
1509 1609 6.737720 TTCACATGAGCTCACCTAGATTAT 57.262 37.500 20.97 0.00 0.00 1.28
1575 1675 4.018415 ACTTAACACTACCAGGGCATCAAT 60.018 41.667 0.00 0.00 0.00 2.57
1612 1724 7.681939 ACCTTTTCAACATATACGTCACATT 57.318 32.000 0.00 0.00 0.00 2.71
1624 1736 9.829507 TGTGAAATTTGATAACCTTTTCAACAT 57.170 25.926 0.00 0.00 37.85 2.71
1628 1740 9.695526 CTCATGTGAAATTTGATAACCTTTTCA 57.304 29.630 0.00 0.00 34.80 2.69
1629 1741 8.650714 GCTCATGTGAAATTTGATAACCTTTTC 58.349 33.333 0.00 0.00 0.00 2.29
1630 1742 8.370182 AGCTCATGTGAAATTTGATAACCTTTT 58.630 29.630 0.00 0.00 0.00 2.27
1631 1743 7.899973 AGCTCATGTGAAATTTGATAACCTTT 58.100 30.769 0.00 0.00 0.00 3.11
1632 1744 7.472334 AGCTCATGTGAAATTTGATAACCTT 57.528 32.000 0.00 0.00 0.00 3.50
1633 1745 8.049117 TCTAGCTCATGTGAAATTTGATAACCT 58.951 33.333 0.00 0.00 0.00 3.50
1634 1746 8.213518 TCTAGCTCATGTGAAATTTGATAACC 57.786 34.615 0.00 0.00 0.00 2.85
1637 1749 8.677300 GGTTTCTAGCTCATGTGAAATTTGATA 58.323 33.333 0.00 0.00 32.22 2.15
1638 1750 7.363268 GGGTTTCTAGCTCATGTGAAATTTGAT 60.363 37.037 0.00 0.00 32.22 2.57
1639 1751 6.071952 GGGTTTCTAGCTCATGTGAAATTTGA 60.072 38.462 0.00 0.00 32.22 2.69
1640 1752 6.071728 AGGGTTTCTAGCTCATGTGAAATTTG 60.072 38.462 0.00 0.00 32.22 2.32
1641 1753 6.012745 AGGGTTTCTAGCTCATGTGAAATTT 58.987 36.000 0.00 0.00 32.22 1.82
1642 1754 5.416952 CAGGGTTTCTAGCTCATGTGAAATT 59.583 40.000 0.00 0.00 32.22 1.82
1643 1755 4.946157 CAGGGTTTCTAGCTCATGTGAAAT 59.054 41.667 0.00 0.00 32.22 2.17
1644 1756 4.202461 ACAGGGTTTCTAGCTCATGTGAAA 60.202 41.667 0.00 0.00 0.00 2.69
1645 1757 3.327757 ACAGGGTTTCTAGCTCATGTGAA 59.672 43.478 0.00 0.00 0.00 3.18
1646 1758 2.906389 ACAGGGTTTCTAGCTCATGTGA 59.094 45.455 0.00 0.00 0.00 3.58
1647 1759 3.340814 ACAGGGTTTCTAGCTCATGTG 57.659 47.619 0.00 0.00 0.00 3.21
1648 1760 4.532521 AGTTACAGGGTTTCTAGCTCATGT 59.467 41.667 0.00 0.00 0.00 3.21
1649 1761 5.091261 AGTTACAGGGTTTCTAGCTCATG 57.909 43.478 0.00 0.00 0.00 3.07
1650 1762 4.777896 TGAGTTACAGGGTTTCTAGCTCAT 59.222 41.667 0.00 0.00 0.00 2.90
1651 1763 4.157246 TGAGTTACAGGGTTTCTAGCTCA 58.843 43.478 0.00 0.00 0.00 4.26
1652 1764 4.803098 TGAGTTACAGGGTTTCTAGCTC 57.197 45.455 0.00 0.00 0.00 4.09
1653 1765 5.763876 ATTGAGTTACAGGGTTTCTAGCT 57.236 39.130 0.00 0.00 0.00 3.32
1654 1766 7.916914 TTAATTGAGTTACAGGGTTTCTAGC 57.083 36.000 0.00 0.00 0.00 3.42
1655 1767 9.503399 ACTTTAATTGAGTTACAGGGTTTCTAG 57.497 33.333 0.00 0.00 0.00 2.43
1656 1768 9.498176 GACTTTAATTGAGTTACAGGGTTTCTA 57.502 33.333 0.00 0.00 0.00 2.10
1657 1769 7.172703 CGACTTTAATTGAGTTACAGGGTTTCT 59.827 37.037 0.00 0.00 0.00 2.52
1658 1770 7.295930 CGACTTTAATTGAGTTACAGGGTTTC 58.704 38.462 0.00 0.00 0.00 2.78
1659 1771 6.293790 GCGACTTTAATTGAGTTACAGGGTTT 60.294 38.462 0.00 0.00 0.00 3.27
1660 1772 5.180680 GCGACTTTAATTGAGTTACAGGGTT 59.819 40.000 0.00 0.00 0.00 4.11
1661 1773 4.694037 GCGACTTTAATTGAGTTACAGGGT 59.306 41.667 0.00 0.00 0.00 4.34
1674 1786 5.940192 TCACATGACAAAGCGACTTTAAT 57.060 34.783 0.00 0.00 31.96 1.40
1681 1793 2.493035 ACACATCACATGACAAAGCGA 58.507 42.857 0.00 0.00 0.00 4.93
1693 1805 6.915544 ATGACAGATCAACATACACATCAC 57.084 37.500 0.00 0.00 38.69 3.06
1697 1809 5.359756 GCCTATGACAGATCAACATACACA 58.640 41.667 0.00 0.00 38.69 3.72
1700 1812 4.960938 TGGCCTATGACAGATCAACATAC 58.039 43.478 3.32 0.00 38.69 2.39
1726 1839 5.526115 CATACTAAAATGCCAGCCTTCATG 58.474 41.667 0.00 0.00 0.00 3.07
1760 1873 8.960591 CACCCATGAACTTATCTAATCAAAAGT 58.039 33.333 0.00 0.00 33.72 2.66
1761 1874 7.917505 GCACCCATGAACTTATCTAATCAAAAG 59.082 37.037 0.00 0.00 0.00 2.27
1804 1919 7.757097 ACTTCATCATCGTTGATACTGTTAC 57.243 36.000 8.61 0.00 40.70 2.50
1836 1951 4.622313 CAGCATAAGAATTCAAAAAGCGCA 59.378 37.500 11.47 0.00 0.00 6.09
1837 1952 4.032104 CCAGCATAAGAATTCAAAAAGCGC 59.968 41.667 8.44 0.00 0.00 5.92
1874 2053 9.461312 AGATAACACCAACTTGCTTATTTCATA 57.539 29.630 0.00 0.00 0.00 2.15
1877 2056 7.903431 CGTAGATAACACCAACTTGCTTATTTC 59.097 37.037 0.00 0.00 0.00 2.17
1880 2059 5.293569 GCGTAGATAACACCAACTTGCTTAT 59.706 40.000 0.00 0.00 0.00 1.73
1901 2080 5.172934 TGGTCTAAACTCAATATTTCGCGT 58.827 37.500 5.77 0.00 0.00 6.01
1902 2081 5.712217 TGGTCTAAACTCAATATTTCGCG 57.288 39.130 0.00 0.00 0.00 5.87
1931 2110 4.433805 GGACGTGCTTTATTGTACAAGTCG 60.434 45.833 14.65 11.11 40.81 4.18
1943 2122 0.948678 GCAAAGGTGGACGTGCTTTA 59.051 50.000 8.99 0.00 33.72 1.85
1950 2129 3.423154 GAGCGGCAAAGGTGGACG 61.423 66.667 1.45 0.00 0.00 4.79
1952 2131 1.896660 GTTGAGCGGCAAAGGTGGA 60.897 57.895 1.45 0.00 38.44 4.02
1962 2141 0.868406 GAACAGAACCAGTTGAGCGG 59.132 55.000 0.00 0.00 0.00 5.52
2029 2208 8.885494 AGTTCTTTTATTTGCAAGCAATAACA 57.115 26.923 8.46 0.00 35.70 2.41
2033 2212 7.927629 TCAAGAGTTCTTTTATTTGCAAGCAAT 59.072 29.630 8.46 2.18 33.07 3.56
2053 2232 6.018589 TCATAGTGTGTCAAGAGTCAAGAG 57.981 41.667 0.00 0.00 0.00 2.85
2072 2251 6.045072 ACCTGAAATACACCGAAACTCATA 57.955 37.500 0.00 0.00 0.00 2.15
2227 2406 5.105064 CCCTTCTCCTTTACGGATTTCAGTA 60.105 44.000 0.00 0.00 42.12 2.74
2284 2463 2.175202 GCAGTCTTCTTCTCCCTCAGA 58.825 52.381 0.00 0.00 0.00 3.27
2312 2491 3.068590 AGTGTTTCCATGTCAAAAGGCTG 59.931 43.478 0.00 0.00 0.00 4.85
2314 2493 3.733443 AGTGTTTCCATGTCAAAAGGC 57.267 42.857 0.00 0.00 0.00 4.35
2317 2496 5.298276 GTGTCCTAGTGTTTCCATGTCAAAA 59.702 40.000 0.00 0.00 0.00 2.44
2470 2649 6.288294 TGATTTTCCCGATATAGTTGGAGTG 58.712 40.000 0.00 0.00 32.46 3.51
2476 2655 9.689501 TTAACCTTTGATTTTCCCGATATAGTT 57.310 29.630 0.00 0.00 0.00 2.24
2491 2670 3.655777 TGTCCCTGGACTTAACCTTTGAT 59.344 43.478 16.81 0.00 44.80 2.57
2518 2697 5.772521 TCCTTGTGCTTTTTATGCTTCTTC 58.227 37.500 0.00 0.00 0.00 2.87
2541 2720 4.200092 GTGTTCCTTGTCCTTGTCTTTCT 58.800 43.478 0.00 0.00 0.00 2.52
2563 2742 1.001487 TGGCGATGTTTGTGCTTCTTG 60.001 47.619 0.00 0.00 0.00 3.02
2602 2781 9.667107 TTCTCTTTCTCTTTGTCTTTGTCTTTA 57.333 29.630 0.00 0.00 0.00 1.85
2647 2832 4.962155 TGTCTTTGTCTTTCTCCTTCTCC 58.038 43.478 0.00 0.00 0.00 3.71
2698 2895 1.335810 CCTCCCAAATCATGATGCACG 59.664 52.381 9.46 0.00 0.00 5.34
2772 2969 9.961265 AAATATGAGTCAACATCATGCTATTTG 57.039 29.630 0.00 0.00 37.91 2.32
2785 2982 5.973565 GTGCATAGCCAAAATATGAGTCAAC 59.026 40.000 0.00 0.00 33.30 3.18
2786 2983 5.887598 AGTGCATAGCCAAAATATGAGTCAA 59.112 36.000 0.00 0.00 33.30 3.18
2824 3021 8.834465 CCATCATGTTTCCTCTTCTATACAAAG 58.166 37.037 0.00 0.00 0.00 2.77
2848 3047 1.338579 GCCGCCAAATTTTCCATTCCA 60.339 47.619 0.00 0.00 0.00 3.53
2927 3126 6.894103 AGGACAGAAGCATTATTGAAGGAAAT 59.106 34.615 0.00 0.00 0.00 2.17
2946 3149 2.806244 CAACAAGGAACGGTAAGGACAG 59.194 50.000 0.00 0.00 0.00 3.51
2957 3163 6.316140 TGTGCTGTCATATATCAACAAGGAAC 59.684 38.462 0.49 0.00 0.00 3.62
3010 3216 2.614983 TCTTACGCCAAACAAAGTCCAC 59.385 45.455 0.00 0.00 0.00 4.02
3098 3304 6.486993 GGTATTGACAAGAAAACCTTCAGAGT 59.513 38.462 0.00 0.00 33.64 3.24
3160 3366 8.658609 CAAACTGAAATCAAACAACAACAGATT 58.341 29.630 0.00 0.00 0.00 2.40
3167 3373 5.866633 GGACACAAACTGAAATCAAACAACA 59.133 36.000 0.00 0.00 0.00 3.33
3278 3484 6.690194 ATAAAAGGCATTCTTCACTAGCAG 57.310 37.500 0.00 0.00 33.94 4.24
3287 3493 7.978099 AAGGAACCATATAAAAGGCATTCTT 57.022 32.000 0.00 0.00 37.28 2.52
3315 3521 3.745799 TCCAAAGCCGAAAGACACAATA 58.254 40.909 0.00 0.00 0.00 1.90
3325 3531 1.530323 GCCTTAGTTCCAAAGCCGAA 58.470 50.000 0.00 0.00 0.00 4.30
3339 3545 2.304761 AGACGGAGAAAATGTGGCCTTA 59.695 45.455 3.32 0.00 0.00 2.69
3464 3670 7.962441 ACAATAAATTGGCCAAAGTTCTAACT 58.038 30.769 24.71 0.00 41.96 2.24
3475 3681 4.526262 ACAGCAAGTACAATAAATTGGCCA 59.474 37.500 0.00 0.00 41.96 5.36
3503 3709 5.983720 GGCATGTGTAATAACTCGACTATGT 59.016 40.000 0.00 0.00 0.00 2.29
3523 3729 0.250727 AGCAACCACTACAACGGCAT 60.251 50.000 0.00 0.00 0.00 4.40
3528 3734 5.163754 GGATACAATCAGCAACCACTACAAC 60.164 44.000 0.00 0.00 0.00 3.32
3541 3758 4.848357 ACCCAACTCAAGGATACAATCAG 58.152 43.478 0.00 0.00 41.41 2.90
3547 3764 4.423625 AGCATACCCAACTCAAGGATAC 57.576 45.455 0.00 0.00 0.00 2.24
3548 3765 5.513094 GCATAGCATACCCAACTCAAGGATA 60.513 44.000 0.00 0.00 0.00 2.59
3576 3966 1.496429 CCAACTTATCCCTCCCAGCAT 59.504 52.381 0.00 0.00 0.00 3.79
3672 4062 1.004918 CTCGAAGGCGGAAACTGGT 60.005 57.895 0.00 0.00 38.28 4.00
3688 4078 1.070289 AGTTGTCCCGGAGTTTCACTC 59.930 52.381 0.73 0.00 44.32 3.51
3699 4089 3.250040 CAGAACACCTTAAAGTTGTCCCG 59.750 47.826 0.00 0.00 0.00 5.14
3706 4096 4.013728 TGCACAACAGAACACCTTAAAGT 58.986 39.130 0.00 0.00 0.00 2.66
3715 4105 1.334556 GCTGACATGCACAACAGAACA 59.665 47.619 16.46 0.00 32.90 3.18
3795 4192 8.311650 ACTTCACAAAACATCTAGTACACATC 57.688 34.615 0.00 0.00 0.00 3.06
3814 4211 1.227853 AACGGCTGGGTGACTTCAC 60.228 57.895 0.00 0.34 45.72 3.18
3815 4212 1.227823 CAACGGCTGGGTGACTTCA 60.228 57.895 0.00 0.00 0.00 3.02
3816 4213 0.818040 AACAACGGCTGGGTGACTTC 60.818 55.000 5.56 0.00 0.00 3.01
3817 4214 0.395173 AAACAACGGCTGGGTGACTT 60.395 50.000 5.56 0.00 0.00 3.01
3818 4215 0.470766 TAAACAACGGCTGGGTGACT 59.529 50.000 5.56 0.00 0.00 3.41
3819 4216 1.467342 GATAAACAACGGCTGGGTGAC 59.533 52.381 5.56 0.00 0.00 3.67
3820 4217 1.612199 GGATAAACAACGGCTGGGTGA 60.612 52.381 5.56 0.00 0.00 4.02
3821 4218 0.808755 GGATAAACAACGGCTGGGTG 59.191 55.000 0.00 0.00 0.00 4.61
3822 4219 0.323087 GGGATAAACAACGGCTGGGT 60.323 55.000 0.00 0.00 0.00 4.51
3823 4220 1.035385 GGGGATAAACAACGGCTGGG 61.035 60.000 0.00 0.00 0.00 4.45
3824 4221 1.035385 GGGGGATAAACAACGGCTGG 61.035 60.000 0.00 0.00 0.00 4.85
3825 4222 0.034477 AGGGGGATAAACAACGGCTG 60.034 55.000 0.00 0.00 0.00 4.85
3826 4223 0.702316 AAGGGGGATAAACAACGGCT 59.298 50.000 0.00 0.00 0.00 5.52
3827 4224 0.815095 CAAGGGGGATAAACAACGGC 59.185 55.000 0.00 0.00 0.00 5.68
3828 4225 1.470051 CCAAGGGGGATAAACAACGG 58.530 55.000 0.00 0.00 40.01 4.44
3840 4237 3.027891 TCCCTAGTTTTGCCCAAGGGG 62.028 57.143 7.36 0.00 45.93 4.79
3841 4238 2.976099 CCCTAGTTTTGCCCAAGGG 58.024 57.895 0.00 0.00 40.99 3.95
3842 4239 2.532250 ATCCCTAGTTTTGCCCAAGG 57.468 50.000 0.00 0.00 0.00 3.61
3843 4240 4.890158 AAAATCCCTAGTTTTGCCCAAG 57.110 40.909 0.00 0.00 0.00 3.61
3844 4241 5.245075 CACTAAAATCCCTAGTTTTGCCCAA 59.755 40.000 0.98 0.00 31.71 4.12
3845 4242 4.770010 CACTAAAATCCCTAGTTTTGCCCA 59.230 41.667 0.98 0.00 31.71 5.36
3846 4243 4.381612 GCACTAAAATCCCTAGTTTTGCCC 60.382 45.833 0.98 0.00 31.71 5.36
3847 4244 4.462834 AGCACTAAAATCCCTAGTTTTGCC 59.537 41.667 0.98 0.00 30.48 4.52
3848 4245 5.644977 AGCACTAAAATCCCTAGTTTTGC 57.355 39.130 0.98 0.00 30.38 3.68
3852 4249 8.652290 CCTCTAATAGCACTAAAATCCCTAGTT 58.348 37.037 0.00 0.00 0.00 2.24
3853 4250 8.011290 TCCTCTAATAGCACTAAAATCCCTAGT 58.989 37.037 0.00 0.00 0.00 2.57
3854 4251 8.308207 GTCCTCTAATAGCACTAAAATCCCTAG 58.692 40.741 0.00 0.00 0.00 3.02
3855 4252 8.011290 AGTCCTCTAATAGCACTAAAATCCCTA 58.989 37.037 0.00 0.00 0.00 3.53
3856 4253 6.847036 AGTCCTCTAATAGCACTAAAATCCCT 59.153 38.462 0.00 0.00 0.00 4.20
3857 4254 7.068686 AGTCCTCTAATAGCACTAAAATCCC 57.931 40.000 0.00 0.00 0.00 3.85
3858 4255 8.204836 TGAAGTCCTCTAATAGCACTAAAATCC 58.795 37.037 0.00 0.00 0.00 3.01
3859 4256 9.771534 ATGAAGTCCTCTAATAGCACTAAAATC 57.228 33.333 0.00 0.00 0.00 2.17
3865 4262 9.989296 AGATATATGAAGTCCTCTAATAGCACT 57.011 33.333 0.00 0.00 0.00 4.40
3867 4264 9.981460 TGAGATATATGAAGTCCTCTAATAGCA 57.019 33.333 0.00 0.00 0.00 3.49
3886 4283 8.883731 GTGTTGCACTACAAATTAGTGAGATAT 58.116 33.333 14.27 0.00 45.69 1.63
3887 4284 7.875554 TGTGTTGCACTACAAATTAGTGAGATA 59.124 33.333 14.27 0.00 45.69 1.98
3888 4285 6.710295 TGTGTTGCACTACAAATTAGTGAGAT 59.290 34.615 14.27 0.00 45.69 2.75
3889 4286 6.052360 TGTGTTGCACTACAAATTAGTGAGA 58.948 36.000 14.27 0.62 45.69 3.27
3890 4287 6.299023 TGTGTTGCACTACAAATTAGTGAG 57.701 37.500 14.27 0.00 45.69 3.51
3891 4288 6.293900 CCATGTGTTGCACTACAAATTAGTGA 60.294 38.462 14.27 0.00 45.69 3.41
3892 4289 5.858049 CCATGTGTTGCACTACAAATTAGTG 59.142 40.000 6.33 7.01 45.62 2.74
3893 4290 5.534654 ACCATGTGTTGCACTACAAATTAGT 59.465 36.000 6.33 0.00 40.82 2.24
3894 4291 5.858049 CACCATGTGTTGCACTACAAATTAG 59.142 40.000 6.33 0.00 40.82 1.73
3895 4292 5.532779 TCACCATGTGTTGCACTACAAATTA 59.467 36.000 6.33 0.00 40.82 1.40
3896 4293 4.340666 TCACCATGTGTTGCACTACAAATT 59.659 37.500 6.33 0.00 40.82 1.82
3897 4294 3.888323 TCACCATGTGTTGCACTACAAAT 59.112 39.130 6.33 0.00 40.82 2.32
3898 4295 3.282885 TCACCATGTGTTGCACTACAAA 58.717 40.909 6.33 0.00 40.82 2.83
3899 4296 2.924421 TCACCATGTGTTGCACTACAA 58.076 42.857 6.33 0.00 35.11 2.41
3900 4297 2.629336 TCACCATGTGTTGCACTACA 57.371 45.000 4.83 4.83 35.11 2.74
3901 4298 4.695455 ACTAATCACCATGTGTTGCACTAC 59.305 41.667 0.00 0.00 35.11 2.73
3902 4299 4.694982 CACTAATCACCATGTGTTGCACTA 59.305 41.667 0.00 0.00 35.11 2.74
3903 4300 3.503363 CACTAATCACCATGTGTTGCACT 59.497 43.478 0.00 0.00 35.11 4.40
3904 4301 3.825308 CACTAATCACCATGTGTTGCAC 58.175 45.455 0.00 0.00 34.79 4.57
3905 4302 2.228582 GCACTAATCACCATGTGTTGCA 59.771 45.455 0.00 0.00 34.79 4.08
3906 4303 2.228582 TGCACTAATCACCATGTGTTGC 59.771 45.455 0.00 0.00 34.79 4.17
3907 4304 3.503363 ACTGCACTAATCACCATGTGTTG 59.497 43.478 0.00 0.00 34.79 3.33
3908 4305 3.503363 CACTGCACTAATCACCATGTGTT 59.497 43.478 0.00 0.00 34.79 3.32
3909 4306 3.076621 CACTGCACTAATCACCATGTGT 58.923 45.455 0.00 0.00 34.79 3.72
3910 4307 3.337358 TCACTGCACTAATCACCATGTG 58.663 45.455 0.00 0.00 34.45 3.21
3911 4308 3.701205 TCACTGCACTAATCACCATGT 57.299 42.857 0.00 0.00 0.00 3.21
3912 4309 4.637091 TCATTCACTGCACTAATCACCATG 59.363 41.667 0.00 0.00 0.00 3.66
3913 4310 4.847198 TCATTCACTGCACTAATCACCAT 58.153 39.130 0.00 0.00 0.00 3.55
3914 4311 4.284829 TCATTCACTGCACTAATCACCA 57.715 40.909 0.00 0.00 0.00 4.17
3915 4312 4.637534 ACATCATTCACTGCACTAATCACC 59.362 41.667 0.00 0.00 0.00 4.02
3916 4313 5.808042 ACATCATTCACTGCACTAATCAC 57.192 39.130 0.00 0.00 0.00 3.06
3917 4314 7.042523 CGAATACATCATTCACTGCACTAATCA 60.043 37.037 0.00 0.00 42.86 2.57
3918 4315 7.286508 CGAATACATCATTCACTGCACTAATC 58.713 38.462 0.00 0.00 42.86 1.75
3919 4316 6.203530 CCGAATACATCATTCACTGCACTAAT 59.796 38.462 0.00 0.00 42.86 1.73
3920 4317 5.523552 CCGAATACATCATTCACTGCACTAA 59.476 40.000 0.00 0.00 42.86 2.24
3921 4318 5.049828 CCGAATACATCATTCACTGCACTA 58.950 41.667 0.00 0.00 42.86 2.74
3922 4319 3.873361 CCGAATACATCATTCACTGCACT 59.127 43.478 0.00 0.00 42.86 4.40
3923 4320 3.871006 TCCGAATACATCATTCACTGCAC 59.129 43.478 0.00 0.00 42.86 4.57
3924 4321 4.135747 TCCGAATACATCATTCACTGCA 57.864 40.909 0.00 0.00 42.86 4.41
3925 4322 5.163764 TGTTTCCGAATACATCATTCACTGC 60.164 40.000 0.00 0.00 42.86 4.40
3926 4323 6.421377 TGTTTCCGAATACATCATTCACTG 57.579 37.500 0.00 0.00 42.86 3.66
3927 4324 7.390440 TCTTTGTTTCCGAATACATCATTCACT 59.610 33.333 0.00 0.00 42.86 3.41
3928 4325 7.526608 TCTTTGTTTCCGAATACATCATTCAC 58.473 34.615 0.00 0.00 42.86 3.18
3929 4326 7.680442 TCTTTGTTTCCGAATACATCATTCA 57.320 32.000 0.00 0.00 42.86 2.57
3930 4327 8.397906 TCATCTTTGTTTCCGAATACATCATTC 58.602 33.333 0.00 0.00 39.84 2.67
3931 4328 8.279970 TCATCTTTGTTTCCGAATACATCATT 57.720 30.769 0.00 0.00 0.00 2.57
3932 4329 7.864108 TCATCTTTGTTTCCGAATACATCAT 57.136 32.000 0.00 0.00 0.00 2.45
3933 4330 7.201723 CCATCATCTTTGTTTCCGAATACATCA 60.202 37.037 0.00 0.00 0.00 3.07
3934 4331 7.134815 CCATCATCTTTGTTTCCGAATACATC 58.865 38.462 0.00 0.00 0.00 3.06
3935 4332 6.460123 GCCATCATCTTTGTTTCCGAATACAT 60.460 38.462 0.00 0.00 0.00 2.29
3936 4333 5.163663 GCCATCATCTTTGTTTCCGAATACA 60.164 40.000 0.00 0.00 0.00 2.29
3937 4334 5.066505 AGCCATCATCTTTGTTTCCGAATAC 59.933 40.000 0.00 0.00 0.00 1.89
3938 4335 5.192927 AGCCATCATCTTTGTTTCCGAATA 58.807 37.500 0.00 0.00 0.00 1.75
3939 4336 4.019174 AGCCATCATCTTTGTTTCCGAAT 58.981 39.130 0.00 0.00 0.00 3.34
3940 4337 3.420893 AGCCATCATCTTTGTTTCCGAA 58.579 40.909 0.00 0.00 0.00 4.30
3941 4338 3.071874 AGCCATCATCTTTGTTTCCGA 57.928 42.857 0.00 0.00 0.00 4.55
3942 4339 3.057315 ACAAGCCATCATCTTTGTTTCCG 60.057 43.478 0.00 0.00 0.00 4.30
3943 4340 4.525912 ACAAGCCATCATCTTTGTTTCC 57.474 40.909 0.00 0.00 0.00 3.13
3944 4341 6.258507 ACAAAACAAGCCATCATCTTTGTTTC 59.741 34.615 12.75 0.00 33.05 2.78
3945 4342 6.037391 CACAAAACAAGCCATCATCTTTGTTT 59.963 34.615 8.01 8.01 34.28 2.83
3946 4343 5.524646 CACAAAACAAGCCATCATCTTTGTT 59.475 36.000 0.00 0.00 34.28 2.83
3947 4344 5.051816 CACAAAACAAGCCATCATCTTTGT 58.948 37.500 0.00 0.00 36.29 2.83
3948 4345 5.291178 TCACAAAACAAGCCATCATCTTTG 58.709 37.500 0.00 0.00 0.00 2.77
3949 4346 5.534207 TCACAAAACAAGCCATCATCTTT 57.466 34.783 0.00 0.00 0.00 2.52
3950 4347 5.733620 ATCACAAAACAAGCCATCATCTT 57.266 34.783 0.00 0.00 0.00 2.40
3951 4348 5.733620 AATCACAAAACAAGCCATCATCT 57.266 34.783 0.00 0.00 0.00 2.90
3952 4349 6.424509 TGAAAATCACAAAACAAGCCATCATC 59.575 34.615 0.00 0.00 0.00 2.92
3953 4350 6.289834 TGAAAATCACAAAACAAGCCATCAT 58.710 32.000 0.00 0.00 0.00 2.45
3954 4351 5.668471 TGAAAATCACAAAACAAGCCATCA 58.332 33.333 0.00 0.00 0.00 3.07
3955 4352 5.754890 ACTGAAAATCACAAAACAAGCCATC 59.245 36.000 0.00 0.00 0.00 3.51
3956 4353 5.673514 ACTGAAAATCACAAAACAAGCCAT 58.326 33.333 0.00 0.00 0.00 4.40
3957 4354 5.083533 ACTGAAAATCACAAAACAAGCCA 57.916 34.783 0.00 0.00 0.00 4.75
3958 4355 5.691754 CCTACTGAAAATCACAAAACAAGCC 59.308 40.000 0.00 0.00 0.00 4.35
3959 4356 5.691754 CCCTACTGAAAATCACAAAACAAGC 59.308 40.000 0.00 0.00 0.00 4.01
3960 4357 6.805713 ACCCTACTGAAAATCACAAAACAAG 58.194 36.000 0.00 0.00 0.00 3.16
3961 4358 6.783708 ACCCTACTGAAAATCACAAAACAA 57.216 33.333 0.00 0.00 0.00 2.83
3962 4359 7.883391 TTACCCTACTGAAAATCACAAAACA 57.117 32.000 0.00 0.00 0.00 2.83
3963 4360 9.589111 TTTTTACCCTACTGAAAATCACAAAAC 57.411 29.630 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.