Multiple sequence alignment - TraesCS5A01G374200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G374200 chr5A 100.000 4355 0 0 1 4355 572700160 572695806 0.000000e+00 8043.0
1 TraesCS5A01G374200 chr5A 80.851 752 132 12 2406 3151 444088565 444089310 8.120000e-162 580.0
2 TraesCS5A01G374200 chr5A 89.113 248 26 1 1 248 456631368 456631614 1.520000e-79 307.0
3 TraesCS5A01G374200 chr5B 92.798 3360 131 55 343 3615 553943563 553946898 0.000000e+00 4761.0
4 TraesCS5A01G374200 chr5B 80.293 751 138 10 2406 3151 403534546 403535291 3.800000e-155 558.0
5 TraesCS5A01G374200 chr5B 89.706 68 5 2 292 358 553942035 553942101 7.760000e-13 86.1
6 TraesCS5A01G374200 chr5B 88.462 52 2 2 262 312 553942035 553942083 4.700000e-05 60.2
7 TraesCS5A01G374200 chr5D 93.026 2036 76 24 371 2355 453412268 453414288 0.000000e+00 2913.0
8 TraesCS5A01G374200 chr5D 95.176 1223 41 7 2407 3613 453421860 453423080 0.000000e+00 1916.0
9 TraesCS5A01G374200 chr5D 79.920 752 139 12 2406 3151 343119543 343120288 3.830000e-150 542.0
10 TraesCS5A01G374200 chr5D 89.516 248 25 1 1 248 528741082 528741328 3.270000e-81 313.0
11 TraesCS5A01G374200 chr5D 96.471 85 2 1 292 376 453412106 453412189 5.870000e-29 139.0
12 TraesCS5A01G374200 chr5D 90.385 52 1 2 262 312 453412106 453412154 1.010000e-06 65.8
13 TraesCS5A01G374200 chr7D 94.453 649 36 0 3707 4355 392910575 392911223 0.000000e+00 1000.0
14 TraesCS5A01G374200 chr7D 97.500 40 1 0 3667 3706 98513727 98513688 7.820000e-08 69.4
15 TraesCS5A01G374200 chr6D 93.220 649 43 1 3708 4355 395404505 395405153 0.000000e+00 953.0
16 TraesCS5A01G374200 chr6D 93.189 646 44 0 3710 4355 338659833 338659188 0.000000e+00 950.0
17 TraesCS5A01G374200 chr6D 77.226 685 136 17 2432 3106 271086269 271085595 2.460000e-102 383.0
18 TraesCS5A01G374200 chr6D 89.744 117 10 2 3500 3615 306707743 306707858 9.760000e-32 148.0
19 TraesCS5A01G374200 chr6D 88.034 117 12 2 3500 3615 86805783 86805668 2.110000e-28 137.0
20 TraesCS5A01G374200 chr6D 95.556 45 2 0 3662 3706 266175305 266175261 6.040000e-09 73.1
21 TraesCS5A01G374200 chr4D 93.199 647 43 1 3709 4355 404609911 404609266 0.000000e+00 950.0
22 TraesCS5A01G374200 chr4D 89.919 248 24 1 1 248 450004541 450004295 7.030000e-83 318.0
23 TraesCS5A01G374200 chr4D 87.931 116 14 0 3500 3615 43667635 43667750 2.110000e-28 137.0
24 TraesCS5A01G374200 chr3D 92.901 648 46 0 3708 4355 312336011 312336658 0.000000e+00 942.0
25 TraesCS5A01G374200 chr3D 92.758 649 45 1 3707 4355 70383212 70382566 0.000000e+00 937.0
26 TraesCS5A01G374200 chr3D 92.736 647 47 0 3709 4355 445176448 445177094 0.000000e+00 935.0
27 TraesCS5A01G374200 chr3D 93.878 49 2 1 3664 3711 402336608 402336560 6.040000e-09 73.1
28 TraesCS5A01G374200 chr2D 92.890 647 44 2 3709 4355 345200140 345199496 0.000000e+00 939.0
29 TraesCS5A01G374200 chr2D 92.736 647 47 0 3709 4355 364009472 364010118 0.000000e+00 935.0
30 TraesCS5A01G374200 chr2D 90.726 248 22 1 1 248 81592497 81592743 3.250000e-86 329.0
31 TraesCS5A01G374200 chr2D 91.150 113 10 0 3503 3615 497976144 497976032 2.100000e-33 154.0
32 TraesCS5A01G374200 chr2D 90.351 114 10 1 3502 3615 23479848 23479736 9.760000e-32 148.0
33 TraesCS5A01G374200 chr2D 97.727 44 1 0 3668 3711 294691489 294691446 4.670000e-10 76.8
34 TraesCS5A01G374200 chr1A 79.920 747 140 10 2406 3147 73093601 73092860 1.380000e-149 540.0
35 TraesCS5A01G374200 chr1A 89.113 248 25 2 1 248 398105828 398106073 1.520000e-79 307.0
36 TraesCS5A01G374200 chr1D 79.652 747 142 10 2406 3147 73316438 73315697 2.980000e-146 529.0
37 TraesCS5A01G374200 chr1D 89.516 248 24 2 1 248 474420093 474419848 3.270000e-81 313.0
38 TraesCS5A01G374200 chr1D 91.379 116 10 0 3500 3615 343883228 343883113 4.510000e-35 159.0
39 TraesCS5A01G374200 chr1D 95.556 45 2 0 3662 3706 161521017 161520973 6.040000e-09 73.1
40 TraesCS5A01G374200 chr6A 77.126 682 142 13 2432 3106 384921559 384922233 2.460000e-102 383.0
41 TraesCS5A01G374200 chr6A 92.339 248 16 2 1 248 508176121 508175877 2.490000e-92 350.0
42 TraesCS5A01G374200 chr6A 95.745 47 2 0 3660 3706 372773566 372773612 4.670000e-10 76.8
43 TraesCS5A01G374200 chr7B 90.323 248 23 1 1 248 135993888 135994134 1.510000e-84 324.0
44 TraesCS5A01G374200 chr4A 90.323 248 18 4 1 248 598742247 598742488 1.950000e-83 320.0
45 TraesCS5A01G374200 chr6B 87.931 116 14 0 3500 3615 228975197 228975312 2.110000e-28 137.0
46 TraesCS5A01G374200 chr2B 91.071 56 2 3 3656 3711 455185797 455185745 6.040000e-09 73.1
47 TraesCS5A01G374200 chr2B 90.741 54 5 0 3658 3711 462155559 462155612 6.040000e-09 73.1
48 TraesCS5A01G374200 chr1B 93.617 47 3 0 3660 3706 686585959 686585913 2.170000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G374200 chr5A 572695806 572700160 4354 True 8043.000000 8043 100.000 1 4355 1 chr5A.!!$R1 4354
1 TraesCS5A01G374200 chr5A 444088565 444089310 745 False 580.000000 580 80.851 2406 3151 1 chr5A.!!$F1 745
2 TraesCS5A01G374200 chr5B 553942035 553946898 4863 False 1635.766667 4761 90.322 262 3615 3 chr5B.!!$F2 3353
3 TraesCS5A01G374200 chr5B 403534546 403535291 745 False 558.000000 558 80.293 2406 3151 1 chr5B.!!$F1 745
4 TraesCS5A01G374200 chr5D 453421860 453423080 1220 False 1916.000000 1916 95.176 2407 3613 1 chr5D.!!$F2 1206
5 TraesCS5A01G374200 chr5D 453412106 453414288 2182 False 1039.266667 2913 93.294 262 2355 3 chr5D.!!$F4 2093
6 TraesCS5A01G374200 chr5D 343119543 343120288 745 False 542.000000 542 79.920 2406 3151 1 chr5D.!!$F1 745
7 TraesCS5A01G374200 chr7D 392910575 392911223 648 False 1000.000000 1000 94.453 3707 4355 1 chr7D.!!$F1 648
8 TraesCS5A01G374200 chr6D 395404505 395405153 648 False 953.000000 953 93.220 3708 4355 1 chr6D.!!$F2 647
9 TraesCS5A01G374200 chr6D 338659188 338659833 645 True 950.000000 950 93.189 3710 4355 1 chr6D.!!$R4 645
10 TraesCS5A01G374200 chr6D 271085595 271086269 674 True 383.000000 383 77.226 2432 3106 1 chr6D.!!$R3 674
11 TraesCS5A01G374200 chr4D 404609266 404609911 645 True 950.000000 950 93.199 3709 4355 1 chr4D.!!$R1 646
12 TraesCS5A01G374200 chr3D 312336011 312336658 647 False 942.000000 942 92.901 3708 4355 1 chr3D.!!$F1 647
13 TraesCS5A01G374200 chr3D 70382566 70383212 646 True 937.000000 937 92.758 3707 4355 1 chr3D.!!$R1 648
14 TraesCS5A01G374200 chr3D 445176448 445177094 646 False 935.000000 935 92.736 3709 4355 1 chr3D.!!$F2 646
15 TraesCS5A01G374200 chr2D 345199496 345200140 644 True 939.000000 939 92.890 3709 4355 1 chr2D.!!$R3 646
16 TraesCS5A01G374200 chr2D 364009472 364010118 646 False 935.000000 935 92.736 3709 4355 1 chr2D.!!$F2 646
17 TraesCS5A01G374200 chr1A 73092860 73093601 741 True 540.000000 540 79.920 2406 3147 1 chr1A.!!$R1 741
18 TraesCS5A01G374200 chr1D 73315697 73316438 741 True 529.000000 529 79.652 2406 3147 1 chr1D.!!$R1 741
19 TraesCS5A01G374200 chr6A 384921559 384922233 674 False 383.000000 383 77.126 2432 3106 1 chr6A.!!$F2 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.032952 AAGCGACGGTTTGAGCTACA 59.967 50.000 6.44 0.0 39.25 2.74 F
48 49 0.032952 AGCGACGGTTTGAGCTACAA 59.967 50.000 0.00 0.0 38.29 2.41 F
208 209 0.250513 GAGTGGAGCAAGGATCCGTT 59.749 55.000 5.98 0.0 41.58 4.44 F
970 2605 0.463116 ACGTTTGGTTTCTGCCTCGT 60.463 50.000 0.00 0.0 0.00 4.18 F
971 2606 1.202557 ACGTTTGGTTTCTGCCTCGTA 60.203 47.619 0.00 0.0 32.94 3.43 F
1281 2922 1.220749 GCAGGACCGCATCTTGGTA 59.779 57.895 3.82 0.0 40.63 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 3634 0.904865 TTCTCGGTGATGACCTGCCT 60.905 55.000 0.00 0.00 40.58 4.75 R
2165 3806 6.146021 GCAAAATAATGTTGTCTTGTTGAGGG 59.854 38.462 0.00 0.00 0.00 4.30 R
2213 3872 0.732880 CCAGCGTACTGTTCGACCAG 60.733 60.000 8.62 8.62 42.81 4.00 R
2726 4406 1.481428 CCTCCCGGATGATGTAGGTCT 60.481 57.143 0.73 0.00 0.00 3.85 R
3237 4917 1.750399 CCCTTGATCCCGCTTGGTG 60.750 63.158 0.00 0.00 34.77 4.17 R
3498 5192 2.076100 CACACGTGTGGCACTTATCAT 58.924 47.619 35.65 0.33 42.10 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.826260 TTTTTGTGAAGACAGATTTTCAACC 57.174 32.000 0.00 0.00 35.29 3.77
27 28 4.811555 TGTGAAGACAGATTTTCAACCG 57.188 40.909 0.00 0.00 35.29 4.44
28 29 4.447290 TGTGAAGACAGATTTTCAACCGA 58.553 39.130 0.00 0.00 35.29 4.69
29 30 4.878971 TGTGAAGACAGATTTTCAACCGAA 59.121 37.500 0.00 0.00 35.29 4.30
30 31 5.007626 TGTGAAGACAGATTTTCAACCGAAG 59.992 40.000 0.00 0.00 35.29 3.79
31 32 4.024048 TGAAGACAGATTTTCAACCGAAGC 60.024 41.667 0.00 0.00 30.84 3.86
32 33 2.480419 AGACAGATTTTCAACCGAAGCG 59.520 45.455 0.00 0.00 31.28 4.68
33 34 2.478894 GACAGATTTTCAACCGAAGCGA 59.521 45.455 0.00 0.00 31.28 4.93
34 35 2.223377 ACAGATTTTCAACCGAAGCGAC 59.777 45.455 0.00 0.00 31.28 5.19
35 36 1.459592 AGATTTTCAACCGAAGCGACG 59.540 47.619 0.00 0.00 31.28 5.12
42 43 3.156334 CCGAAGCGACGGTTTGAG 58.844 61.111 24.89 14.14 46.70 3.02
43 44 2.470286 CGAAGCGACGGTTTGAGC 59.530 61.111 19.91 3.86 0.00 4.26
44 45 2.022129 CGAAGCGACGGTTTGAGCT 61.022 57.895 19.91 0.00 42.35 4.09
45 46 0.731514 CGAAGCGACGGTTTGAGCTA 60.732 55.000 19.91 0.00 39.25 3.32
46 47 0.714439 GAAGCGACGGTTTGAGCTAC 59.286 55.000 14.21 0.00 39.25 3.58
47 48 0.032952 AAGCGACGGTTTGAGCTACA 59.967 50.000 6.44 0.00 39.25 2.74
48 49 0.032952 AGCGACGGTTTGAGCTACAA 59.967 50.000 0.00 0.00 38.29 2.41
49 50 0.863144 GCGACGGTTTGAGCTACAAA 59.137 50.000 0.00 7.09 44.79 2.83
89 90 9.519191 TGAAAAATGAAAGAATCTAGGATGACA 57.481 29.630 0.00 0.00 0.00 3.58
92 93 9.690913 AAAATGAAAGAATCTAGGATGACATCA 57.309 29.630 17.08 0.00 0.00 3.07
93 94 9.690913 AAATGAAAGAATCTAGGATGACATCAA 57.309 29.630 17.08 3.91 0.00 2.57
94 95 8.674263 ATGAAAGAATCTAGGATGACATCAAC 57.326 34.615 17.08 0.88 0.00 3.18
95 96 7.855375 TGAAAGAATCTAGGATGACATCAACT 58.145 34.615 17.08 8.36 0.00 3.16
96 97 8.324306 TGAAAGAATCTAGGATGACATCAACTT 58.676 33.333 17.08 7.99 0.00 2.66
97 98 9.171877 GAAAGAATCTAGGATGACATCAACTTT 57.828 33.333 17.08 14.24 0.00 2.66
98 99 9.525826 AAAGAATCTAGGATGACATCAACTTTT 57.474 29.630 17.08 5.07 0.00 2.27
99 100 8.729805 AGAATCTAGGATGACATCAACTTTTC 57.270 34.615 17.08 12.69 0.00 2.29
100 101 7.493971 AGAATCTAGGATGACATCAACTTTTCG 59.506 37.037 17.08 0.00 0.00 3.46
101 102 6.037786 TCTAGGATGACATCAACTTTTCGT 57.962 37.500 17.08 0.00 0.00 3.85
102 103 6.100004 TCTAGGATGACATCAACTTTTCGTC 58.900 40.000 17.08 0.00 0.00 4.20
103 104 4.899502 AGGATGACATCAACTTTTCGTCT 58.100 39.130 17.08 0.00 0.00 4.18
104 105 5.308825 AGGATGACATCAACTTTTCGTCTT 58.691 37.500 17.08 0.00 0.00 3.01
105 106 5.765182 AGGATGACATCAACTTTTCGTCTTT 59.235 36.000 17.08 0.00 0.00 2.52
106 107 6.263168 AGGATGACATCAACTTTTCGTCTTTT 59.737 34.615 17.08 0.00 0.00 2.27
107 108 7.444183 AGGATGACATCAACTTTTCGTCTTTTA 59.556 33.333 17.08 0.00 0.00 1.52
108 109 7.746475 GGATGACATCAACTTTTCGTCTTTTAG 59.254 37.037 17.08 0.00 0.00 1.85
109 110 7.548196 TGACATCAACTTTTCGTCTTTTAGT 57.452 32.000 0.00 0.00 0.00 2.24
110 111 7.406553 TGACATCAACTTTTCGTCTTTTAGTG 58.593 34.615 0.00 0.00 0.00 2.74
111 112 6.199393 ACATCAACTTTTCGTCTTTTAGTGC 58.801 36.000 0.00 0.00 0.00 4.40
112 113 5.804692 TCAACTTTTCGTCTTTTAGTGCA 57.195 34.783 0.00 0.00 0.00 4.57
113 114 6.371809 TCAACTTTTCGTCTTTTAGTGCAT 57.628 33.333 0.00 0.00 0.00 3.96
114 115 7.485418 TCAACTTTTCGTCTTTTAGTGCATA 57.515 32.000 0.00 0.00 0.00 3.14
115 116 8.094798 TCAACTTTTCGTCTTTTAGTGCATAT 57.905 30.769 0.00 0.00 0.00 1.78
116 117 9.210329 TCAACTTTTCGTCTTTTAGTGCATATA 57.790 29.630 0.00 0.00 0.00 0.86
117 118 9.988350 CAACTTTTCGTCTTTTAGTGCATATAT 57.012 29.630 0.00 0.00 0.00 0.86
118 119 9.988350 AACTTTTCGTCTTTTAGTGCATATATG 57.012 29.630 8.45 8.45 0.00 1.78
136 137 8.899427 CATATATGCATGTAATTAGAGGGAGG 57.101 38.462 10.16 0.00 0.00 4.30
137 138 8.708378 CATATATGCATGTAATTAGAGGGAGGA 58.292 37.037 10.16 0.00 0.00 3.71
138 139 4.963318 TGCATGTAATTAGAGGGAGGAG 57.037 45.455 0.00 0.00 0.00 3.69
139 140 3.648067 TGCATGTAATTAGAGGGAGGAGG 59.352 47.826 0.00 0.00 0.00 4.30
140 141 3.008485 GCATGTAATTAGAGGGAGGAGGG 59.992 52.174 0.00 0.00 0.00 4.30
141 142 2.690840 TGTAATTAGAGGGAGGAGGGC 58.309 52.381 0.00 0.00 0.00 5.19
142 143 2.022428 TGTAATTAGAGGGAGGAGGGCA 60.022 50.000 0.00 0.00 0.00 5.36
143 144 2.522013 AATTAGAGGGAGGAGGGCAT 57.478 50.000 0.00 0.00 0.00 4.40
144 145 1.739750 ATTAGAGGGAGGAGGGCATG 58.260 55.000 0.00 0.00 0.00 4.06
145 146 0.343372 TTAGAGGGAGGAGGGCATGT 59.657 55.000 0.00 0.00 0.00 3.21
146 147 0.399091 TAGAGGGAGGAGGGCATGTG 60.399 60.000 0.00 0.00 0.00 3.21
147 148 1.690633 GAGGGAGGAGGGCATGTGA 60.691 63.158 0.00 0.00 0.00 3.58
148 149 1.229951 AGGGAGGAGGGCATGTGAA 60.230 57.895 0.00 0.00 0.00 3.18
149 150 0.846427 AGGGAGGAGGGCATGTGAAA 60.846 55.000 0.00 0.00 0.00 2.69
150 151 0.394899 GGGAGGAGGGCATGTGAAAG 60.395 60.000 0.00 0.00 0.00 2.62
151 152 0.394899 GGAGGAGGGCATGTGAAAGG 60.395 60.000 0.00 0.00 0.00 3.11
152 153 0.620556 GAGGAGGGCATGTGAAAGGA 59.379 55.000 0.00 0.00 0.00 3.36
153 154 1.004745 GAGGAGGGCATGTGAAAGGAA 59.995 52.381 0.00 0.00 0.00 3.36
154 155 1.428912 AGGAGGGCATGTGAAAGGAAA 59.571 47.619 0.00 0.00 0.00 3.13
155 156 2.158325 AGGAGGGCATGTGAAAGGAAAA 60.158 45.455 0.00 0.00 0.00 2.29
156 157 2.833943 GGAGGGCATGTGAAAGGAAAAT 59.166 45.455 0.00 0.00 0.00 1.82
157 158 3.261643 GGAGGGCATGTGAAAGGAAAATT 59.738 43.478 0.00 0.00 0.00 1.82
158 159 4.466015 GGAGGGCATGTGAAAGGAAAATTA 59.534 41.667 0.00 0.00 0.00 1.40
159 160 5.046663 GGAGGGCATGTGAAAGGAAAATTAA 60.047 40.000 0.00 0.00 0.00 1.40
160 161 6.352137 GGAGGGCATGTGAAAGGAAAATTAAT 60.352 38.462 0.00 0.00 0.00 1.40
161 162 6.643388 AGGGCATGTGAAAGGAAAATTAATC 58.357 36.000 0.00 0.00 0.00 1.75
162 163 6.213195 AGGGCATGTGAAAGGAAAATTAATCA 59.787 34.615 0.00 0.00 0.00 2.57
163 164 7.049754 GGGCATGTGAAAGGAAAATTAATCAT 58.950 34.615 0.00 0.00 0.00 2.45
164 165 7.553760 GGGCATGTGAAAGGAAAATTAATCATT 59.446 33.333 0.00 0.00 0.00 2.57
165 166 8.949177 GGCATGTGAAAGGAAAATTAATCATTT 58.051 29.630 4.15 4.15 36.57 2.32
194 195 8.496707 TGCATGCATGTATATAATTAGAGTGG 57.503 34.615 26.79 0.00 0.00 4.00
195 196 8.320617 TGCATGCATGTATATAATTAGAGTGGA 58.679 33.333 26.79 0.00 0.00 4.02
196 197 8.824781 GCATGCATGTATATAATTAGAGTGGAG 58.175 37.037 26.79 0.00 0.00 3.86
197 198 8.824781 CATGCATGTATATAATTAGAGTGGAGC 58.175 37.037 18.91 0.00 0.00 4.70
198 199 7.906327 TGCATGTATATAATTAGAGTGGAGCA 58.094 34.615 0.00 0.00 0.00 4.26
199 200 8.374743 TGCATGTATATAATTAGAGTGGAGCAA 58.625 33.333 0.00 0.00 0.00 3.91
200 201 8.877779 GCATGTATATAATTAGAGTGGAGCAAG 58.122 37.037 0.00 0.00 0.00 4.01
201 202 9.376075 CATGTATATAATTAGAGTGGAGCAAGG 57.624 37.037 0.00 0.00 0.00 3.61
202 203 8.721133 TGTATATAATTAGAGTGGAGCAAGGA 57.279 34.615 0.00 0.00 0.00 3.36
203 204 9.326489 TGTATATAATTAGAGTGGAGCAAGGAT 57.674 33.333 0.00 0.00 0.00 3.24
204 205 9.810545 GTATATAATTAGAGTGGAGCAAGGATC 57.189 37.037 0.00 0.00 0.00 3.36
205 206 4.429854 AATTAGAGTGGAGCAAGGATCC 57.570 45.455 2.48 2.48 38.78 3.36
206 207 1.403814 TAGAGTGGAGCAAGGATCCG 58.596 55.000 5.98 0.00 41.58 4.18
207 208 0.616111 AGAGTGGAGCAAGGATCCGT 60.616 55.000 5.98 0.00 41.58 4.69
208 209 0.250513 GAGTGGAGCAAGGATCCGTT 59.749 55.000 5.98 0.00 41.58 4.44
209 210 0.250513 AGTGGAGCAAGGATCCGTTC 59.749 55.000 5.98 0.00 41.58 3.95
210 211 0.250513 GTGGAGCAAGGATCCGTTCT 59.749 55.000 5.98 2.08 41.58 3.01
211 212 0.984230 TGGAGCAAGGATCCGTTCTT 59.016 50.000 5.98 0.00 41.58 2.52
212 213 1.339055 TGGAGCAAGGATCCGTTCTTG 60.339 52.381 5.98 6.60 41.58 3.02
215 216 3.558674 CAAGGATCCGTTCTTGCCT 57.441 52.632 5.98 0.00 34.76 4.75
216 217 2.691409 CAAGGATCCGTTCTTGCCTA 57.309 50.000 5.98 0.00 34.76 3.93
217 218 3.199880 CAAGGATCCGTTCTTGCCTAT 57.800 47.619 5.98 0.00 34.76 2.57
218 219 3.545703 CAAGGATCCGTTCTTGCCTATT 58.454 45.455 5.98 0.00 34.76 1.73
219 220 3.199880 AGGATCCGTTCTTGCCTATTG 57.800 47.619 5.98 0.00 0.00 1.90
220 221 1.604278 GGATCCGTTCTTGCCTATTGC 59.396 52.381 0.00 0.00 41.77 3.56
221 222 2.565841 GATCCGTTCTTGCCTATTGCT 58.434 47.619 0.00 0.00 42.00 3.91
222 223 3.494398 GGATCCGTTCTTGCCTATTGCTA 60.494 47.826 0.00 0.00 42.00 3.49
223 224 3.620427 TCCGTTCTTGCCTATTGCTAA 57.380 42.857 0.00 0.00 42.00 3.09
224 225 3.945346 TCCGTTCTTGCCTATTGCTAAA 58.055 40.909 0.00 0.00 42.00 1.85
225 226 4.328536 TCCGTTCTTGCCTATTGCTAAAA 58.671 39.130 0.00 0.00 42.00 1.52
226 227 4.947388 TCCGTTCTTGCCTATTGCTAAAAT 59.053 37.500 0.00 0.00 42.00 1.82
227 228 5.065988 TCCGTTCTTGCCTATTGCTAAAATC 59.934 40.000 0.00 0.00 42.00 2.17
228 229 5.273944 CGTTCTTGCCTATTGCTAAAATCC 58.726 41.667 0.00 0.00 42.00 3.01
229 230 5.273944 GTTCTTGCCTATTGCTAAAATCCG 58.726 41.667 0.00 0.00 42.00 4.18
230 231 4.776349 TCTTGCCTATTGCTAAAATCCGA 58.224 39.130 0.00 0.00 42.00 4.55
231 232 5.189928 TCTTGCCTATTGCTAAAATCCGAA 58.810 37.500 0.00 0.00 42.00 4.30
232 233 4.893424 TGCCTATTGCTAAAATCCGAAC 57.107 40.909 0.00 0.00 42.00 3.95
233 234 4.523083 TGCCTATTGCTAAAATCCGAACT 58.477 39.130 0.00 0.00 42.00 3.01
234 235 4.947388 TGCCTATTGCTAAAATCCGAACTT 59.053 37.500 0.00 0.00 42.00 2.66
235 236 5.417580 TGCCTATTGCTAAAATCCGAACTTT 59.582 36.000 0.00 0.00 42.00 2.66
236 237 6.071616 TGCCTATTGCTAAAATCCGAACTTTT 60.072 34.615 0.00 0.00 42.00 2.27
237 238 6.253512 GCCTATTGCTAAAATCCGAACTTTTG 59.746 38.462 0.00 0.00 36.87 2.44
238 239 7.535139 CCTATTGCTAAAATCCGAACTTTTGA 58.465 34.615 0.00 0.00 0.00 2.69
239 240 8.190784 CCTATTGCTAAAATCCGAACTTTTGAT 58.809 33.333 0.00 0.00 0.00 2.57
242 243 7.681939 TGCTAAAATCCGAACTTTTGATAGT 57.318 32.000 0.00 0.00 0.00 2.12
243 244 8.106247 TGCTAAAATCCGAACTTTTGATAGTT 57.894 30.769 0.00 0.00 40.92 2.24
244 245 9.221933 TGCTAAAATCCGAACTTTTGATAGTTA 57.778 29.630 0.00 0.00 38.43 2.24
250 251 8.958119 ATCCGAACTTTTGATAGTTATAAGCA 57.042 30.769 0.00 0.00 38.43 3.91
251 252 8.958119 TCCGAACTTTTGATAGTTATAAGCAT 57.042 30.769 0.00 0.00 38.43 3.79
252 253 9.042008 TCCGAACTTTTGATAGTTATAAGCATC 57.958 33.333 0.00 0.00 38.43 3.91
253 254 8.283291 CCGAACTTTTGATAGTTATAAGCATCC 58.717 37.037 0.00 0.00 38.43 3.51
254 255 8.826710 CGAACTTTTGATAGTTATAAGCATCCA 58.173 33.333 0.00 0.00 38.43 3.41
257 258 9.632638 ACTTTTGATAGTTATAAGCATCCATGT 57.367 29.630 0.00 0.00 0.00 3.21
260 261 8.978874 TTGATAGTTATAAGCATCCATGTTGT 57.021 30.769 0.00 0.00 0.00 3.32
292 293 6.041511 TGAATTTTCAGTGACCATGTTGTTG 58.958 36.000 0.00 0.00 32.50 3.33
294 295 5.398603 TTTTCAGTGACCATGTTGTTGTT 57.601 34.783 0.00 0.00 0.00 2.83
295 296 6.516739 TTTTCAGTGACCATGTTGTTGTTA 57.483 33.333 0.00 0.00 0.00 2.41
296 297 6.707440 TTTCAGTGACCATGTTGTTGTTAT 57.293 33.333 0.00 0.00 0.00 1.89
297 298 5.940192 TCAGTGACCATGTTGTTGTTATC 57.060 39.130 0.00 0.00 0.00 1.75
298 299 5.620206 TCAGTGACCATGTTGTTGTTATCT 58.380 37.500 0.00 0.00 0.00 1.98
299 300 5.469760 TCAGTGACCATGTTGTTGTTATCTG 59.530 40.000 0.00 0.00 0.00 2.90
300 301 5.469760 CAGTGACCATGTTGTTGTTATCTGA 59.530 40.000 0.00 0.00 0.00 3.27
301 302 6.017192 CAGTGACCATGTTGTTGTTATCTGAA 60.017 38.462 0.00 0.00 0.00 3.02
302 303 6.716628 AGTGACCATGTTGTTGTTATCTGAAT 59.283 34.615 0.00 0.00 0.00 2.57
303 304 7.231317 AGTGACCATGTTGTTGTTATCTGAATT 59.769 33.333 0.00 0.00 0.00 2.17
304 305 7.867403 GTGACCATGTTGTTGTTATCTGAATTT 59.133 33.333 0.00 0.00 0.00 1.82
305 306 8.420222 TGACCATGTTGTTGTTATCTGAATTTT 58.580 29.630 0.00 0.00 0.00 1.82
306 307 8.816640 ACCATGTTGTTGTTATCTGAATTTTC 57.183 30.769 0.00 0.00 0.00 2.29
307 308 8.420222 ACCATGTTGTTGTTATCTGAATTTTCA 58.580 29.630 0.00 0.00 35.57 2.69
320 321 5.850557 TGAATTTTCAGTGACCATGTTGT 57.149 34.783 0.00 0.00 32.50 3.32
321 322 6.219417 TGAATTTTCAGTGACCATGTTGTT 57.781 33.333 0.00 0.00 32.50 2.83
322 323 6.041511 TGAATTTTCAGTGACCATGTTGTTG 58.958 36.000 0.00 0.00 32.50 3.33
323 324 5.596836 ATTTTCAGTGACCATGTTGTTGT 57.403 34.783 0.00 0.00 0.00 3.32
324 325 4.630894 TTTCAGTGACCATGTTGTTGTC 57.369 40.909 0.00 0.00 0.00 3.18
325 326 3.558931 TCAGTGACCATGTTGTTGTCT 57.441 42.857 0.00 0.00 0.00 3.41
326 327 3.205338 TCAGTGACCATGTTGTTGTCTG 58.795 45.455 0.00 0.00 0.00 3.51
327 328 3.118445 TCAGTGACCATGTTGTTGTCTGA 60.118 43.478 0.00 0.00 0.00 3.27
328 329 3.627123 CAGTGACCATGTTGTTGTCTGAA 59.373 43.478 0.00 0.00 0.00 3.02
329 330 4.276678 CAGTGACCATGTTGTTGTCTGAAT 59.723 41.667 0.00 0.00 0.00 2.57
376 1855 4.185467 AGCTGATGCCGATGAATACTAG 57.815 45.455 0.00 0.00 40.80 2.57
557 2120 2.539750 GCGAGCGATTGGGATTTTCTTC 60.540 50.000 0.00 0.00 0.00 2.87
581 2148 3.695357 TCTGATGAATGAGAGGGGAGA 57.305 47.619 0.00 0.00 0.00 3.71
582 2149 4.210611 TCTGATGAATGAGAGGGGAGAT 57.789 45.455 0.00 0.00 0.00 2.75
583 2150 4.564799 TCTGATGAATGAGAGGGGAGATT 58.435 43.478 0.00 0.00 0.00 2.40
584 2151 5.720162 TCTGATGAATGAGAGGGGAGATTA 58.280 41.667 0.00 0.00 0.00 1.75
595 2162 3.885901 GAGGGGAGATTAATTGCAGGTTC 59.114 47.826 0.00 0.00 0.00 3.62
611 2178 1.745115 TTCGCCTTCTTGCCATCCG 60.745 57.895 0.00 0.00 0.00 4.18
647 2214 9.590451 CTTCTTGTTGTTCTTATTACGGGTATA 57.410 33.333 0.00 0.00 0.00 1.47
675 2257 2.533266 TGCAGATAGGAATTCTCGGC 57.467 50.000 5.23 8.21 0.00 5.54
678 2260 2.869636 GCAGATAGGAATTCTCGGCTGG 60.870 54.545 5.23 0.00 0.00 4.85
681 2263 2.981859 TAGGAATTCTCGGCTGGTTC 57.018 50.000 5.23 0.00 0.00 3.62
781 2368 3.754850 CACAGTGCTCTGAATGAATGGAA 59.245 43.478 21.96 0.00 43.76 3.53
782 2369 4.398358 CACAGTGCTCTGAATGAATGGAAT 59.602 41.667 21.96 0.00 43.76 3.01
783 2370 4.639310 ACAGTGCTCTGAATGAATGGAATC 59.361 41.667 21.96 0.00 43.76 2.52
785 2372 4.882427 AGTGCTCTGAATGAATGGAATCAG 59.118 41.667 0.00 0.00 40.46 2.90
786 2373 3.630769 TGCTCTGAATGAATGGAATCAGC 59.369 43.478 0.00 0.00 39.27 4.26
789 2376 4.204799 TCTGAATGAATGGAATCAGCCAG 58.795 43.478 0.00 0.00 42.15 4.85
791 2378 1.315690 ATGAATGGAATCAGCCAGCG 58.684 50.000 0.00 0.00 42.15 5.18
871 2466 0.521735 ACGGCGGCAAGAAGAAATTC 59.478 50.000 13.24 0.00 0.00 2.17
877 2472 3.120304 GCGGCAAGAAGAAATTCGTAAGT 60.120 43.478 0.00 0.00 39.48 2.24
879 2474 5.080068 CGGCAAGAAGAAATTCGTAAGTTC 58.920 41.667 0.00 0.00 35.83 3.01
937 2559 7.914959 TCCCTTATATGATTGGTGGGGATAATA 59.085 37.037 0.00 0.00 36.92 0.98
938 2560 8.736675 CCCTTATATGATTGGTGGGGATAATAT 58.263 37.037 0.00 0.00 34.94 1.28
949 2584 5.771666 GGTGGGGATAATATATGGATGCATG 59.228 44.000 10.37 0.00 0.00 4.06
950 2585 5.771666 GTGGGGATAATATATGGATGCATGG 59.228 44.000 10.37 0.00 0.00 3.66
962 2597 2.595386 GATGCATGGACGTTTGGTTTC 58.405 47.619 2.46 0.00 0.00 2.78
970 2605 0.463116 ACGTTTGGTTTCTGCCTCGT 60.463 50.000 0.00 0.00 0.00 4.18
971 2606 1.202557 ACGTTTGGTTTCTGCCTCGTA 60.203 47.619 0.00 0.00 32.94 3.43
972 2607 2.073816 CGTTTGGTTTCTGCCTCGTAT 58.926 47.619 0.00 0.00 0.00 3.06
973 2608 3.255725 CGTTTGGTTTCTGCCTCGTATA 58.744 45.455 0.00 0.00 0.00 1.47
974 2609 3.869246 CGTTTGGTTTCTGCCTCGTATAT 59.131 43.478 0.00 0.00 0.00 0.86
975 2610 5.045215 CGTTTGGTTTCTGCCTCGTATATA 58.955 41.667 0.00 0.00 0.00 0.86
1024 2659 1.712977 GAGCGGGATGTCGTACGAGT 61.713 60.000 20.18 10.70 0.00 4.18
1034 2669 1.585521 CGTACGAGTCGTCCATGGC 60.586 63.158 23.66 0.96 41.54 4.40
1281 2922 1.220749 GCAGGACCGCATCTTGGTA 59.779 57.895 3.82 0.00 40.63 3.25
1441 3082 3.770040 CCATCTCCACCGCCGTGA 61.770 66.667 6.77 0.00 43.14 4.35
1993 3634 1.541310 GGAGTGGACCACCGTGATCA 61.541 60.000 21.32 0.00 39.42 2.92
2163 3804 5.627780 CGCCAACTTGAGGTAACAAAATTAC 59.372 40.000 0.00 0.00 41.41 1.89
2164 3805 6.514376 CGCCAACTTGAGGTAACAAAATTACT 60.514 38.462 0.00 0.00 41.41 2.24
2165 3806 6.861572 GCCAACTTGAGGTAACAAAATTACTC 59.138 38.462 0.00 0.00 41.41 2.59
2166 3807 7.368059 CCAACTTGAGGTAACAAAATTACTCC 58.632 38.462 0.00 0.00 41.41 3.85
2355 4021 9.950496 ACATTCAGGTCAACAATCTATATATCC 57.050 33.333 0.00 0.00 0.00 2.59
2375 4041 8.964476 ATATCCTAATTAATGGCGATCGAATT 57.036 30.769 21.57 18.83 0.00 2.17
2377 4043 6.227522 TCCTAATTAATGGCGATCGAATTCA 58.772 36.000 21.57 11.06 0.00 2.57
2378 4044 6.878923 TCCTAATTAATGGCGATCGAATTCAT 59.121 34.615 21.57 12.86 0.00 2.57
2383 4049 4.675190 ATGGCGATCGAATTCATCATTC 57.325 40.909 21.57 0.00 38.41 2.67
2386 4052 4.516321 TGGCGATCGAATTCATCATTCATT 59.484 37.500 21.57 0.00 41.51 2.57
2387 4053 5.084722 GGCGATCGAATTCATCATTCATTC 58.915 41.667 21.57 0.00 41.51 2.67
2389 4055 5.562998 GCGATCGAATTCATCATTCATTCAC 59.437 40.000 21.57 0.00 41.51 3.18
2390 4056 6.652245 CGATCGAATTCATCATTCATTCACA 58.348 36.000 10.26 0.00 41.51 3.58
2391 4057 7.127686 CGATCGAATTCATCATTCATTCACAA 58.872 34.615 10.26 0.00 41.51 3.33
2393 4059 7.614124 TCGAATTCATCATTCATTCACAAGA 57.386 32.000 6.22 0.00 41.51 3.02
2395 4061 8.340443 TCGAATTCATCATTCATTCACAAGATC 58.660 33.333 6.22 0.00 41.51 2.75
2396 4062 7.320560 CGAATTCATCATTCATTCACAAGATCG 59.679 37.037 6.22 0.00 41.51 3.69
2398 4064 7.614124 TTCATCATTCATTCACAAGATCGAA 57.386 32.000 0.00 0.00 0.00 3.71
2400 4066 7.858583 TCATCATTCATTCACAAGATCGAATC 58.141 34.615 0.00 0.00 29.38 2.52
2401 4067 6.277918 TCATTCATTCACAAGATCGAATCG 57.722 37.500 0.00 0.00 29.38 3.34
2402 4068 6.042143 TCATTCATTCACAAGATCGAATCGA 58.958 36.000 8.12 8.12 41.13 3.59
2403 4069 6.534793 TCATTCATTCACAAGATCGAATCGAA 59.465 34.615 10.12 0.00 39.99 3.71
3174 4854 1.372499 CCGGTCGTCGAGCTTCAAA 60.372 57.895 21.01 0.00 42.43 2.69
3352 5034 7.226128 CCGGTTGCATATAGTACTATCGAGATA 59.774 40.741 18.68 0.96 0.00 1.98
3389 5071 8.421784 ACTTTGACAGTTTGACTATTCTCTACA 58.578 33.333 0.00 0.00 27.32 2.74
3474 5168 5.721510 GCGAGAACACGAGATTCAACAATAC 60.722 44.000 0.00 0.00 35.09 1.89
3476 5170 4.625742 AGAACACGAGATTCAACAATACGG 59.374 41.667 0.00 0.00 0.00 4.02
3489 5183 6.884832 TCAACAATACGGAATAGAACCAGAT 58.115 36.000 0.00 0.00 0.00 2.90
3615 5309 5.913137 ACATGACAACTTTCTGTTTGGAA 57.087 34.783 0.00 0.00 36.63 3.53
3616 5310 5.894807 ACATGACAACTTTCTGTTTGGAAG 58.105 37.500 0.00 0.00 36.63 3.46
3617 5311 5.652014 ACATGACAACTTTCTGTTTGGAAGA 59.348 36.000 0.00 0.00 36.63 2.87
3618 5312 5.818136 TGACAACTTTCTGTTTGGAAGAG 57.182 39.130 0.00 0.00 36.63 2.85
3619 5313 5.253330 TGACAACTTTCTGTTTGGAAGAGT 58.747 37.500 0.00 0.00 36.63 3.24
3620 5314 5.123820 TGACAACTTTCTGTTTGGAAGAGTG 59.876 40.000 0.00 0.00 36.63 3.51
3621 5315 5.010282 ACAACTTTCTGTTTGGAAGAGTGT 58.990 37.500 0.00 0.00 36.63 3.55
3622 5316 5.123979 ACAACTTTCTGTTTGGAAGAGTGTC 59.876 40.000 0.00 0.00 36.63 3.67
3623 5317 3.871594 ACTTTCTGTTTGGAAGAGTGTCG 59.128 43.478 0.00 0.00 0.00 4.35
3624 5318 3.812156 TTCTGTTTGGAAGAGTGTCGA 57.188 42.857 0.00 0.00 0.00 4.20
3625 5319 4.336889 TTCTGTTTGGAAGAGTGTCGAT 57.663 40.909 0.00 0.00 0.00 3.59
3626 5320 5.462530 TTCTGTTTGGAAGAGTGTCGATA 57.537 39.130 0.00 0.00 0.00 2.92
3627 5321 5.462530 TCTGTTTGGAAGAGTGTCGATAA 57.537 39.130 0.00 0.00 0.00 1.75
3628 5322 5.470368 TCTGTTTGGAAGAGTGTCGATAAG 58.530 41.667 0.00 0.00 0.00 1.73
3629 5323 5.243060 TCTGTTTGGAAGAGTGTCGATAAGA 59.757 40.000 0.00 0.00 0.00 2.10
3630 5324 5.470368 TGTTTGGAAGAGTGTCGATAAGAG 58.530 41.667 0.00 0.00 0.00 2.85
3631 5325 5.243060 TGTTTGGAAGAGTGTCGATAAGAGA 59.757 40.000 0.00 0.00 0.00 3.10
3632 5326 4.966965 TGGAAGAGTGTCGATAAGAGAC 57.033 45.455 0.00 0.00 42.86 3.36
3633 5327 3.695060 TGGAAGAGTGTCGATAAGAGACC 59.305 47.826 0.00 0.00 43.50 3.85
3634 5328 3.242804 GGAAGAGTGTCGATAAGAGACCG 60.243 52.174 0.00 0.00 43.50 4.79
3635 5329 1.671845 AGAGTGTCGATAAGAGACCGC 59.328 52.381 0.00 0.00 43.50 5.68
3636 5330 0.739561 AGTGTCGATAAGAGACCGCC 59.260 55.000 0.00 0.00 43.50 6.13
3637 5331 0.454600 GTGTCGATAAGAGACCGCCA 59.545 55.000 0.00 0.00 37.18 5.69
3638 5332 0.454600 TGTCGATAAGAGACCGCCAC 59.545 55.000 0.00 0.00 37.80 5.01
3639 5333 0.739561 GTCGATAAGAGACCGCCACT 59.260 55.000 0.00 0.00 32.78 4.00
3640 5334 1.134560 GTCGATAAGAGACCGCCACTT 59.865 52.381 0.00 0.00 32.78 3.16
3641 5335 1.822990 TCGATAAGAGACCGCCACTTT 59.177 47.619 0.00 0.00 0.00 2.66
3642 5336 2.232941 TCGATAAGAGACCGCCACTTTT 59.767 45.455 0.00 0.00 0.00 2.27
3643 5337 2.603560 CGATAAGAGACCGCCACTTTTC 59.396 50.000 0.00 0.00 0.00 2.29
3644 5338 2.467566 TAAGAGACCGCCACTTTTCC 57.532 50.000 0.00 0.00 0.00 3.13
3645 5339 0.472471 AAGAGACCGCCACTTTTCCA 59.528 50.000 0.00 0.00 0.00 3.53
3646 5340 0.472471 AGAGACCGCCACTTTTCCAA 59.528 50.000 0.00 0.00 0.00 3.53
3647 5341 1.133915 AGAGACCGCCACTTTTCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
3648 5342 1.886542 GAGACCGCCACTTTTCCAAAT 59.113 47.619 0.00 0.00 0.00 2.32
3649 5343 2.296190 GAGACCGCCACTTTTCCAAATT 59.704 45.455 0.00 0.00 0.00 1.82
3650 5344 2.698274 AGACCGCCACTTTTCCAAATTT 59.302 40.909 0.00 0.00 0.00 1.82
3651 5345 3.892588 AGACCGCCACTTTTCCAAATTTA 59.107 39.130 0.00 0.00 0.00 1.40
3652 5346 4.342665 AGACCGCCACTTTTCCAAATTTAA 59.657 37.500 0.00 0.00 0.00 1.52
3653 5347 5.011635 AGACCGCCACTTTTCCAAATTTAAT 59.988 36.000 0.00 0.00 0.00 1.40
3654 5348 5.616270 ACCGCCACTTTTCCAAATTTAATT 58.384 33.333 0.00 0.00 0.00 1.40
3655 5349 6.058833 ACCGCCACTTTTCCAAATTTAATTT 58.941 32.000 0.00 0.00 0.00 1.82
3656 5350 6.017523 ACCGCCACTTTTCCAAATTTAATTTG 60.018 34.615 19.99 19.99 46.98 2.32
3674 5368 8.648557 TTAATTTGATATGAGAAGAGTGTCGG 57.351 34.615 0.00 0.00 0.00 4.79
3675 5369 5.661056 TTTGATATGAGAAGAGTGTCGGT 57.339 39.130 0.00 0.00 0.00 4.69
3676 5370 4.639135 TGATATGAGAAGAGTGTCGGTG 57.361 45.455 0.00 0.00 0.00 4.94
3677 5371 4.017126 TGATATGAGAAGAGTGTCGGTGT 58.983 43.478 0.00 0.00 0.00 4.16
3678 5372 4.096532 TGATATGAGAAGAGTGTCGGTGTC 59.903 45.833 0.00 0.00 0.00 3.67
3679 5373 1.687563 TGAGAAGAGTGTCGGTGTCA 58.312 50.000 0.00 0.00 0.00 3.58
3680 5374 2.028876 TGAGAAGAGTGTCGGTGTCAA 58.971 47.619 0.00 0.00 0.00 3.18
3681 5375 2.429250 TGAGAAGAGTGTCGGTGTCAAA 59.571 45.455 0.00 0.00 0.00 2.69
3682 5376 3.118920 TGAGAAGAGTGTCGGTGTCAAAA 60.119 43.478 0.00 0.00 0.00 2.44
3683 5377 3.195661 AGAAGAGTGTCGGTGTCAAAAC 58.804 45.455 0.00 0.00 0.00 2.43
3684 5378 1.949465 AGAGTGTCGGTGTCAAAACC 58.051 50.000 0.00 0.00 36.82 3.27
3690 5384 2.592287 GGTGTCAAAACCGGCCGA 60.592 61.111 30.73 0.90 0.00 5.54
3691 5385 1.969589 GGTGTCAAAACCGGCCGAT 60.970 57.895 30.73 6.36 0.00 4.18
3692 5386 1.500396 GTGTCAAAACCGGCCGATC 59.500 57.895 30.73 8.82 0.00 3.69
3693 5387 0.953960 GTGTCAAAACCGGCCGATCT 60.954 55.000 30.73 7.34 0.00 2.75
3694 5388 0.672401 TGTCAAAACCGGCCGATCTC 60.672 55.000 30.73 10.48 0.00 2.75
3695 5389 1.447140 TCAAAACCGGCCGATCTCG 60.447 57.895 30.73 12.43 39.44 4.04
3696 5390 1.447140 CAAAACCGGCCGATCTCGA 60.447 57.895 30.73 0.00 43.02 4.04
3697 5391 1.153628 AAAACCGGCCGATCTCGAG 60.154 57.895 30.73 10.69 43.02 4.04
3698 5392 1.885163 AAAACCGGCCGATCTCGAGT 61.885 55.000 30.73 11.48 43.02 4.18
3699 5393 1.033746 AAACCGGCCGATCTCGAGTA 61.034 55.000 30.73 0.00 43.02 2.59
3700 5394 1.445716 AACCGGCCGATCTCGAGTAG 61.446 60.000 30.73 8.09 43.02 2.57
3701 5395 2.618219 CCGGCCGATCTCGAGTAGG 61.618 68.421 30.73 14.66 43.02 3.18
3702 5396 2.618219 CGGCCGATCTCGAGTAGGG 61.618 68.421 24.07 12.51 43.02 3.53
3703 5397 2.269529 GGCCGATCTCGAGTAGGGG 61.270 68.421 13.13 10.76 43.02 4.79
3704 5398 2.269529 GCCGATCTCGAGTAGGGGG 61.270 68.421 13.13 9.05 43.02 5.40
3705 5399 1.150992 CCGATCTCGAGTAGGGGGT 59.849 63.158 13.13 0.00 43.02 4.95
3763 5457 2.513897 GCTATGTGACGTGGGCCC 60.514 66.667 17.59 17.59 0.00 5.80
3803 5498 7.993183 TGAAGATACAAGACAAAAGACTTCCTT 59.007 33.333 0.00 0.00 36.47 3.36
3900 5595 2.040813 ACCGACTCTGTACAACCCTAGA 59.959 50.000 0.00 0.00 0.00 2.43
3948 5644 2.614779 GGTTTAGTCCGTAGAGGCAAC 58.385 52.381 0.00 0.00 40.77 4.17
4017 5713 6.931838 TCGTGGTAGATCAACTCTTGTAATT 58.068 36.000 0.00 0.00 35.28 1.40
4098 5794 1.467342 GAACCTGGGTAAACATCGTGC 59.533 52.381 0.00 0.00 0.00 5.34
4103 5799 1.301954 GGTAAACATCGTGCCCCCT 59.698 57.895 0.00 0.00 0.00 4.79
4135 5831 1.403647 CCATCGACCTTAGACGCACAA 60.404 52.381 0.00 0.00 0.00 3.33
4159 5855 1.542679 GACCCCCTACCCGAGATCT 59.457 63.158 0.00 0.00 0.00 2.75
4160 5856 0.776176 GACCCCCTACCCGAGATCTA 59.224 60.000 0.00 0.00 0.00 1.98
4191 5887 1.686355 ACCGACATTGGTGCTTTCAA 58.314 45.000 0.00 0.00 41.85 2.69
4205 5901 3.448660 TGCTTTCAATGAGAGAGATCCGA 59.551 43.478 4.86 0.00 30.18 4.55
4232 5928 1.134560 GTCGCTAGAAGGTTCGATGGT 59.865 52.381 0.00 0.00 33.37 3.55
4233 5929 1.134367 TCGCTAGAAGGTTCGATGGTG 59.866 52.381 0.00 0.00 0.00 4.17
4260 5956 6.239217 TCCATCATCTACAACAATACTGCT 57.761 37.500 0.00 0.00 0.00 4.24
4305 6001 0.673644 AGATCTTTGTGTTCGGCGGG 60.674 55.000 7.21 0.00 0.00 6.13
4309 6005 1.440938 CTTTGTGTTCGGCGGGTTCA 61.441 55.000 7.21 0.00 0.00 3.18
4318 6014 2.185867 GCGGGTTCATACTGCGGA 59.814 61.111 0.00 0.00 0.00 5.54
4337 6033 3.777925 CAACTCGCTTGGCCGTCG 61.778 66.667 0.00 0.83 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.529829 CGGTTGAAAATCTGTCTTCACAAAAA 59.470 34.615 0.00 0.00 31.41 1.94
3 4 6.033341 CGGTTGAAAATCTGTCTTCACAAAA 58.967 36.000 0.00 0.00 31.41 2.44
4 5 5.355630 TCGGTTGAAAATCTGTCTTCACAAA 59.644 36.000 0.00 0.00 31.41 2.83
5 6 4.878971 TCGGTTGAAAATCTGTCTTCACAA 59.121 37.500 0.00 0.00 31.41 3.33
6 7 4.447290 TCGGTTGAAAATCTGTCTTCACA 58.553 39.130 0.00 0.00 31.41 3.58
7 8 5.418310 TTCGGTTGAAAATCTGTCTTCAC 57.582 39.130 0.00 0.00 31.41 3.18
8 9 4.024048 GCTTCGGTTGAAAATCTGTCTTCA 60.024 41.667 0.00 0.00 32.66 3.02
9 10 4.467735 GCTTCGGTTGAAAATCTGTCTTC 58.532 43.478 0.00 0.00 32.66 2.87
10 11 3.058914 CGCTTCGGTTGAAAATCTGTCTT 60.059 43.478 0.00 0.00 32.66 3.01
11 12 2.480419 CGCTTCGGTTGAAAATCTGTCT 59.520 45.455 0.00 0.00 32.66 3.41
12 13 2.478894 TCGCTTCGGTTGAAAATCTGTC 59.521 45.455 0.00 0.00 32.66 3.51
13 14 2.223377 GTCGCTTCGGTTGAAAATCTGT 59.777 45.455 0.00 0.00 32.66 3.41
14 15 2.721797 CGTCGCTTCGGTTGAAAATCTG 60.722 50.000 0.00 0.00 32.66 2.90
15 16 1.459592 CGTCGCTTCGGTTGAAAATCT 59.540 47.619 0.00 0.00 32.66 2.40
16 17 1.463528 CCGTCGCTTCGGTTGAAAATC 60.464 52.381 8.02 0.00 44.77 2.17
17 18 0.515564 CCGTCGCTTCGGTTGAAAAT 59.484 50.000 8.02 0.00 44.77 1.82
18 19 1.935925 CCGTCGCTTCGGTTGAAAA 59.064 52.632 8.02 0.00 44.77 2.29
19 20 3.632700 CCGTCGCTTCGGTTGAAA 58.367 55.556 8.02 0.00 44.77 2.69
26 27 0.731514 TAGCTCAAACCGTCGCTTCG 60.732 55.000 0.00 0.00 34.14 3.79
27 28 0.714439 GTAGCTCAAACCGTCGCTTC 59.286 55.000 0.00 0.00 34.14 3.86
28 29 0.032952 TGTAGCTCAAACCGTCGCTT 59.967 50.000 0.00 0.00 34.14 4.68
29 30 0.032952 TTGTAGCTCAAACCGTCGCT 59.967 50.000 0.00 0.00 36.56 4.93
30 31 0.863144 TTTGTAGCTCAAACCGTCGC 59.137 50.000 0.00 0.00 40.56 5.19
31 32 3.806316 ATTTTGTAGCTCAAACCGTCG 57.194 42.857 9.83 0.00 44.39 5.12
32 33 9.615295 TTAAAATATTTTGTAGCTCAAACCGTC 57.385 29.630 21.19 0.00 44.39 4.79
33 34 9.968870 TTTAAAATATTTTGTAGCTCAAACCGT 57.031 25.926 21.19 0.00 44.39 4.83
63 64 9.519191 TGTCATCCTAGATTCTTTCATTTTTCA 57.481 29.630 0.00 0.00 0.00 2.69
66 67 9.690913 TGATGTCATCCTAGATTCTTTCATTTT 57.309 29.630 10.36 0.00 0.00 1.82
67 68 9.690913 TTGATGTCATCCTAGATTCTTTCATTT 57.309 29.630 10.36 0.00 0.00 2.32
68 69 9.118300 GTTGATGTCATCCTAGATTCTTTCATT 57.882 33.333 10.36 0.00 0.00 2.57
69 70 8.492782 AGTTGATGTCATCCTAGATTCTTTCAT 58.507 33.333 10.36 0.00 0.00 2.57
70 71 7.855375 AGTTGATGTCATCCTAGATTCTTTCA 58.145 34.615 10.36 0.00 0.00 2.69
71 72 8.729805 AAGTTGATGTCATCCTAGATTCTTTC 57.270 34.615 10.36 0.00 0.00 2.62
72 73 9.525826 AAAAGTTGATGTCATCCTAGATTCTTT 57.474 29.630 10.36 7.43 0.00 2.52
73 74 9.171877 GAAAAGTTGATGTCATCCTAGATTCTT 57.828 33.333 10.36 2.53 0.00 2.52
74 75 7.493971 CGAAAAGTTGATGTCATCCTAGATTCT 59.506 37.037 10.36 0.00 0.00 2.40
75 76 7.278868 ACGAAAAGTTGATGTCATCCTAGATTC 59.721 37.037 10.36 8.48 0.00 2.52
76 77 7.106239 ACGAAAAGTTGATGTCATCCTAGATT 58.894 34.615 10.36 0.87 0.00 2.40
77 78 6.644347 ACGAAAAGTTGATGTCATCCTAGAT 58.356 36.000 10.36 0.00 0.00 1.98
78 79 6.037786 ACGAAAAGTTGATGTCATCCTAGA 57.962 37.500 10.36 0.00 0.00 2.43
79 80 6.102663 AGACGAAAAGTTGATGTCATCCTAG 58.897 40.000 10.36 0.00 32.08 3.02
80 81 6.037786 AGACGAAAAGTTGATGTCATCCTA 57.962 37.500 10.36 0.00 32.08 2.94
81 82 4.899502 AGACGAAAAGTTGATGTCATCCT 58.100 39.130 10.36 0.00 32.08 3.24
82 83 5.613358 AAGACGAAAAGTTGATGTCATCC 57.387 39.130 10.36 0.00 32.08 3.51
83 84 8.283291 ACTAAAAGACGAAAAGTTGATGTCATC 58.717 33.333 5.83 5.83 32.08 2.92
84 85 8.070171 CACTAAAAGACGAAAAGTTGATGTCAT 58.930 33.333 0.00 0.00 32.08 3.06
85 86 7.406553 CACTAAAAGACGAAAAGTTGATGTCA 58.593 34.615 0.00 0.00 32.08 3.58
86 87 6.357240 GCACTAAAAGACGAAAAGTTGATGTC 59.643 38.462 0.00 0.00 0.00 3.06
87 88 6.183360 TGCACTAAAAGACGAAAAGTTGATGT 60.183 34.615 0.00 0.00 0.00 3.06
88 89 6.198687 TGCACTAAAAGACGAAAAGTTGATG 58.801 36.000 0.00 0.00 0.00 3.07
89 90 6.371809 TGCACTAAAAGACGAAAAGTTGAT 57.628 33.333 0.00 0.00 0.00 2.57
90 91 5.804692 TGCACTAAAAGACGAAAAGTTGA 57.195 34.783 0.00 0.00 0.00 3.18
91 92 9.988350 ATATATGCACTAAAAGACGAAAAGTTG 57.012 29.630 0.00 0.00 0.00 3.16
92 93 9.988350 CATATATGCACTAAAAGACGAAAAGTT 57.012 29.630 0.00 0.00 0.00 2.66
111 112 8.708378 TCCTCCCTCTAATTACATGCATATATG 58.292 37.037 8.45 8.45 0.00 1.78
112 113 8.860517 TCCTCCCTCTAATTACATGCATATAT 57.139 34.615 0.00 0.00 0.00 0.86
113 114 7.345653 CCTCCTCCCTCTAATTACATGCATATA 59.654 40.741 0.00 0.00 0.00 0.86
114 115 6.157645 CCTCCTCCCTCTAATTACATGCATAT 59.842 42.308 0.00 0.00 0.00 1.78
115 116 5.485353 CCTCCTCCCTCTAATTACATGCATA 59.515 44.000 0.00 0.00 0.00 3.14
116 117 4.288105 CCTCCTCCCTCTAATTACATGCAT 59.712 45.833 0.00 0.00 0.00 3.96
117 118 3.648067 CCTCCTCCCTCTAATTACATGCA 59.352 47.826 0.00 0.00 0.00 3.96
118 119 3.008485 CCCTCCTCCCTCTAATTACATGC 59.992 52.174 0.00 0.00 0.00 4.06
119 120 3.008485 GCCCTCCTCCCTCTAATTACATG 59.992 52.174 0.00 0.00 0.00 3.21
120 121 3.252351 GCCCTCCTCCCTCTAATTACAT 58.748 50.000 0.00 0.00 0.00 2.29
121 122 2.022428 TGCCCTCCTCCCTCTAATTACA 60.022 50.000 0.00 0.00 0.00 2.41
122 123 2.690840 TGCCCTCCTCCCTCTAATTAC 58.309 52.381 0.00 0.00 0.00 1.89
123 124 3.251484 CATGCCCTCCTCCCTCTAATTA 58.749 50.000 0.00 0.00 0.00 1.40
124 125 2.061061 CATGCCCTCCTCCCTCTAATT 58.939 52.381 0.00 0.00 0.00 1.40
125 126 1.061033 ACATGCCCTCCTCCCTCTAAT 60.061 52.381 0.00 0.00 0.00 1.73
126 127 0.343372 ACATGCCCTCCTCCCTCTAA 59.657 55.000 0.00 0.00 0.00 2.10
127 128 0.399091 CACATGCCCTCCTCCCTCTA 60.399 60.000 0.00 0.00 0.00 2.43
128 129 1.692042 CACATGCCCTCCTCCCTCT 60.692 63.158 0.00 0.00 0.00 3.69
129 130 1.274703 TTCACATGCCCTCCTCCCTC 61.275 60.000 0.00 0.00 0.00 4.30
130 131 0.846427 TTTCACATGCCCTCCTCCCT 60.846 55.000 0.00 0.00 0.00 4.20
131 132 0.394899 CTTTCACATGCCCTCCTCCC 60.395 60.000 0.00 0.00 0.00 4.30
132 133 0.394899 CCTTTCACATGCCCTCCTCC 60.395 60.000 0.00 0.00 0.00 4.30
133 134 0.620556 TCCTTTCACATGCCCTCCTC 59.379 55.000 0.00 0.00 0.00 3.71
134 135 1.075601 TTCCTTTCACATGCCCTCCT 58.924 50.000 0.00 0.00 0.00 3.69
135 136 1.923356 TTTCCTTTCACATGCCCTCC 58.077 50.000 0.00 0.00 0.00 4.30
136 137 4.541973 AATTTTCCTTTCACATGCCCTC 57.458 40.909 0.00 0.00 0.00 4.30
137 138 6.213195 TGATTAATTTTCCTTTCACATGCCCT 59.787 34.615 0.00 0.00 0.00 5.19
138 139 6.405538 TGATTAATTTTCCTTTCACATGCCC 58.594 36.000 0.00 0.00 0.00 5.36
139 140 8.496707 AATGATTAATTTTCCTTTCACATGCC 57.503 30.769 0.00 0.00 0.00 4.40
168 169 9.117183 CCACTCTAATTATATACATGCATGCAT 57.883 33.333 27.46 27.46 37.08 3.96
169 170 8.320617 TCCACTCTAATTATATACATGCATGCA 58.679 33.333 26.53 25.04 0.00 3.96
170 171 8.722480 TCCACTCTAATTATATACATGCATGC 57.278 34.615 26.53 11.82 0.00 4.06
171 172 8.824781 GCTCCACTCTAATTATATACATGCATG 58.175 37.037 25.09 25.09 0.00 4.06
172 173 8.542926 TGCTCCACTCTAATTATATACATGCAT 58.457 33.333 0.00 0.00 0.00 3.96
173 174 7.906327 TGCTCCACTCTAATTATATACATGCA 58.094 34.615 0.00 0.00 0.00 3.96
174 175 8.777865 TTGCTCCACTCTAATTATATACATGC 57.222 34.615 0.00 0.00 0.00 4.06
175 176 9.376075 CCTTGCTCCACTCTAATTATATACATG 57.624 37.037 0.00 0.00 0.00 3.21
176 177 9.326489 TCCTTGCTCCACTCTAATTATATACAT 57.674 33.333 0.00 0.00 0.00 2.29
177 178 8.721133 TCCTTGCTCCACTCTAATTATATACA 57.279 34.615 0.00 0.00 0.00 2.29
178 179 9.810545 GATCCTTGCTCCACTCTAATTATATAC 57.189 37.037 0.00 0.00 0.00 1.47
179 180 8.982723 GGATCCTTGCTCCACTCTAATTATATA 58.017 37.037 3.84 0.00 32.72 0.86
180 181 7.364232 CGGATCCTTGCTCCACTCTAATTATAT 60.364 40.741 10.75 0.00 32.72 0.86
181 182 6.071334 CGGATCCTTGCTCCACTCTAATTATA 60.071 42.308 10.75 0.00 32.72 0.98
182 183 5.279708 CGGATCCTTGCTCCACTCTAATTAT 60.280 44.000 10.75 0.00 32.72 1.28
183 184 4.039245 CGGATCCTTGCTCCACTCTAATTA 59.961 45.833 10.75 0.00 32.72 1.40
184 185 3.181461 CGGATCCTTGCTCCACTCTAATT 60.181 47.826 10.75 0.00 32.72 1.40
185 186 2.366916 CGGATCCTTGCTCCACTCTAAT 59.633 50.000 10.75 0.00 32.72 1.73
186 187 1.757118 CGGATCCTTGCTCCACTCTAA 59.243 52.381 10.75 0.00 32.72 2.10
187 188 1.342076 ACGGATCCTTGCTCCACTCTA 60.342 52.381 10.75 0.00 32.72 2.43
188 189 0.616111 ACGGATCCTTGCTCCACTCT 60.616 55.000 10.75 0.00 32.72 3.24
189 190 0.250513 AACGGATCCTTGCTCCACTC 59.749 55.000 10.75 0.00 32.72 3.51
190 191 0.250513 GAACGGATCCTTGCTCCACT 59.749 55.000 10.75 0.00 32.72 4.00
191 192 0.250513 AGAACGGATCCTTGCTCCAC 59.749 55.000 10.75 0.00 32.72 4.02
192 193 0.984230 AAGAACGGATCCTTGCTCCA 59.016 50.000 10.75 0.00 32.72 3.86
193 194 1.373570 CAAGAACGGATCCTTGCTCC 58.626 55.000 10.75 0.00 34.20 4.70
197 198 2.691409 TAGGCAAGAACGGATCCTTG 57.309 50.000 10.75 8.60 41.84 3.61
198 199 3.545703 CAATAGGCAAGAACGGATCCTT 58.454 45.455 10.75 0.00 0.00 3.36
199 200 2.746472 GCAATAGGCAAGAACGGATCCT 60.746 50.000 10.75 0.00 43.97 3.24
200 201 1.604278 GCAATAGGCAAGAACGGATCC 59.396 52.381 0.00 0.00 43.97 3.36
212 213 5.500645 AAGTTCGGATTTTAGCAATAGGC 57.499 39.130 0.00 0.00 45.30 3.93
213 214 7.535139 TCAAAAGTTCGGATTTTAGCAATAGG 58.465 34.615 0.00 0.00 0.00 2.57
216 217 8.739972 ACTATCAAAAGTTCGGATTTTAGCAAT 58.260 29.630 0.00 0.00 0.00 3.56
217 218 8.106247 ACTATCAAAAGTTCGGATTTTAGCAA 57.894 30.769 0.00 0.00 0.00 3.91
218 219 7.681939 ACTATCAAAAGTTCGGATTTTAGCA 57.318 32.000 0.00 0.00 0.00 3.49
224 225 9.391006 TGCTTATAACTATCAAAAGTTCGGATT 57.609 29.630 0.00 0.00 40.20 3.01
225 226 8.958119 TGCTTATAACTATCAAAAGTTCGGAT 57.042 30.769 0.00 0.00 40.20 4.18
226 227 8.958119 ATGCTTATAACTATCAAAAGTTCGGA 57.042 30.769 0.00 0.00 40.20 4.55
227 228 8.283291 GGATGCTTATAACTATCAAAAGTTCGG 58.717 37.037 0.00 0.00 40.20 4.30
228 229 8.826710 TGGATGCTTATAACTATCAAAAGTTCG 58.173 33.333 0.00 0.00 40.20 3.95
231 232 9.632638 ACATGGATGCTTATAACTATCAAAAGT 57.367 29.630 0.00 0.00 0.00 2.66
234 235 9.407380 ACAACATGGATGCTTATAACTATCAAA 57.593 29.630 0.00 0.00 0.00 2.69
235 236 8.978874 ACAACATGGATGCTTATAACTATCAA 57.021 30.769 0.00 0.00 0.00 2.57
236 237 8.839343 CAACAACATGGATGCTTATAACTATCA 58.161 33.333 0.00 0.00 0.00 2.15
237 238 8.840321 ACAACAACATGGATGCTTATAACTATC 58.160 33.333 0.00 0.00 0.00 2.08
238 239 8.752005 ACAACAACATGGATGCTTATAACTAT 57.248 30.769 0.00 0.00 0.00 2.12
239 240 8.574251 AACAACAACATGGATGCTTATAACTA 57.426 30.769 0.00 0.00 0.00 2.24
240 241 7.466746 AACAACAACATGGATGCTTATAACT 57.533 32.000 0.00 0.00 0.00 2.24
241 242 9.450807 GATAACAACAACATGGATGCTTATAAC 57.549 33.333 0.00 0.00 0.00 1.89
242 243 9.407380 AGATAACAACAACATGGATGCTTATAA 57.593 29.630 0.00 0.00 0.00 0.98
243 244 8.839343 CAGATAACAACAACATGGATGCTTATA 58.161 33.333 0.00 0.00 0.00 0.98
244 245 7.557358 TCAGATAACAACAACATGGATGCTTAT 59.443 33.333 0.00 0.00 0.00 1.73
245 246 6.883756 TCAGATAACAACAACATGGATGCTTA 59.116 34.615 0.00 0.00 0.00 3.09
246 247 5.711506 TCAGATAACAACAACATGGATGCTT 59.288 36.000 0.00 0.00 0.00 3.91
247 248 5.255687 TCAGATAACAACAACATGGATGCT 58.744 37.500 0.00 0.00 0.00 3.79
248 249 5.565592 TCAGATAACAACAACATGGATGC 57.434 39.130 0.00 0.00 0.00 3.91
249 250 8.991243 AAATTCAGATAACAACAACATGGATG 57.009 30.769 0.00 0.00 0.00 3.51
250 251 9.643693 GAAAATTCAGATAACAACAACATGGAT 57.356 29.630 0.00 0.00 0.00 3.41
251 252 8.637099 TGAAAATTCAGATAACAACAACATGGA 58.363 29.630 0.00 0.00 32.50 3.41
252 253 8.815141 TGAAAATTCAGATAACAACAACATGG 57.185 30.769 0.00 0.00 32.50 3.66
298 299 5.850557 ACAACATGGTCACTGAAAATTCA 57.149 34.783 0.00 0.00 35.57 2.57
299 300 6.042143 ACAACAACATGGTCACTGAAAATTC 58.958 36.000 0.00 0.00 0.00 2.17
300 301 5.976458 ACAACAACATGGTCACTGAAAATT 58.024 33.333 0.00 0.00 0.00 1.82
301 302 5.360714 AGACAACAACATGGTCACTGAAAAT 59.639 36.000 0.00 0.00 34.04 1.82
302 303 4.704540 AGACAACAACATGGTCACTGAAAA 59.295 37.500 0.00 0.00 34.04 2.29
303 304 4.096231 CAGACAACAACATGGTCACTGAAA 59.904 41.667 0.00 0.00 34.04 2.69
304 305 3.627123 CAGACAACAACATGGTCACTGAA 59.373 43.478 0.00 0.00 34.04 3.02
305 306 3.118445 TCAGACAACAACATGGTCACTGA 60.118 43.478 0.00 0.00 34.04 3.41
306 307 3.205338 TCAGACAACAACATGGTCACTG 58.795 45.455 0.00 0.00 34.04 3.66
307 308 3.558931 TCAGACAACAACATGGTCACT 57.441 42.857 0.00 0.00 34.04 3.41
308 309 4.836125 ATTCAGACAACAACATGGTCAC 57.164 40.909 0.00 0.00 34.04 3.67
309 310 5.850557 AAATTCAGACAACAACATGGTCA 57.149 34.783 0.00 0.00 34.04 4.02
310 311 6.509997 GCAAAAATTCAGACAACAACATGGTC 60.510 38.462 0.00 0.00 0.00 4.02
311 312 5.294060 GCAAAAATTCAGACAACAACATGGT 59.706 36.000 0.00 0.00 0.00 3.55
312 313 5.293814 TGCAAAAATTCAGACAACAACATGG 59.706 36.000 0.00 0.00 0.00 3.66
313 314 6.036300 AGTGCAAAAATTCAGACAACAACATG 59.964 34.615 0.00 0.00 0.00 3.21
314 315 6.036300 CAGTGCAAAAATTCAGACAACAACAT 59.964 34.615 0.00 0.00 0.00 2.71
315 316 5.348179 CAGTGCAAAAATTCAGACAACAACA 59.652 36.000 0.00 0.00 0.00 3.33
316 317 5.576384 TCAGTGCAAAAATTCAGACAACAAC 59.424 36.000 0.00 0.00 0.00 3.32
317 318 5.718146 TCAGTGCAAAAATTCAGACAACAA 58.282 33.333 0.00 0.00 0.00 2.83
318 319 5.321959 TCAGTGCAAAAATTCAGACAACA 57.678 34.783 0.00 0.00 0.00 3.33
319 320 4.207841 GCTCAGTGCAAAAATTCAGACAAC 59.792 41.667 0.00 0.00 42.31 3.32
320 321 4.098349 AGCTCAGTGCAAAAATTCAGACAA 59.902 37.500 0.00 0.00 45.94 3.18
321 322 3.633525 AGCTCAGTGCAAAAATTCAGACA 59.366 39.130 0.00 0.00 45.94 3.41
322 323 4.234530 AGCTCAGTGCAAAAATTCAGAC 57.765 40.909 0.00 0.00 45.94 3.51
323 324 6.384224 CATTAGCTCAGTGCAAAAATTCAGA 58.616 36.000 0.00 0.00 45.94 3.27
324 325 5.061808 GCATTAGCTCAGTGCAAAAATTCAG 59.938 40.000 11.64 0.00 45.94 3.02
325 326 4.925054 GCATTAGCTCAGTGCAAAAATTCA 59.075 37.500 11.64 0.00 45.94 2.57
326 327 4.925054 TGCATTAGCTCAGTGCAAAAATTC 59.075 37.500 15.59 0.00 44.99 2.17
327 328 4.885413 TGCATTAGCTCAGTGCAAAAATT 58.115 34.783 15.59 0.00 44.99 1.82
328 329 4.491676 CTGCATTAGCTCAGTGCAAAAAT 58.508 39.130 17.69 0.00 46.90 1.82
329 330 3.904571 CTGCATTAGCTCAGTGCAAAAA 58.095 40.909 17.69 0.00 46.90 1.94
364 1843 3.300857 CAGCGGACACTAGTATTCATCG 58.699 50.000 0.00 0.00 0.00 3.84
536 2099 1.017387 AGAAAATCCCAATCGCTCGC 58.983 50.000 0.00 0.00 0.00 5.03
537 2100 2.032178 GGAAGAAAATCCCAATCGCTCG 59.968 50.000 0.00 0.00 33.05 5.03
538 2101 3.282885 AGGAAGAAAATCCCAATCGCTC 58.717 45.455 0.00 0.00 40.59 5.03
539 2102 3.372440 AGGAAGAAAATCCCAATCGCT 57.628 42.857 0.00 0.00 40.59 4.93
557 2120 3.457380 TCCCCTCTCATTCATCAGAAAGG 59.543 47.826 0.00 0.00 37.29 3.11
611 2178 2.484889 ACAACAAGAAGCCTCTCGAAC 58.515 47.619 0.00 0.00 0.00 3.95
647 2214 8.133627 CGAGAATTCCTATCTGCAATCAAAATT 58.866 33.333 0.65 0.00 0.00 1.82
753 2340 2.174363 TTCAGAGCACTGTGGACATG 57.826 50.000 11.07 0.00 43.81 3.21
871 2466 1.860950 CATCCGGCATCTGAACTTACG 59.139 52.381 0.00 0.00 0.00 3.18
918 2540 8.884301 TCCATATATTATCCCCACCAATCATA 57.116 34.615 0.00 0.00 0.00 2.15
937 2559 2.886523 CCAAACGTCCATGCATCCATAT 59.113 45.455 0.00 0.00 0.00 1.78
938 2560 2.296792 CCAAACGTCCATGCATCCATA 58.703 47.619 0.00 0.00 0.00 2.74
942 2577 2.228822 AGAAACCAAACGTCCATGCATC 59.771 45.455 0.00 0.00 0.00 3.91
949 2584 0.591659 GAGGCAGAAACCAAACGTCC 59.408 55.000 0.00 0.00 0.00 4.79
950 2585 0.234884 CGAGGCAGAAACCAAACGTC 59.765 55.000 0.00 0.00 0.00 4.34
962 2597 5.764131 GCCTAAGCTATATATACGAGGCAG 58.236 45.833 20.78 8.13 46.09 4.85
1059 2700 4.096003 ATGTGGAAGGCGGACCGG 62.096 66.667 17.22 0.00 42.76 5.28
1276 2917 2.357760 GCGGTTGAGGCGTACCAA 60.358 61.111 6.55 0.00 39.06 3.67
1281 2922 4.626081 AAGCTGCGGTTGAGGCGT 62.626 61.111 0.00 0.00 0.00 5.68
1417 3058 3.474570 GGTGGAGATGGCGAGGCT 61.475 66.667 0.00 0.00 0.00 4.58
1441 3082 1.899437 ATGTCGAACAGGGTGCGGAT 61.899 55.000 0.00 0.00 34.96 4.18
1917 3558 1.656587 TGTAGATCTGGTTGCACCCT 58.343 50.000 5.18 0.00 37.50 4.34
1993 3634 0.904865 TTCTCGGTGATGACCTGCCT 60.905 55.000 0.00 0.00 40.58 4.75
2163 3804 6.824305 AATAATGTTGTCTTGTTGAGGGAG 57.176 37.500 0.00 0.00 0.00 4.30
2164 3805 7.432869 CAAAATAATGTTGTCTTGTTGAGGGA 58.567 34.615 0.00 0.00 0.00 4.20
2165 3806 6.146021 GCAAAATAATGTTGTCTTGTTGAGGG 59.854 38.462 0.00 0.00 0.00 4.30
2166 3807 6.925165 AGCAAAATAATGTTGTCTTGTTGAGG 59.075 34.615 0.00 0.00 0.00 3.86
2213 3872 0.732880 CCAGCGTACTGTTCGACCAG 60.733 60.000 8.62 8.62 42.81 4.00
2355 4021 7.742151 TGATGAATTCGATCGCCATTAATTAG 58.258 34.615 11.09 0.00 0.00 1.73
2358 4024 6.748333 ATGATGAATTCGATCGCCATTAAT 57.252 33.333 11.09 9.56 0.00 1.40
2360 4026 5.700373 TGAATGATGAATTCGATCGCCATTA 59.300 36.000 11.09 8.15 46.68 1.90
2361 4027 4.516321 TGAATGATGAATTCGATCGCCATT 59.484 37.500 11.09 11.02 46.68 3.16
2362 4028 4.067192 TGAATGATGAATTCGATCGCCAT 58.933 39.130 11.09 10.61 46.68 4.40
2364 4030 4.675190 ATGAATGATGAATTCGATCGCC 57.325 40.909 11.09 0.00 46.68 5.54
2365 4031 5.562998 GTGAATGAATGATGAATTCGATCGC 59.437 40.000 11.09 0.00 46.68 4.58
2366 4032 6.652245 TGTGAATGAATGATGAATTCGATCG 58.348 36.000 9.36 9.36 46.68 3.69
2368 4034 8.217131 TCTTGTGAATGAATGATGAATTCGAT 57.783 30.769 0.04 0.00 46.68 3.59
2369 4035 7.614124 TCTTGTGAATGAATGATGAATTCGA 57.386 32.000 0.04 0.00 46.68 3.71
2370 4036 7.320560 CGATCTTGTGAATGAATGATGAATTCG 59.679 37.037 0.04 0.00 46.68 3.34
2371 4037 8.340443 TCGATCTTGTGAATGAATGATGAATTC 58.660 33.333 0.00 0.00 44.37 2.17
2372 4038 8.217131 TCGATCTTGTGAATGAATGATGAATT 57.783 30.769 0.00 0.00 0.00 2.17
2373 4039 7.797038 TCGATCTTGTGAATGAATGATGAAT 57.203 32.000 0.00 0.00 0.00 2.57
2375 4041 7.306983 CGATTCGATCTTGTGAATGAATGATGA 60.307 37.037 0.00 0.00 35.06 2.92
2377 4043 6.703165 TCGATTCGATCTTGTGAATGAATGAT 59.297 34.615 4.29 0.00 35.06 2.45
2378 4044 6.042143 TCGATTCGATCTTGTGAATGAATGA 58.958 36.000 4.29 0.00 35.06 2.57
2383 4049 5.394613 GCAATTCGATTCGATCTTGTGAATG 59.605 40.000 22.33 8.64 35.06 2.67
2386 4052 3.932089 TGCAATTCGATTCGATCTTGTGA 59.068 39.130 22.33 13.09 35.23 3.58
2387 4053 4.033243 TCTGCAATTCGATTCGATCTTGTG 59.967 41.667 22.33 17.76 35.23 3.33
2389 4055 4.512657 GTCTGCAATTCGATTCGATCTTG 58.487 43.478 19.56 19.56 35.23 3.02
2390 4056 3.243877 CGTCTGCAATTCGATTCGATCTT 59.756 43.478 9.96 4.24 35.23 2.40
2391 4057 2.791560 CGTCTGCAATTCGATTCGATCT 59.208 45.455 9.96 0.00 35.23 2.75
2393 4059 2.540515 ACGTCTGCAATTCGATTCGAT 58.459 42.857 9.96 0.00 35.23 3.59
2395 4061 3.731216 AGATACGTCTGCAATTCGATTCG 59.269 43.478 10.86 0.00 32.13 3.34
2396 4062 4.999484 CAGATACGTCTGCAATTCGATTC 58.001 43.478 10.86 7.40 44.86 2.52
2490 4170 4.853050 AGCTCCATCGGCAGCAGC 62.853 66.667 0.00 0.00 38.18 5.25
2726 4406 1.481428 CCTCCCGGATGATGTAGGTCT 60.481 57.143 0.73 0.00 0.00 3.85
3237 4917 1.750399 CCCTTGATCCCGCTTGGTG 60.750 63.158 0.00 0.00 34.77 4.17
3352 5034 5.391312 AACTGTCAAAGTCACAAAGCTTT 57.609 34.783 5.69 5.69 38.56 3.51
3358 5040 7.552687 AGAATAGTCAAACTGTCAAAGTCACAA 59.447 33.333 0.00 0.00 38.56 3.33
3389 5071 3.997021 CGAGGAACACTGCTATTTCTTGT 59.003 43.478 0.00 0.00 0.00 3.16
3489 5183 8.799367 ACGTGTGGCACTTATCATATATACTAA 58.201 33.333 19.83 0.00 31.34 2.24
3496 5190 3.871006 CACACGTGTGGCACTTATCATAT 59.129 43.478 35.65 0.00 42.10 1.78
3498 5192 2.076100 CACACGTGTGGCACTTATCAT 58.924 47.619 35.65 0.33 42.10 2.45
3562 5256 8.842358 AACTAAAGTTGTCATTCTCGGATAAA 57.158 30.769 0.00 0.00 36.80 1.40
3593 5287 5.652014 TCTTCCAAACAGAAAGTTGTCATGT 59.348 36.000 0.00 0.00 41.19 3.21
3615 5309 1.671845 GCGGTCTCTTATCGACACTCT 59.328 52.381 0.00 0.00 33.11 3.24
3616 5310 1.268640 GGCGGTCTCTTATCGACACTC 60.269 57.143 0.00 0.00 33.11 3.51
3617 5311 0.739561 GGCGGTCTCTTATCGACACT 59.260 55.000 0.00 0.00 33.11 3.55
3618 5312 0.454600 TGGCGGTCTCTTATCGACAC 59.545 55.000 0.00 0.00 36.97 3.67
3619 5313 0.454600 GTGGCGGTCTCTTATCGACA 59.545 55.000 0.00 0.00 39.82 4.35
3620 5314 0.739561 AGTGGCGGTCTCTTATCGAC 59.260 55.000 0.00 0.00 0.00 4.20
3621 5315 1.471119 AAGTGGCGGTCTCTTATCGA 58.529 50.000 0.00 0.00 0.00 3.59
3622 5316 2.295253 AAAGTGGCGGTCTCTTATCG 57.705 50.000 0.00 0.00 0.00 2.92
3623 5317 2.937149 GGAAAAGTGGCGGTCTCTTATC 59.063 50.000 0.00 0.00 0.00 1.75
3624 5318 2.304761 TGGAAAAGTGGCGGTCTCTTAT 59.695 45.455 0.00 0.00 0.00 1.73
3625 5319 1.695242 TGGAAAAGTGGCGGTCTCTTA 59.305 47.619 0.00 0.00 0.00 2.10
3626 5320 0.472471 TGGAAAAGTGGCGGTCTCTT 59.528 50.000 0.00 0.00 0.00 2.85
3627 5321 0.472471 TTGGAAAAGTGGCGGTCTCT 59.528 50.000 0.00 0.00 0.00 3.10
3628 5322 1.314730 TTTGGAAAAGTGGCGGTCTC 58.685 50.000 0.00 0.00 0.00 3.36
3629 5323 1.995376 ATTTGGAAAAGTGGCGGTCT 58.005 45.000 0.00 0.00 0.00 3.85
3630 5324 2.812358 AATTTGGAAAAGTGGCGGTC 57.188 45.000 0.00 0.00 0.00 4.79
3631 5325 4.674281 TTAAATTTGGAAAAGTGGCGGT 57.326 36.364 0.00 0.00 0.00 5.68
3632 5326 6.369799 CAAATTAAATTTGGAAAAGTGGCGG 58.630 36.000 0.00 0.00 44.44 6.13
3648 5342 9.098355 CCGACACTCTTCTCATATCAAATTAAA 57.902 33.333 0.00 0.00 0.00 1.52
3649 5343 8.258007 ACCGACACTCTTCTCATATCAAATTAA 58.742 33.333 0.00 0.00 0.00 1.40
3650 5344 7.706607 CACCGACACTCTTCTCATATCAAATTA 59.293 37.037 0.00 0.00 0.00 1.40
3651 5345 6.536582 CACCGACACTCTTCTCATATCAAATT 59.463 38.462 0.00 0.00 0.00 1.82
3652 5346 6.045318 CACCGACACTCTTCTCATATCAAAT 58.955 40.000 0.00 0.00 0.00 2.32
3653 5347 5.047306 ACACCGACACTCTTCTCATATCAAA 60.047 40.000 0.00 0.00 0.00 2.69
3654 5348 4.462834 ACACCGACACTCTTCTCATATCAA 59.537 41.667 0.00 0.00 0.00 2.57
3655 5349 4.017126 ACACCGACACTCTTCTCATATCA 58.983 43.478 0.00 0.00 0.00 2.15
3656 5350 4.096532 TGACACCGACACTCTTCTCATATC 59.903 45.833 0.00 0.00 0.00 1.63
3657 5351 4.017126 TGACACCGACACTCTTCTCATAT 58.983 43.478 0.00 0.00 0.00 1.78
3658 5352 3.418047 TGACACCGACACTCTTCTCATA 58.582 45.455 0.00 0.00 0.00 2.15
3659 5353 2.239400 TGACACCGACACTCTTCTCAT 58.761 47.619 0.00 0.00 0.00 2.90
3660 5354 1.687563 TGACACCGACACTCTTCTCA 58.312 50.000 0.00 0.00 0.00 3.27
3661 5355 2.795175 TTGACACCGACACTCTTCTC 57.205 50.000 0.00 0.00 0.00 2.87
3662 5356 3.195661 GTTTTGACACCGACACTCTTCT 58.804 45.455 0.00 0.00 0.00 2.85
3663 5357 2.287103 GGTTTTGACACCGACACTCTTC 59.713 50.000 0.00 0.00 0.00 2.87
3664 5358 2.285977 GGTTTTGACACCGACACTCTT 58.714 47.619 0.00 0.00 0.00 2.85
3665 5359 1.949465 GGTTTTGACACCGACACTCT 58.051 50.000 0.00 0.00 0.00 3.24
3673 5367 1.918868 GATCGGCCGGTTTTGACACC 61.919 60.000 27.83 0.00 0.00 4.16
3674 5368 0.953960 AGATCGGCCGGTTTTGACAC 60.954 55.000 27.83 3.65 0.00 3.67
3675 5369 0.672401 GAGATCGGCCGGTTTTGACA 60.672 55.000 27.83 2.60 0.00 3.58
3676 5370 1.693083 CGAGATCGGCCGGTTTTGAC 61.693 60.000 27.83 5.44 35.37 3.18
3677 5371 1.447140 CGAGATCGGCCGGTTTTGA 60.447 57.895 27.83 4.46 35.37 2.69
3678 5372 1.421410 CTCGAGATCGGCCGGTTTTG 61.421 60.000 27.83 18.48 40.29 2.44
3679 5373 1.153628 CTCGAGATCGGCCGGTTTT 60.154 57.895 27.83 11.20 40.29 2.43
3680 5374 1.033746 TACTCGAGATCGGCCGGTTT 61.034 55.000 27.83 15.09 40.29 3.27
3681 5375 1.445716 CTACTCGAGATCGGCCGGTT 61.446 60.000 27.83 13.92 40.29 4.44
3682 5376 1.892862 CTACTCGAGATCGGCCGGT 60.893 63.158 27.83 21.57 40.29 5.28
3683 5377 2.618219 CCTACTCGAGATCGGCCGG 61.618 68.421 27.83 8.93 40.29 6.13
3684 5378 2.618219 CCCTACTCGAGATCGGCCG 61.618 68.421 22.12 22.12 40.29 6.13
3685 5379 2.269529 CCCCTACTCGAGATCGGCC 61.270 68.421 21.68 0.00 40.29 6.13
3686 5380 2.269529 CCCCCTACTCGAGATCGGC 61.270 68.421 21.68 0.00 40.29 5.54
3687 5381 0.399454 TACCCCCTACTCGAGATCGG 59.601 60.000 21.68 15.05 40.29 4.18
3688 5382 1.072015 AGTACCCCCTACTCGAGATCG 59.928 57.143 21.68 6.42 41.45 3.69
3689 5383 2.106166 TCAGTACCCCCTACTCGAGATC 59.894 54.545 21.68 0.00 32.90 2.75
3690 5384 2.106857 CTCAGTACCCCCTACTCGAGAT 59.893 54.545 21.68 6.08 35.11 2.75
3691 5385 1.489649 CTCAGTACCCCCTACTCGAGA 59.510 57.143 21.68 1.61 35.11 4.04
3692 5386 1.477195 CCTCAGTACCCCCTACTCGAG 60.477 61.905 11.84 11.84 32.90 4.04
3693 5387 0.549950 CCTCAGTACCCCCTACTCGA 59.450 60.000 0.00 0.00 32.90 4.04
3694 5388 0.467659 CCCTCAGTACCCCCTACTCG 60.468 65.000 0.00 0.00 32.90 4.18
3695 5389 0.932211 TCCCTCAGTACCCCCTACTC 59.068 60.000 0.00 0.00 32.90 2.59
3696 5390 0.935194 CTCCCTCAGTACCCCCTACT 59.065 60.000 0.00 0.00 35.94 2.57
3697 5391 0.635555 ACTCCCTCAGTACCCCCTAC 59.364 60.000 0.00 0.00 31.37 3.18
3698 5392 0.932211 GACTCCCTCAGTACCCCCTA 59.068 60.000 0.00 0.00 34.41 3.53
3699 5393 1.704704 GACTCCCTCAGTACCCCCT 59.295 63.158 0.00 0.00 34.41 4.79
3700 5394 1.382833 GGACTCCCTCAGTACCCCC 60.383 68.421 0.00 0.00 34.41 5.40
3701 5395 0.688087 CAGGACTCCCTCAGTACCCC 60.688 65.000 0.00 0.00 42.02 4.95
3702 5396 0.688087 CCAGGACTCCCTCAGTACCC 60.688 65.000 0.00 0.00 42.02 3.69
3703 5397 0.335361 TCCAGGACTCCCTCAGTACC 59.665 60.000 0.00 0.00 42.02 3.34
3704 5398 2.463047 ATCCAGGACTCCCTCAGTAC 57.537 55.000 0.00 0.00 42.02 2.73
3705 5399 4.547671 CTTAATCCAGGACTCCCTCAGTA 58.452 47.826 0.00 0.00 42.02 2.74
3763 5457 0.178767 TCTTCATGGCCCATCAGTCG 59.821 55.000 0.00 0.00 0.00 4.18
3824 5519 1.243342 CCTTGCCATCCACGCAAAGA 61.243 55.000 0.00 0.00 45.11 2.52
3843 5538 2.546778 TCTTCATATCCGAACGCCAAC 58.453 47.619 0.00 0.00 0.00 3.77
3900 5595 6.008960 CGGTTTATATAGACACTAGAGGGGT 58.991 44.000 0.00 0.00 0.00 4.95
3948 5644 4.406648 TGTCTAGCCTGTATGATTGTGG 57.593 45.455 0.00 0.00 0.00 4.17
4017 5713 9.000486 GCTTGATTGATCTTGATGAATATGAGA 58.000 33.333 0.00 0.00 0.00 3.27
4098 5794 0.546747 TGGTAACAGGAGACAGGGGG 60.547 60.000 0.00 0.00 46.17 5.40
4191 5887 2.551887 CGACACATCGGATCTCTCTCAT 59.448 50.000 0.00 0.00 44.99 2.90
4205 5901 1.174783 ACCTTCTAGCGACGACACAT 58.825 50.000 0.00 0.00 0.00 3.21
4232 5928 3.929955 TGTTGTAGATGATGGATGGCA 57.070 42.857 0.00 0.00 0.00 4.92
4233 5929 6.000219 AGTATTGTTGTAGATGATGGATGGC 59.000 40.000 0.00 0.00 0.00 4.40
4260 5956 2.239681 GGAGAAAGACCTCCCTCAGA 57.760 55.000 0.00 0.00 45.44 3.27
4305 6001 2.000447 GAGTTGGTCCGCAGTATGAAC 59.000 52.381 0.00 0.00 39.69 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.