Multiple sequence alignment - TraesCS5A01G372400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G372400 chr5A 100.000 3452 0 0 1 3452 570777187 570780638 0.000000e+00 6375.0
1 TraesCS5A01G372400 chr5A 82.301 113 12 3 2287 2393 8961866 8961976 1.320000e-14 91.6
2 TraesCS5A01G372400 chr5A 100.000 33 0 0 2158 2190 570779239 570779271 1.030000e-05 62.1
3 TraesCS5A01G372400 chr5A 100.000 33 0 0 2053 2085 570779344 570779376 1.030000e-05 62.1
4 TraesCS5A01G372400 chr5A 100.000 29 0 0 2084 2112 570779210 570779238 2.000000e-03 54.7
5 TraesCS5A01G372400 chr5A 100.000 29 0 0 2024 2052 570779270 570779298 2.000000e-03 54.7
6 TraesCS5A01G372400 chr5B 90.483 1492 79 25 803 2289 551678968 551680401 0.000000e+00 1910.0
7 TraesCS5A01G372400 chr5B 88.687 937 69 8 2404 3304 599509562 599510497 0.000000e+00 1109.0
8 TraesCS5A01G372400 chr5B 85.147 882 97 19 2402 3268 8526749 8525887 0.000000e+00 872.0
9 TraesCS5A01G372400 chr5B 84.113 919 91 20 2402 3291 687027029 687027921 0.000000e+00 837.0
10 TraesCS5A01G372400 chr5B 86.829 410 37 9 277 670 551678343 551678751 3.160000e-120 442.0
11 TraesCS5A01G372400 chr5B 85.714 378 33 10 2402 2759 314289136 314288760 2.510000e-101 379.0
12 TraesCS5A01G372400 chr5B 93.878 49 3 0 690 738 551678789 551678837 1.330000e-09 75.0
13 TraesCS5A01G372400 chr5B 97.436 39 1 0 125 163 551678291 551678329 2.220000e-07 67.6
14 TraesCS5A01G372400 chr5D 91.705 1085 48 12 803 1875 451909007 451910061 0.000000e+00 1467.0
15 TraesCS5A01G372400 chr5D 83.114 912 86 40 2404 3304 25466358 25467212 0.000000e+00 769.0
16 TraesCS5A01G372400 chr5D 83.774 530 48 19 10 523 451908203 451908710 5.220000e-128 468.0
17 TraesCS5A01G372400 chr5D 83.478 115 11 3 2287 2395 140430748 140430636 2.190000e-17 100.0
18 TraesCS5A01G372400 chr2B 88.614 931 68 12 2401 3304 723355231 723356150 0.000000e+00 1098.0
19 TraesCS5A01G372400 chr2B 81.818 110 8 7 2295 2397 512484680 512484784 7.940000e-12 82.4
20 TraesCS5A01G372400 chr1A 88.449 935 70 13 2404 3302 486413189 486412257 0.000000e+00 1094.0
21 TraesCS5A01G372400 chr1A 82.353 918 121 22 2395 3291 39823983 39823086 0.000000e+00 760.0
22 TraesCS5A01G372400 chr6A 88.310 941 70 13 2404 3304 613978515 613977575 0.000000e+00 1092.0
23 TraesCS5A01G372400 chr6A 88.470 928 68 9 2402 3300 217772930 217773847 0.000000e+00 1085.0
24 TraesCS5A01G372400 chr6A 90.738 745 51 7 2578 3304 3629316 3630060 0.000000e+00 977.0
25 TraesCS5A01G372400 chr6A 98.675 151 1 1 3302 3452 410575760 410575611 2.040000e-67 267.0
26 TraesCS5A01G372400 chr6A 97.419 155 4 0 3298 3452 19523258 19523412 7.350000e-67 265.0
27 TraesCS5A01G372400 chr6A 97.436 156 2 2 3297 3452 383945587 383945434 7.350000e-67 265.0
28 TraesCS5A01G372400 chr1B 88.310 941 70 12 2402 3304 516964953 516964015 0.000000e+00 1092.0
29 TraesCS5A01G372400 chr1B 83.913 920 104 25 2404 3291 259489619 259488712 0.000000e+00 839.0
30 TraesCS5A01G372400 chr1B 82.477 331 30 7 2397 2701 667886667 667886995 7.350000e-67 265.0
31 TraesCS5A01G372400 chr1B 80.524 267 36 11 2404 2661 654647624 654647365 1.260000e-44 191.0
32 TraesCS5A01G372400 chr7B 87.863 931 73 13 2404 3304 693314813 693313893 0.000000e+00 1057.0
33 TraesCS5A01G372400 chr7B 87.687 934 66 21 2406 3304 605768711 605769630 0.000000e+00 1042.0
34 TraesCS5A01G372400 chr7B 83.088 544 64 13 1241 1783 324390717 324391233 1.450000e-128 470.0
35 TraesCS5A01G372400 chr7B 83.571 140 15 3 968 1106 324390440 324390572 1.300000e-24 124.0
36 TraesCS5A01G372400 chr7B 81.301 123 17 4 2280 2397 631719520 631719399 1.020000e-15 95.3
37 TraesCS5A01G372400 chr6B 88.726 887 71 8 2404 3268 116128517 116127638 0.000000e+00 1057.0
38 TraesCS5A01G372400 chr6B 86.695 947 85 16 2392 3304 116744309 116745248 0.000000e+00 1013.0
39 TraesCS5A01G372400 chr6B 82.930 908 109 20 2404 3291 252100343 252101224 0.000000e+00 776.0
40 TraesCS5A01G372400 chr4B 87.353 933 78 17 2404 3304 544035744 544034820 0.000000e+00 1033.0
41 TraesCS5A01G372400 chr3B 83.860 917 74 23 2404 3291 26436497 26435626 0.000000e+00 806.0
42 TraesCS5A01G372400 chr2D 85.604 778 76 21 2404 3166 593521537 593522293 0.000000e+00 784.0
43 TraesCS5A01G372400 chr2D 86.765 68 7 2 2404 2470 36379329 36379395 1.330000e-09 75.0
44 TraesCS5A01G372400 chr6D 85.476 778 73 21 2404 3166 87369597 87370349 0.000000e+00 774.0
45 TraesCS5A01G372400 chr6D 83.245 752 76 27 2404 3143 441653529 441654242 0.000000e+00 645.0
46 TraesCS5A01G372400 chr6D 90.761 184 11 3 2404 2585 462801402 462801223 1.240000e-59 241.0
47 TraesCS5A01G372400 chr7D 86.231 719 64 19 2461 3164 634236119 634235421 0.000000e+00 747.0
48 TraesCS5A01G372400 chr7D 89.600 125 10 2 401 525 362375835 362375714 4.610000e-34 156.0
49 TraesCS5A01G372400 chr3A 82.648 438 53 18 2402 2834 710279296 710279715 1.960000e-97 366.0
50 TraesCS5A01G372400 chr4A 86.420 324 24 3 2402 2707 503239068 503238747 1.530000e-88 337.0
51 TraesCS5A01G372400 chr7A 98.675 151 2 0 3302 3452 50166859 50167009 5.680000e-68 268.0
52 TraesCS5A01G372400 chr7A 98.675 151 1 1 3302 3452 29536110 29535961 2.040000e-67 267.0
53 TraesCS5A01G372400 chr7A 98.667 150 1 1 3303 3452 133934337 133934189 7.350000e-67 265.0
54 TraesCS5A01G372400 chr7A 96.835 158 3 2 3295 3452 549715208 549715363 2.640000e-66 263.0
55 TraesCS5A01G372400 chr7A 89.431 123 10 2 403 525 380516167 380516048 5.970000e-33 152.0
56 TraesCS5A01G372400 chr2A 97.419 155 4 0 3298 3452 23473009 23473163 7.350000e-67 265.0
57 TraesCS5A01G372400 chr1D 97.436 156 3 1 3298 3452 452597475 452597320 7.350000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G372400 chr5A 570777187 570780638 3451 False 1321.72 6375 100.0000 1 3452 5 chr5A.!!$F2 3451
1 TraesCS5A01G372400 chr5B 599509562 599510497 935 False 1109.00 1109 88.6870 2404 3304 1 chr5B.!!$F1 900
2 TraesCS5A01G372400 chr5B 8525887 8526749 862 True 872.00 872 85.1470 2402 3268 1 chr5B.!!$R1 866
3 TraesCS5A01G372400 chr5B 687027029 687027921 892 False 837.00 837 84.1130 2402 3291 1 chr5B.!!$F2 889
4 TraesCS5A01G372400 chr5B 551678291 551680401 2110 False 623.65 1910 92.1565 125 2289 4 chr5B.!!$F3 2164
5 TraesCS5A01G372400 chr5D 451908203 451910061 1858 False 967.50 1467 87.7395 10 1875 2 chr5D.!!$F2 1865
6 TraesCS5A01G372400 chr5D 25466358 25467212 854 False 769.00 769 83.1140 2404 3304 1 chr5D.!!$F1 900
7 TraesCS5A01G372400 chr2B 723355231 723356150 919 False 1098.00 1098 88.6140 2401 3304 1 chr2B.!!$F2 903
8 TraesCS5A01G372400 chr1A 486412257 486413189 932 True 1094.00 1094 88.4490 2404 3302 1 chr1A.!!$R2 898
9 TraesCS5A01G372400 chr1A 39823086 39823983 897 True 760.00 760 82.3530 2395 3291 1 chr1A.!!$R1 896
10 TraesCS5A01G372400 chr6A 613977575 613978515 940 True 1092.00 1092 88.3100 2404 3304 1 chr6A.!!$R3 900
11 TraesCS5A01G372400 chr6A 217772930 217773847 917 False 1085.00 1085 88.4700 2402 3300 1 chr6A.!!$F3 898
12 TraesCS5A01G372400 chr6A 3629316 3630060 744 False 977.00 977 90.7380 2578 3304 1 chr6A.!!$F1 726
13 TraesCS5A01G372400 chr1B 516964015 516964953 938 True 1092.00 1092 88.3100 2402 3304 1 chr1B.!!$R2 902
14 TraesCS5A01G372400 chr1B 259488712 259489619 907 True 839.00 839 83.9130 2404 3291 1 chr1B.!!$R1 887
15 TraesCS5A01G372400 chr7B 693313893 693314813 920 True 1057.00 1057 87.8630 2404 3304 1 chr7B.!!$R2 900
16 TraesCS5A01G372400 chr7B 605768711 605769630 919 False 1042.00 1042 87.6870 2406 3304 1 chr7B.!!$F1 898
17 TraesCS5A01G372400 chr7B 324390440 324391233 793 False 297.00 470 83.3295 968 1783 2 chr7B.!!$F2 815
18 TraesCS5A01G372400 chr6B 116127638 116128517 879 True 1057.00 1057 88.7260 2404 3268 1 chr6B.!!$R1 864
19 TraesCS5A01G372400 chr6B 116744309 116745248 939 False 1013.00 1013 86.6950 2392 3304 1 chr6B.!!$F1 912
20 TraesCS5A01G372400 chr6B 252100343 252101224 881 False 776.00 776 82.9300 2404 3291 1 chr6B.!!$F2 887
21 TraesCS5A01G372400 chr4B 544034820 544035744 924 True 1033.00 1033 87.3530 2404 3304 1 chr4B.!!$R1 900
22 TraesCS5A01G372400 chr3B 26435626 26436497 871 True 806.00 806 83.8600 2404 3291 1 chr3B.!!$R1 887
23 TraesCS5A01G372400 chr2D 593521537 593522293 756 False 784.00 784 85.6040 2404 3166 1 chr2D.!!$F2 762
24 TraesCS5A01G372400 chr6D 87369597 87370349 752 False 774.00 774 85.4760 2404 3166 1 chr6D.!!$F1 762
25 TraesCS5A01G372400 chr6D 441653529 441654242 713 False 645.00 645 83.2450 2404 3143 1 chr6D.!!$F2 739
26 TraesCS5A01G372400 chr7D 634235421 634236119 698 True 747.00 747 86.2310 2461 3164 1 chr7D.!!$R2 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 791 0.033601 GGTGGTGGTGATATTGGCCA 60.034 55.0 0.00 0.0 0.00 5.36 F
1957 2201 0.172803 GCTCTGCTGCAAGGATTTGG 59.827 55.0 3.02 0.0 29.63 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2261 0.387202 ATCATCTGAAGCTCGACCCG 59.613 55.000 0.0 0.0 0.00 5.28 R
3127 3560 1.675310 CCAATGCCTTCTGCCGACA 60.675 57.895 0.0 0.0 40.16 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.990541 TGAACACATTTTGATTCTGAAGTTG 57.009 32.000 0.00 0.00 0.00 3.16
68 69 8.681486 TTTGATTCTGAAGTTGAAATCTCAGA 57.319 30.769 0.00 0.00 31.69 3.27
79 80 1.366319 AATCTCAGAGGGGTTGCTGT 58.634 50.000 0.00 0.00 33.90 4.40
98 100 2.224185 TGTAACACCCATAGCATAGCCG 60.224 50.000 0.00 0.00 0.00 5.52
113 115 4.034163 GCATAGCCGTTTTACCTCTTCTTC 59.966 45.833 0.00 0.00 0.00 2.87
114 116 5.420409 CATAGCCGTTTTACCTCTTCTTCT 58.580 41.667 0.00 0.00 0.00 2.85
115 117 4.353383 AGCCGTTTTACCTCTTCTTCTT 57.647 40.909 0.00 0.00 0.00 2.52
116 118 4.316645 AGCCGTTTTACCTCTTCTTCTTC 58.683 43.478 0.00 0.00 0.00 2.87
117 119 4.040584 AGCCGTTTTACCTCTTCTTCTTCT 59.959 41.667 0.00 0.00 0.00 2.85
118 120 4.755629 GCCGTTTTACCTCTTCTTCTTCTT 59.244 41.667 0.00 0.00 0.00 2.52
119 121 5.107026 GCCGTTTTACCTCTTCTTCTTCTTC 60.107 44.000 0.00 0.00 0.00 2.87
120 122 6.224584 CCGTTTTACCTCTTCTTCTTCTTCT 58.775 40.000 0.00 0.00 0.00 2.85
121 123 6.706716 CCGTTTTACCTCTTCTTCTTCTTCTT 59.293 38.462 0.00 0.00 0.00 2.52
122 124 7.095565 CCGTTTTACCTCTTCTTCTTCTTCTTC 60.096 40.741 0.00 0.00 0.00 2.87
123 125 7.438459 CGTTTTACCTCTTCTTCTTCTTCTTCA 59.562 37.037 0.00 0.00 0.00 3.02
182 190 3.888930 CCAGTTGTTGCCTCCTTTTCTTA 59.111 43.478 0.00 0.00 0.00 2.10
184 192 4.022849 CAGTTGTTGCCTCCTTTTCTTAGG 60.023 45.833 0.00 0.00 36.59 2.69
209 217 7.709613 GGGAAAAATTTCTGATCTGAATCATGG 59.290 37.037 14.89 0.00 41.05 3.66
221 229 5.065914 TCTGAATCATGGCATAGGTTTAGC 58.934 41.667 0.00 0.00 0.00 3.09
226 234 2.332063 TGGCATAGGTTTAGCTGCTC 57.668 50.000 4.91 0.00 35.03 4.26
232 242 4.262635 GCATAGGTTTAGCTGCTCCTGATA 60.263 45.833 16.30 3.13 0.00 2.15
234 244 4.348863 AGGTTTAGCTGCTCCTGATATG 57.651 45.455 4.91 0.00 0.00 1.78
242 252 3.675775 GCTGCTCCTGATATGCTACTAGC 60.676 52.174 0.61 0.61 42.82 3.42
277 287 2.789409 ACATACAAGGAACAGCTCCC 57.211 50.000 0.00 0.00 46.81 4.30
281 291 1.122019 ACAAGGAACAGCTCCCTCGT 61.122 55.000 0.00 0.00 46.81 4.18
325 335 3.753272 TGAACTTACAGAAGGATTGCAGC 59.247 43.478 0.00 0.00 36.95 5.25
329 339 2.706339 ACAGAAGGATTGCAGCTAGG 57.294 50.000 0.00 0.00 0.00 3.02
330 340 1.211457 ACAGAAGGATTGCAGCTAGGG 59.789 52.381 0.00 0.00 0.00 3.53
359 370 6.374053 GGATTAAAATTGGTTGGTTTGGGATG 59.626 38.462 0.00 0.00 0.00 3.51
385 396 1.841556 GGTGGGGTGTGGAGTCTGA 60.842 63.158 0.00 0.00 0.00 3.27
439 456 3.079578 CAAGCAGCTTCTTTGGAGATGA 58.920 45.455 4.07 0.00 30.64 2.92
446 463 5.002516 AGCTTCTTTGGAGATGAAACTCTG 58.997 41.667 0.00 0.00 37.13 3.35
478 495 0.467290 GCTGGGGTTCACCAAGACAA 60.467 55.000 0.00 0.00 43.78 3.18
492 509 2.564062 CAAGACAACCATCCAGGCAAAT 59.436 45.455 0.00 0.00 43.14 2.32
509 526 4.762251 GGCAAATCCAGACTCTGTTTACTT 59.238 41.667 5.32 0.00 34.01 2.24
512 529 6.238759 GCAAATCCAGACTCTGTTTACTTTGT 60.239 38.462 5.32 0.00 0.00 2.83
514 531 9.003658 CAAATCCAGACTCTGTTTACTTTGTAT 57.996 33.333 5.32 0.00 0.00 2.29
517 573 8.418597 TCCAGACTCTGTTTACTTTGTATAGT 57.581 34.615 5.32 0.00 0.00 2.12
623 679 1.357761 CCTGTAAGATGGGGTGGGTTT 59.642 52.381 0.00 0.00 34.07 3.27
635 691 2.102578 GGTGGGTTTCCATTGATCCTG 58.897 52.381 0.00 0.00 46.09 3.86
645 701 3.588842 TCCATTGATCCTGAGGTCTTTGT 59.411 43.478 0.00 0.00 0.00 2.83
646 702 3.693085 CCATTGATCCTGAGGTCTTTGTG 59.307 47.826 0.00 0.00 0.00 3.33
684 740 1.005924 GATGAAATCAGGGGTGGTGGT 59.994 52.381 0.00 0.00 44.70 4.16
685 741 0.112218 TGAAATCAGGGGTGGTGGTG 59.888 55.000 0.00 0.00 0.00 4.17
688 744 1.979809 AATCAGGGGTGGTGGTGATA 58.020 50.000 0.00 0.00 0.00 2.15
695 791 0.033601 GGTGGTGGTGATATTGGCCA 60.034 55.000 0.00 0.00 0.00 5.36
707 803 4.220382 TGATATTGGCCAAAAGTTGACTGG 59.780 41.667 24.71 0.00 0.00 4.00
754 858 7.885922 TCAAGATAGTCTACTGAGTTCTCTTGT 59.114 37.037 12.19 3.60 40.46 3.16
757 861 4.730966 AGTCTACTGAGTTCTCTTGTGGA 58.269 43.478 0.00 5.34 0.00 4.02
777 910 2.103941 GACCTCAATCTTCCAGGCTAGG 59.896 54.545 0.00 0.00 0.00 3.02
815 977 6.441274 CATGTACTTGCTGAGACATGTTTTT 58.559 36.000 0.00 0.00 42.66 1.94
825 987 7.014134 TGCTGAGACATGTTTTTCCTTAATTCA 59.986 33.333 0.00 0.00 0.00 2.57
863 1025 4.298332 CTTTTCCACATGTGTAGTTTGCC 58.702 43.478 23.79 0.00 0.00 4.52
902 1072 6.261826 CCGATTTTCTCATTCTTAGCCTGATT 59.738 38.462 0.00 0.00 0.00 2.57
915 1085 7.118723 TCTTAGCCTGATTATTGAATGGTGTT 58.881 34.615 0.00 0.00 0.00 3.32
929 1099 6.699366 TGAATGGTGTTGTAAATGCATGAAT 58.301 32.000 0.00 0.00 0.00 2.57
1006 1176 7.125811 TGTTCATCTACCAGATTAAAGTAGGCT 59.874 37.037 0.00 0.00 31.32 4.58
1107 1280 5.198965 AGAAGCTGATGAAACCTGCATTAT 58.801 37.500 0.00 0.00 0.00 1.28
1178 1354 2.799412 GCAAGATCAGAAGCGACATAGG 59.201 50.000 0.00 0.00 0.00 2.57
1218 1444 2.203266 GCCATGAGCTACTGGGGC 60.203 66.667 14.26 7.26 38.99 5.80
1320 1555 1.629043 TCTACAACGAGACCCTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
1477 1712 1.748122 CTGGTGCTGGTCATGCTCC 60.748 63.158 0.00 0.00 42.44 4.70
1495 1730 3.452474 CTCCTGATCCAGAACATCGTTC 58.548 50.000 0.00 0.00 32.44 3.95
1533 1768 3.706373 CTGGCGGTGTACCTGGCT 61.706 66.667 14.72 0.00 36.57 4.75
1779 2023 2.260844 TCTCAGGTGGCAAAGTCTTG 57.739 50.000 0.00 0.00 35.49 3.02
1898 2142 4.406003 TCCCTCCTTAGATTTGTCTGCTAC 59.594 45.833 0.00 0.00 0.00 3.58
1957 2201 0.172803 GCTCTGCTGCAAGGATTTGG 59.827 55.000 3.02 0.00 29.63 3.28
1960 2204 2.559668 CTCTGCTGCAAGGATTTGGAAA 59.440 45.455 3.02 0.00 34.03 3.13
2002 2246 0.339162 TCCCATGCATCCCATTTGGT 59.661 50.000 0.00 0.00 34.77 3.67
2033 2277 3.082579 GCCGGGTCGAGCTTCAGAT 62.083 63.158 15.18 0.00 0.00 2.90
2044 2288 6.128282 GGTCGAGCTTCAGATGATTAAAACAA 60.128 38.462 7.51 0.00 0.00 2.83
2045 2289 6.738649 GTCGAGCTTCAGATGATTAAAACAAC 59.261 38.462 0.00 0.00 0.00 3.32
2048 2292 5.095490 GCTTCAGATGATTAAAACAACGGG 58.905 41.667 0.00 0.00 0.00 5.28
2051 2295 6.885952 TCAGATGATTAAAACAACGGGAAA 57.114 33.333 0.00 0.00 0.00 3.13
2052 2296 7.278461 TCAGATGATTAAAACAACGGGAAAA 57.722 32.000 0.00 0.00 0.00 2.29
2054 2298 6.586082 CAGATGATTAAAACAACGGGAAAAGG 59.414 38.462 0.00 0.00 0.00 3.11
2055 2299 4.623002 TGATTAAAACAACGGGAAAAGGC 58.377 39.130 0.00 0.00 0.00 4.35
2056 2300 4.099573 TGATTAAAACAACGGGAAAAGGCA 59.900 37.500 0.00 0.00 0.00 4.75
2057 2301 4.674281 TTAAAACAACGGGAAAAGGCAT 57.326 36.364 0.00 0.00 0.00 4.40
2058 2302 5.786264 TTAAAACAACGGGAAAAGGCATA 57.214 34.783 0.00 0.00 0.00 3.14
2059 2303 3.653539 AAACAACGGGAAAAGGCATAC 57.346 42.857 0.00 0.00 0.00 2.39
2060 2304 2.279935 ACAACGGGAAAAGGCATACA 57.720 45.000 0.00 0.00 0.00 2.29
2061 2305 2.588620 ACAACGGGAAAAGGCATACAA 58.411 42.857 0.00 0.00 0.00 2.41
2062 2306 2.295070 ACAACGGGAAAAGGCATACAAC 59.705 45.455 0.00 0.00 0.00 3.32
2063 2307 2.556622 CAACGGGAAAAGGCATACAACT 59.443 45.455 0.00 0.00 0.00 3.16
2064 2308 2.159382 ACGGGAAAAGGCATACAACTG 58.841 47.619 0.00 0.00 0.00 3.16
2065 2309 2.224670 ACGGGAAAAGGCATACAACTGA 60.225 45.455 0.00 0.00 0.00 3.41
2066 2310 2.817258 CGGGAAAAGGCATACAACTGAA 59.183 45.455 0.00 0.00 0.00 3.02
2067 2311 3.365969 CGGGAAAAGGCATACAACTGAAC 60.366 47.826 0.00 0.00 0.00 3.18
2068 2312 3.826729 GGGAAAAGGCATACAACTGAACT 59.173 43.478 0.00 0.00 0.00 3.01
2069 2313 5.007682 GGGAAAAGGCATACAACTGAACTA 58.992 41.667 0.00 0.00 0.00 2.24
2070 2314 5.123979 GGGAAAAGGCATACAACTGAACTAG 59.876 44.000 0.00 0.00 0.00 2.57
2071 2315 5.392057 GGAAAAGGCATACAACTGAACTAGC 60.392 44.000 0.00 0.00 0.00 3.42
2072 2316 3.981071 AGGCATACAACTGAACTAGCA 57.019 42.857 0.00 0.00 0.00 3.49
2073 2317 3.600388 AGGCATACAACTGAACTAGCAC 58.400 45.455 0.00 0.00 0.00 4.40
2074 2318 3.261897 AGGCATACAACTGAACTAGCACT 59.738 43.478 0.00 0.00 0.00 4.40
2075 2319 3.619038 GGCATACAACTGAACTAGCACTC 59.381 47.826 0.00 0.00 0.00 3.51
2076 2320 4.499183 GCATACAACTGAACTAGCACTCT 58.501 43.478 0.00 0.00 0.00 3.24
2079 2323 4.672587 ACAACTGAACTAGCACTCTCAA 57.327 40.909 0.00 0.00 0.00 3.02
2083 2327 4.564041 ACTGAACTAGCACTCTCAACATG 58.436 43.478 0.00 0.00 0.00 3.21
2085 2329 4.814147 TGAACTAGCACTCTCAACATGAG 58.186 43.478 0.00 0.88 45.59 2.90
2087 2331 2.830923 ACTAGCACTCTCAACATGAGCT 59.169 45.455 0.00 0.00 43.95 4.09
2088 2332 2.855209 AGCACTCTCAACATGAGCTT 57.145 45.000 0.00 0.00 43.95 3.74
2089 2333 2.697654 AGCACTCTCAACATGAGCTTC 58.302 47.619 0.00 0.00 43.95 3.86
2091 2335 2.415857 GCACTCTCAACATGAGCTTCAG 59.584 50.000 0.00 0.00 43.95 3.02
2093 2337 4.505808 CACTCTCAACATGAGCTTCAGAT 58.494 43.478 0.00 0.00 43.95 2.90
2094 2338 4.330347 CACTCTCAACATGAGCTTCAGATG 59.670 45.833 0.00 0.00 43.95 2.90
2095 2339 4.222366 ACTCTCAACATGAGCTTCAGATGA 59.778 41.667 0.00 0.00 43.95 2.92
2096 2340 5.104859 ACTCTCAACATGAGCTTCAGATGAT 60.105 40.000 0.00 0.00 43.95 2.45
2099 2343 7.333323 TCTCAACATGAGCTTCAGATGATTAA 58.667 34.615 0.00 0.00 43.95 1.40
2101 2345 8.339344 TCAACATGAGCTTCAGATGATTAAAA 57.661 30.769 0.00 0.00 0.00 1.52
2105 2349 8.025445 ACATGAGCTTCAGATGATTAAAACAAC 58.975 33.333 0.00 0.00 0.00 3.32
2107 2351 5.942872 AGCTTCAGATGATTAAAACAACGG 58.057 37.500 0.00 0.00 0.00 4.44
2114 2358 7.040062 TCAGATGATTAAAACAACGGGAAATGT 60.040 33.333 0.00 0.00 0.00 2.71
2115 2359 7.598493 CAGATGATTAAAACAACGGGAAATGTT 59.402 33.333 0.00 0.00 41.31 2.71
2124 2368 4.732784 CAACGGGAAATGTTGTAAGATGG 58.267 43.478 0.00 0.00 41.32 3.51
2129 2373 3.119137 GGAAATGTTGTAAGATGGGCCAC 60.119 47.826 9.28 2.67 0.00 5.01
2139 2383 1.421646 AGATGGGCCACTAATAGCACC 59.578 52.381 9.28 0.00 0.00 5.01
2143 2387 1.211949 GGGCCACTAATAGCACCTTCA 59.788 52.381 4.39 0.00 0.00 3.02
2159 2403 4.637534 CACCTTCATATGTGGAGTTTCAGG 59.362 45.833 19.19 8.10 0.00 3.86
2185 2432 4.372656 ACAACTGAACTAGCACTCTCAAC 58.627 43.478 0.00 0.00 0.00 3.18
2219 2466 4.573900 AGTCTATCTGCAGGTGAAGTTTG 58.426 43.478 15.13 0.00 0.00 2.93
2223 2470 0.236711 CTGCAGGTGAAGTTTGCTCG 59.763 55.000 5.57 0.00 38.60 5.03
2247 2494 3.290948 CCAAGGGTAATCGATTTGGGA 57.709 47.619 17.19 0.00 35.71 4.37
2248 2495 3.832527 CCAAGGGTAATCGATTTGGGAT 58.167 45.455 17.19 0.00 35.71 3.85
2252 2499 2.806244 GGGTAATCGATTTGGGATGTCG 59.194 50.000 17.19 0.00 36.75 4.35
2261 2508 1.234821 TTGGGATGTCGTTGCACTTC 58.765 50.000 0.00 0.00 0.00 3.01
2265 2514 2.063266 GGATGTCGTTGCACTTCGTAA 58.937 47.619 0.00 0.00 0.00 3.18
2279 2528 7.156673 TGCACTTCGTAAGGTAAATAACTCTT 58.843 34.615 0.00 0.00 38.47 2.85
2280 2529 8.306038 TGCACTTCGTAAGGTAAATAACTCTTA 58.694 33.333 0.00 0.00 38.47 2.10
2281 2530 9.310716 GCACTTCGTAAGGTAAATAACTCTTAT 57.689 33.333 0.00 0.00 38.47 1.73
2295 2544 9.890629 AAATAACTCTTATCAAGTACATGCAGA 57.109 29.630 0.00 0.00 0.00 4.26
2296 2545 8.879342 ATAACTCTTATCAAGTACATGCAGAC 57.121 34.615 0.00 0.00 0.00 3.51
2297 2546 6.537453 ACTCTTATCAAGTACATGCAGACT 57.463 37.500 0.00 0.00 0.00 3.24
2298 2547 7.646548 ACTCTTATCAAGTACATGCAGACTA 57.353 36.000 0.00 0.00 0.00 2.59
2299 2548 8.067751 ACTCTTATCAAGTACATGCAGACTAA 57.932 34.615 0.00 0.00 0.00 2.24
2300 2549 8.194104 ACTCTTATCAAGTACATGCAGACTAAG 58.806 37.037 0.00 0.00 0.00 2.18
2301 2550 7.492524 TCTTATCAAGTACATGCAGACTAAGG 58.507 38.462 0.00 0.00 0.00 2.69
2302 2551 3.861840 TCAAGTACATGCAGACTAAGGC 58.138 45.455 0.00 0.00 0.00 4.35
2303 2552 3.260632 TCAAGTACATGCAGACTAAGGCA 59.739 43.478 0.00 0.00 45.23 4.75
2322 2571 4.381411 GGCATAGCCTAGTGTTAGAAAGG 58.619 47.826 0.00 0.00 46.69 3.11
2323 2572 4.381411 GCATAGCCTAGTGTTAGAAAGGG 58.619 47.826 0.00 0.00 0.00 3.95
2324 2573 4.743955 GCATAGCCTAGTGTTAGAAAGGGG 60.744 50.000 0.00 0.00 0.00 4.79
2325 2574 1.560146 AGCCTAGTGTTAGAAAGGGGC 59.440 52.381 0.00 0.00 38.71 5.80
2326 2575 1.560146 GCCTAGTGTTAGAAAGGGGCT 59.440 52.381 0.00 0.00 35.92 5.19
2327 2576 2.420269 GCCTAGTGTTAGAAAGGGGCTC 60.420 54.545 0.00 0.00 35.92 4.70
2328 2577 2.838202 CCTAGTGTTAGAAAGGGGCTCA 59.162 50.000 0.00 0.00 0.00 4.26
2329 2578 3.456277 CCTAGTGTTAGAAAGGGGCTCAT 59.544 47.826 0.00 0.00 0.00 2.90
2330 2579 3.356529 AGTGTTAGAAAGGGGCTCATG 57.643 47.619 0.00 0.00 0.00 3.07
2331 2580 1.745653 GTGTTAGAAAGGGGCTCATGC 59.254 52.381 0.00 0.00 38.76 4.06
2341 2590 2.440980 GCTCATGCCTTCCCACCC 60.441 66.667 0.00 0.00 0.00 4.61
2342 2591 3.089838 CTCATGCCTTCCCACCCA 58.910 61.111 0.00 0.00 0.00 4.51
2343 2592 1.379044 CTCATGCCTTCCCACCCAC 60.379 63.158 0.00 0.00 0.00 4.61
2344 2593 2.362889 CATGCCTTCCCACCCACC 60.363 66.667 0.00 0.00 0.00 4.61
2345 2594 3.672503 ATGCCTTCCCACCCACCC 61.673 66.667 0.00 0.00 0.00 4.61
2346 2595 4.938756 TGCCTTCCCACCCACCCT 62.939 66.667 0.00 0.00 0.00 4.34
2347 2596 4.048470 GCCTTCCCACCCACCCTC 62.048 72.222 0.00 0.00 0.00 4.30
2348 2597 2.531685 CCTTCCCACCCACCCTCA 60.532 66.667 0.00 0.00 0.00 3.86
2349 2598 1.930656 CCTTCCCACCCACCCTCAT 60.931 63.158 0.00 0.00 0.00 2.90
2350 2599 1.304282 CTTCCCACCCACCCTCATG 59.696 63.158 0.00 0.00 0.00 3.07
2351 2600 1.465188 TTCCCACCCACCCTCATGT 60.465 57.895 0.00 0.00 0.00 3.21
2352 2601 1.071314 TTCCCACCCACCCTCATGTT 61.071 55.000 0.00 0.00 0.00 2.71
2353 2602 1.000896 CCCACCCACCCTCATGTTC 60.001 63.158 0.00 0.00 0.00 3.18
2354 2603 1.500783 CCCACCCACCCTCATGTTCT 61.501 60.000 0.00 0.00 0.00 3.01
2355 2604 1.285280 CCACCCACCCTCATGTTCTA 58.715 55.000 0.00 0.00 0.00 2.10
2356 2605 1.846439 CCACCCACCCTCATGTTCTAT 59.154 52.381 0.00 0.00 0.00 1.98
2357 2606 2.242196 CCACCCACCCTCATGTTCTATT 59.758 50.000 0.00 0.00 0.00 1.73
2358 2607 3.458118 CCACCCACCCTCATGTTCTATTA 59.542 47.826 0.00 0.00 0.00 0.98
2359 2608 4.451900 CACCCACCCTCATGTTCTATTAC 58.548 47.826 0.00 0.00 0.00 1.89
2360 2609 4.164221 CACCCACCCTCATGTTCTATTACT 59.836 45.833 0.00 0.00 0.00 2.24
2361 2610 4.788617 ACCCACCCTCATGTTCTATTACTT 59.211 41.667 0.00 0.00 0.00 2.24
2362 2611 5.968167 ACCCACCCTCATGTTCTATTACTTA 59.032 40.000 0.00 0.00 0.00 2.24
2363 2612 6.126854 ACCCACCCTCATGTTCTATTACTTAC 60.127 42.308 0.00 0.00 0.00 2.34
2364 2613 6.126883 CCCACCCTCATGTTCTATTACTTACA 60.127 42.308 0.00 0.00 0.00 2.41
2365 2614 7.335627 CCACCCTCATGTTCTATTACTTACAA 58.664 38.462 0.00 0.00 0.00 2.41
2366 2615 7.993183 CCACCCTCATGTTCTATTACTTACAAT 59.007 37.037 0.00 0.00 0.00 2.71
2367 2616 9.396022 CACCCTCATGTTCTATTACTTACAATT 57.604 33.333 0.00 0.00 0.00 2.32
2368 2617 9.975218 ACCCTCATGTTCTATTACTTACAATTT 57.025 29.630 0.00 0.00 0.00 1.82
2397 2646 8.800370 TTTGTTGCATCAATTATACTGTAGGA 57.200 30.769 10.87 0.00 0.00 2.94
2398 2647 7.786178 TGTTGCATCAATTATACTGTAGGAC 57.214 36.000 0.00 0.00 0.00 3.85
2399 2648 7.334858 TGTTGCATCAATTATACTGTAGGACA 58.665 34.615 0.00 0.00 0.00 4.02
2400 2649 7.826744 TGTTGCATCAATTATACTGTAGGACAA 59.173 33.333 0.00 0.00 0.00 3.18
2630 2991 2.024464 TCTTCTCCTCTTCCTCTCCCTG 60.024 54.545 0.00 0.00 0.00 4.45
2769 3197 0.743097 CCTAACGGCGGCTACTACTT 59.257 55.000 13.24 0.00 0.00 2.24
2818 3246 1.682684 CCTCGGCACCTACAGGACT 60.683 63.158 1.29 0.00 38.94 3.85
3032 3461 4.489771 GGGTCATGGCGGAGTGGG 62.490 72.222 0.00 0.00 0.00 4.61
3127 3560 2.526873 AGGAGCGGTTGGACAGGT 60.527 61.111 0.00 0.00 0.00 4.00
3189 3623 2.147387 AGCAGGTGGGAGGTCGTTT 61.147 57.895 0.00 0.00 0.00 3.60
3233 3667 6.476378 GTTGGTTGGACATATGGCTAGATAT 58.524 40.000 8.85 0.00 0.00 1.63
3245 3679 3.011119 GGCTAGATATCTCGGACGACAT 58.989 50.000 8.95 0.00 0.00 3.06
3305 3750 9.145865 GTAGTTTTCTATGCAATCTATCTAGGC 57.854 37.037 0.00 0.00 34.69 3.93
3306 3751 7.164803 AGTTTTCTATGCAATCTATCTAGGCC 58.835 38.462 0.00 0.00 0.00 5.19
3307 3752 6.942163 TTTCTATGCAATCTATCTAGGCCT 57.058 37.500 11.78 11.78 0.00 5.19
3308 3753 6.537453 TTCTATGCAATCTATCTAGGCCTC 57.463 41.667 9.68 0.00 0.00 4.70
3309 3754 4.959210 TCTATGCAATCTATCTAGGCCTCC 59.041 45.833 9.68 0.00 0.00 4.30
3310 3755 3.266477 TGCAATCTATCTAGGCCTCCT 57.734 47.619 9.68 0.00 37.71 3.69
3311 3756 3.591789 TGCAATCTATCTAGGCCTCCTT 58.408 45.455 9.68 0.00 34.61 3.36
3312 3757 3.976654 TGCAATCTATCTAGGCCTCCTTT 59.023 43.478 9.68 0.00 34.61 3.11
3313 3758 4.202398 TGCAATCTATCTAGGCCTCCTTTG 60.202 45.833 9.68 6.34 34.61 2.77
3314 3759 4.805609 GCAATCTATCTAGGCCTCCTTTGG 60.806 50.000 9.68 0.00 34.61 3.28
3315 3760 3.708236 TCTATCTAGGCCTCCTTTGGT 57.292 47.619 9.68 0.00 34.61 3.67
3316 3761 4.008916 TCTATCTAGGCCTCCTTTGGTT 57.991 45.455 9.68 0.00 34.61 3.67
3317 3762 4.371681 TCTATCTAGGCCTCCTTTGGTTT 58.628 43.478 9.68 0.00 34.61 3.27
3318 3763 5.535029 TCTATCTAGGCCTCCTTTGGTTTA 58.465 41.667 9.68 0.00 34.61 2.01
3319 3764 4.779993 ATCTAGGCCTCCTTTGGTTTAG 57.220 45.455 9.68 0.00 34.61 1.85
3320 3765 3.798515 TCTAGGCCTCCTTTGGTTTAGA 58.201 45.455 9.68 0.00 34.61 2.10
3321 3766 3.775316 TCTAGGCCTCCTTTGGTTTAGAG 59.225 47.826 9.68 0.00 34.61 2.43
3330 3775 7.709149 CTCCTTTGGTTTAGAGGAATTTCAT 57.291 36.000 0.00 0.00 39.00 2.57
3331 3776 8.807948 CTCCTTTGGTTTAGAGGAATTTCATA 57.192 34.615 0.00 0.00 39.00 2.15
3332 3777 8.807948 TCCTTTGGTTTAGAGGAATTTCATAG 57.192 34.615 0.00 0.00 36.67 2.23
3333 3778 7.834181 TCCTTTGGTTTAGAGGAATTTCATAGG 59.166 37.037 0.00 0.00 36.67 2.57
3334 3779 7.834181 CCTTTGGTTTAGAGGAATTTCATAGGA 59.166 37.037 0.00 0.00 32.11 2.94
3335 3780 9.243105 CTTTGGTTTAGAGGAATTTCATAGGAA 57.757 33.333 0.00 0.00 0.00 3.36
3336 3781 9.768215 TTTGGTTTAGAGGAATTTCATAGGAAT 57.232 29.630 0.00 0.00 31.93 3.01
3337 3782 9.768215 TTGGTTTAGAGGAATTTCATAGGAATT 57.232 29.630 0.00 0.00 31.93 2.17
3338 3783 9.408648 TGGTTTAGAGGAATTTCATAGGAATTC 57.591 33.333 0.00 0.00 31.93 2.17
3339 3784 9.634021 GGTTTAGAGGAATTTCATAGGAATTCT 57.366 33.333 5.23 0.00 31.93 2.40
3344 3789 8.879227 AGAGGAATTTCATAGGAATTCTAGAGG 58.121 37.037 5.23 0.00 31.93 3.69
3345 3790 8.805145 AGGAATTTCATAGGAATTCTAGAGGA 57.195 34.615 5.23 0.00 31.93 3.71
3346 3791 9.404077 AGGAATTTCATAGGAATTCTAGAGGAT 57.596 33.333 5.23 0.00 31.93 3.24
3353 3798 9.707957 TCATAGGAATTCTAGAGGATAGGATTC 57.292 37.037 5.23 7.20 38.32 2.52
3354 3799 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
3386 3831 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
3387 3832 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
3388 3833 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
3389 3834 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
3390 3835 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
3391 3836 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
3392 3837 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
3393 3838 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
3394 3839 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
3395 3840 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
3396 3841 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
3397 3842 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
3398 3843 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
3399 3844 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
3400 3845 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
3401 3846 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
3402 3847 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
3426 3871 7.974504 TCCTATTCTTACATAGGATTGGTTCC 58.025 38.462 5.49 0.00 46.83 3.62
3436 3881 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
3437 3882 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
3438 3883 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
3439 3884 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
3440 3885 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
3441 3886 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
3442 3887 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
3443 3888 4.478317 TGGTTCCTATCCTCCACATTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
3444 3889 5.669904 TGGTTCCTATCCTCCACATTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
3445 3890 6.183361 TGGTTCCTATCCTCCACATTTCATAG 60.183 42.308 0.00 0.00 0.00 2.23
3446 3891 6.234177 GTTCCTATCCTCCACATTTCATAGG 58.766 44.000 0.00 0.00 35.93 2.57
3447 3892 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
3448 3893 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
3449 3894 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
3450 3895 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
3451 3896 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.422214 TTGACAGATTTCCTTCTACTCCC 57.578 43.478 0.00 0.00 0.00 4.30
5 6 8.760980 TTTCCTTTTTGACAGATTTCCTTCTA 57.239 30.769 0.00 0.00 0.00 2.10
6 7 7.660030 TTTCCTTTTTGACAGATTTCCTTCT 57.340 32.000 0.00 0.00 0.00 2.85
7 8 9.981114 TTATTTCCTTTTTGACAGATTTCCTTC 57.019 29.630 0.00 0.00 0.00 3.46
34 35 7.770201 TCAACTTCAGAATCAAAATGTGTTCA 58.230 30.769 0.00 0.00 0.00 3.18
48 49 5.513788 CCCCTCTGAGATTTCAACTTCAGAA 60.514 44.000 6.17 0.00 34.41 3.02
56 57 2.376518 AGCAACCCCTCTGAGATTTCAA 59.623 45.455 6.17 0.00 31.69 2.69
58 59 2.290577 ACAGCAACCCCTCTGAGATTTC 60.291 50.000 6.17 0.00 34.57 2.17
68 69 1.357272 TGGGTGTTACAGCAACCCCT 61.357 55.000 16.50 0.00 45.36 4.79
79 80 2.043992 ACGGCTATGCTATGGGTGTTA 58.956 47.619 0.00 0.00 0.00 2.41
85 86 3.740115 AGGTAAAACGGCTATGCTATGG 58.260 45.455 0.00 0.00 0.00 2.74
86 87 4.632153 AGAGGTAAAACGGCTATGCTATG 58.368 43.478 0.00 0.00 0.00 2.23
98 100 8.664211 TGAAGAAGAAGAAGAAGAGGTAAAAC 57.336 34.615 0.00 0.00 0.00 2.43
133 135 8.533569 ACCATATTAGGGTGGAAATTTACAAG 57.466 34.615 4.20 0.00 37.23 3.16
163 165 3.255888 CCCTAAGAAAAGGAGGCAACAAC 59.744 47.826 0.00 0.00 39.15 3.32
182 190 8.475639 CATGATTCAGATCAGAAATTTTTCCCT 58.524 33.333 4.51 0.00 45.01 4.20
184 192 7.224167 GCCATGATTCAGATCAGAAATTTTTCC 59.776 37.037 4.51 0.00 45.01 3.13
192 200 5.072736 ACCTATGCCATGATTCAGATCAGAA 59.927 40.000 2.74 2.74 45.01 3.02
209 217 2.158900 TCAGGAGCAGCTAAACCTATGC 60.159 50.000 0.00 0.00 38.97 3.14
221 229 4.108699 GCTAGTAGCATATCAGGAGCAG 57.891 50.000 17.47 0.00 41.89 4.24
262 272 1.122019 ACGAGGGAGCTGTTCCTTGT 61.122 55.000 10.49 12.23 45.98 3.16
266 276 0.530870 GCATACGAGGGAGCTGTTCC 60.531 60.000 1.35 1.35 46.00 3.62
275 285 5.178252 CAGTTTATCATTCAGCATACGAGGG 59.822 44.000 0.00 0.00 0.00 4.30
277 287 7.468922 TTCAGTTTATCATTCAGCATACGAG 57.531 36.000 0.00 0.00 0.00 4.18
312 322 1.488393 GTCCCTAGCTGCAATCCTTCT 59.512 52.381 1.02 0.00 0.00 2.85
325 335 4.788679 ACCAATTTTAATCCCGTCCCTAG 58.211 43.478 0.00 0.00 0.00 3.02
329 339 3.512329 ACCAACCAATTTTAATCCCGTCC 59.488 43.478 0.00 0.00 0.00 4.79
330 340 4.794278 ACCAACCAATTTTAATCCCGTC 57.206 40.909 0.00 0.00 0.00 4.79
359 370 1.283613 TCCACACCCCACCATGATTAC 59.716 52.381 0.00 0.00 0.00 1.89
385 396 1.251251 GTCACTTGCTGCATTCCCTT 58.749 50.000 1.84 0.00 0.00 3.95
456 473 0.110486 TCTTGGTGAACCCCAGCTTC 59.890 55.000 0.00 0.00 43.38 3.86
478 495 1.002069 TCTGGATTTGCCTGGATGGT 58.998 50.000 0.00 0.00 38.35 3.55
492 509 8.418597 ACTATACAAAGTAAACAGAGTCTGGA 57.581 34.615 23.79 6.34 35.51 3.86
509 526 4.441079 GGAGAACGCCTGCTTACTATACAA 60.441 45.833 0.00 0.00 0.00 2.41
512 529 3.563223 AGGAGAACGCCTGCTTACTATA 58.437 45.455 0.00 0.00 41.04 1.31
514 531 1.749634 GAGGAGAACGCCTGCTTACTA 59.250 52.381 1.24 0.00 44.09 1.82
517 573 1.511305 CGAGGAGAACGCCTGCTTA 59.489 57.895 1.24 0.00 44.09 3.09
615 671 2.102578 CAGGATCAATGGAAACCCACC 58.897 52.381 0.00 0.00 36.36 4.61
623 679 3.588842 ACAAAGACCTCAGGATCAATGGA 59.411 43.478 0.00 0.00 0.00 3.41
635 691 7.095899 GCAAAATGAGAATTTCACAAAGACCTC 60.096 37.037 0.60 0.00 38.99 3.85
645 701 8.834749 TTTCATCATGCAAAATGAGAATTTCA 57.165 26.923 12.49 0.00 40.85 2.69
646 702 9.916397 GATTTCATCATGCAAAATGAGAATTTC 57.084 29.630 12.49 3.00 33.66 2.17
684 740 4.220382 CCAGTCAACTTTTGGCCAATATCA 59.780 41.667 21.26 0.00 35.39 2.15
685 741 4.220602 ACCAGTCAACTTTTGGCCAATATC 59.779 41.667 21.26 6.15 35.39 1.63
688 744 2.397597 ACCAGTCAACTTTTGGCCAAT 58.602 42.857 21.26 0.42 35.39 3.16
695 791 4.331968 TGTGAGTGAACCAGTCAACTTTT 58.668 39.130 6.10 0.00 44.06 2.27
707 803 5.784177 TGATCTTACCTTCTGTGAGTGAAC 58.216 41.667 0.00 0.00 32.58 3.18
748 852 3.008375 TGGAAGATTGAGGTCCACAAGAG 59.992 47.826 7.82 0.00 36.51 2.85
754 858 0.620556 GCCTGGAAGATTGAGGTCCA 59.379 55.000 0.00 0.00 39.14 4.02
757 861 2.122768 CCTAGCCTGGAAGATTGAGGT 58.877 52.381 0.00 0.00 34.07 3.85
777 910 6.538742 AGCAAGTACATGTATGTATCCACAAC 59.461 38.462 9.18 0.00 44.25 3.32
792 925 6.294176 GGAAAAACATGTCTCAGCAAGTACAT 60.294 38.462 0.00 0.00 32.91 2.29
793 926 5.008613 GGAAAAACATGTCTCAGCAAGTACA 59.991 40.000 0.00 0.00 0.00 2.90
815 977 7.013655 GCTGATTCCTGCTAATTGAATTAAGGA 59.986 37.037 12.23 12.23 32.56 3.36
825 987 5.018809 TGGAAAAGCTGATTCCTGCTAATT 58.981 37.500 24.40 0.00 45.16 1.40
863 1025 2.251409 AATCGGCCATGAGTCATCAG 57.749 50.000 1.56 0.00 39.29 2.90
902 1072 7.834803 TCATGCATTTACAACACCATTCAATA 58.165 30.769 0.00 0.00 0.00 1.90
915 1085 6.262944 GGTCAGGTCATATTCATGCATTTACA 59.737 38.462 0.00 0.00 31.73 2.41
929 1099 4.721776 AGGATGCTTAAAGGTCAGGTCATA 59.278 41.667 0.00 0.00 0.00 2.15
1006 1176 2.024369 TGGAGTATAGTGGAGGCAGTGA 60.024 50.000 0.00 0.00 0.00 3.41
1178 1354 1.074752 CTCTTCGTTCAGCTTGCTCC 58.925 55.000 0.00 0.00 0.00 4.70
1218 1444 4.838152 CCCCACGATGGCGAGGTG 62.838 72.222 0.00 0.00 45.26 4.00
1320 1555 1.067142 GTCACCCGCTCATAACACTCA 60.067 52.381 0.00 0.00 0.00 3.41
1477 1712 3.063180 GCAAGAACGATGTTCTGGATCAG 59.937 47.826 16.34 4.10 0.00 2.90
1533 1768 2.651334 AGGCGGGTAGTAGTATATCCCA 59.349 50.000 0.00 0.00 38.15 4.37
1737 1981 2.033141 TTGAGGCAGAGCAGGCAC 59.967 61.111 0.00 0.00 36.37 5.01
1779 2023 2.619849 GGGTTAAAAGTACTCCTGGCCC 60.620 54.545 0.00 2.40 0.00 5.80
1850 2094 0.390860 GAGCGGCTACATCACCATCT 59.609 55.000 0.60 0.00 0.00 2.90
1898 2142 6.138761 GCGTCTGCTAAAATTCTTATGATGG 58.861 40.000 0.00 0.00 38.39 3.51
1940 2184 2.291209 TTCCAAATCCTTGCAGCAGA 57.709 45.000 0.00 0.00 0.00 4.26
1957 2201 6.581166 CGCTGTTAAAGGTCCATTTTACTTTC 59.419 38.462 0.00 0.00 35.11 2.62
1960 2204 5.067954 ACGCTGTTAAAGGTCCATTTTACT 58.932 37.500 0.00 0.00 0.00 2.24
2017 2261 0.387202 ATCATCTGAAGCTCGACCCG 59.613 55.000 0.00 0.00 0.00 5.28
2033 2277 4.099573 TGCCTTTTCCCGTTGTTTTAATCA 59.900 37.500 0.00 0.00 0.00 2.57
2044 2288 2.159382 CAGTTGTATGCCTTTTCCCGT 58.841 47.619 0.00 0.00 0.00 5.28
2045 2289 2.432444 TCAGTTGTATGCCTTTTCCCG 58.568 47.619 0.00 0.00 0.00 5.14
2048 2292 5.181245 TGCTAGTTCAGTTGTATGCCTTTTC 59.819 40.000 0.00 0.00 0.00 2.29
2051 2295 4.003648 GTGCTAGTTCAGTTGTATGCCTT 58.996 43.478 0.00 0.00 0.00 4.35
2052 2296 3.261897 AGTGCTAGTTCAGTTGTATGCCT 59.738 43.478 0.00 0.00 0.00 4.75
2054 2298 4.499183 AGAGTGCTAGTTCAGTTGTATGC 58.501 43.478 0.00 0.00 0.00 3.14
2055 2299 5.714047 TGAGAGTGCTAGTTCAGTTGTATG 58.286 41.667 0.00 0.00 0.00 2.39
2056 2300 5.984695 TGAGAGTGCTAGTTCAGTTGTAT 57.015 39.130 0.00 0.00 0.00 2.29
2057 2301 5.068591 TGTTGAGAGTGCTAGTTCAGTTGTA 59.931 40.000 0.00 0.00 0.00 2.41
2058 2302 4.141937 TGTTGAGAGTGCTAGTTCAGTTGT 60.142 41.667 0.00 0.00 0.00 3.32
2059 2303 4.371786 TGTTGAGAGTGCTAGTTCAGTTG 58.628 43.478 0.00 0.00 0.00 3.16
2060 2304 4.672587 TGTTGAGAGTGCTAGTTCAGTT 57.327 40.909 0.00 0.00 0.00 3.16
2061 2305 4.281941 TCATGTTGAGAGTGCTAGTTCAGT 59.718 41.667 0.00 0.00 0.00 3.41
2062 2306 4.814147 TCATGTTGAGAGTGCTAGTTCAG 58.186 43.478 0.00 0.00 0.00 3.02
2063 2307 4.871933 TCATGTTGAGAGTGCTAGTTCA 57.128 40.909 0.00 0.00 0.00 3.18
2075 2319 7.549615 TTAATCATCTGAAGCTCATGTTGAG 57.450 36.000 0.08 0.08 46.90 3.02
2076 2320 7.926674 TTTAATCATCTGAAGCTCATGTTGA 57.073 32.000 0.00 0.00 0.00 3.18
2079 2323 7.692460 TGTTTTAATCATCTGAAGCTCATGT 57.308 32.000 0.00 0.00 0.00 3.21
2083 2327 6.024049 CCGTTGTTTTAATCATCTGAAGCTC 58.976 40.000 0.00 0.00 0.00 4.09
2085 2329 5.095490 CCCGTTGTTTTAATCATCTGAAGC 58.905 41.667 0.00 0.00 0.00 3.86
2087 2331 6.885952 TTCCCGTTGTTTTAATCATCTGAA 57.114 33.333 0.00 0.00 0.00 3.02
2088 2332 6.885952 TTTCCCGTTGTTTTAATCATCTGA 57.114 33.333 0.00 0.00 0.00 3.27
2089 2333 7.090173 ACATTTCCCGTTGTTTTAATCATCTG 58.910 34.615 0.00 0.00 0.00 2.90
2091 2335 7.728895 CAACATTTCCCGTTGTTTTAATCATC 58.271 34.615 0.00 0.00 39.11 2.92
2105 2349 2.099098 GCCCATCTTACAACATTTCCCG 59.901 50.000 0.00 0.00 0.00 5.14
2107 2351 3.096092 TGGCCCATCTTACAACATTTCC 58.904 45.455 0.00 0.00 0.00 3.13
2114 2358 4.165180 TGCTATTAGTGGCCCATCTTACAA 59.835 41.667 0.00 0.00 0.00 2.41
2115 2359 3.714280 TGCTATTAGTGGCCCATCTTACA 59.286 43.478 0.00 0.00 0.00 2.41
2116 2360 4.065789 GTGCTATTAGTGGCCCATCTTAC 58.934 47.826 0.00 0.00 0.00 2.34
2124 2368 2.710096 TGAAGGTGCTATTAGTGGCC 57.290 50.000 0.00 0.00 0.00 5.36
2129 2373 6.763355 ACTCCACATATGAAGGTGCTATTAG 58.237 40.000 10.38 5.17 36.08 1.73
2139 2383 4.264253 TGCCTGAAACTCCACATATGAAG 58.736 43.478 10.38 6.37 0.00 3.02
2143 2387 5.372343 TGTATGCCTGAAACTCCACATAT 57.628 39.130 0.00 0.00 0.00 1.78
2159 2403 4.499183 AGAGTGCTAGTTCAGTTGTATGC 58.501 43.478 0.00 0.00 0.00 3.14
2175 2422 1.063174 GCCGAATCATGTTGAGAGTGC 59.937 52.381 0.00 0.00 0.00 4.40
2185 2432 3.186001 GCAGATAGACTTGCCGAATCATG 59.814 47.826 0.00 0.00 0.00 3.07
2223 2470 0.818040 AATCGATTACCCTTGGGCGC 60.818 55.000 9.39 0.00 0.00 6.53
2233 2480 4.785341 GCAACGACATCCCAAATCGATTAC 60.785 45.833 11.83 0.00 39.16 1.89
2247 2494 2.066262 CCTTACGAAGTGCAACGACAT 58.934 47.619 14.32 0.00 45.73 3.06
2248 2495 1.202440 ACCTTACGAAGTGCAACGACA 60.202 47.619 14.32 1.66 45.73 4.35
2252 2499 7.117379 AGAGTTATTTACCTTACGAAGTGCAAC 59.883 37.037 0.00 0.00 45.73 4.17
2279 2528 5.128663 TGCCTTAGTCTGCATGTACTTGATA 59.871 40.000 12.65 0.32 31.31 2.15
2280 2529 4.080919 TGCCTTAGTCTGCATGTACTTGAT 60.081 41.667 12.65 0.00 31.31 2.57
2281 2530 3.260632 TGCCTTAGTCTGCATGTACTTGA 59.739 43.478 12.65 0.00 31.31 3.02
2282 2531 3.599343 TGCCTTAGTCTGCATGTACTTG 58.401 45.455 4.42 4.42 31.31 3.16
2284 2533 4.502259 GCTATGCCTTAGTCTGCATGTACT 60.502 45.833 7.20 0.00 46.99 2.73
2285 2534 3.743396 GCTATGCCTTAGTCTGCATGTAC 59.257 47.826 7.20 0.00 46.99 2.90
2286 2535 3.244215 GGCTATGCCTTAGTCTGCATGTA 60.244 47.826 7.20 0.00 46.99 2.29
2287 2536 2.486191 GGCTATGCCTTAGTCTGCATGT 60.486 50.000 7.20 0.00 46.99 3.21
2288 2537 2.149578 GGCTATGCCTTAGTCTGCATG 58.850 52.381 7.20 0.00 46.99 4.06
2301 2550 4.381411 CCCTTTCTAACACTAGGCTATGC 58.619 47.826 0.00 0.00 0.00 3.14
2302 2551 4.743955 GCCCCTTTCTAACACTAGGCTATG 60.744 50.000 0.00 0.00 36.22 2.23
2303 2552 3.391626 GCCCCTTTCTAACACTAGGCTAT 59.608 47.826 0.00 0.00 36.22 2.97
2304 2553 2.770232 GCCCCTTTCTAACACTAGGCTA 59.230 50.000 0.00 0.00 36.22 3.93
2305 2554 1.560146 GCCCCTTTCTAACACTAGGCT 59.440 52.381 0.00 0.00 36.22 4.58
2306 2555 1.560146 AGCCCCTTTCTAACACTAGGC 59.440 52.381 0.00 0.00 39.49 3.93
2307 2556 2.838202 TGAGCCCCTTTCTAACACTAGG 59.162 50.000 0.00 0.00 0.00 3.02
2308 2557 4.446371 CATGAGCCCCTTTCTAACACTAG 58.554 47.826 0.00 0.00 0.00 2.57
2309 2558 3.370527 GCATGAGCCCCTTTCTAACACTA 60.371 47.826 0.00 0.00 33.58 2.74
2310 2559 2.619074 GCATGAGCCCCTTTCTAACACT 60.619 50.000 0.00 0.00 33.58 3.55
2311 2560 1.745653 GCATGAGCCCCTTTCTAACAC 59.254 52.381 0.00 0.00 33.58 3.32
2312 2561 2.128771 GCATGAGCCCCTTTCTAACA 57.871 50.000 0.00 0.00 33.58 2.41
2324 2573 2.440980 GGGTGGGAAGGCATGAGC 60.441 66.667 0.00 0.00 41.10 4.26
2325 2574 1.379044 GTGGGTGGGAAGGCATGAG 60.379 63.158 0.00 0.00 0.00 2.90
2326 2575 2.763215 GTGGGTGGGAAGGCATGA 59.237 61.111 0.00 0.00 0.00 3.07
2327 2576 2.362889 GGTGGGTGGGAAGGCATG 60.363 66.667 0.00 0.00 0.00 4.06
2328 2577 3.672503 GGGTGGGTGGGAAGGCAT 61.673 66.667 0.00 0.00 0.00 4.40
2329 2578 4.938756 AGGGTGGGTGGGAAGGCA 62.939 66.667 0.00 0.00 0.00 4.75
2330 2579 4.048470 GAGGGTGGGTGGGAAGGC 62.048 72.222 0.00 0.00 0.00 4.35
2331 2580 1.930656 ATGAGGGTGGGTGGGAAGG 60.931 63.158 0.00 0.00 0.00 3.46
2332 2581 1.304282 CATGAGGGTGGGTGGGAAG 59.696 63.158 0.00 0.00 0.00 3.46
2333 2582 1.071314 AACATGAGGGTGGGTGGGAA 61.071 55.000 0.00 0.00 0.00 3.97
2334 2583 1.465188 AACATGAGGGTGGGTGGGA 60.465 57.895 0.00 0.00 0.00 4.37
2335 2584 1.000896 GAACATGAGGGTGGGTGGG 60.001 63.158 0.00 0.00 0.00 4.61
2336 2585 1.285280 TAGAACATGAGGGTGGGTGG 58.715 55.000 0.00 0.00 0.00 4.61
2337 2586 3.652057 AATAGAACATGAGGGTGGGTG 57.348 47.619 0.00 0.00 0.00 4.61
2338 2587 4.371681 AGTAATAGAACATGAGGGTGGGT 58.628 43.478 0.00 0.00 0.00 4.51
2339 2588 5.373812 AAGTAATAGAACATGAGGGTGGG 57.626 43.478 0.00 0.00 0.00 4.61
2340 2589 6.884832 TGTAAGTAATAGAACATGAGGGTGG 58.115 40.000 0.00 0.00 0.00 4.61
2341 2590 8.964476 ATTGTAAGTAATAGAACATGAGGGTG 57.036 34.615 0.00 0.00 0.00 4.61
2342 2591 9.975218 AAATTGTAAGTAATAGAACATGAGGGT 57.025 29.630 0.00 0.00 0.00 4.34
2371 2620 9.407380 TCCTACAGTATAATTGATGCAACAAAT 57.593 29.630 13.75 8.00 33.44 2.32
2372 2621 8.673711 GTCCTACAGTATAATTGATGCAACAAA 58.326 33.333 13.75 0.00 33.44 2.83
2373 2622 7.826744 TGTCCTACAGTATAATTGATGCAACAA 59.173 33.333 12.12 12.12 0.00 2.83
2374 2623 7.334858 TGTCCTACAGTATAATTGATGCAACA 58.665 34.615 0.00 0.00 0.00 3.33
2375 2624 7.786178 TGTCCTACAGTATAATTGATGCAAC 57.214 36.000 0.00 0.00 0.00 4.17
2376 2625 8.978874 ATTGTCCTACAGTATAATTGATGCAA 57.021 30.769 0.00 0.00 0.00 4.08
2381 2630 9.982651 GCTCTTATTGTCCTACAGTATAATTGA 57.017 33.333 0.00 0.00 0.00 2.57
2382 2631 9.764363 TGCTCTTATTGTCCTACAGTATAATTG 57.236 33.333 0.00 0.00 0.00 2.32
2384 2633 9.765795 GTTGCTCTTATTGTCCTACAGTATAAT 57.234 33.333 0.00 0.00 0.00 1.28
2385 2634 8.978472 AGTTGCTCTTATTGTCCTACAGTATAA 58.022 33.333 0.00 0.00 0.00 0.98
2386 2635 8.534954 AGTTGCTCTTATTGTCCTACAGTATA 57.465 34.615 0.00 0.00 0.00 1.47
2387 2636 7.418025 GGAGTTGCTCTTATTGTCCTACAGTAT 60.418 40.741 0.00 0.00 0.00 2.12
2388 2637 6.127423 GGAGTTGCTCTTATTGTCCTACAGTA 60.127 42.308 0.00 0.00 0.00 2.74
2389 2638 5.337652 GGAGTTGCTCTTATTGTCCTACAGT 60.338 44.000 0.00 0.00 0.00 3.55
2390 2639 5.112686 GGAGTTGCTCTTATTGTCCTACAG 58.887 45.833 0.00 0.00 0.00 2.74
2391 2640 4.530553 TGGAGTTGCTCTTATTGTCCTACA 59.469 41.667 0.00 0.00 0.00 2.74
2392 2641 5.086104 TGGAGTTGCTCTTATTGTCCTAC 57.914 43.478 0.00 0.00 0.00 3.18
2393 2642 5.488341 GTTGGAGTTGCTCTTATTGTCCTA 58.512 41.667 0.00 0.00 0.00 2.94
2394 2643 4.327680 GTTGGAGTTGCTCTTATTGTCCT 58.672 43.478 0.00 0.00 0.00 3.85
2395 2644 3.125316 CGTTGGAGTTGCTCTTATTGTCC 59.875 47.826 0.00 0.00 0.00 4.02
2396 2645 3.125316 CCGTTGGAGTTGCTCTTATTGTC 59.875 47.826 0.00 0.00 0.00 3.18
2397 2646 3.074412 CCGTTGGAGTTGCTCTTATTGT 58.926 45.455 0.00 0.00 0.00 2.71
2398 2647 2.159517 GCCGTTGGAGTTGCTCTTATTG 60.160 50.000 0.00 0.00 0.00 1.90
2399 2648 2.084546 GCCGTTGGAGTTGCTCTTATT 58.915 47.619 0.00 0.00 0.00 1.40
2400 2649 1.679032 GGCCGTTGGAGTTGCTCTTAT 60.679 52.381 0.00 0.00 0.00 1.73
2533 2844 1.805945 CGAGCTAGCGCCTTTTCGT 60.806 57.895 13.17 0.00 36.60 3.85
2545 2856 2.550487 AAAAATGGCACGCGAGCTA 58.450 47.368 26.94 22.56 34.17 3.32
2591 2945 2.282180 GGAGGCGTGGAAAAGGCA 60.282 61.111 0.00 0.00 41.59 4.75
3127 3560 1.675310 CCAATGCCTTCTGCCGACA 60.675 57.895 0.00 0.00 40.16 4.35
3157 3591 2.125552 TGCTGCAACGAGATCGGG 60.126 61.111 0.00 0.00 44.95 5.14
3245 3679 2.825532 TCATCATTATCATCCTCGGCGA 59.174 45.455 10.14 10.14 0.00 5.54
3304 3749 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
3305 3750 6.010219 TGAAATTCCTCTAAACCAAAGGAGG 58.990 40.000 0.00 0.00 44.69 4.30
3306 3751 7.709149 ATGAAATTCCTCTAAACCAAAGGAG 57.291 36.000 0.00 0.00 40.21 3.69
3307 3752 7.834181 CCTATGAAATTCCTCTAAACCAAAGGA 59.166 37.037 0.00 0.00 37.42 3.36
3308 3753 7.834181 TCCTATGAAATTCCTCTAAACCAAAGG 59.166 37.037 0.00 0.00 0.00 3.11
3309 3754 8.807948 TCCTATGAAATTCCTCTAAACCAAAG 57.192 34.615 0.00 0.00 0.00 2.77
3310 3755 9.768215 ATTCCTATGAAATTCCTCTAAACCAAA 57.232 29.630 0.00 0.00 33.32 3.28
3311 3756 9.768215 AATTCCTATGAAATTCCTCTAAACCAA 57.232 29.630 0.00 0.00 33.32 3.67
3312 3757 9.408648 GAATTCCTATGAAATTCCTCTAAACCA 57.591 33.333 0.00 0.00 33.32 3.67
3313 3758 9.634021 AGAATTCCTATGAAATTCCTCTAAACC 57.366 33.333 0.65 0.00 33.32 3.27
3318 3763 8.879227 CCTCTAGAATTCCTATGAAATTCCTCT 58.121 37.037 0.65 0.00 33.32 3.69
3319 3764 8.875168 TCCTCTAGAATTCCTATGAAATTCCTC 58.125 37.037 0.65 0.00 33.32 3.71
3320 3765 8.805145 TCCTCTAGAATTCCTATGAAATTCCT 57.195 34.615 0.65 0.00 33.32 3.36
3327 3772 9.707957 GAATCCTATCCTCTAGAATTCCTATGA 57.292 37.037 0.65 0.00 0.00 2.15
3328 3773 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
3364 3809 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
3365 3810 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
3366 3811 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
3367 3812 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
3368 3813 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
3369 3814 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
3370 3815 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
3371 3816 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
3372 3817 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
3373 3818 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
3374 3819 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
3375 3820 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
3376 3821 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
3377 3822 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
3378 3823 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
3379 3824 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
3417 3862 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
3418 3863 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
3419 3864 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
3420 3865 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
3421 3866 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
3422 3867 6.043243 TCCTATGAAATGTGGAGGATAGGAAC 59.957 42.308 0.00 0.00 38.86 3.62
3423 3868 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
3424 3869 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
3425 3870 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
3426 3871 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.