Multiple sequence alignment - TraesCS5A01G372000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G372000 chr5A 100.000 3401 0 0 1 3401 570507629 570511029 0.000000e+00 6281.0
1 TraesCS5A01G372000 chr5A 90.370 135 10 3 2837 2969 664849627 664849494 1.250000e-39 174.0
2 TraesCS5A01G372000 chr5A 87.671 73 3 3 2793 2862 570510487 570510418 2.810000e-11 80.5
3 TraesCS5A01G372000 chr5D 92.474 2777 148 27 66 2799 451683285 451686043 0.000000e+00 3914.0
4 TraesCS5A01G372000 chr5D 92.157 255 18 2 2967 3220 451686045 451686298 3.230000e-95 359.0
5 TraesCS5A01G372000 chr5B 90.798 2608 151 34 268 2821 551508271 551510843 0.000000e+00 3404.0
6 TraesCS5A01G372000 chr5B 93.548 279 17 1 2967 3244 551510853 551511131 6.790000e-112 414.0
7 TraesCS5A01G372000 chr5B 85.714 189 16 6 72 253 551507991 551508175 4.480000e-44 189.0
8 TraesCS5A01G372000 chr5B 85.806 155 22 0 2262 2416 681879698 681879852 7.550000e-37 165.0
9 TraesCS5A01G372000 chr5B 94.030 67 4 0 2558 2624 551511577 551511643 6.000000e-18 102.0
10 TraesCS5A01G372000 chr5B 94.737 38 2 0 2825 2862 551510849 551510812 3.670000e-05 60.2
11 TraesCS5A01G372000 chr7A 87.965 565 63 5 2027 2587 635690017 635690580 0.000000e+00 662.0
12 TraesCS5A01G372000 chr7A 95.614 114 5 0 2860 2973 133053338 133053225 2.080000e-42 183.0
13 TraesCS5A01G372000 chr7B 87.640 534 58 6 2057 2587 594961169 594961697 6.240000e-172 614.0
14 TraesCS5A01G372000 chr7B 97.273 110 3 0 2860 2969 559142192 559142301 1.610000e-43 187.0
15 TraesCS5A01G372000 chr3B 96.460 113 4 0 2860 2972 15806515 15806627 1.610000e-43 187.0
16 TraesCS5A01G372000 chr3B 85.806 155 22 0 2262 2416 165911194 165911040 7.550000e-37 165.0
17 TraesCS5A01G372000 chr3B 100.000 33 0 0 2825 2857 18776172 18776204 1.020000e-05 62.1
18 TraesCS5A01G372000 chr7D 95.652 115 5 0 2860 2974 598013060 598012946 5.800000e-43 185.0
19 TraesCS5A01G372000 chr4A 94.915 118 5 1 2854 2970 132996377 132996260 2.080000e-42 183.0
20 TraesCS5A01G372000 chr1A 95.652 115 4 1 2856 2969 343396810 343396696 2.080000e-42 183.0
21 TraesCS5A01G372000 chr4B 94.118 119 7 0 2856 2974 565865848 565865966 7.500000e-42 182.0
22 TraesCS5A01G372000 chr6A 87.838 148 13 4 2828 2970 150232094 150231947 5.840000e-38 169.0
23 TraesCS5A01G372000 chr6B 85.806 155 22 0 2262 2416 274476171 274476017 7.550000e-37 165.0
24 TraesCS5A01G372000 chr2D 85.806 155 22 0 2262 2416 617894338 617894492 7.550000e-37 165.0
25 TraesCS5A01G372000 chr1B 85.806 155 22 0 2262 2416 82987653 82987807 7.550000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G372000 chr5A 570507629 570511029 3400 False 6281.00 6281 100.0000 1 3401 1 chr5A.!!$F1 3400
1 TraesCS5A01G372000 chr5D 451683285 451686298 3013 False 2136.50 3914 92.3155 66 3220 2 chr5D.!!$F1 3154
2 TraesCS5A01G372000 chr5B 551507991 551511643 3652 False 1027.25 3404 91.0225 72 3244 4 chr5B.!!$F2 3172
3 TraesCS5A01G372000 chr7A 635690017 635690580 563 False 662.00 662 87.9650 2027 2587 1 chr7A.!!$F1 560
4 TraesCS5A01G372000 chr7B 594961169 594961697 528 False 614.00 614 87.6400 2057 2587 1 chr7B.!!$F2 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 1082 0.17907 GGAGCAAGACGAATCCCTCC 60.179 60.0 0.0 0.0 31.71 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2947 3108 0.179065 CCCCCTCCGTTCCGAATTAC 60.179 60.0 0.0 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.949031 CTGCTAACTACGAGGAGGC 57.051 57.895 0.00 0.00 0.00 4.70
19 20 1.103803 CTGCTAACTACGAGGAGGCA 58.896 55.000 0.00 0.00 0.00 4.75
20 21 1.066303 CTGCTAACTACGAGGAGGCAG 59.934 57.143 0.00 0.00 39.38 4.85
21 22 0.249114 GCTAACTACGAGGAGGCAGC 60.249 60.000 0.00 0.00 0.00 5.25
22 23 1.103803 CTAACTACGAGGAGGCAGCA 58.896 55.000 0.00 0.00 0.00 4.41
23 24 1.066303 CTAACTACGAGGAGGCAGCAG 59.934 57.143 0.00 0.00 0.00 4.24
24 25 0.612174 AACTACGAGGAGGCAGCAGA 60.612 55.000 0.00 0.00 0.00 4.26
25 26 0.612174 ACTACGAGGAGGCAGCAGAA 60.612 55.000 0.00 0.00 0.00 3.02
26 27 0.749649 CTACGAGGAGGCAGCAGAAT 59.250 55.000 0.00 0.00 0.00 2.40
27 28 1.957177 CTACGAGGAGGCAGCAGAATA 59.043 52.381 0.00 0.00 0.00 1.75
28 29 0.461961 ACGAGGAGGCAGCAGAATAC 59.538 55.000 0.00 0.00 0.00 1.89
29 30 0.461548 CGAGGAGGCAGCAGAATACA 59.538 55.000 0.00 0.00 0.00 2.29
30 31 1.134699 CGAGGAGGCAGCAGAATACAA 60.135 52.381 0.00 0.00 0.00 2.41
31 32 2.677902 CGAGGAGGCAGCAGAATACAAA 60.678 50.000 0.00 0.00 0.00 2.83
32 33 2.680339 GAGGAGGCAGCAGAATACAAAC 59.320 50.000 0.00 0.00 0.00 2.93
33 34 2.307098 AGGAGGCAGCAGAATACAAACT 59.693 45.455 0.00 0.00 0.00 2.66
34 35 3.519510 AGGAGGCAGCAGAATACAAACTA 59.480 43.478 0.00 0.00 0.00 2.24
35 36 4.164988 AGGAGGCAGCAGAATACAAACTAT 59.835 41.667 0.00 0.00 0.00 2.12
36 37 4.513318 GGAGGCAGCAGAATACAAACTATC 59.487 45.833 0.00 0.00 0.00 2.08
37 38 5.363939 GAGGCAGCAGAATACAAACTATCT 58.636 41.667 0.00 0.00 0.00 1.98
38 39 5.749462 AGGCAGCAGAATACAAACTATCTT 58.251 37.500 0.00 0.00 0.00 2.40
39 40 6.183347 AGGCAGCAGAATACAAACTATCTTT 58.817 36.000 0.00 0.00 0.00 2.52
40 41 7.338710 AGGCAGCAGAATACAAACTATCTTTA 58.661 34.615 0.00 0.00 0.00 1.85
41 42 7.829211 AGGCAGCAGAATACAAACTATCTTTAA 59.171 33.333 0.00 0.00 0.00 1.52
42 43 8.458843 GGCAGCAGAATACAAACTATCTTTAAA 58.541 33.333 0.00 0.00 0.00 1.52
43 44 9.840427 GCAGCAGAATACAAACTATCTTTAAAA 57.160 29.630 0.00 0.00 0.00 1.52
58 59 9.818796 CTATCTTTAAAAAGACTTCAGAACAGC 57.181 33.333 7.29 0.00 46.80 4.40
59 60 6.715464 TCTTTAAAAAGACTTCAGAACAGCG 58.285 36.000 1.00 0.00 39.95 5.18
60 61 3.340337 AAAAAGACTTCAGAACAGCGC 57.660 42.857 0.00 0.00 0.00 5.92
61 62 1.230324 AAAGACTTCAGAACAGCGCC 58.770 50.000 2.29 0.00 0.00 6.53
62 63 0.394565 AAGACTTCAGAACAGCGCCT 59.605 50.000 2.29 0.00 0.00 5.52
63 64 0.394565 AGACTTCAGAACAGCGCCTT 59.605 50.000 2.29 0.00 0.00 4.35
64 65 1.202698 AGACTTCAGAACAGCGCCTTT 60.203 47.619 2.29 0.00 0.00 3.11
170 174 1.144913 ACCAATGTACAAGCACCACCT 59.855 47.619 0.00 0.00 0.00 4.00
171 175 1.812571 CCAATGTACAAGCACCACCTC 59.187 52.381 0.00 0.00 0.00 3.85
370 471 2.168458 TGATCTCGATGGGGTGGTAA 57.832 50.000 0.00 0.00 0.00 2.85
381 482 1.612199 GGGGTGGTAATGCTCGAACAA 60.612 52.381 0.00 0.00 0.00 2.83
480 583 2.905415 TGCCCTCAGGACAATTCAAT 57.095 45.000 0.00 0.00 33.47 2.57
615 718 4.927267 ATCACCTACACCAATGGAAGAA 57.073 40.909 6.16 0.00 0.00 2.52
620 723 4.788617 ACCTACACCAATGGAAGAACCTAT 59.211 41.667 6.16 0.00 39.86 2.57
622 725 5.823045 CCTACACCAATGGAAGAACCTATTC 59.177 44.000 6.16 0.00 39.86 1.75
626 729 6.125029 CACCAATGGAAGAACCTATTCAGAT 58.875 40.000 6.16 0.00 37.29 2.90
633 736 6.664816 TGGAAGAACCTATTCAGATTGCAAAT 59.335 34.615 1.71 0.00 37.29 2.32
641 745 7.446625 ACCTATTCAGATTGCAAATCCATAGAC 59.553 37.037 1.71 0.00 0.00 2.59
645 749 6.053650 TCAGATTGCAAATCCATAGACAGAG 58.946 40.000 1.71 0.00 0.00 3.35
651 755 2.180946 ATCCATAGACAGAGGCCACA 57.819 50.000 5.01 0.00 0.00 4.17
652 756 2.180946 TCCATAGACAGAGGCCACAT 57.819 50.000 5.01 0.00 0.00 3.21
665 769 2.202866 CCACATAGGCGGTGAGACT 58.797 57.895 8.27 0.00 43.68 3.24
667 771 0.179100 CACATAGGCGGTGAGACTGG 60.179 60.000 1.52 0.00 39.66 4.00
792 896 1.383803 GGAGGAGGACATGGAGGCT 60.384 63.158 0.00 0.00 0.00 4.58
919 1047 1.162800 GCTCGTCATGGGCCTCATTC 61.163 60.000 4.53 0.01 32.92 2.67
927 1055 0.395586 TGGGCCTCATTCCGAAATGG 60.396 55.000 4.53 0.00 42.19 3.16
940 1069 3.521765 AAATGGTGGGCCGGAGCAA 62.522 57.895 5.05 0.00 42.56 3.91
941 1070 3.944250 AATGGTGGGCCGGAGCAAG 62.944 63.158 5.05 0.00 42.56 4.01
947 1076 2.125106 GGCCGGAGCAAGACGAAT 60.125 61.111 5.05 0.00 42.56 3.34
952 1081 0.528684 CGGAGCAAGACGAATCCCTC 60.529 60.000 0.00 0.00 0.00 4.30
953 1082 0.179070 GGAGCAAGACGAATCCCTCC 60.179 60.000 0.00 0.00 31.71 4.30
954 1083 0.179070 GAGCAAGACGAATCCCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
955 1084 0.618968 AGCAAGACGAATCCCTCCCT 60.619 55.000 0.00 0.00 0.00 4.20
956 1085 0.179070 GCAAGACGAATCCCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
957 1086 1.490574 CAAGACGAATCCCTCCCTCT 58.509 55.000 0.00 0.00 0.00 3.69
958 1087 1.410882 CAAGACGAATCCCTCCCTCTC 59.589 57.143 0.00 0.00 0.00 3.20
959 1088 0.930726 AGACGAATCCCTCCCTCTCT 59.069 55.000 0.00 0.00 0.00 3.10
960 1089 1.133606 AGACGAATCCCTCCCTCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
961 1090 0.930726 ACGAATCCCTCCCTCTCTCT 59.069 55.000 0.00 0.00 0.00 3.10
962 1091 1.289530 ACGAATCCCTCCCTCTCTCTT 59.710 52.381 0.00 0.00 0.00 2.85
963 1092 2.514582 ACGAATCCCTCCCTCTCTCTTA 59.485 50.000 0.00 0.00 0.00 2.10
964 1093 2.888414 CGAATCCCTCCCTCTCTCTTAC 59.112 54.545 0.00 0.00 0.00 2.34
965 1094 3.435890 CGAATCCCTCCCTCTCTCTTACT 60.436 52.174 0.00 0.00 0.00 2.24
966 1095 3.611025 ATCCCTCCCTCTCTCTTACTG 57.389 52.381 0.00 0.00 0.00 2.74
967 1096 2.289467 TCCCTCCCTCTCTCTTACTGT 58.711 52.381 0.00 0.00 0.00 3.55
968 1097 3.471879 TCCCTCCCTCTCTCTTACTGTA 58.528 50.000 0.00 0.00 0.00 2.74
969 1098 3.460340 TCCCTCCCTCTCTCTTACTGTAG 59.540 52.174 0.00 0.00 0.00 2.74
970 1099 3.435890 CCCTCCCTCTCTCTTACTGTAGG 60.436 56.522 0.00 0.00 0.00 3.18
971 1100 3.435890 CCTCCCTCTCTCTTACTGTAGGG 60.436 56.522 3.60 3.60 44.29 3.53
972 1101 2.091775 TCCCTCTCTCTTACTGTAGGGC 60.092 54.545 4.93 0.00 42.91 5.19
986 1115 2.492484 TGTAGGGCGTTTGTGTTTGTTT 59.508 40.909 0.00 0.00 0.00 2.83
1044 1182 4.918201 CTCCTCCGCATTCCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
1083 1221 3.024217 GCCTCCTCCTCCTCCTCT 58.976 66.667 0.00 0.00 0.00 3.69
1090 1231 1.307953 TCCTCCTCCTCTCCCTCGA 60.308 63.158 0.00 0.00 0.00 4.04
1091 1232 0.919780 TCCTCCTCCTCTCCCTCGAA 60.920 60.000 0.00 0.00 0.00 3.71
1099 1240 3.068691 CTCCCTCGAAGCCGACCA 61.069 66.667 0.00 0.00 40.30 4.02
1275 1416 3.358076 CTTCCCGGTGCTCGAGTCC 62.358 68.421 15.13 15.34 42.43 3.85
1410 1551 2.202987 CTGGTCATCAGGCGAGGC 60.203 66.667 0.00 0.00 39.76 4.70
1683 1824 2.281070 CCGCAGCACCTGTTCACT 60.281 61.111 0.00 0.00 33.43 3.41
1685 1826 2.320587 CGCAGCACCTGTTCACTCC 61.321 63.158 0.00 0.00 33.43 3.85
1728 1869 1.413445 CTGGGGAAGATGAGCAGAGAG 59.587 57.143 0.00 0.00 0.00 3.20
1758 1899 4.107072 AGAAGGAATTGATCTCCACTGGA 58.893 43.478 0.00 0.00 35.20 3.86
1788 1929 1.035932 AAGCTGTGCAGGGCATCATC 61.036 55.000 12.44 0.00 41.91 2.92
1813 1954 2.222911 GTGCTTTCTCTGAAGTCACTGC 59.777 50.000 0.00 0.00 34.16 4.40
1825 1966 0.735632 GTCACTGCCTGAGCTCGAAG 60.736 60.000 9.64 1.89 40.80 3.79
1844 1985 4.729918 GGTGCTGGGCTCTGGTGG 62.730 72.222 0.00 0.00 0.00 4.61
1899 2040 2.202878 TTCGCCGAGCAGTATGGC 60.203 61.111 0.00 0.00 45.39 4.40
1902 2043 1.179174 TCGCCGAGCAGTATGGCTAT 61.179 55.000 0.60 0.00 45.99 2.97
1926 2067 2.287644 CGATTGGCTATGTTTCGATGCA 59.712 45.455 0.00 0.00 31.74 3.96
1938 2079 2.368856 CGATGCATCGGTTGTTCGA 58.631 52.632 35.80 0.00 45.93 3.71
1941 2082 0.036388 ATGCATCGGTTGTTCGAGGT 60.036 50.000 0.00 0.00 42.05 3.85
1947 2088 0.878523 CGGTTGTTCGAGGTCTTGCA 60.879 55.000 0.00 0.00 0.00 4.08
1962 2103 2.769663 TCTTGCATACTACACGGGGATT 59.230 45.455 0.00 0.00 0.00 3.01
1965 2106 2.237643 TGCATACTACACGGGGATTGTT 59.762 45.455 0.00 0.00 0.00 2.83
2046 2187 2.041701 AGGCTGCTTTCAACATTTGGT 58.958 42.857 0.00 0.00 0.00 3.67
2049 2190 2.989166 GCTGCTTTCAACATTTGGTAGC 59.011 45.455 0.00 0.00 37.71 3.58
2085 2226 0.472925 GTGGGTTTGGGTTTGGGGAT 60.473 55.000 0.00 0.00 0.00 3.85
2100 2241 1.603172 GGGGATGCTGTTATCGTCGAG 60.603 57.143 0.00 0.00 0.00 4.04
2118 2259 1.748500 GCTGCTGAAGGAGAAGGGC 60.749 63.158 2.65 0.00 35.31 5.19
2142 2283 2.584418 CCTCATCTGTCGCGCCAG 60.584 66.667 11.62 11.62 0.00 4.85
2187 2328 1.767681 GATGATGAGCTTCAGGGACCT 59.232 52.381 0.00 0.00 0.00 3.85
2247 2388 4.469227 AGATCTGTAGACCTTGTGCAAGAT 59.531 41.667 12.99 0.00 40.79 2.40
2268 2409 1.523758 AGCGTCTGAAATGGGTGTTC 58.476 50.000 0.00 0.00 0.00 3.18
2284 2425 2.880890 GTGTTCAAACATGCAGAGAGGT 59.119 45.455 0.00 0.00 41.59 3.85
2292 2433 3.019564 ACATGCAGAGAGGTTAAATGCC 58.980 45.455 0.00 0.00 36.04 4.40
2468 2610 6.746745 TTTCTTCGTTTTTGTTGTCTACCT 57.253 33.333 0.00 0.00 0.00 3.08
2508 2650 3.429881 GCAACATTTTAAGCTGTGCCTTC 59.570 43.478 0.00 0.00 0.00 3.46
2657 2814 2.100252 GGACAACTGATCAATGGCATGG 59.900 50.000 14.23 0.00 0.00 3.66
2673 2830 3.696306 TGGAAACATCACGAGTGCA 57.304 47.368 0.00 0.00 33.40 4.57
2695 2852 9.056005 GTGCATCAAGAATACTACCATGATAAA 57.944 33.333 0.00 0.00 0.00 1.40
2730 2887 8.581578 TGTCAGTTGTGAACAGTTCTGTATATA 58.418 33.333 14.51 0.00 33.27 0.86
2821 2982 6.758806 ACTCCCTCCGTACCAAAATATATT 57.241 37.500 0.00 0.00 0.00 1.28
2822 2983 7.145474 ACTCCCTCCGTACCAAAATATATTT 57.855 36.000 4.81 4.81 0.00 1.40
2823 2984 7.580007 ACTCCCTCCGTACCAAAATATATTTT 58.420 34.615 16.15 16.15 40.37 1.82
2824 2985 8.716779 ACTCCCTCCGTACCAAAATATATTTTA 58.283 33.333 20.32 5.62 37.86 1.52
2825 2986 9.563748 CTCCCTCCGTACCAAAATATATTTTAA 57.436 33.333 20.32 8.78 37.86 1.52
2826 2987 9.341078 TCCCTCCGTACCAAAATATATTTTAAC 57.659 33.333 20.32 16.85 37.86 2.01
2827 2988 8.284693 CCCTCCGTACCAAAATATATTTTAACG 58.715 37.037 26.39 26.39 37.86 3.18
2829 2990 9.853921 CTCCGTACCAAAATATATTTTAACGTC 57.146 33.333 28.32 17.44 37.86 4.34
2830 2991 9.376075 TCCGTACCAAAATATATTTTAACGTCA 57.624 29.630 28.32 20.39 37.86 4.35
2846 3007 8.939201 TTTAACGTCATATATTTTGGTACGGA 57.061 30.769 0.00 0.00 33.44 4.69
2847 3008 8.578308 TTAACGTCATATATTTTGGTACGGAG 57.422 34.615 0.00 0.00 33.44 4.63
2848 3009 5.535333 ACGTCATATATTTTGGTACGGAGG 58.465 41.667 0.00 0.00 33.44 4.30
2849 3010 4.927425 CGTCATATATTTTGGTACGGAGGG 59.073 45.833 0.00 0.00 0.00 4.30
2850 3011 5.279106 CGTCATATATTTTGGTACGGAGGGA 60.279 44.000 0.00 0.00 0.00 4.20
2851 3012 6.164176 GTCATATATTTTGGTACGGAGGGAG 58.836 44.000 0.00 0.00 0.00 4.30
2852 3013 5.842328 TCATATATTTTGGTACGGAGGGAGT 59.158 40.000 0.00 0.00 0.00 3.85
2853 3014 7.011994 TCATATATTTTGGTACGGAGGGAGTA 58.988 38.462 0.00 0.00 0.00 2.59
2854 3015 5.803237 ATATTTTGGTACGGAGGGAGTAG 57.197 43.478 0.00 0.00 0.00 2.57
2855 3016 2.610438 TTTGGTACGGAGGGAGTAGT 57.390 50.000 0.00 0.00 0.00 2.73
2856 3017 3.737559 TTTGGTACGGAGGGAGTAGTA 57.262 47.619 0.00 0.00 0.00 1.82
2857 3018 3.287867 TTGGTACGGAGGGAGTAGTAG 57.712 52.381 0.00 0.00 0.00 2.57
2858 3019 2.200081 TGGTACGGAGGGAGTAGTAGT 58.800 52.381 0.00 0.00 0.00 2.73
2859 3020 3.384168 TGGTACGGAGGGAGTAGTAGTA 58.616 50.000 0.00 0.00 0.00 1.82
2860 3021 3.780294 TGGTACGGAGGGAGTAGTAGTAA 59.220 47.826 0.00 0.00 0.00 2.24
2861 3022 4.141620 TGGTACGGAGGGAGTAGTAGTAAG 60.142 50.000 0.00 0.00 0.00 2.34
2862 3023 4.141597 GGTACGGAGGGAGTAGTAGTAAGT 60.142 50.000 0.00 0.00 0.00 2.24
2863 3024 5.070580 GGTACGGAGGGAGTAGTAGTAAGTA 59.929 48.000 0.00 0.00 0.00 2.24
2864 3025 5.029807 ACGGAGGGAGTAGTAGTAAGTAC 57.970 47.826 0.00 0.00 0.00 2.73
2865 3026 4.719273 ACGGAGGGAGTAGTAGTAAGTACT 59.281 45.833 0.00 0.00 43.25 2.73
2872 3033 5.289083 AGTAGTAGTAAGTACTCCCTCCG 57.711 47.826 0.00 0.00 41.42 4.63
2873 3034 4.719273 AGTAGTAGTAAGTACTCCCTCCGT 59.281 45.833 0.00 0.00 41.42 4.69
2874 3035 4.582973 AGTAGTAAGTACTCCCTCCGTT 57.417 45.455 0.00 0.00 37.41 4.44
2875 3036 4.522114 AGTAGTAAGTACTCCCTCCGTTC 58.478 47.826 0.00 0.00 37.41 3.95
2876 3037 2.732763 AGTAAGTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
2877 3038 2.042162 AGTAAGTACTCCCTCCGTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
2878 3039 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2879 3040 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2880 3041 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2881 3042 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2882 3043 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2883 3044 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2884 3045 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2885 3046 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2886 3047 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2887 3048 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2888 3049 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2889 3050 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2890 3051 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2891 3052 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2892 3053 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2893 3054 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2894 3055 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2895 3056 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2896 3057 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2897 3058 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2898 3059 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2899 3060 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2900 3061 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2901 3062 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2902 3063 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2903 3064 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2904 3065 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2905 3066 3.792401 TCGTCGCAGAAATGGATGTATT 58.208 40.909 0.00 0.00 39.69 1.89
2906 3067 4.188462 TCGTCGCAGAAATGGATGTATTT 58.812 39.130 0.00 0.00 39.69 1.40
2907 3068 5.353111 TCGTCGCAGAAATGGATGTATTTA 58.647 37.500 0.00 0.00 39.69 1.40
2908 3069 5.462068 TCGTCGCAGAAATGGATGTATTTAG 59.538 40.000 0.00 0.00 39.69 1.85
2909 3070 5.462068 CGTCGCAGAAATGGATGTATTTAGA 59.538 40.000 0.00 0.00 39.69 2.10
2910 3071 6.019075 CGTCGCAGAAATGGATGTATTTAGAA 60.019 38.462 0.00 0.00 39.69 2.10
2911 3072 7.126398 GTCGCAGAAATGGATGTATTTAGAAC 58.874 38.462 0.00 0.00 39.69 3.01
2912 3073 7.011482 GTCGCAGAAATGGATGTATTTAGAACT 59.989 37.037 0.00 0.00 39.69 3.01
2913 3074 8.201464 TCGCAGAAATGGATGTATTTAGAACTA 58.799 33.333 0.00 0.00 30.78 2.24
2914 3075 8.826710 CGCAGAAATGGATGTATTTAGAACTAA 58.173 33.333 0.00 0.00 30.78 2.24
2941 3102 6.042638 ACATCTAGGTACATCCATACATGC 57.957 41.667 0.00 0.00 39.02 4.06
2942 3103 4.783764 TCTAGGTACATCCATACATGCG 57.216 45.455 0.00 0.00 39.02 4.73
2943 3104 4.403734 TCTAGGTACATCCATACATGCGA 58.596 43.478 0.00 0.00 39.02 5.10
2944 3105 3.386768 AGGTACATCCATACATGCGAC 57.613 47.619 0.00 0.00 39.02 5.19
2945 3106 2.698274 AGGTACATCCATACATGCGACA 59.302 45.455 0.00 0.00 39.02 4.35
2946 3107 3.133901 AGGTACATCCATACATGCGACAA 59.866 43.478 0.00 0.00 39.02 3.18
2947 3108 3.494626 GGTACATCCATACATGCGACAAG 59.505 47.826 0.00 0.00 35.97 3.16
2948 3109 3.266510 ACATCCATACATGCGACAAGT 57.733 42.857 0.00 0.00 0.00 3.16
2949 3110 4.400529 ACATCCATACATGCGACAAGTA 57.599 40.909 0.00 0.00 0.00 2.24
2950 3111 4.765273 ACATCCATACATGCGACAAGTAA 58.235 39.130 0.00 0.00 0.00 2.24
2951 3112 5.368145 ACATCCATACATGCGACAAGTAAT 58.632 37.500 0.00 0.00 0.00 1.89
2952 3113 5.822519 ACATCCATACATGCGACAAGTAATT 59.177 36.000 0.00 0.00 0.00 1.40
2953 3114 5.984233 TCCATACATGCGACAAGTAATTC 57.016 39.130 0.00 0.00 0.00 2.17
2954 3115 4.506288 TCCATACATGCGACAAGTAATTCG 59.494 41.667 0.00 0.00 38.31 3.34
2955 3116 4.318760 CCATACATGCGACAAGTAATTCGG 60.319 45.833 0.00 0.00 35.73 4.30
2956 3117 2.967362 ACATGCGACAAGTAATTCGGA 58.033 42.857 0.00 0.00 40.02 4.55
2957 3118 3.331150 ACATGCGACAAGTAATTCGGAA 58.669 40.909 0.00 0.00 39.13 4.30
2958 3119 3.124636 ACATGCGACAAGTAATTCGGAAC 59.875 43.478 0.00 0.00 39.13 3.62
2986 3147 7.362234 AGGGGGTAGCAGAATACAAAATAATT 58.638 34.615 0.00 0.00 0.00 1.40
2989 3150 8.352942 GGGGTAGCAGAATACAAAATAATTCAG 58.647 37.037 0.00 0.00 35.07 3.02
3036 3197 2.168521 CCTGACGAACTATGTGGGTCAT 59.831 50.000 0.00 0.00 37.05 3.06
3085 3246 3.247006 ACGTACATTCACCATCACCTC 57.753 47.619 0.00 0.00 0.00 3.85
3238 3400 4.418392 CACATGAATTGGCTTCTGCTAAC 58.582 43.478 0.00 0.00 42.28 2.34
3298 3545 8.839310 ATACAAGACTAATATGCCTGATGAAC 57.161 34.615 0.00 0.00 0.00 3.18
3299 3546 6.893583 ACAAGACTAATATGCCTGATGAACT 58.106 36.000 0.00 0.00 0.00 3.01
3300 3547 8.023021 ACAAGACTAATATGCCTGATGAACTA 57.977 34.615 0.00 0.00 0.00 2.24
3301 3548 8.654997 ACAAGACTAATATGCCTGATGAACTAT 58.345 33.333 0.00 0.00 0.00 2.12
3302 3549 8.933807 CAAGACTAATATGCCTGATGAACTATG 58.066 37.037 0.00 0.00 0.00 2.23
3303 3550 8.200024 AGACTAATATGCCTGATGAACTATGT 57.800 34.615 0.00 0.00 0.00 2.29
3304 3551 8.310382 AGACTAATATGCCTGATGAACTATGTC 58.690 37.037 0.00 0.00 0.00 3.06
3305 3552 7.390027 ACTAATATGCCTGATGAACTATGTCC 58.610 38.462 0.00 0.00 0.00 4.02
3306 3553 2.602257 TGCCTGATGAACTATGTCCG 57.398 50.000 0.00 0.00 0.00 4.79
3307 3554 1.831106 TGCCTGATGAACTATGTCCGT 59.169 47.619 0.00 0.00 0.00 4.69
3308 3555 2.159099 TGCCTGATGAACTATGTCCGTC 60.159 50.000 0.00 0.00 0.00 4.79
3309 3556 2.159099 GCCTGATGAACTATGTCCGTCA 60.159 50.000 0.00 0.00 0.00 4.35
3310 3557 3.448686 CCTGATGAACTATGTCCGTCAC 58.551 50.000 0.00 0.00 0.00 3.67
3311 3558 3.119137 CCTGATGAACTATGTCCGTCACA 60.119 47.826 0.00 0.00 40.18 3.58
3312 3559 4.494484 CTGATGAACTATGTCCGTCACAA 58.506 43.478 0.00 0.00 38.97 3.33
3313 3560 4.494484 TGATGAACTATGTCCGTCACAAG 58.506 43.478 0.00 0.00 38.97 3.16
3314 3561 4.219725 TGATGAACTATGTCCGTCACAAGA 59.780 41.667 0.00 0.00 38.97 3.02
3315 3562 4.594123 TGAACTATGTCCGTCACAAGAA 57.406 40.909 0.00 0.00 38.97 2.52
3316 3563 4.951254 TGAACTATGTCCGTCACAAGAAA 58.049 39.130 0.00 0.00 38.97 2.52
3317 3564 4.988540 TGAACTATGTCCGTCACAAGAAAG 59.011 41.667 0.00 0.00 38.97 2.62
3318 3565 3.326747 ACTATGTCCGTCACAAGAAAGC 58.673 45.455 0.00 0.00 38.97 3.51
3319 3566 2.254546 ATGTCCGTCACAAGAAAGCA 57.745 45.000 0.00 0.00 38.97 3.91
3320 3567 2.031258 TGTCCGTCACAAGAAAGCAA 57.969 45.000 0.00 0.00 29.30 3.91
3321 3568 1.939934 TGTCCGTCACAAGAAAGCAAG 59.060 47.619 0.00 0.00 29.30 4.01
3322 3569 0.944386 TCCGTCACAAGAAAGCAAGC 59.056 50.000 0.00 0.00 0.00 4.01
3323 3570 0.947244 CCGTCACAAGAAAGCAAGCT 59.053 50.000 0.00 0.00 0.00 3.74
3324 3571 1.069636 CCGTCACAAGAAAGCAAGCTC 60.070 52.381 0.00 0.00 0.00 4.09
3325 3572 1.869767 CGTCACAAGAAAGCAAGCTCT 59.130 47.619 0.00 0.00 0.00 4.09
3326 3573 3.059884 CGTCACAAGAAAGCAAGCTCTA 58.940 45.455 0.00 0.00 0.00 2.43
3327 3574 3.494626 CGTCACAAGAAAGCAAGCTCTAA 59.505 43.478 0.00 0.00 0.00 2.10
3328 3575 4.024893 CGTCACAAGAAAGCAAGCTCTAAA 60.025 41.667 0.00 0.00 0.00 1.85
3329 3576 5.447573 GTCACAAGAAAGCAAGCTCTAAAG 58.552 41.667 0.00 0.00 0.00 1.85
3330 3577 5.237344 GTCACAAGAAAGCAAGCTCTAAAGA 59.763 40.000 0.00 0.00 0.00 2.52
3331 3578 5.822519 TCACAAGAAAGCAAGCTCTAAAGAA 59.177 36.000 0.00 0.00 0.00 2.52
3332 3579 6.488006 TCACAAGAAAGCAAGCTCTAAAGAAT 59.512 34.615 0.00 0.00 0.00 2.40
3333 3580 6.581542 CACAAGAAAGCAAGCTCTAAAGAATG 59.418 38.462 0.00 0.00 0.00 2.67
3334 3581 6.488006 ACAAGAAAGCAAGCTCTAAAGAATGA 59.512 34.615 0.00 0.00 0.00 2.57
3342 3589 6.320171 CAAGCTCTAAAGAATGACCAATGTG 58.680 40.000 0.00 0.00 0.00 3.21
3398 3645 6.911250 TCAGATCTAACAACCAGTACTCAA 57.089 37.500 0.00 0.00 0.00 3.02
3399 3646 6.925211 TCAGATCTAACAACCAGTACTCAAG 58.075 40.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.066303 CTGCCTCCTCGTAGTTAGCAG 59.934 57.143 0.00 0.00 40.13 4.24
1 2 1.103803 CTGCCTCCTCGTAGTTAGCA 58.896 55.000 0.00 0.00 0.00 3.49
2 3 0.249114 GCTGCCTCCTCGTAGTTAGC 60.249 60.000 0.00 0.00 0.00 3.09
3 4 1.066303 CTGCTGCCTCCTCGTAGTTAG 59.934 57.143 0.00 0.00 0.00 2.34
4 5 1.103803 CTGCTGCCTCCTCGTAGTTA 58.896 55.000 0.00 0.00 0.00 2.24
5 6 0.612174 TCTGCTGCCTCCTCGTAGTT 60.612 55.000 0.00 0.00 0.00 2.24
6 7 0.612174 TTCTGCTGCCTCCTCGTAGT 60.612 55.000 0.00 0.00 0.00 2.73
7 8 0.749649 ATTCTGCTGCCTCCTCGTAG 59.250 55.000 0.00 0.00 0.00 3.51
8 9 1.681793 GTATTCTGCTGCCTCCTCGTA 59.318 52.381 0.00 0.00 0.00 3.43
9 10 0.461961 GTATTCTGCTGCCTCCTCGT 59.538 55.000 0.00 0.00 0.00 4.18
10 11 0.461548 TGTATTCTGCTGCCTCCTCG 59.538 55.000 0.00 0.00 0.00 4.63
11 12 2.680339 GTTTGTATTCTGCTGCCTCCTC 59.320 50.000 0.00 0.00 0.00 3.71
12 13 2.307098 AGTTTGTATTCTGCTGCCTCCT 59.693 45.455 0.00 0.00 0.00 3.69
13 14 2.716217 AGTTTGTATTCTGCTGCCTCC 58.284 47.619 0.00 0.00 0.00 4.30
14 15 5.363939 AGATAGTTTGTATTCTGCTGCCTC 58.636 41.667 0.00 0.00 0.00 4.70
15 16 5.365021 AGATAGTTTGTATTCTGCTGCCT 57.635 39.130 0.00 0.00 0.00 4.75
16 17 6.442513 AAAGATAGTTTGTATTCTGCTGCC 57.557 37.500 0.00 0.00 0.00 4.85
17 18 9.840427 TTTTAAAGATAGTTTGTATTCTGCTGC 57.160 29.630 0.00 0.00 0.00 5.25
32 33 9.818796 GCTGTTCTGAAGTCTTTTTAAAGATAG 57.181 33.333 8.07 5.66 45.83 2.08
33 34 8.495949 CGCTGTTCTGAAGTCTTTTTAAAGATA 58.504 33.333 8.07 0.00 45.83 1.98
34 35 7.355778 CGCTGTTCTGAAGTCTTTTTAAAGAT 58.644 34.615 8.07 0.00 45.83 2.40
35 36 6.715464 CGCTGTTCTGAAGTCTTTTTAAAGA 58.285 36.000 0.89 0.89 42.41 2.52
36 37 5.396654 GCGCTGTTCTGAAGTCTTTTTAAAG 59.603 40.000 0.00 0.00 37.36 1.85
37 38 5.270853 GCGCTGTTCTGAAGTCTTTTTAAA 58.729 37.500 0.00 0.00 0.00 1.52
38 39 4.261031 GGCGCTGTTCTGAAGTCTTTTTAA 60.261 41.667 7.64 0.00 0.00 1.52
39 40 3.250040 GGCGCTGTTCTGAAGTCTTTTTA 59.750 43.478 7.64 0.00 0.00 1.52
40 41 2.033424 GGCGCTGTTCTGAAGTCTTTTT 59.967 45.455 7.64 0.00 0.00 1.94
41 42 1.604278 GGCGCTGTTCTGAAGTCTTTT 59.396 47.619 7.64 0.00 0.00 2.27
42 43 1.202698 AGGCGCTGTTCTGAAGTCTTT 60.203 47.619 7.64 0.00 0.00 2.52
43 44 0.394565 AGGCGCTGTTCTGAAGTCTT 59.605 50.000 7.64 0.00 0.00 3.01
44 45 0.394565 AAGGCGCTGTTCTGAAGTCT 59.605 50.000 7.64 0.00 0.00 3.24
45 46 1.230324 AAAGGCGCTGTTCTGAAGTC 58.770 50.000 7.64 0.00 0.00 3.01
46 47 2.543777 TAAAGGCGCTGTTCTGAAGT 57.456 45.000 7.64 0.00 0.00 3.01
47 48 3.896648 TTTAAAGGCGCTGTTCTGAAG 57.103 42.857 7.64 0.00 0.00 3.02
48 49 5.242434 TCTATTTAAAGGCGCTGTTCTGAA 58.758 37.500 7.64 0.00 0.00 3.02
49 50 4.827692 TCTATTTAAAGGCGCTGTTCTGA 58.172 39.130 7.64 0.00 0.00 3.27
50 51 5.545658 TTCTATTTAAAGGCGCTGTTCTG 57.454 39.130 7.64 0.00 0.00 3.02
51 52 7.859325 TTATTCTATTTAAAGGCGCTGTTCT 57.141 32.000 7.64 0.00 0.00 3.01
54 55 8.237267 GCATATTATTCTATTTAAAGGCGCTGT 58.763 33.333 7.64 0.00 0.00 4.40
55 56 8.236586 TGCATATTATTCTATTTAAAGGCGCTG 58.763 33.333 7.64 0.00 0.00 5.18
56 57 8.335532 TGCATATTATTCTATTTAAAGGCGCT 57.664 30.769 7.64 0.00 0.00 5.92
57 58 8.964420 TTGCATATTATTCTATTTAAAGGCGC 57.036 30.769 0.00 0.00 0.00 6.53
97 100 6.173339 CCACATGGTTTGTCAGTCTAATAGT 58.827 40.000 0.00 0.00 36.00 2.12
296 397 4.125703 CTCATGGAAGAATGGTGAGTAGC 58.874 47.826 0.00 0.00 33.42 3.58
370 471 1.741770 GGAGGCGTTGTTCGAGCAT 60.742 57.895 1.75 0.00 42.86 3.79
480 583 2.043115 TGGGAGCTTAGGACTTCAGAGA 59.957 50.000 0.00 0.00 0.00 3.10
592 695 5.255397 TCTTCCATTGGTGTAGGTGATTT 57.745 39.130 1.86 0.00 0.00 2.17
615 718 7.446625 GTCTATGGATTTGCAATCTGAATAGGT 59.553 37.037 0.00 0.00 0.00 3.08
620 723 6.417258 TCTGTCTATGGATTTGCAATCTGAA 58.583 36.000 0.00 0.00 0.00 3.02
622 725 5.238868 CCTCTGTCTATGGATTTGCAATCTG 59.761 44.000 0.00 0.00 0.00 2.90
626 729 3.282021 GCCTCTGTCTATGGATTTGCAA 58.718 45.455 0.00 0.00 0.00 4.08
633 736 2.180946 ATGTGGCCTCTGTCTATGGA 57.819 50.000 3.32 0.00 0.00 3.41
651 755 2.786495 CGCCAGTCTCACCGCCTAT 61.786 63.158 0.00 0.00 0.00 2.57
652 756 3.449227 CGCCAGTCTCACCGCCTA 61.449 66.667 0.00 0.00 0.00 3.93
769 873 2.202987 CATGTCCTCCTCCAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
771 875 1.694133 CCTCCATGTCCTCCTCCAGC 61.694 65.000 0.00 0.00 0.00 4.85
819 947 3.751246 CGCCGGAACCCTACGACA 61.751 66.667 5.05 0.00 0.00 4.35
919 1047 4.418328 TCCGGCCCACCATTTCGG 62.418 66.667 0.00 0.00 41.80 4.30
940 1069 0.930726 AGAGAGGGAGGGATTCGTCT 59.069 55.000 0.00 0.00 0.00 4.18
941 1070 1.133606 AGAGAGAGGGAGGGATTCGTC 60.134 57.143 0.00 0.00 0.00 4.20
947 1076 2.289467 ACAGTAAGAGAGAGGGAGGGA 58.711 52.381 0.00 0.00 0.00 4.20
952 1081 2.312390 GCCCTACAGTAAGAGAGAGGG 58.688 57.143 0.12 0.12 45.57 4.30
953 1082 1.950909 CGCCCTACAGTAAGAGAGAGG 59.049 57.143 0.00 0.00 0.00 3.69
954 1083 2.645802 ACGCCCTACAGTAAGAGAGAG 58.354 52.381 0.00 0.00 0.00 3.20
955 1084 2.803030 ACGCCCTACAGTAAGAGAGA 57.197 50.000 0.00 0.00 0.00 3.10
956 1085 3.056749 ACAAACGCCCTACAGTAAGAGAG 60.057 47.826 0.00 0.00 0.00 3.20
957 1086 2.895404 ACAAACGCCCTACAGTAAGAGA 59.105 45.455 0.00 0.00 0.00 3.10
958 1087 2.993899 CACAAACGCCCTACAGTAAGAG 59.006 50.000 0.00 0.00 0.00 2.85
959 1088 2.366266 ACACAAACGCCCTACAGTAAGA 59.634 45.455 0.00 0.00 0.00 2.10
960 1089 2.762745 ACACAAACGCCCTACAGTAAG 58.237 47.619 0.00 0.00 0.00 2.34
961 1090 2.914695 ACACAAACGCCCTACAGTAA 57.085 45.000 0.00 0.00 0.00 2.24
962 1091 2.873472 CAAACACAAACGCCCTACAGTA 59.127 45.455 0.00 0.00 0.00 2.74
963 1092 1.673920 CAAACACAAACGCCCTACAGT 59.326 47.619 0.00 0.00 0.00 3.55
964 1093 1.673920 ACAAACACAAACGCCCTACAG 59.326 47.619 0.00 0.00 0.00 2.74
965 1094 1.752683 ACAAACACAAACGCCCTACA 58.247 45.000 0.00 0.00 0.00 2.74
966 1095 2.855660 AACAAACACAAACGCCCTAC 57.144 45.000 0.00 0.00 0.00 3.18
967 1096 2.099427 GGAAACAAACACAAACGCCCTA 59.901 45.455 0.00 0.00 0.00 3.53
968 1097 1.134936 GGAAACAAACACAAACGCCCT 60.135 47.619 0.00 0.00 0.00 5.19
969 1098 1.282817 GGAAACAAACACAAACGCCC 58.717 50.000 0.00 0.00 0.00 6.13
970 1099 1.134936 AGGGAAACAAACACAAACGCC 60.135 47.619 0.00 0.00 0.00 5.68
971 1100 2.287393 AGGGAAACAAACACAAACGC 57.713 45.000 0.00 0.00 0.00 4.84
972 1101 2.926838 CCAAGGGAAACAAACACAAACG 59.073 45.455 0.00 0.00 0.00 3.60
986 1115 1.195115 CGACATTCTCTCCCAAGGGA 58.805 55.000 7.77 7.77 42.90 4.20
1083 1221 2.602267 TTGGTCGGCTTCGAGGGA 60.602 61.111 0.00 0.00 44.17 4.20
1299 1440 1.075970 CTCCGTGATCTCCTCCCCA 60.076 63.158 0.00 0.00 0.00 4.96
1595 1736 3.595428 ATCCCCACGTCGGAGGACA 62.595 63.158 0.00 0.00 43.61 4.02
1683 1824 1.414550 TCAACAATCACACAGACCGGA 59.585 47.619 9.46 0.00 0.00 5.14
1685 1826 2.209273 TGTCAACAATCACACAGACCG 58.791 47.619 0.00 0.00 0.00 4.79
1728 1869 5.997129 GGAGATCAATTCCTTCTCAATCTCC 59.003 44.000 11.51 11.51 46.12 3.71
1758 1899 0.959372 GCACAGCTTCAGATGGCAGT 60.959 55.000 0.00 0.00 35.42 4.40
1788 1929 3.122613 GTGACTTCAGAGAAAGCACATCG 59.877 47.826 0.00 0.00 35.36 3.84
1813 1954 1.153667 GCACCTCTTCGAGCTCAGG 60.154 63.158 15.40 14.99 0.00 3.86
1825 1966 3.325753 ACCAGAGCCCAGCACCTC 61.326 66.667 0.00 0.00 0.00 3.85
1844 1985 1.598962 TCAGCAACAGCCTCAGCAC 60.599 57.895 0.00 0.00 43.56 4.40
1923 2064 0.669318 GACCTCGAACAACCGATGCA 60.669 55.000 0.00 0.00 37.96 3.96
1926 2067 1.939838 GCAAGACCTCGAACAACCGAT 60.940 52.381 0.00 0.00 37.96 4.18
1938 2079 1.480954 CCCGTGTAGTATGCAAGACCT 59.519 52.381 0.00 0.00 30.96 3.85
1941 2082 1.855295 TCCCCGTGTAGTATGCAAGA 58.145 50.000 0.00 0.00 30.96 3.02
1947 2088 4.081531 TCGAAAACAATCCCCGTGTAGTAT 60.082 41.667 0.00 0.00 0.00 2.12
1962 2103 3.190535 GCCTATCAAAAGCCTCGAAAACA 59.809 43.478 0.00 0.00 0.00 2.83
1965 2106 3.066291 TGCCTATCAAAAGCCTCGAAA 57.934 42.857 0.00 0.00 0.00 3.46
2013 2154 0.247736 GCAGCCTATCATACCTCCCG 59.752 60.000 0.00 0.00 0.00 5.14
2046 2187 2.202878 GCCGGCACATCTTCGCTA 60.203 61.111 24.80 0.00 0.00 4.26
2049 2190 3.197790 CAGGCCGGCACATCTTCG 61.198 66.667 30.85 0.78 0.00 3.79
2085 2226 0.802222 GCAGCTCGACGATAACAGCA 60.802 55.000 0.00 0.00 34.08 4.41
2100 2241 1.748500 GCCCTTCTCCTTCAGCAGC 60.749 63.158 0.00 0.00 0.00 5.25
2118 2259 0.809241 GCGACAGATGAGGCAGAAGG 60.809 60.000 0.00 0.00 0.00 3.46
2142 2283 3.181489 ACGGGAAGACAATGTCGTCTATC 60.181 47.826 24.00 14.83 45.56 2.08
2187 2328 1.450134 GGATGCGACACAGGATGCA 60.450 57.895 0.00 0.00 42.53 3.96
2214 2355 4.125703 GGTCTACAGATCTGCCATTCTTG 58.874 47.826 22.83 3.43 0.00 3.02
2247 2388 2.851263 ACACCCATTTCAGACGCTTA 57.149 45.000 0.00 0.00 0.00 3.09
2268 2409 4.860907 GCATTTAACCTCTCTGCATGTTTG 59.139 41.667 0.00 0.00 33.13 2.93
2292 2433 1.364901 CACCAAAACCAGCCTGCTG 59.635 57.895 12.17 12.17 43.26 4.41
2468 2610 2.334977 TGCAAAGGGAGGACTAACAGA 58.665 47.619 0.00 0.00 0.00 3.41
2570 2722 2.053627 CACAATTTCTTGGAGTTGCGC 58.946 47.619 0.00 0.00 36.64 6.09
2617 2774 7.332678 AGTTGTCCGGTATACAATTCAACTTAC 59.667 37.037 19.87 0.00 40.41 2.34
2635 2792 1.452110 TGCCATTGATCAGTTGTCCG 58.548 50.000 0.00 0.00 0.00 4.79
2657 2814 3.433274 TCTTGATGCACTCGTGATGTTTC 59.567 43.478 0.39 0.00 0.00 2.78
2703 2860 4.323417 ACAGAACTGTTCACAACTGACAA 58.677 39.130 21.50 0.00 41.83 3.18
2821 2982 8.939201 TCCGTACCAAAATATATGACGTTAAA 57.061 30.769 0.00 0.00 0.00 1.52
2822 2983 7.652909 CCTCCGTACCAAAATATATGACGTTAA 59.347 37.037 0.00 0.00 0.00 2.01
2823 2984 7.147312 CCTCCGTACCAAAATATATGACGTTA 58.853 38.462 0.00 0.00 0.00 3.18
2824 2985 5.987347 CCTCCGTACCAAAATATATGACGTT 59.013 40.000 0.00 0.00 0.00 3.99
2825 2986 5.510179 CCCTCCGTACCAAAATATATGACGT 60.510 44.000 0.00 0.00 0.00 4.34
2826 2987 4.927425 CCCTCCGTACCAAAATATATGACG 59.073 45.833 0.00 0.00 0.00 4.35
2827 2988 6.105397 TCCCTCCGTACCAAAATATATGAC 57.895 41.667 0.00 0.00 0.00 3.06
2829 2990 6.110411 ACTCCCTCCGTACCAAAATATATG 57.890 41.667 0.00 0.00 0.00 1.78
2830 2991 7.015064 ACTACTCCCTCCGTACCAAAATATAT 58.985 38.462 0.00 0.00 0.00 0.86
2833 2994 4.613437 ACTACTCCCTCCGTACCAAAATA 58.387 43.478 0.00 0.00 0.00 1.40
2834 2995 3.447950 ACTACTCCCTCCGTACCAAAAT 58.552 45.455 0.00 0.00 0.00 1.82
2835 2996 2.893424 ACTACTCCCTCCGTACCAAAA 58.107 47.619 0.00 0.00 0.00 2.44
2836 2997 2.610438 ACTACTCCCTCCGTACCAAA 57.390 50.000 0.00 0.00 0.00 3.28
2837 2998 2.578021 ACTACTACTCCCTCCGTACCAA 59.422 50.000 0.00 0.00 0.00 3.67
2838 2999 2.200081 ACTACTACTCCCTCCGTACCA 58.800 52.381 0.00 0.00 0.00 3.25
2839 3000 4.141597 ACTTACTACTACTCCCTCCGTACC 60.142 50.000 0.00 0.00 0.00 3.34
2840 3001 5.029807 ACTTACTACTACTCCCTCCGTAC 57.970 47.826 0.00 0.00 0.00 3.67
2841 3002 5.900123 AGTACTTACTACTACTCCCTCCGTA 59.100 44.000 0.00 0.00 33.53 4.02
2842 3003 4.719273 AGTACTTACTACTACTCCCTCCGT 59.281 45.833 0.00 0.00 33.53 4.69
2843 3004 5.289083 AGTACTTACTACTACTCCCTCCG 57.711 47.826 0.00 0.00 33.53 4.63
2849 3010 5.163353 ACGGAGGGAGTACTTACTACTACTC 60.163 48.000 0.00 0.00 36.59 2.59
2850 3011 4.719273 ACGGAGGGAGTACTTACTACTACT 59.281 45.833 0.00 0.00 36.59 2.57
2851 3012 5.029807 ACGGAGGGAGTACTTACTACTAC 57.970 47.826 0.00 0.00 37.32 2.73
2852 3013 5.396884 GGAACGGAGGGAGTACTTACTACTA 60.397 48.000 0.00 0.00 37.32 1.82
2853 3014 4.522114 GAACGGAGGGAGTACTTACTACT 58.478 47.826 0.00 0.00 37.32 2.57
2854 3015 3.629855 GGAACGGAGGGAGTACTTACTAC 59.370 52.174 0.00 0.00 36.50 2.73
2855 3016 3.266772 TGGAACGGAGGGAGTACTTACTA 59.733 47.826 0.00 0.00 36.50 1.82
2856 3017 2.042162 TGGAACGGAGGGAGTACTTACT 59.958 50.000 0.00 0.00 39.71 2.24
2857 3018 2.450476 TGGAACGGAGGGAGTACTTAC 58.550 52.381 0.00 0.00 0.00 2.34
2858 3019 2.905415 TGGAACGGAGGGAGTACTTA 57.095 50.000 0.00 0.00 0.00 2.24
2859 3020 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
2860 3021 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
2861 3022 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
2862 3023 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2863 3024 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2864 3025 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2865 3026 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2866 3027 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2867 3028 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2868 3029 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2869 3030 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2870 3031 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2871 3032 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2872 3033 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2873 3034 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2874 3035 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2875 3036 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2876 3037 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2877 3038 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2878 3039 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2879 3040 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2880 3041 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2881 3042 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2882 3043 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2883 3044 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2884 3045 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2885 3046 4.536364 AAATACATCCATTTCTGCGACG 57.464 40.909 0.00 0.00 0.00 5.12
2886 3047 6.844696 TCTAAATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 30.84 5.19
2887 3048 7.047891 AGTTCTAAATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 30.84 5.10
2888 3049 7.251704 AGTTCTAAATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 30.84 5.18
2915 3076 8.260818 GCATGTATGGATGTACCTAGATGTATT 58.739 37.037 0.00 0.00 39.86 1.89
2916 3077 7.416777 CGCATGTATGGATGTACCTAGATGTAT 60.417 40.741 0.00 0.00 39.86 2.29
2917 3078 6.127730 CGCATGTATGGATGTACCTAGATGTA 60.128 42.308 0.00 0.00 39.86 2.29
2918 3079 5.336770 CGCATGTATGGATGTACCTAGATGT 60.337 44.000 0.00 0.00 39.86 3.06
2919 3080 5.105063 CGCATGTATGGATGTACCTAGATG 58.895 45.833 0.00 0.00 39.86 2.90
2920 3081 5.016831 TCGCATGTATGGATGTACCTAGAT 58.983 41.667 0.00 0.00 39.86 1.98
2921 3082 4.217767 GTCGCATGTATGGATGTACCTAGA 59.782 45.833 0.00 0.00 39.86 2.43
2922 3083 4.022329 TGTCGCATGTATGGATGTACCTAG 60.022 45.833 0.00 0.00 39.86 3.02
2923 3084 3.892588 TGTCGCATGTATGGATGTACCTA 59.107 43.478 0.00 0.00 39.86 3.08
2924 3085 2.698274 TGTCGCATGTATGGATGTACCT 59.302 45.455 0.00 0.00 39.86 3.08
2925 3086 3.106242 TGTCGCATGTATGGATGTACC 57.894 47.619 0.00 0.00 39.54 3.34
2926 3087 4.119862 ACTTGTCGCATGTATGGATGTAC 58.880 43.478 0.00 0.00 0.00 2.90
2927 3088 4.400529 ACTTGTCGCATGTATGGATGTA 57.599 40.909 0.00 0.00 0.00 2.29
2928 3089 3.266510 ACTTGTCGCATGTATGGATGT 57.733 42.857 0.00 0.00 0.00 3.06
2929 3090 5.929697 ATTACTTGTCGCATGTATGGATG 57.070 39.130 0.00 0.00 0.00 3.51
2930 3091 5.177511 CGAATTACTTGTCGCATGTATGGAT 59.822 40.000 0.00 0.00 0.00 3.41
2931 3092 4.506288 CGAATTACTTGTCGCATGTATGGA 59.494 41.667 0.00 0.00 0.00 3.41
2932 3093 4.318760 CCGAATTACTTGTCGCATGTATGG 60.319 45.833 0.00 4.42 35.93 2.74
2933 3094 4.506288 TCCGAATTACTTGTCGCATGTATG 59.494 41.667 0.00 0.00 35.93 2.39
2934 3095 4.689071 TCCGAATTACTTGTCGCATGTAT 58.311 39.130 0.00 0.00 35.93 2.29
2935 3096 4.112716 TCCGAATTACTTGTCGCATGTA 57.887 40.909 0.00 2.87 35.93 2.29
2936 3097 2.967362 TCCGAATTACTTGTCGCATGT 58.033 42.857 0.00 4.39 35.93 3.21
2937 3098 3.670203 GTTCCGAATTACTTGTCGCATG 58.330 45.455 0.00 0.00 35.93 4.06
2938 3099 2.347452 CGTTCCGAATTACTTGTCGCAT 59.653 45.455 0.00 0.00 35.93 4.73
2939 3100 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2940 3101 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2941 3102 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2942 3103 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2943 3104 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2944 3105 2.277084 CCCTCCGTTCCGAATTACTTG 58.723 52.381 0.00 0.00 0.00 3.16
2945 3106 1.208776 CCCCTCCGTTCCGAATTACTT 59.791 52.381 0.00 0.00 0.00 2.24
2946 3107 0.828677 CCCCTCCGTTCCGAATTACT 59.171 55.000 0.00 0.00 0.00 2.24
2947 3108 0.179065 CCCCCTCCGTTCCGAATTAC 60.179 60.000 0.00 0.00 0.00 1.89
2948 3109 0.618393 ACCCCCTCCGTTCCGAATTA 60.618 55.000 0.00 0.00 0.00 1.40
2949 3110 0.618393 TACCCCCTCCGTTCCGAATT 60.618 55.000 0.00 0.00 0.00 2.17
2950 3111 1.002017 TACCCCCTCCGTTCCGAAT 59.998 57.895 0.00 0.00 0.00 3.34
2951 3112 1.683365 CTACCCCCTCCGTTCCGAA 60.683 63.158 0.00 0.00 0.00 4.30
2952 3113 2.043652 CTACCCCCTCCGTTCCGA 60.044 66.667 0.00 0.00 0.00 4.55
2953 3114 3.846430 GCTACCCCCTCCGTTCCG 61.846 72.222 0.00 0.00 0.00 4.30
2954 3115 2.686106 TGCTACCCCCTCCGTTCC 60.686 66.667 0.00 0.00 0.00 3.62
2955 3116 1.262640 TTCTGCTACCCCCTCCGTTC 61.263 60.000 0.00 0.00 0.00 3.95
2956 3117 0.620700 ATTCTGCTACCCCCTCCGTT 60.621 55.000 0.00 0.00 0.00 4.44
2957 3118 0.263765 TATTCTGCTACCCCCTCCGT 59.736 55.000 0.00 0.00 0.00 4.69
2958 3119 0.680061 GTATTCTGCTACCCCCTCCG 59.320 60.000 0.00 0.00 0.00 4.63
2959 3120 1.802553 TGTATTCTGCTACCCCCTCC 58.197 55.000 0.00 0.00 0.00 4.30
2960 3121 3.926058 TTTGTATTCTGCTACCCCCTC 57.074 47.619 0.00 0.00 0.00 4.30
2961 3122 4.881157 ATTTTGTATTCTGCTACCCCCT 57.119 40.909 0.00 0.00 0.00 4.79
2962 3123 7.286775 TGAATTATTTTGTATTCTGCTACCCCC 59.713 37.037 0.00 0.00 33.08 5.40
2963 3124 8.232913 TGAATTATTTTGTATTCTGCTACCCC 57.767 34.615 0.00 0.00 33.08 4.95
2964 3125 9.120538 TCTGAATTATTTTGTATTCTGCTACCC 57.879 33.333 0.00 0.00 33.08 3.69
3036 3197 5.126707 CGTCCTTTAGAGCCTACCTTTCTTA 59.873 44.000 0.00 0.00 0.00 2.10
3085 3246 9.787532 TTGATTAGTTCTGAAGTTTCTTTTGTG 57.212 29.630 2.62 0.00 0.00 3.33
3194 3356 8.893219 TGTGCCATCAATTTTACAAACAATTA 57.107 26.923 0.00 0.00 0.00 1.40
3288 3535 2.159099 TGACGGACATAGTTCATCAGGC 60.159 50.000 0.00 0.00 0.00 4.85
3296 3543 3.746492 GCTTTCTTGTGACGGACATAGTT 59.254 43.478 0.00 0.00 33.40 2.24
3297 3544 3.244078 TGCTTTCTTGTGACGGACATAGT 60.244 43.478 0.00 0.00 33.40 2.12
3298 3545 3.325870 TGCTTTCTTGTGACGGACATAG 58.674 45.455 0.00 0.00 33.40 2.23
3299 3546 3.394674 TGCTTTCTTGTGACGGACATA 57.605 42.857 0.00 0.00 33.40 2.29
3300 3547 2.254546 TGCTTTCTTGTGACGGACAT 57.745 45.000 0.00 0.00 33.40 3.06
3301 3548 1.939934 CTTGCTTTCTTGTGACGGACA 59.060 47.619 0.00 0.00 0.00 4.02
3302 3549 1.334149 GCTTGCTTTCTTGTGACGGAC 60.334 52.381 0.00 0.00 0.00 4.79
3303 3550 0.944386 GCTTGCTTTCTTGTGACGGA 59.056 50.000 0.00 0.00 0.00 4.69
3304 3551 0.947244 AGCTTGCTTTCTTGTGACGG 59.053 50.000 0.00 0.00 0.00 4.79
3305 3552 1.869767 AGAGCTTGCTTTCTTGTGACG 59.130 47.619 0.00 0.00 0.00 4.35
3306 3553 5.237344 TCTTTAGAGCTTGCTTTCTTGTGAC 59.763 40.000 0.00 0.00 0.00 3.67
3307 3554 5.368145 TCTTTAGAGCTTGCTTTCTTGTGA 58.632 37.500 0.00 0.00 0.00 3.58
3308 3555 5.679734 TCTTTAGAGCTTGCTTTCTTGTG 57.320 39.130 0.00 0.00 0.00 3.33
3309 3556 6.488006 TCATTCTTTAGAGCTTGCTTTCTTGT 59.512 34.615 0.00 0.00 0.00 3.16
3310 3557 6.800892 GTCATTCTTTAGAGCTTGCTTTCTTG 59.199 38.462 0.00 0.00 0.00 3.02
3311 3558 6.072230 GGTCATTCTTTAGAGCTTGCTTTCTT 60.072 38.462 0.00 0.00 0.00 2.52
3312 3559 5.414144 GGTCATTCTTTAGAGCTTGCTTTCT 59.586 40.000 0.00 0.00 0.00 2.52
3313 3560 5.182001 TGGTCATTCTTTAGAGCTTGCTTTC 59.818 40.000 0.00 0.00 33.63 2.62
3314 3561 5.072741 TGGTCATTCTTTAGAGCTTGCTTT 58.927 37.500 0.00 0.00 33.63 3.51
3315 3562 4.655963 TGGTCATTCTTTAGAGCTTGCTT 58.344 39.130 0.00 0.00 33.63 3.91
3316 3563 4.292186 TGGTCATTCTTTAGAGCTTGCT 57.708 40.909 0.00 0.00 33.63 3.91
3317 3564 5.105997 ACATTGGTCATTCTTTAGAGCTTGC 60.106 40.000 0.00 0.00 33.63 4.01
3318 3565 6.320171 CACATTGGTCATTCTTTAGAGCTTG 58.680 40.000 0.00 0.00 33.63 4.01
3319 3566 5.105997 GCACATTGGTCATTCTTTAGAGCTT 60.106 40.000 0.00 0.00 33.63 3.74
3320 3567 4.397417 GCACATTGGTCATTCTTTAGAGCT 59.603 41.667 0.00 0.00 33.63 4.09
3321 3568 4.156556 TGCACATTGGTCATTCTTTAGAGC 59.843 41.667 0.00 0.00 0.00 4.09
3322 3569 5.885230 TGCACATTGGTCATTCTTTAGAG 57.115 39.130 0.00 0.00 0.00 2.43
3323 3570 5.335897 GCTTGCACATTGGTCATTCTTTAGA 60.336 40.000 0.00 0.00 0.00 2.10
3324 3571 4.860907 GCTTGCACATTGGTCATTCTTTAG 59.139 41.667 0.00 0.00 0.00 1.85
3325 3572 4.280425 TGCTTGCACATTGGTCATTCTTTA 59.720 37.500 0.00 0.00 0.00 1.85
3326 3573 3.069872 TGCTTGCACATTGGTCATTCTTT 59.930 39.130 0.00 0.00 0.00 2.52
3327 3574 2.629137 TGCTTGCACATTGGTCATTCTT 59.371 40.909 0.00 0.00 0.00 2.52
3328 3575 2.029649 GTGCTTGCACATTGGTCATTCT 60.030 45.455 19.36 0.00 0.00 2.40
3329 3576 2.331194 GTGCTTGCACATTGGTCATTC 58.669 47.619 19.36 0.00 0.00 2.67
3330 3577 1.001181 GGTGCTTGCACATTGGTCATT 59.999 47.619 24.34 0.00 0.00 2.57
3331 3578 0.604578 GGTGCTTGCACATTGGTCAT 59.395 50.000 24.34 0.00 0.00 3.06
3332 3579 0.754587 TGGTGCTTGCACATTGGTCA 60.755 50.000 24.34 11.09 0.00 4.02
3333 3580 0.604578 ATGGTGCTTGCACATTGGTC 59.395 50.000 24.34 8.83 0.00 4.02
3334 3581 0.604578 GATGGTGCTTGCACATTGGT 59.395 50.000 24.34 7.48 0.00 3.67
3342 3589 0.242017 GTTCCAGTGATGGTGCTTGC 59.758 55.000 0.00 0.00 0.00 4.01
3377 3624 6.919775 ACTTGAGTACTGGTTGTTAGATCT 57.080 37.500 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.