Multiple sequence alignment - TraesCS5A01G371700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G371700 chr5A 100.000 2899 0 0 1 2899 570487988 570490886 0.000000e+00 5354.0
1 TraesCS5A01G371700 chr5A 96.911 2460 62 4 1 2447 564352786 564350328 0.000000e+00 4109.0
2 TraesCS5A01G371700 chr5A 88.976 127 12 2 2773 2899 561114373 561114249 3.870000e-34 156.0
3 TraesCS5A01G371700 chr2A 97.839 2453 50 3 1 2451 57825596 57828047 0.000000e+00 4233.0
4 TraesCS5A01G371700 chr2A 85.139 323 28 12 2138 2445 763971135 763970818 2.170000e-81 313.0
5 TraesCS5A01G371700 chr2A 86.047 129 16 2 2773 2899 27507647 27507775 1.400000e-28 137.0
6 TraesCS5A01G371700 chr2A 86.400 125 15 2 2775 2897 58716168 58716292 5.040000e-28 135.0
7 TraesCS5A01G371700 chr2D 93.836 2044 95 10 1 2028 330865318 330863290 0.000000e+00 3048.0
8 TraesCS5A01G371700 chr2D 89.024 1403 110 26 746 2124 469107518 469106136 0.000000e+00 1698.0
9 TraesCS5A01G371700 chr2D 88.854 1292 86 28 746 2026 631749157 631747913 0.000000e+00 1535.0
10 TraesCS5A01G371700 chr2D 92.607 1001 63 9 1 994 469108345 469107349 0.000000e+00 1428.0
11 TraesCS5A01G371700 chr2D 91.156 441 38 1 2012 2451 330863357 330862917 5.350000e-167 597.0
12 TraesCS5A01G371700 chr2D 87.311 331 28 8 2121 2450 362106698 362106381 1.640000e-97 366.0
13 TraesCS5A01G371700 chrUn 91.767 2150 134 24 1 2124 96552666 96554798 0.000000e+00 2950.0
14 TraesCS5A01G371700 chr7A 92.910 1213 71 6 825 2026 48781641 48782849 0.000000e+00 1749.0
15 TraesCS5A01G371700 chr7A 89.623 106 9 2 2775 2878 198228671 198228776 1.810000e-27 134.0
16 TraesCS5A01G371700 chr7A 85.827 127 14 4 2775 2899 689696521 689696645 6.520000e-27 132.0
17 TraesCS5A01G371700 chr7A 84.375 128 17 3 2773 2897 11820719 11820592 3.920000e-24 122.0
18 TraesCS5A01G371700 chr7A 88.776 98 8 3 2803 2897 11786643 11786546 1.830000e-22 117.0
19 TraesCS5A01G371700 chr2B 92.828 1213 72 8 825 2026 677292341 677293549 0.000000e+00 1744.0
20 TraesCS5A01G371700 chr4D 90.958 1305 80 25 737 2026 459191750 459193031 0.000000e+00 1722.0
21 TraesCS5A01G371700 chr4D 92.492 999 66 9 1 994 459190934 459191928 0.000000e+00 1421.0
22 TraesCS5A01G371700 chr1B 90.586 1296 92 16 746 2026 127025955 127024675 0.000000e+00 1690.0
23 TraesCS5A01G371700 chr1B 91.326 1003 77 10 1 999 127026777 127025781 0.000000e+00 1362.0
24 TraesCS5A01G371700 chr3B 90.031 1304 94 21 737 2026 8505272 8506553 0.000000e+00 1655.0
25 TraesCS5A01G371700 chr3B 89.769 1300 93 18 746 2027 597427202 597428479 0.000000e+00 1628.0
26 TraesCS5A01G371700 chr3B 87.834 337 27 6 2121 2444 564172724 564173059 1.630000e-102 383.0
27 TraesCS5A01G371700 chr3B 97.222 36 1 0 2080 2115 564172711 564172746 8.670000e-06 62.1
28 TraesCS5A01G371700 chr3D 93.782 981 53 4 1053 2026 6991411 6992390 0.000000e+00 1467.0
29 TraesCS5A01G371700 chr3D 86.012 336 30 7 2125 2445 5545055 5545388 7.690000e-91 344.0
30 TraesCS5A01G371700 chr1A 93.198 985 57 10 1 979 35564412 35563432 0.000000e+00 1439.0
31 TraesCS5A01G371700 chr1A 92.200 1000 68 9 1 994 461967197 461966202 0.000000e+00 1406.0
32 TraesCS5A01G371700 chr1A 82.789 459 39 17 2012 2452 461965164 461964728 9.810000e-100 374.0
33 TraesCS5A01G371700 chr1A 86.154 130 15 3 2773 2899 552156812 552156941 1.400000e-28 137.0
34 TraesCS5A01G371700 chr7B 91.525 1003 76 9 1 999 551485127 551484130 0.000000e+00 1373.0
35 TraesCS5A01G371700 chr6B 84.746 826 90 18 1253 2064 707395218 707394415 0.000000e+00 795.0
36 TraesCS5A01G371700 chr5B 91.921 458 22 8 2003 2447 92572069 92572524 6.820000e-176 627.0
37 TraesCS5A01G371700 chr7D 85.926 405 42 10 1726 2115 69948231 69948635 4.470000e-113 418.0
38 TraesCS5A01G371700 chr7D 88.235 255 16 8 2203 2445 69948679 69948931 2.830000e-75 292.0
39 TraesCS5A01G371700 chr6A 86.207 116 13 3 2765 2878 20175127 20175013 3.920000e-24 122.0
40 TraesCS5A01G371700 chr5D 79.558 181 14 9 2515 2676 451630863 451631039 1.100000e-19 108.0
41 TraesCS5A01G371700 chr6D 83.529 85 8 5 1988 2070 175758110 175758030 1.110000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G371700 chr5A 570487988 570490886 2898 False 5354.0 5354 100.0000 1 2899 1 chr5A.!!$F1 2898
1 TraesCS5A01G371700 chr5A 564350328 564352786 2458 True 4109.0 4109 96.9110 1 2447 1 chr5A.!!$R2 2446
2 TraesCS5A01G371700 chr2A 57825596 57828047 2451 False 4233.0 4233 97.8390 1 2451 1 chr2A.!!$F2 2450
3 TraesCS5A01G371700 chr2D 330862917 330865318 2401 True 1822.5 3048 92.4960 1 2451 2 chr2D.!!$R3 2450
4 TraesCS5A01G371700 chr2D 469106136 469108345 2209 True 1563.0 1698 90.8155 1 2124 2 chr2D.!!$R4 2123
5 TraesCS5A01G371700 chr2D 631747913 631749157 1244 True 1535.0 1535 88.8540 746 2026 1 chr2D.!!$R2 1280
6 TraesCS5A01G371700 chrUn 96552666 96554798 2132 False 2950.0 2950 91.7670 1 2124 1 chrUn.!!$F1 2123
7 TraesCS5A01G371700 chr7A 48781641 48782849 1208 False 1749.0 1749 92.9100 825 2026 1 chr7A.!!$F1 1201
8 TraesCS5A01G371700 chr2B 677292341 677293549 1208 False 1744.0 1744 92.8280 825 2026 1 chr2B.!!$F1 1201
9 TraesCS5A01G371700 chr4D 459190934 459193031 2097 False 1571.5 1722 91.7250 1 2026 2 chr4D.!!$F1 2025
10 TraesCS5A01G371700 chr1B 127024675 127026777 2102 True 1526.0 1690 90.9560 1 2026 2 chr1B.!!$R1 2025
11 TraesCS5A01G371700 chr3B 8505272 8506553 1281 False 1655.0 1655 90.0310 737 2026 1 chr3B.!!$F1 1289
12 TraesCS5A01G371700 chr3B 597427202 597428479 1277 False 1628.0 1628 89.7690 746 2027 1 chr3B.!!$F2 1281
13 TraesCS5A01G371700 chr3D 6991411 6992390 979 False 1467.0 1467 93.7820 1053 2026 1 chr3D.!!$F2 973
14 TraesCS5A01G371700 chr1A 35563432 35564412 980 True 1439.0 1439 93.1980 1 979 1 chr1A.!!$R1 978
15 TraesCS5A01G371700 chr1A 461964728 461967197 2469 True 890.0 1406 87.4945 1 2452 2 chr1A.!!$R2 2451
16 TraesCS5A01G371700 chr7B 551484130 551485127 997 True 1373.0 1373 91.5250 1 999 1 chr7B.!!$R1 998
17 TraesCS5A01G371700 chr6B 707394415 707395218 803 True 795.0 795 84.7460 1253 2064 1 chr6B.!!$R1 811
18 TraesCS5A01G371700 chr7D 69948231 69948931 700 False 355.0 418 87.0805 1726 2445 2 chr7D.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 592 0.178947 TGGACCACCCAACCAATTCC 60.179 55.0 0.0 0.0 43.29 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2454 2739 0.106708 TGTTATGGCATCTCCGAGGC 59.893 55.0 1.65 0.0 38.72 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.423539 TGGCAGCAGTAGATTTTGACT 57.576 42.857 0.00 0.00 0.00 3.41
402 406 1.683917 GCACTCATCTCTACGGGTGAT 59.316 52.381 0.00 0.00 0.00 3.06
475 479 4.751767 TGCCAAACCATTCTTCACTTTT 57.248 36.364 0.00 0.00 0.00 2.27
588 592 0.178947 TGGACCACCCAACCAATTCC 60.179 55.000 0.00 0.00 43.29 3.01
705 709 3.429822 GCCAATTTATGAGTGCAGTGCAT 60.430 43.478 22.87 10.41 41.91 3.96
757 840 2.458620 TGCATTCATTTGATGGCTGGA 58.541 42.857 0.00 0.00 0.00 3.86
1082 1238 2.154462 GACCACTTCCATGACCAACAG 58.846 52.381 0.00 0.00 0.00 3.16
1155 1312 3.054802 GTGGATTCAGGGAGACACATCTT 60.055 47.826 0.00 0.00 34.34 2.40
1176 1333 6.800543 TCTTAAACAATGTGCTGCTGTTTTA 58.199 32.000 18.65 11.48 41.97 1.52
1249 1406 4.104738 TCAAGAAGTGGAGGAAGATTTGGT 59.895 41.667 0.00 0.00 0.00 3.67
1324 1481 2.158971 TGCACAATTAGGCTCAGCGATA 60.159 45.455 0.00 0.00 0.00 2.92
1849 2025 2.816087 CTCATCTTGTTGACAACCCCAG 59.184 50.000 15.59 8.98 0.00 4.45
1878 2057 1.549203 GGCCTTCATGAAGCTTTCCA 58.451 50.000 27.01 0.00 37.11 3.53
1892 2071 4.450976 AGCTTTCCAAAACCAACAAATCC 58.549 39.130 0.00 0.00 0.00 3.01
1897 2076 5.593679 TCCAAAACCAACAAATCCGTTTA 57.406 34.783 0.00 0.00 0.00 2.01
1923 2102 5.800941 GTGAGTAGGTATGTGAAGAAGAACG 59.199 44.000 0.00 0.00 0.00 3.95
2028 2271 5.669164 TGTGAACATGTATGGCTGTAGTA 57.331 39.130 0.00 0.00 0.00 1.82
2055 2299 2.871633 GGTTGCTTTTGGATGTTTGGTG 59.128 45.455 0.00 0.00 0.00 4.17
2059 2303 2.865551 GCTTTTGGATGTTTGGTGTGTG 59.134 45.455 0.00 0.00 0.00 3.82
2070 2314 4.884164 TGTTTGGTGTGTGAACATGTATGA 59.116 37.500 0.00 0.00 0.00 2.15
2163 2436 3.081061 ACGTGCTGATTGCTTTTGGATA 58.919 40.909 0.00 0.00 43.37 2.59
2393 2678 1.117142 AAACCGACCCGTTCCTCTGA 61.117 55.000 0.00 0.00 0.00 3.27
2451 2736 3.876309 ACCAAACACACCCTTACTGAT 57.124 42.857 0.00 0.00 0.00 2.90
2452 2737 3.751518 ACCAAACACACCCTTACTGATC 58.248 45.455 0.00 0.00 0.00 2.92
2453 2738 3.081804 CCAAACACACCCTTACTGATCC 58.918 50.000 0.00 0.00 0.00 3.36
2454 2739 2.742053 CAAACACACCCTTACTGATCCG 59.258 50.000 0.00 0.00 0.00 4.18
2455 2740 0.249398 ACACACCCTTACTGATCCGC 59.751 55.000 0.00 0.00 0.00 5.54
2456 2741 0.462047 CACACCCTTACTGATCCGCC 60.462 60.000 0.00 0.00 0.00 6.13
2457 2742 0.617820 ACACCCTTACTGATCCGCCT 60.618 55.000 0.00 0.00 0.00 5.52
2458 2743 0.105039 CACCCTTACTGATCCGCCTC 59.895 60.000 0.00 0.00 0.00 4.70
2459 2744 1.364171 CCCTTACTGATCCGCCTCG 59.636 63.158 0.00 0.00 0.00 4.63
2470 2755 3.051210 CGCCTCGGAGATGCCATA 58.949 61.111 6.58 0.00 45.31 2.74
2471 2756 1.367471 CGCCTCGGAGATGCCATAA 59.633 57.895 6.58 0.00 45.31 1.90
2472 2757 0.946221 CGCCTCGGAGATGCCATAAC 60.946 60.000 6.58 0.00 45.31 1.89
2473 2758 0.106708 GCCTCGGAGATGCCATAACA 59.893 55.000 6.58 0.00 42.33 2.41
2474 2759 1.475034 GCCTCGGAGATGCCATAACAA 60.475 52.381 6.58 0.00 42.33 2.83
2475 2760 2.213499 CCTCGGAGATGCCATAACAAC 58.787 52.381 6.58 0.00 35.94 3.32
2476 2761 1.860950 CTCGGAGATGCCATAACAACG 59.139 52.381 0.00 0.00 35.94 4.10
2477 2762 1.206132 TCGGAGATGCCATAACAACGT 59.794 47.619 0.00 0.00 35.94 3.99
2478 2763 1.593006 CGGAGATGCCATAACAACGTC 59.407 52.381 0.00 0.00 35.94 4.34
2479 2764 1.940613 GGAGATGCCATAACAACGTCC 59.059 52.381 0.00 0.00 36.34 4.79
2480 2765 2.627945 GAGATGCCATAACAACGTCCA 58.372 47.619 0.00 0.00 0.00 4.02
2481 2766 2.609459 GAGATGCCATAACAACGTCCAG 59.391 50.000 0.00 0.00 0.00 3.86
2482 2767 2.236146 AGATGCCATAACAACGTCCAGA 59.764 45.455 0.00 0.00 0.00 3.86
2483 2768 2.552599 TGCCATAACAACGTCCAGAA 57.447 45.000 0.00 0.00 0.00 3.02
2484 2769 2.147958 TGCCATAACAACGTCCAGAAC 58.852 47.619 0.00 0.00 0.00 3.01
2485 2770 2.147958 GCCATAACAACGTCCAGAACA 58.852 47.619 0.00 0.00 0.00 3.18
2486 2771 2.095919 GCCATAACAACGTCCAGAACAC 60.096 50.000 0.00 0.00 0.00 3.32
2487 2772 2.156891 CCATAACAACGTCCAGAACACG 59.843 50.000 0.00 0.00 43.13 4.49
2488 2773 2.867287 TAACAACGTCCAGAACACGA 57.133 45.000 0.00 0.00 39.75 4.35
2489 2774 2.234300 AACAACGTCCAGAACACGAT 57.766 45.000 0.00 0.00 39.75 3.73
2490 2775 2.234300 ACAACGTCCAGAACACGATT 57.766 45.000 0.00 0.00 39.75 3.34
2491 2776 1.864711 ACAACGTCCAGAACACGATTG 59.135 47.619 0.00 3.29 39.75 2.67
2492 2777 0.865769 AACGTCCAGAACACGATTGC 59.134 50.000 0.00 0.00 39.75 3.56
2493 2778 0.249699 ACGTCCAGAACACGATTGCA 60.250 50.000 0.00 0.00 39.75 4.08
2494 2779 0.439985 CGTCCAGAACACGATTGCAG 59.560 55.000 0.00 0.00 39.75 4.41
2495 2780 0.798776 GTCCAGAACACGATTGCAGG 59.201 55.000 0.00 0.00 0.00 4.85
2496 2781 0.684535 TCCAGAACACGATTGCAGGA 59.315 50.000 0.00 0.00 0.00 3.86
2497 2782 1.081892 CCAGAACACGATTGCAGGAG 58.918 55.000 0.00 0.00 0.00 3.69
2498 2783 1.609061 CCAGAACACGATTGCAGGAGT 60.609 52.381 0.00 0.00 0.00 3.85
2499 2784 1.728971 CAGAACACGATTGCAGGAGTC 59.271 52.381 0.00 0.00 0.00 3.36
2500 2785 1.620819 AGAACACGATTGCAGGAGTCT 59.379 47.619 0.00 0.00 0.00 3.24
2501 2786 2.826128 AGAACACGATTGCAGGAGTCTA 59.174 45.455 0.00 0.00 0.00 2.59
2502 2787 3.449018 AGAACACGATTGCAGGAGTCTAT 59.551 43.478 0.00 0.00 0.00 1.98
2503 2788 3.444703 ACACGATTGCAGGAGTCTATC 57.555 47.619 0.00 0.00 0.00 2.08
2504 2789 3.027412 ACACGATTGCAGGAGTCTATCT 58.973 45.455 0.00 0.00 0.00 1.98
2505 2790 4.207955 ACACGATTGCAGGAGTCTATCTA 58.792 43.478 0.00 0.00 0.00 1.98
2506 2791 4.645136 ACACGATTGCAGGAGTCTATCTAA 59.355 41.667 0.00 0.00 0.00 2.10
2507 2792 5.303078 ACACGATTGCAGGAGTCTATCTAAT 59.697 40.000 0.00 0.00 0.00 1.73
2508 2793 6.490381 ACACGATTGCAGGAGTCTATCTAATA 59.510 38.462 0.00 0.00 0.00 0.98
2509 2794 6.804295 CACGATTGCAGGAGTCTATCTAATAC 59.196 42.308 0.00 0.00 0.00 1.89
2510 2795 6.071840 ACGATTGCAGGAGTCTATCTAATACC 60.072 42.308 0.00 0.00 0.00 2.73
2511 2796 5.707242 TTGCAGGAGTCTATCTAATACCG 57.293 43.478 0.00 0.00 0.00 4.02
2512 2797 4.726583 TGCAGGAGTCTATCTAATACCGT 58.273 43.478 0.00 0.00 0.00 4.83
2513 2798 5.138276 TGCAGGAGTCTATCTAATACCGTT 58.862 41.667 0.00 0.00 0.00 4.44
2514 2799 5.597182 TGCAGGAGTCTATCTAATACCGTTT 59.403 40.000 0.00 0.00 0.00 3.60
2515 2800 6.151004 GCAGGAGTCTATCTAATACCGTTTC 58.849 44.000 0.00 0.00 0.00 2.78
2516 2801 6.372185 CAGGAGTCTATCTAATACCGTTTCG 58.628 44.000 0.00 0.00 0.00 3.46
2517 2802 6.204301 CAGGAGTCTATCTAATACCGTTTCGA 59.796 42.308 0.00 0.00 0.00 3.71
2518 2803 6.427547 AGGAGTCTATCTAATACCGTTTCGAG 59.572 42.308 0.00 0.00 0.00 4.04
2519 2804 6.204495 GGAGTCTATCTAATACCGTTTCGAGT 59.796 42.308 0.00 0.00 0.00 4.18
2520 2805 7.255070 GGAGTCTATCTAATACCGTTTCGAGTT 60.255 40.741 0.00 0.00 0.00 3.01
2521 2806 7.994194 AGTCTATCTAATACCGTTTCGAGTTT 58.006 34.615 0.00 0.00 0.00 2.66
2522 2807 9.113838 AGTCTATCTAATACCGTTTCGAGTTTA 57.886 33.333 0.00 0.00 0.00 2.01
2523 2808 9.163903 GTCTATCTAATACCGTTTCGAGTTTAC 57.836 37.037 0.00 0.00 0.00 2.01
2524 2809 9.113838 TCTATCTAATACCGTTTCGAGTTTACT 57.886 33.333 0.00 0.00 0.00 2.24
2525 2810 7.982371 ATCTAATACCGTTTCGAGTTTACTG 57.018 36.000 0.00 0.00 0.00 2.74
2526 2811 4.916099 AATACCGTTTCGAGTTTACTGC 57.084 40.909 0.00 0.00 0.00 4.40
2527 2812 2.228138 ACCGTTTCGAGTTTACTGCA 57.772 45.000 0.00 0.00 0.00 4.41
2528 2813 1.862827 ACCGTTTCGAGTTTACTGCAC 59.137 47.619 0.00 0.00 0.00 4.57
2529 2814 1.136721 CCGTTTCGAGTTTACTGCACG 60.137 52.381 0.00 0.00 0.00 5.34
2530 2815 1.782569 CGTTTCGAGTTTACTGCACGA 59.217 47.619 0.00 0.00 0.00 4.35
2531 2816 2.216940 CGTTTCGAGTTTACTGCACGAA 59.783 45.455 2.37 2.37 40.30 3.85
2532 2817 3.121126 CGTTTCGAGTTTACTGCACGAAT 60.121 43.478 6.85 0.00 41.30 3.34
2533 2818 4.141680 GTTTCGAGTTTACTGCACGAATG 58.858 43.478 6.85 0.00 41.30 2.67
2534 2819 3.021269 TCGAGTTTACTGCACGAATGT 57.979 42.857 0.00 0.00 0.00 2.71
2535 2820 3.386486 TCGAGTTTACTGCACGAATGTT 58.614 40.909 0.00 0.00 0.00 2.71
2536 2821 3.183574 TCGAGTTTACTGCACGAATGTTG 59.816 43.478 0.00 0.00 0.00 3.33
2537 2822 3.059868 CGAGTTTACTGCACGAATGTTGT 60.060 43.478 0.00 0.00 0.00 3.32
2538 2823 4.209452 AGTTTACTGCACGAATGTTGTG 57.791 40.909 0.00 0.00 40.32 3.33
2539 2824 3.625764 AGTTTACTGCACGAATGTTGTGT 59.374 39.130 0.00 0.00 39.53 3.72
2540 2825 3.600717 TTACTGCACGAATGTTGTGTG 57.399 42.857 0.00 0.00 39.53 3.82
2541 2826 1.378531 ACTGCACGAATGTTGTGTGT 58.621 45.000 0.00 0.00 39.53 3.72
2542 2827 2.556257 ACTGCACGAATGTTGTGTGTA 58.444 42.857 0.00 0.00 39.53 2.90
2543 2828 2.939756 ACTGCACGAATGTTGTGTGTAA 59.060 40.909 0.00 0.00 39.53 2.41
2544 2829 3.563808 ACTGCACGAATGTTGTGTGTAAT 59.436 39.130 0.00 0.00 39.53 1.89
2545 2830 4.036262 ACTGCACGAATGTTGTGTGTAATT 59.964 37.500 0.00 0.00 39.53 1.40
2546 2831 4.286101 TGCACGAATGTTGTGTGTAATTG 58.714 39.130 0.00 0.00 39.53 2.32
2547 2832 4.035675 TGCACGAATGTTGTGTGTAATTGA 59.964 37.500 0.00 0.00 39.53 2.57
2548 2833 5.153513 GCACGAATGTTGTGTGTAATTGAT 58.846 37.500 0.00 0.00 39.53 2.57
2549 2834 5.629020 GCACGAATGTTGTGTGTAATTGATT 59.371 36.000 0.00 0.00 39.53 2.57
2550 2835 6.799441 GCACGAATGTTGTGTGTAATTGATTA 59.201 34.615 0.00 0.00 39.53 1.75
2551 2836 7.324856 GCACGAATGTTGTGTGTAATTGATTAA 59.675 33.333 0.00 0.00 39.53 1.40
2552 2837 8.626576 CACGAATGTTGTGTGTAATTGATTAAC 58.373 33.333 0.00 0.00 32.68 2.01
2553 2838 8.564574 ACGAATGTTGTGTGTAATTGATTAACT 58.435 29.630 0.00 0.00 0.00 2.24
2554 2839 8.839914 CGAATGTTGTGTGTAATTGATTAACTG 58.160 33.333 0.00 0.00 0.00 3.16
2555 2840 9.128107 GAATGTTGTGTGTAATTGATTAACTGG 57.872 33.333 0.00 0.00 0.00 4.00
2556 2841 7.575414 TGTTGTGTGTAATTGATTAACTGGT 57.425 32.000 0.00 0.00 0.00 4.00
2557 2842 8.001881 TGTTGTGTGTAATTGATTAACTGGTT 57.998 30.769 0.00 0.00 0.00 3.67
2558 2843 7.918033 TGTTGTGTGTAATTGATTAACTGGTTG 59.082 33.333 0.00 0.00 0.00 3.77
2559 2844 7.809546 TGTGTGTAATTGATTAACTGGTTGA 57.190 32.000 0.00 0.00 0.00 3.18
2560 2845 8.402798 TGTGTGTAATTGATTAACTGGTTGAT 57.597 30.769 0.00 0.00 0.00 2.57
2561 2846 8.296000 TGTGTGTAATTGATTAACTGGTTGATG 58.704 33.333 0.00 0.00 0.00 3.07
2562 2847 7.273381 GTGTGTAATTGATTAACTGGTTGATGC 59.727 37.037 0.00 0.00 0.00 3.91
2563 2848 7.040132 TGTGTAATTGATTAACTGGTTGATGCA 60.040 33.333 0.00 0.00 0.00 3.96
2564 2849 7.273381 GTGTAATTGATTAACTGGTTGATGCAC 59.727 37.037 0.00 0.00 0.00 4.57
2565 2850 4.418013 TTGATTAACTGGTTGATGCACG 57.582 40.909 0.00 0.00 0.00 5.34
2566 2851 3.669536 TGATTAACTGGTTGATGCACGA 58.330 40.909 0.00 0.00 0.00 4.35
2567 2852 3.684305 TGATTAACTGGTTGATGCACGAG 59.316 43.478 0.00 0.00 0.00 4.18
2568 2853 3.394674 TTAACTGGTTGATGCACGAGA 57.605 42.857 0.00 0.00 0.00 4.04
2569 2854 1.512926 AACTGGTTGATGCACGAGAC 58.487 50.000 0.00 0.00 0.00 3.36
2570 2855 0.667487 ACTGGTTGATGCACGAGACG 60.667 55.000 0.00 0.00 0.00 4.18
2571 2856 1.959899 CTGGTTGATGCACGAGACGC 61.960 60.000 0.00 0.00 0.00 5.19
2572 2857 1.738099 GGTTGATGCACGAGACGCT 60.738 57.895 0.00 0.00 0.00 5.07
2573 2858 1.417592 GTTGATGCACGAGACGCTG 59.582 57.895 0.00 0.00 0.00 5.18
2574 2859 1.008875 GTTGATGCACGAGACGCTGA 61.009 55.000 0.00 0.00 0.00 4.26
2575 2860 0.733909 TTGATGCACGAGACGCTGAG 60.734 55.000 0.00 0.00 0.00 3.35
2576 2861 1.875813 GATGCACGAGACGCTGAGG 60.876 63.158 0.00 0.00 0.00 3.86
2577 2862 3.362399 ATGCACGAGACGCTGAGGG 62.362 63.158 0.00 0.00 0.00 4.30
2595 2880 3.697444 CGTGTGCGTGCGTGCTAA 61.697 61.111 1.52 0.00 35.36 3.09
2596 2881 2.860293 GTGTGCGTGCGTGCTAAT 59.140 55.556 1.52 0.00 35.36 1.73
2597 2882 1.206578 GTGTGCGTGCGTGCTAATT 59.793 52.632 1.52 0.00 35.36 1.40
2598 2883 0.385473 GTGTGCGTGCGTGCTAATTT 60.385 50.000 1.52 0.00 35.36 1.82
2599 2884 0.110419 TGTGCGTGCGTGCTAATTTC 60.110 50.000 1.52 0.00 35.36 2.17
2600 2885 0.110419 GTGCGTGCGTGCTAATTTCA 60.110 50.000 1.52 0.00 35.36 2.69
2601 2886 0.588737 TGCGTGCGTGCTAATTTCAA 59.411 45.000 1.52 0.00 35.36 2.69
2602 2887 1.198867 TGCGTGCGTGCTAATTTCAAT 59.801 42.857 1.52 0.00 35.36 2.57
2603 2888 2.250188 GCGTGCGTGCTAATTTCAATT 58.750 42.857 0.00 0.00 0.00 2.32
2604 2889 2.026742 GCGTGCGTGCTAATTTCAATTG 59.973 45.455 0.00 0.00 0.00 2.32
2605 2890 3.487536 CGTGCGTGCTAATTTCAATTGA 58.512 40.909 3.38 3.38 0.00 2.57
2606 2891 3.539563 CGTGCGTGCTAATTTCAATTGAG 59.460 43.478 8.41 0.00 0.00 3.02
2607 2892 4.668941 CGTGCGTGCTAATTTCAATTGAGA 60.669 41.667 8.41 4.49 0.00 3.27
2608 2893 5.153513 GTGCGTGCTAATTTCAATTGAGAA 58.846 37.500 8.41 6.85 0.00 2.87
2609 2894 5.801947 GTGCGTGCTAATTTCAATTGAGAAT 59.198 36.000 8.41 8.74 0.00 2.40
2610 2895 6.308766 GTGCGTGCTAATTTCAATTGAGAATT 59.691 34.615 21.47 21.47 0.00 2.17
2611 2896 6.527722 TGCGTGCTAATTTCAATTGAGAATTC 59.472 34.615 21.42 14.03 0.00 2.17
2612 2897 6.749118 GCGTGCTAATTTCAATTGAGAATTCT 59.251 34.615 21.42 7.95 0.00 2.40
2613 2898 7.253552 GCGTGCTAATTTCAATTGAGAATTCTG 60.254 37.037 14.00 17.87 0.00 3.02
2614 2899 7.253552 CGTGCTAATTTCAATTGAGAATTCTGC 60.254 37.037 14.00 22.81 0.00 4.26
2615 2900 7.009907 GTGCTAATTTCAATTGAGAATTCTGCC 59.990 37.037 25.25 19.81 0.00 4.85
2616 2901 7.093640 TGCTAATTTCAATTGAGAATTCTGCCT 60.094 33.333 25.25 13.19 0.00 4.75
2617 2902 7.763071 GCTAATTTCAATTGAGAATTCTGCCTT 59.237 33.333 14.00 0.00 0.00 4.35
2618 2903 9.649167 CTAATTTCAATTGAGAATTCTGCCTTT 57.351 29.630 14.00 0.00 0.00 3.11
2619 2904 8.913487 AATTTCAATTGAGAATTCTGCCTTTT 57.087 26.923 14.00 0.00 0.00 2.27
2620 2905 7.951530 TTTCAATTGAGAATTCTGCCTTTTC 57.048 32.000 14.00 0.00 0.00 2.29
2621 2906 5.702865 TCAATTGAGAATTCTGCCTTTTCG 58.297 37.500 14.00 0.00 0.00 3.46
2622 2907 5.241506 TCAATTGAGAATTCTGCCTTTTCGT 59.758 36.000 14.00 0.00 0.00 3.85
2623 2908 6.429692 TCAATTGAGAATTCTGCCTTTTCGTA 59.570 34.615 14.00 0.00 0.00 3.43
2624 2909 7.121168 TCAATTGAGAATTCTGCCTTTTCGTAT 59.879 33.333 14.00 0.00 0.00 3.06
2625 2910 8.397906 CAATTGAGAATTCTGCCTTTTCGTATA 58.602 33.333 14.00 0.00 0.00 1.47
2626 2911 8.682936 ATTGAGAATTCTGCCTTTTCGTATAT 57.317 30.769 14.00 0.00 0.00 0.86
2627 2912 7.715265 TGAGAATTCTGCCTTTTCGTATATC 57.285 36.000 14.00 0.00 0.00 1.63
2628 2913 7.272244 TGAGAATTCTGCCTTTTCGTATATCA 58.728 34.615 14.00 0.00 0.00 2.15
2629 2914 7.224753 TGAGAATTCTGCCTTTTCGTATATCAC 59.775 37.037 14.00 0.00 0.00 3.06
2630 2915 6.483640 AGAATTCTGCCTTTTCGTATATCACC 59.516 38.462 7.30 0.00 0.00 4.02
2631 2916 4.067972 TCTGCCTTTTCGTATATCACCC 57.932 45.455 0.00 0.00 0.00 4.61
2632 2917 3.452990 TCTGCCTTTTCGTATATCACCCA 59.547 43.478 0.00 0.00 0.00 4.51
2633 2918 4.102524 TCTGCCTTTTCGTATATCACCCAT 59.897 41.667 0.00 0.00 0.00 4.00
2634 2919 4.385825 TGCCTTTTCGTATATCACCCATC 58.614 43.478 0.00 0.00 0.00 3.51
2635 2920 4.141597 TGCCTTTTCGTATATCACCCATCA 60.142 41.667 0.00 0.00 0.00 3.07
2636 2921 5.003804 GCCTTTTCGTATATCACCCATCAT 58.996 41.667 0.00 0.00 0.00 2.45
2637 2922 5.106555 GCCTTTTCGTATATCACCCATCATG 60.107 44.000 0.00 0.00 0.00 3.07
2638 2923 6.230472 CCTTTTCGTATATCACCCATCATGA 58.770 40.000 0.00 0.00 0.00 3.07
2639 2924 6.881065 CCTTTTCGTATATCACCCATCATGAT 59.119 38.462 1.18 1.18 40.02 2.45
2640 2925 7.391554 CCTTTTCGTATATCACCCATCATGATT 59.608 37.037 5.16 0.00 37.89 2.57
2641 2926 7.671495 TTTCGTATATCACCCATCATGATTG 57.329 36.000 5.16 2.12 37.89 2.67
2642 2927 6.358974 TCGTATATCACCCATCATGATTGT 57.641 37.500 5.16 3.55 37.89 2.71
2643 2928 6.398095 TCGTATATCACCCATCATGATTGTC 58.602 40.000 5.16 0.00 37.89 3.18
2644 2929 5.289434 CGTATATCACCCATCATGATTGTCG 59.711 44.000 5.16 2.00 37.89 4.35
2645 2930 3.565764 ATCACCCATCATGATTGTCGT 57.434 42.857 5.16 0.00 32.77 4.34
2646 2931 3.348647 TCACCCATCATGATTGTCGTT 57.651 42.857 5.16 0.00 0.00 3.85
2647 2932 3.009026 TCACCCATCATGATTGTCGTTG 58.991 45.455 5.16 0.00 0.00 4.10
2648 2933 2.097954 CACCCATCATGATTGTCGTTGG 59.902 50.000 5.16 3.75 0.00 3.77
2649 2934 1.677576 CCCATCATGATTGTCGTTGGG 59.322 52.381 12.71 12.71 36.65 4.12
2650 2935 2.368439 CCATCATGATTGTCGTTGGGT 58.632 47.619 5.16 0.00 0.00 4.51
2651 2936 2.754552 CCATCATGATTGTCGTTGGGTT 59.245 45.455 5.16 0.00 0.00 4.11
2652 2937 3.944650 CCATCATGATTGTCGTTGGGTTA 59.055 43.478 5.16 0.00 0.00 2.85
2653 2938 4.580167 CCATCATGATTGTCGTTGGGTTAT 59.420 41.667 5.16 0.00 0.00 1.89
2654 2939 5.506151 CCATCATGATTGTCGTTGGGTTATG 60.506 44.000 5.16 0.00 0.00 1.90
2655 2940 3.376859 TCATGATTGTCGTTGGGTTATGC 59.623 43.478 0.00 0.00 0.00 3.14
2656 2941 2.088423 TGATTGTCGTTGGGTTATGCC 58.912 47.619 0.00 0.00 0.00 4.40
2657 2942 1.063469 GATTGTCGTTGGGTTATGCCG 59.937 52.381 0.00 0.00 38.44 5.69
2658 2943 1.579084 TTGTCGTTGGGTTATGCCGC 61.579 55.000 0.00 0.00 38.44 6.53
2659 2944 2.816083 TCGTTGGGTTATGCCGCG 60.816 61.111 0.00 0.00 38.44 6.46
2660 2945 4.530325 CGTTGGGTTATGCCGCGC 62.530 66.667 0.00 0.00 38.44 6.86
2661 2946 3.131478 GTTGGGTTATGCCGCGCT 61.131 61.111 5.56 0.00 38.44 5.92
2662 2947 2.360600 TTGGGTTATGCCGCGCTT 60.361 55.556 5.56 0.00 38.44 4.68
2663 2948 2.695759 TTGGGTTATGCCGCGCTTG 61.696 57.895 5.56 0.00 38.44 4.01
2664 2949 4.552745 GGGTTATGCCGCGCTTGC 62.553 66.667 5.56 9.04 38.44 4.01
2665 2950 3.809775 GGTTATGCCGCGCTTGCA 61.810 61.111 21.25 21.25 43.97 4.08
2667 2952 1.655350 GTTATGCCGCGCTTGCATC 60.655 57.895 29.69 17.27 46.04 3.91
2668 2953 1.819208 TTATGCCGCGCTTGCATCT 60.819 52.632 29.69 16.02 46.04 2.90
2669 2954 1.375853 TTATGCCGCGCTTGCATCTT 61.376 50.000 29.69 15.42 46.04 2.40
2670 2955 1.375853 TATGCCGCGCTTGCATCTTT 61.376 50.000 29.69 15.12 46.04 2.52
2671 2956 2.577911 GCCGCGCTTGCATCTTTC 60.578 61.111 5.56 0.00 39.07 2.62
2672 2957 3.044059 GCCGCGCTTGCATCTTTCT 62.044 57.895 5.56 0.00 39.07 2.52
2673 2958 1.705337 GCCGCGCTTGCATCTTTCTA 61.705 55.000 5.56 0.00 39.07 2.10
2674 2959 0.026803 CCGCGCTTGCATCTTTCTAC 59.973 55.000 5.56 0.00 39.07 2.59
2675 2960 0.721154 CGCGCTTGCATCTTTCTACA 59.279 50.000 5.56 0.00 39.07 2.74
2676 2961 1.527793 CGCGCTTGCATCTTTCTACAC 60.528 52.381 5.56 0.00 39.07 2.90
2677 2962 1.527793 GCGCTTGCATCTTTCTACACG 60.528 52.381 0.00 0.00 38.92 4.49
2678 2963 1.992667 CGCTTGCATCTTTCTACACGA 59.007 47.619 0.00 0.00 0.00 4.35
2679 2964 2.604914 CGCTTGCATCTTTCTACACGAT 59.395 45.455 0.00 0.00 0.00 3.73
2680 2965 3.542875 CGCTTGCATCTTTCTACACGATG 60.543 47.826 0.00 0.00 38.02 3.84
2681 2966 3.242543 GCTTGCATCTTTCTACACGATGG 60.243 47.826 0.00 0.00 36.07 3.51
2682 2967 3.885724 TGCATCTTTCTACACGATGGA 57.114 42.857 0.00 0.00 36.07 3.41
2683 2968 3.785486 TGCATCTTTCTACACGATGGAG 58.215 45.455 0.00 0.00 36.07 3.86
2684 2969 3.447229 TGCATCTTTCTACACGATGGAGA 59.553 43.478 0.00 0.00 35.03 3.71
2685 2970 4.100035 TGCATCTTTCTACACGATGGAGAT 59.900 41.667 0.00 0.00 37.15 2.75
2686 2971 4.447054 GCATCTTTCTACACGATGGAGATG 59.553 45.833 0.00 0.00 37.15 2.90
2687 2972 4.655762 TCTTTCTACACGATGGAGATGG 57.344 45.455 0.00 0.00 37.15 3.51
2688 2973 4.278310 TCTTTCTACACGATGGAGATGGA 58.722 43.478 0.00 0.00 37.15 3.41
2689 2974 4.709886 TCTTTCTACACGATGGAGATGGAA 59.290 41.667 0.00 0.00 37.15 3.53
2690 2975 5.186992 TCTTTCTACACGATGGAGATGGAAA 59.813 40.000 0.00 0.00 37.15 3.13
2691 2976 4.386867 TCTACACGATGGAGATGGAAAC 57.613 45.455 0.00 0.00 30.99 2.78
2692 2977 2.403252 ACACGATGGAGATGGAAACC 57.597 50.000 0.00 0.00 0.00 3.27
2693 2978 1.628340 ACACGATGGAGATGGAAACCA 59.372 47.619 0.00 0.00 38.19 3.67
2694 2979 2.283298 CACGATGGAGATGGAAACCAG 58.717 52.381 0.00 0.00 36.75 4.00
2695 2980 1.210478 ACGATGGAGATGGAAACCAGG 59.790 52.381 0.00 0.00 36.75 4.45
2696 2981 1.486310 CGATGGAGATGGAAACCAGGA 59.514 52.381 0.00 0.00 36.75 3.86
2697 2982 2.092968 CGATGGAGATGGAAACCAGGAA 60.093 50.000 0.00 0.00 36.75 3.36
2698 2983 3.622206 CGATGGAGATGGAAACCAGGAAA 60.622 47.826 0.00 0.00 36.75 3.13
2699 2984 3.893753 TGGAGATGGAAACCAGGAAAA 57.106 42.857 0.00 0.00 36.75 2.29
2700 2985 3.766545 TGGAGATGGAAACCAGGAAAAG 58.233 45.455 0.00 0.00 36.75 2.27
2701 2986 3.397618 TGGAGATGGAAACCAGGAAAAGA 59.602 43.478 0.00 0.00 36.75 2.52
2702 2987 4.013050 GGAGATGGAAACCAGGAAAAGAG 58.987 47.826 0.00 0.00 36.75 2.85
2703 2988 4.263506 GGAGATGGAAACCAGGAAAAGAGA 60.264 45.833 0.00 0.00 36.75 3.10
2704 2989 5.504853 GAGATGGAAACCAGGAAAAGAGAT 58.495 41.667 0.00 0.00 36.75 2.75
2705 2990 5.259632 AGATGGAAACCAGGAAAAGAGATG 58.740 41.667 0.00 0.00 36.75 2.90
2706 2991 4.453480 TGGAAACCAGGAAAAGAGATGT 57.547 40.909 0.00 0.00 0.00 3.06
2707 2992 4.144297 TGGAAACCAGGAAAAGAGATGTG 58.856 43.478 0.00 0.00 0.00 3.21
2708 2993 3.057245 GGAAACCAGGAAAAGAGATGTGC 60.057 47.826 0.00 0.00 0.00 4.57
2709 2994 2.206576 ACCAGGAAAAGAGATGTGCC 57.793 50.000 0.00 0.00 0.00 5.01
2710 2995 1.089920 CCAGGAAAAGAGATGTGCCG 58.910 55.000 0.00 0.00 0.00 5.69
2711 2996 1.089920 CAGGAAAAGAGATGTGCCGG 58.910 55.000 0.00 0.00 0.00 6.13
2712 2997 0.693049 AGGAAAAGAGATGTGCCGGT 59.307 50.000 1.90 0.00 0.00 5.28
2713 2998 0.804989 GGAAAAGAGATGTGCCGGTG 59.195 55.000 1.90 0.00 0.00 4.94
2714 2999 0.169009 GAAAAGAGATGTGCCGGTGC 59.831 55.000 1.90 0.00 38.26 5.01
2715 3000 1.244019 AAAAGAGATGTGCCGGTGCC 61.244 55.000 1.90 0.00 36.33 5.01
2716 3001 3.958147 AAGAGATGTGCCGGTGCCG 62.958 63.158 1.90 3.25 36.33 5.69
2726 3011 3.576356 CGGTGCCGGCTAGCAATG 61.576 66.667 29.70 6.49 46.19 2.82
2727 3012 3.211963 GGTGCCGGCTAGCAATGG 61.212 66.667 29.70 15.67 46.19 3.16
2728 3013 2.438434 GTGCCGGCTAGCAATGGT 60.438 61.111 29.70 0.00 46.19 3.55
2729 3014 2.438254 TGCCGGCTAGCAATGGTG 60.438 61.111 29.70 0.00 40.56 4.17
2730 3015 3.211963 GCCGGCTAGCAATGGTGG 61.212 66.667 22.15 8.81 0.00 4.61
2731 3016 3.211963 CCGGCTAGCAATGGTGGC 61.212 66.667 18.24 12.37 36.82 5.01
2732 3017 2.124570 CGGCTAGCAATGGTGGCT 60.125 61.111 19.42 0.00 45.18 4.75
2733 3018 1.146041 CGGCTAGCAATGGTGGCTA 59.854 57.895 19.42 0.00 42.62 3.93
2734 3019 0.463654 CGGCTAGCAATGGTGGCTAA 60.464 55.000 19.42 0.00 42.80 3.09
2735 3020 1.312815 GGCTAGCAATGGTGGCTAAG 58.687 55.000 19.42 0.00 42.80 2.18
2736 3021 0.665298 GCTAGCAATGGTGGCTAAGC 59.335 55.000 13.46 0.88 42.80 3.09
2737 3022 1.748591 GCTAGCAATGGTGGCTAAGCT 60.749 52.381 13.46 0.00 42.80 3.74
2738 3023 2.485479 GCTAGCAATGGTGGCTAAGCTA 60.485 50.000 13.46 0.00 42.80 3.32
2739 3024 2.338577 AGCAATGGTGGCTAAGCTAG 57.661 50.000 0.00 0.00 40.47 3.42
2740 3025 1.133976 AGCAATGGTGGCTAAGCTAGG 60.134 52.381 0.00 0.00 40.47 3.02
2747 3032 1.674637 GGCTAAGCTAGGCCTAGGC 59.325 63.158 35.44 28.98 44.82 3.93
2758 3043 4.297207 CCTAGGCCTAGGTCACCC 57.703 66.667 40.59 5.52 45.93 4.61
2759 3044 1.313475 CCTAGGCCTAGGTCACCCA 59.687 63.158 40.59 8.29 45.93 4.51
2760 3045 0.104934 CCTAGGCCTAGGTCACCCAT 60.105 60.000 40.59 4.23 45.93 4.00
2761 3046 1.051812 CTAGGCCTAGGTCACCCATG 58.948 60.000 29.47 2.92 0.00 3.66
2762 3047 0.341961 TAGGCCTAGGTCACCCATGT 59.658 55.000 17.52 0.00 0.00 3.21
2763 3048 0.550147 AGGCCTAGGTCACCCATGTT 60.550 55.000 17.52 0.00 0.00 2.71
2764 3049 0.394352 GGCCTAGGTCACCCATGTTG 60.394 60.000 9.01 0.00 0.00 3.33
2765 3050 0.394352 GCCTAGGTCACCCATGTTGG 60.394 60.000 11.31 0.00 37.25 3.77
2766 3051 0.991920 CCTAGGTCACCCATGTTGGT 59.008 55.000 0.00 0.00 39.96 3.67
2772 3057 4.950200 ACCCATGTTGGTGTGCAT 57.050 50.000 0.00 0.00 37.20 3.96
2774 3059 2.300956 ACCCATGTTGGTGTGCATAA 57.699 45.000 0.00 0.00 37.20 1.90
2775 3060 2.170166 ACCCATGTTGGTGTGCATAAG 58.830 47.619 0.00 0.00 37.20 1.73
2776 3061 1.477700 CCCATGTTGGTGTGCATAAGG 59.522 52.381 0.00 0.00 35.17 2.69
2777 3062 1.477700 CCATGTTGGTGTGCATAAGGG 59.522 52.381 0.00 0.00 31.35 3.95
2778 3063 1.135024 CATGTTGGTGTGCATAAGGGC 60.135 52.381 0.00 0.00 0.00 5.19
2779 3064 0.178978 TGTTGGTGTGCATAAGGGCA 60.179 50.000 0.00 0.00 42.53 5.36
2780 3065 1.185315 GTTGGTGTGCATAAGGGCAT 58.815 50.000 0.00 0.00 46.92 4.40
2781 3066 1.134946 GTTGGTGTGCATAAGGGCATC 59.865 52.381 0.00 0.00 46.92 3.91
2782 3067 0.625316 TGGTGTGCATAAGGGCATCT 59.375 50.000 0.00 0.00 46.92 2.90
2783 3068 1.005805 TGGTGTGCATAAGGGCATCTT 59.994 47.619 0.00 0.00 46.92 2.40
2784 3069 1.678101 GGTGTGCATAAGGGCATCTTC 59.322 52.381 0.00 0.00 46.92 2.87
2785 3070 2.368439 GTGTGCATAAGGGCATCTTCA 58.632 47.619 0.00 0.00 46.92 3.02
2786 3071 2.357009 GTGTGCATAAGGGCATCTTCAG 59.643 50.000 0.00 0.00 46.92 3.02
2787 3072 2.025981 TGTGCATAAGGGCATCTTCAGT 60.026 45.455 0.00 0.00 46.92 3.41
2788 3073 2.615912 GTGCATAAGGGCATCTTCAGTC 59.384 50.000 0.00 0.00 46.92 3.51
2789 3074 1.869767 GCATAAGGGCATCTTCAGTCG 59.130 52.381 0.00 0.00 36.93 4.18
2790 3075 2.743183 GCATAAGGGCATCTTCAGTCGT 60.743 50.000 0.00 0.00 36.93 4.34
2791 3076 3.535561 CATAAGGGCATCTTCAGTCGTT 58.464 45.455 0.00 0.00 36.93 3.85
2792 3077 1.813513 AAGGGCATCTTCAGTCGTTG 58.186 50.000 0.00 0.00 0.00 4.10
2793 3078 0.036010 AGGGCATCTTCAGTCGTTGG 60.036 55.000 0.00 0.00 0.00 3.77
2794 3079 0.321653 GGGCATCTTCAGTCGTTGGT 60.322 55.000 0.00 0.00 0.00 3.67
2795 3080 1.523758 GGCATCTTCAGTCGTTGGTT 58.476 50.000 0.00 0.00 0.00 3.67
2796 3081 1.880027 GGCATCTTCAGTCGTTGGTTT 59.120 47.619 0.00 0.00 0.00 3.27
2797 3082 2.293399 GGCATCTTCAGTCGTTGGTTTT 59.707 45.455 0.00 0.00 0.00 2.43
2798 3083 3.243401 GGCATCTTCAGTCGTTGGTTTTT 60.243 43.478 0.00 0.00 0.00 1.94
2828 3113 3.356814 AAAAATCACCCCTGGGACG 57.643 52.632 16.20 4.48 38.96 4.79
2829 3114 0.898326 AAAAATCACCCCTGGGACGC 60.898 55.000 16.20 0.00 38.96 5.19
2830 3115 2.075355 AAAATCACCCCTGGGACGCA 62.075 55.000 16.20 0.00 38.96 5.24
2831 3116 2.764637 AAATCACCCCTGGGACGCAC 62.765 60.000 16.20 0.00 38.96 5.34
2853 3138 2.778679 GCTAAACCGCGCACTGAG 59.221 61.111 8.75 0.00 0.00 3.35
2854 3139 2.740714 GCTAAACCGCGCACTGAGG 61.741 63.158 8.75 1.66 44.31 3.86
2855 3140 1.080093 CTAAACCGCGCACTGAGGA 60.080 57.895 8.75 0.00 40.56 3.71
2856 3141 1.352156 CTAAACCGCGCACTGAGGAC 61.352 60.000 8.75 0.00 40.56 3.85
2860 3145 4.700365 CGCGCACTGAGGACGTGA 62.700 66.667 8.75 0.00 39.54 4.35
2861 3146 2.125912 GCGCACTGAGGACGTGAT 60.126 61.111 0.30 0.00 34.35 3.06
2862 3147 2.447887 GCGCACTGAGGACGTGATG 61.448 63.158 0.30 0.00 34.35 3.07
2863 3148 2.447887 CGCACTGAGGACGTGATGC 61.448 63.158 0.00 0.00 34.35 3.91
2864 3149 2.103042 GCACTGAGGACGTGATGCC 61.103 63.158 0.00 0.00 34.35 4.40
2865 3150 1.448540 CACTGAGGACGTGATGCCC 60.449 63.158 0.00 0.00 34.35 5.36
2866 3151 2.187946 CTGAGGACGTGATGCCCC 59.812 66.667 0.00 0.00 0.00 5.80
2867 3152 3.391665 CTGAGGACGTGATGCCCCC 62.392 68.421 0.00 0.00 0.00 5.40
2881 3166 4.410400 CCCCCAGTCGTGGCCTTC 62.410 72.222 3.32 0.00 43.44 3.46
2882 3167 4.410400 CCCCAGTCGTGGCCTTCC 62.410 72.222 3.32 0.00 43.44 3.46
2883 3168 3.636231 CCCAGTCGTGGCCTTCCA 61.636 66.667 3.32 0.00 43.44 3.53
2892 3177 3.448469 TGGCCTTCCACGGATTTTT 57.552 47.368 3.32 0.00 37.47 1.94
2893 3178 2.588464 TGGCCTTCCACGGATTTTTA 57.412 45.000 3.32 0.00 37.47 1.52
2894 3179 2.877866 TGGCCTTCCACGGATTTTTAA 58.122 42.857 3.32 0.00 37.47 1.52
2895 3180 3.231818 TGGCCTTCCACGGATTTTTAAA 58.768 40.909 3.32 0.00 37.47 1.52
2896 3181 3.641906 TGGCCTTCCACGGATTTTTAAAA 59.358 39.130 3.32 0.00 37.47 1.52
2897 3182 4.284746 TGGCCTTCCACGGATTTTTAAAAT 59.715 37.500 3.32 2.23 37.47 1.82
2898 3183 4.629634 GGCCTTCCACGGATTTTTAAAATG 59.370 41.667 7.72 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
402 406 2.038863 TCCAAAAGCCCTCTCTACCA 57.961 50.000 0.00 0.00 0.00 3.25
475 479 1.142060 ACAATGTCAACTTGGACCGGA 59.858 47.619 9.46 0.00 36.97 5.14
588 592 6.144402 GTCACTTAATTGTTGCCTTGATGTTG 59.856 38.462 0.00 0.00 0.00 3.33
741 824 3.438216 TCTGTCCAGCCATCAAATGAA 57.562 42.857 0.00 0.00 0.00 2.57
742 825 3.657398 ATCTGTCCAGCCATCAAATGA 57.343 42.857 0.00 0.00 0.00 2.57
743 826 3.446161 ACAATCTGTCCAGCCATCAAATG 59.554 43.478 0.00 0.00 0.00 2.32
744 827 3.446161 CACAATCTGTCCAGCCATCAAAT 59.554 43.478 0.00 0.00 0.00 2.32
757 840 7.994425 TGACATAACAAATACCACAATCTGT 57.006 32.000 0.00 0.00 0.00 3.41
1155 1312 6.813649 TGTTTAAAACAGCAGCACATTGTTTA 59.186 30.769 10.09 0.00 42.40 2.01
1176 1333 7.809806 GTGATAGTTAGCTTGAATTGCTTGTTT 59.190 33.333 0.00 0.00 41.46 2.83
1249 1406 6.729690 ATTCTTCAAATTGACAACCCTGAA 57.270 33.333 0.00 0.00 0.00 3.02
1324 1481 3.077484 ACAATGACCTGCATAGTGCTT 57.923 42.857 3.41 0.00 45.31 3.91
1849 2025 1.000396 ATGAAGGCCCTTGCAGTCC 60.000 57.895 0.00 0.00 40.13 3.85
1878 2057 5.127356 TCACCTAAACGGATTTGTTGGTTTT 59.873 36.000 0.00 0.00 34.68 2.43
1892 2071 5.571784 TCACATACCTACTCACCTAAACG 57.428 43.478 0.00 0.00 0.00 3.60
1897 2076 5.580998 TCTTCTTCACATACCTACTCACCT 58.419 41.667 0.00 0.00 0.00 4.00
2028 2271 2.705127 ACATCCAAAAGCAACCAATGGT 59.295 40.909 0.00 0.00 42.88 3.55
2055 2299 5.163953 GCACTACAGTCATACATGTTCACAC 60.164 44.000 2.30 0.00 0.00 3.82
2059 2303 5.171476 AGTGCACTACAGTCATACATGTTC 58.829 41.667 20.16 0.00 0.00 3.18
2070 2314 2.172717 ACCAAGGAAAGTGCACTACAGT 59.827 45.455 22.01 5.84 0.00 3.55
2178 2451 9.970553 AATATCATAAGATGGCAATGATGTAGT 57.029 29.630 18.24 1.24 39.90 2.73
2453 2738 0.946221 GTTATGGCATCTCCGAGGCG 60.946 60.000 1.65 0.00 40.46 5.52
2454 2739 0.106708 TGTTATGGCATCTCCGAGGC 59.893 55.000 1.65 0.00 38.72 4.70
2455 2740 2.213499 GTTGTTATGGCATCTCCGAGG 58.787 52.381 1.65 0.00 37.80 4.63
2456 2741 1.860950 CGTTGTTATGGCATCTCCGAG 59.139 52.381 1.65 0.00 37.80 4.63
2457 2742 1.206132 ACGTTGTTATGGCATCTCCGA 59.794 47.619 1.65 0.00 37.80 4.55
2458 2743 1.593006 GACGTTGTTATGGCATCTCCG 59.407 52.381 1.65 3.36 37.80 4.63
2459 2744 1.940613 GGACGTTGTTATGGCATCTCC 59.059 52.381 1.65 0.00 0.00 3.71
2460 2745 2.609459 CTGGACGTTGTTATGGCATCTC 59.391 50.000 1.65 0.00 0.00 2.75
2461 2746 2.236146 TCTGGACGTTGTTATGGCATCT 59.764 45.455 1.65 0.00 0.00 2.90
2462 2747 2.627945 TCTGGACGTTGTTATGGCATC 58.372 47.619 1.65 0.00 0.00 3.91
2463 2748 2.747446 GTTCTGGACGTTGTTATGGCAT 59.253 45.455 4.88 4.88 0.00 4.40
2464 2749 2.147958 GTTCTGGACGTTGTTATGGCA 58.852 47.619 0.00 0.00 0.00 4.92
2465 2750 2.095919 GTGTTCTGGACGTTGTTATGGC 60.096 50.000 0.00 0.00 0.00 4.40
2466 2751 2.156891 CGTGTTCTGGACGTTGTTATGG 59.843 50.000 0.00 0.00 32.06 2.74
2467 2752 3.054166 TCGTGTTCTGGACGTTGTTATG 58.946 45.455 0.00 0.00 38.04 1.90
2468 2753 3.374220 TCGTGTTCTGGACGTTGTTAT 57.626 42.857 0.00 0.00 38.04 1.89
2469 2754 2.867287 TCGTGTTCTGGACGTTGTTA 57.133 45.000 0.00 0.00 38.04 2.41
2470 2755 2.234300 ATCGTGTTCTGGACGTTGTT 57.766 45.000 0.00 0.00 38.04 2.83
2471 2756 1.864711 CAATCGTGTTCTGGACGTTGT 59.135 47.619 0.00 0.00 38.04 3.32
2472 2757 1.398451 GCAATCGTGTTCTGGACGTTG 60.398 52.381 0.00 0.00 38.04 4.10
2473 2758 0.865769 GCAATCGTGTTCTGGACGTT 59.134 50.000 0.00 0.00 38.04 3.99
2474 2759 0.249699 TGCAATCGTGTTCTGGACGT 60.250 50.000 0.00 0.00 38.04 4.34
2475 2760 0.439985 CTGCAATCGTGTTCTGGACG 59.560 55.000 0.00 0.00 38.20 4.79
2476 2761 0.798776 CCTGCAATCGTGTTCTGGAC 59.201 55.000 0.00 0.00 0.00 4.02
2477 2762 0.684535 TCCTGCAATCGTGTTCTGGA 59.315 50.000 0.00 0.00 0.00 3.86
2478 2763 1.081892 CTCCTGCAATCGTGTTCTGG 58.918 55.000 0.00 0.00 0.00 3.86
2479 2764 1.728971 GACTCCTGCAATCGTGTTCTG 59.271 52.381 0.00 0.00 0.00 3.02
2480 2765 1.620819 AGACTCCTGCAATCGTGTTCT 59.379 47.619 0.00 0.00 0.00 3.01
2481 2766 2.086054 AGACTCCTGCAATCGTGTTC 57.914 50.000 0.00 0.00 0.00 3.18
2482 2767 3.449018 AGATAGACTCCTGCAATCGTGTT 59.551 43.478 0.00 0.00 0.00 3.32
2483 2768 3.027412 AGATAGACTCCTGCAATCGTGT 58.973 45.455 0.00 0.00 0.00 4.49
2484 2769 3.724508 AGATAGACTCCTGCAATCGTG 57.275 47.619 0.00 0.00 0.00 4.35
2485 2770 6.071840 GGTATTAGATAGACTCCTGCAATCGT 60.072 42.308 0.00 0.00 0.00 3.73
2486 2771 6.326375 GGTATTAGATAGACTCCTGCAATCG 58.674 44.000 0.00 0.00 0.00 3.34
2487 2772 6.071840 ACGGTATTAGATAGACTCCTGCAATC 60.072 42.308 0.00 0.00 0.00 2.67
2488 2773 5.775701 ACGGTATTAGATAGACTCCTGCAAT 59.224 40.000 0.00 0.00 0.00 3.56
2489 2774 5.138276 ACGGTATTAGATAGACTCCTGCAA 58.862 41.667 0.00 0.00 0.00 4.08
2490 2775 4.726583 ACGGTATTAGATAGACTCCTGCA 58.273 43.478 0.00 0.00 0.00 4.41
2491 2776 5.708877 AACGGTATTAGATAGACTCCTGC 57.291 43.478 0.00 0.00 0.00 4.85
2492 2777 6.204301 TCGAAACGGTATTAGATAGACTCCTG 59.796 42.308 0.00 0.00 0.00 3.86
2493 2778 6.294473 TCGAAACGGTATTAGATAGACTCCT 58.706 40.000 0.00 0.00 0.00 3.69
2494 2779 6.204495 ACTCGAAACGGTATTAGATAGACTCC 59.796 42.308 0.00 0.00 0.00 3.85
2495 2780 7.188468 ACTCGAAACGGTATTAGATAGACTC 57.812 40.000 0.00 0.00 0.00 3.36
2496 2781 7.565323 AACTCGAAACGGTATTAGATAGACT 57.435 36.000 0.00 0.00 0.00 3.24
2497 2782 9.163903 GTAAACTCGAAACGGTATTAGATAGAC 57.836 37.037 0.00 0.00 0.00 2.59
2498 2783 9.113838 AGTAAACTCGAAACGGTATTAGATAGA 57.886 33.333 0.00 0.00 0.00 1.98
2499 2784 9.167239 CAGTAAACTCGAAACGGTATTAGATAG 57.833 37.037 0.00 0.00 0.00 2.08
2500 2785 7.645340 GCAGTAAACTCGAAACGGTATTAGATA 59.355 37.037 0.00 0.00 0.00 1.98
2501 2786 6.474751 GCAGTAAACTCGAAACGGTATTAGAT 59.525 38.462 0.00 0.00 0.00 1.98
2502 2787 5.801947 GCAGTAAACTCGAAACGGTATTAGA 59.198 40.000 0.00 0.00 0.00 2.10
2503 2788 5.574055 TGCAGTAAACTCGAAACGGTATTAG 59.426 40.000 0.00 0.00 0.00 1.73
2504 2789 5.345741 GTGCAGTAAACTCGAAACGGTATTA 59.654 40.000 0.00 0.00 0.00 0.98
2505 2790 4.151157 GTGCAGTAAACTCGAAACGGTATT 59.849 41.667 0.00 0.00 0.00 1.89
2506 2791 3.676646 GTGCAGTAAACTCGAAACGGTAT 59.323 43.478 0.00 0.00 0.00 2.73
2507 2792 3.052036 GTGCAGTAAACTCGAAACGGTA 58.948 45.455 0.00 0.00 0.00 4.02
2508 2793 1.862827 GTGCAGTAAACTCGAAACGGT 59.137 47.619 0.00 0.00 0.00 4.83
2509 2794 1.136721 CGTGCAGTAAACTCGAAACGG 60.137 52.381 0.00 0.00 0.00 4.44
2510 2795 1.782569 TCGTGCAGTAAACTCGAAACG 59.217 47.619 0.00 0.00 30.93 3.60
2511 2796 3.847037 TTCGTGCAGTAAACTCGAAAC 57.153 42.857 3.88 0.00 39.29 2.78
2512 2797 3.805422 ACATTCGTGCAGTAAACTCGAAA 59.195 39.130 9.64 0.00 43.51 3.46
2513 2798 3.386486 ACATTCGTGCAGTAAACTCGAA 58.614 40.909 8.26 8.26 44.13 3.71
2514 2799 3.021269 ACATTCGTGCAGTAAACTCGA 57.979 42.857 0.00 0.00 0.00 4.04
2515 2800 3.059868 ACAACATTCGTGCAGTAAACTCG 60.060 43.478 0.00 0.00 0.00 4.18
2516 2801 4.211389 CACAACATTCGTGCAGTAAACTC 58.789 43.478 0.00 0.00 0.00 3.01
2517 2802 3.625764 ACACAACATTCGTGCAGTAAACT 59.374 39.130 0.00 0.00 37.93 2.66
2518 2803 3.723764 CACACAACATTCGTGCAGTAAAC 59.276 43.478 0.00 0.00 37.93 2.01
2519 2804 3.375610 ACACACAACATTCGTGCAGTAAA 59.624 39.130 0.00 0.00 37.93 2.01
2520 2805 2.939756 ACACACAACATTCGTGCAGTAA 59.060 40.909 0.00 0.00 37.93 2.24
2521 2806 2.556257 ACACACAACATTCGTGCAGTA 58.444 42.857 0.00 0.00 37.93 2.74
2522 2807 1.378531 ACACACAACATTCGTGCAGT 58.621 45.000 0.00 0.00 37.93 4.40
2523 2808 3.600717 TTACACACAACATTCGTGCAG 57.399 42.857 0.00 0.00 37.93 4.41
2524 2809 4.035675 TCAATTACACACAACATTCGTGCA 59.964 37.500 0.00 0.00 37.93 4.57
2525 2810 4.532276 TCAATTACACACAACATTCGTGC 58.468 39.130 0.00 0.00 37.93 5.34
2526 2811 8.626576 GTTAATCAATTACACACAACATTCGTG 58.373 33.333 0.00 0.00 40.32 4.35
2527 2812 8.564574 AGTTAATCAATTACACACAACATTCGT 58.435 29.630 0.00 0.00 0.00 3.85
2528 2813 8.839914 CAGTTAATCAATTACACACAACATTCG 58.160 33.333 0.00 0.00 0.00 3.34
2529 2814 9.128107 CCAGTTAATCAATTACACACAACATTC 57.872 33.333 0.00 0.00 0.00 2.67
2530 2815 8.637986 ACCAGTTAATCAATTACACACAACATT 58.362 29.630 0.00 0.00 0.00 2.71
2531 2816 8.177119 ACCAGTTAATCAATTACACACAACAT 57.823 30.769 0.00 0.00 0.00 2.71
2532 2817 7.575414 ACCAGTTAATCAATTACACACAACA 57.425 32.000 0.00 0.00 0.00 3.33
2533 2818 8.132362 TCAACCAGTTAATCAATTACACACAAC 58.868 33.333 0.00 0.00 0.00 3.32
2534 2819 8.226819 TCAACCAGTTAATCAATTACACACAA 57.773 30.769 0.00 0.00 0.00 3.33
2535 2820 7.809546 TCAACCAGTTAATCAATTACACACA 57.190 32.000 0.00 0.00 0.00 3.72
2536 2821 7.273381 GCATCAACCAGTTAATCAATTACACAC 59.727 37.037 0.00 0.00 0.00 3.82
2537 2822 7.040132 TGCATCAACCAGTTAATCAATTACACA 60.040 33.333 0.00 0.00 0.00 3.72
2538 2823 7.273381 GTGCATCAACCAGTTAATCAATTACAC 59.727 37.037 0.00 0.00 0.00 2.90
2539 2824 7.312154 GTGCATCAACCAGTTAATCAATTACA 58.688 34.615 0.00 0.00 0.00 2.41
2540 2825 6.468956 CGTGCATCAACCAGTTAATCAATTAC 59.531 38.462 0.00 0.00 0.00 1.89
2541 2826 6.372937 TCGTGCATCAACCAGTTAATCAATTA 59.627 34.615 0.00 0.00 0.00 1.40
2542 2827 5.182950 TCGTGCATCAACCAGTTAATCAATT 59.817 36.000 0.00 0.00 0.00 2.32
2543 2828 4.699735 TCGTGCATCAACCAGTTAATCAAT 59.300 37.500 0.00 0.00 0.00 2.57
2544 2829 4.068599 TCGTGCATCAACCAGTTAATCAA 58.931 39.130 0.00 0.00 0.00 2.57
2545 2830 3.669536 TCGTGCATCAACCAGTTAATCA 58.330 40.909 0.00 0.00 0.00 2.57
2546 2831 3.932710 TCTCGTGCATCAACCAGTTAATC 59.067 43.478 0.00 0.00 0.00 1.75
2547 2832 3.684788 GTCTCGTGCATCAACCAGTTAAT 59.315 43.478 0.00 0.00 0.00 1.40
2548 2833 3.064207 GTCTCGTGCATCAACCAGTTAA 58.936 45.455 0.00 0.00 0.00 2.01
2549 2834 2.683968 GTCTCGTGCATCAACCAGTTA 58.316 47.619 0.00 0.00 0.00 2.24
2550 2835 1.512926 GTCTCGTGCATCAACCAGTT 58.487 50.000 0.00 0.00 0.00 3.16
2551 2836 0.667487 CGTCTCGTGCATCAACCAGT 60.667 55.000 0.00 0.00 0.00 4.00
2552 2837 1.959899 GCGTCTCGTGCATCAACCAG 61.960 60.000 0.00 0.00 0.00 4.00
2553 2838 2.027073 GCGTCTCGTGCATCAACCA 61.027 57.895 0.00 0.00 0.00 3.67
2554 2839 1.738099 AGCGTCTCGTGCATCAACC 60.738 57.895 0.00 0.00 33.85 3.77
2555 2840 1.008875 TCAGCGTCTCGTGCATCAAC 61.009 55.000 0.00 0.00 33.85 3.18
2556 2841 0.733909 CTCAGCGTCTCGTGCATCAA 60.734 55.000 0.00 0.00 33.85 2.57
2557 2842 1.153958 CTCAGCGTCTCGTGCATCA 60.154 57.895 0.00 0.00 33.85 3.07
2558 2843 1.875813 CCTCAGCGTCTCGTGCATC 60.876 63.158 0.00 0.00 33.85 3.91
2559 2844 2.182791 CCTCAGCGTCTCGTGCAT 59.817 61.111 0.00 0.00 33.85 3.96
2560 2845 4.056125 CCCTCAGCGTCTCGTGCA 62.056 66.667 0.00 0.00 33.85 4.57
2579 2864 0.385473 AAATTAGCACGCACGCACAC 60.385 50.000 0.00 0.00 0.00 3.82
2580 2865 0.110419 GAAATTAGCACGCACGCACA 60.110 50.000 0.00 0.00 0.00 4.57
2581 2866 0.110419 TGAAATTAGCACGCACGCAC 60.110 50.000 0.00 0.00 0.00 5.34
2582 2867 0.588737 TTGAAATTAGCACGCACGCA 59.411 45.000 0.00 0.00 0.00 5.24
2583 2868 1.895051 ATTGAAATTAGCACGCACGC 58.105 45.000 0.00 0.00 0.00 5.34
2584 2869 3.487536 TCAATTGAAATTAGCACGCACG 58.512 40.909 5.45 0.00 0.00 5.34
2585 2870 4.722194 TCTCAATTGAAATTAGCACGCAC 58.278 39.130 9.88 0.00 0.00 5.34
2586 2871 5.369685 TTCTCAATTGAAATTAGCACGCA 57.630 34.783 9.88 0.00 0.00 5.24
2587 2872 6.749118 AGAATTCTCAATTGAAATTAGCACGC 59.251 34.615 19.51 11.53 0.00 5.34
2588 2873 7.253552 GCAGAATTCTCAATTGAAATTAGCACG 60.254 37.037 24.62 15.77 0.00 5.34
2589 2874 7.009907 GGCAGAATTCTCAATTGAAATTAGCAC 59.990 37.037 26.93 20.61 0.00 4.40
2590 2875 7.037438 GGCAGAATTCTCAATTGAAATTAGCA 58.963 34.615 26.93 9.24 0.00 3.49
2591 2876 7.263496 AGGCAGAATTCTCAATTGAAATTAGC 58.737 34.615 23.37 23.37 0.00 3.09
2592 2877 9.649167 AAAGGCAGAATTCTCAATTGAAATTAG 57.351 29.630 19.51 16.95 0.00 1.73
2594 2879 8.913487 AAAAGGCAGAATTCTCAATTGAAATT 57.087 26.923 19.55 19.55 0.00 1.82
2595 2880 7.330208 CGAAAAGGCAGAATTCTCAATTGAAAT 59.670 33.333 9.88 9.30 0.00 2.17
2596 2881 6.642131 CGAAAAGGCAGAATTCTCAATTGAAA 59.358 34.615 9.88 7.45 0.00 2.69
2597 2882 6.151691 CGAAAAGGCAGAATTCTCAATTGAA 58.848 36.000 9.88 0.00 0.00 2.69
2598 2883 5.241506 ACGAAAAGGCAGAATTCTCAATTGA 59.758 36.000 4.57 8.12 0.00 2.57
2599 2884 5.464168 ACGAAAAGGCAGAATTCTCAATTG 58.536 37.500 4.57 0.00 0.00 2.32
2600 2885 5.712152 ACGAAAAGGCAGAATTCTCAATT 57.288 34.783 4.57 0.00 0.00 2.32
2601 2886 8.682936 ATATACGAAAAGGCAGAATTCTCAAT 57.317 30.769 4.57 0.00 0.00 2.57
2602 2887 7.768582 TGATATACGAAAAGGCAGAATTCTCAA 59.231 33.333 4.57 0.00 0.00 3.02
2603 2888 7.224753 GTGATATACGAAAAGGCAGAATTCTCA 59.775 37.037 4.57 0.00 0.00 3.27
2604 2889 7.307455 GGTGATATACGAAAAGGCAGAATTCTC 60.307 40.741 4.57 0.75 0.00 2.87
2605 2890 6.483640 GGTGATATACGAAAAGGCAGAATTCT 59.516 38.462 0.88 0.88 0.00 2.40
2606 2891 6.293462 GGGTGATATACGAAAAGGCAGAATTC 60.293 42.308 0.00 0.00 0.00 2.17
2607 2892 5.531287 GGGTGATATACGAAAAGGCAGAATT 59.469 40.000 0.00 0.00 0.00 2.17
2608 2893 5.063880 GGGTGATATACGAAAAGGCAGAAT 58.936 41.667 0.00 0.00 0.00 2.40
2609 2894 4.080807 TGGGTGATATACGAAAAGGCAGAA 60.081 41.667 0.00 0.00 0.00 3.02
2610 2895 3.452990 TGGGTGATATACGAAAAGGCAGA 59.547 43.478 0.00 0.00 0.00 4.26
2611 2896 3.804036 TGGGTGATATACGAAAAGGCAG 58.196 45.455 0.00 0.00 0.00 4.85
2612 2897 3.916359 TGGGTGATATACGAAAAGGCA 57.084 42.857 0.00 0.00 0.00 4.75
2613 2898 4.385825 TGATGGGTGATATACGAAAAGGC 58.614 43.478 0.00 0.00 0.00 4.35
2614 2899 6.230472 TCATGATGGGTGATATACGAAAAGG 58.770 40.000 0.00 0.00 0.00 3.11
2615 2900 7.912056 ATCATGATGGGTGATATACGAAAAG 57.088 36.000 7.59 0.00 34.68 2.27
2616 2901 7.719193 ACAATCATGATGGGTGATATACGAAAA 59.281 33.333 14.72 0.00 35.35 2.29
2617 2902 7.223584 ACAATCATGATGGGTGATATACGAAA 58.776 34.615 14.72 0.00 35.35 3.46
2618 2903 6.768483 ACAATCATGATGGGTGATATACGAA 58.232 36.000 14.72 0.00 35.35 3.85
2619 2904 6.358974 ACAATCATGATGGGTGATATACGA 57.641 37.500 14.72 0.00 35.35 3.43
2620 2905 5.289434 CGACAATCATGATGGGTGATATACG 59.711 44.000 14.72 8.43 35.35 3.06
2621 2906 6.166279 ACGACAATCATGATGGGTGATATAC 58.834 40.000 14.72 1.14 35.35 1.47
2622 2907 6.358974 ACGACAATCATGATGGGTGATATA 57.641 37.500 14.72 0.00 35.35 0.86
2623 2908 5.233083 ACGACAATCATGATGGGTGATAT 57.767 39.130 14.72 0.00 35.35 1.63
2624 2909 4.687901 ACGACAATCATGATGGGTGATA 57.312 40.909 14.72 0.00 35.35 2.15
2625 2910 3.565764 ACGACAATCATGATGGGTGAT 57.434 42.857 14.72 2.18 37.91 3.06
2626 2911 3.009026 CAACGACAATCATGATGGGTGA 58.991 45.455 14.72 0.00 0.00 4.02
2627 2912 2.097954 CCAACGACAATCATGATGGGTG 59.902 50.000 14.72 9.41 0.00 4.61
2628 2913 2.368439 CCAACGACAATCATGATGGGT 58.632 47.619 14.72 13.16 0.00 4.51
2629 2914 1.677576 CCCAACGACAATCATGATGGG 59.322 52.381 14.72 13.64 0.00 4.00
2630 2915 2.368439 ACCCAACGACAATCATGATGG 58.632 47.619 9.46 9.03 0.00 3.51
2631 2916 5.513376 CATAACCCAACGACAATCATGATG 58.487 41.667 9.46 6.30 0.00 3.07
2632 2917 4.036734 GCATAACCCAACGACAATCATGAT 59.963 41.667 1.18 1.18 0.00 2.45
2633 2918 3.376859 GCATAACCCAACGACAATCATGA 59.623 43.478 0.00 0.00 0.00 3.07
2634 2919 3.489059 GGCATAACCCAACGACAATCATG 60.489 47.826 0.00 0.00 0.00 3.07
2635 2920 2.687935 GGCATAACCCAACGACAATCAT 59.312 45.455 0.00 0.00 0.00 2.45
2636 2921 2.088423 GGCATAACCCAACGACAATCA 58.912 47.619 0.00 0.00 0.00 2.57
2637 2922 1.063469 CGGCATAACCCAACGACAATC 59.937 52.381 0.00 0.00 33.26 2.67
2638 2923 1.091537 CGGCATAACCCAACGACAAT 58.908 50.000 0.00 0.00 33.26 2.71
2639 2924 1.579084 GCGGCATAACCCAACGACAA 61.579 55.000 0.00 0.00 33.26 3.18
2640 2925 2.036006 GCGGCATAACCCAACGACA 61.036 57.895 0.00 0.00 33.26 4.35
2641 2926 2.789249 GCGGCATAACCCAACGAC 59.211 61.111 0.00 0.00 33.26 4.34
2642 2927 2.816083 CGCGGCATAACCCAACGA 60.816 61.111 0.00 0.00 33.26 3.85
2643 2928 4.530325 GCGCGGCATAACCCAACG 62.530 66.667 8.83 0.00 33.26 4.10
2644 2929 2.696759 AAGCGCGGCATAACCCAAC 61.697 57.895 8.83 0.00 33.26 3.77
2645 2930 2.360600 AAGCGCGGCATAACCCAA 60.361 55.556 8.83 0.00 33.26 4.12
2646 2931 3.130819 CAAGCGCGGCATAACCCA 61.131 61.111 8.83 0.00 33.26 4.51
2647 2932 4.552745 GCAAGCGCGGCATAACCC 62.553 66.667 19.91 0.00 33.26 4.11
2648 2933 3.809775 TGCAAGCGCGGCATAACC 61.810 61.111 22.87 0.00 42.97 2.85
2653 2938 3.326889 GAAAGATGCAAGCGCGGCA 62.327 57.895 27.32 27.32 46.66 5.69
2654 2939 1.705337 TAGAAAGATGCAAGCGCGGC 61.705 55.000 18.37 18.37 42.97 6.53
2655 2940 0.026803 GTAGAAAGATGCAAGCGCGG 59.973 55.000 8.83 0.00 42.97 6.46
2656 2941 0.721154 TGTAGAAAGATGCAAGCGCG 59.279 50.000 0.00 0.00 42.97 6.86
2657 2942 1.527793 CGTGTAGAAAGATGCAAGCGC 60.528 52.381 0.00 0.00 39.24 5.92
2658 2943 1.992667 TCGTGTAGAAAGATGCAAGCG 59.007 47.619 0.00 0.00 0.00 4.68
2659 2944 3.242543 CCATCGTGTAGAAAGATGCAAGC 60.243 47.826 0.00 0.00 41.77 4.01
2660 2945 4.183865 TCCATCGTGTAGAAAGATGCAAG 58.816 43.478 0.00 0.00 41.77 4.01
2661 2946 4.081697 TCTCCATCGTGTAGAAAGATGCAA 60.082 41.667 0.00 0.00 41.77 4.08
2662 2947 3.447229 TCTCCATCGTGTAGAAAGATGCA 59.553 43.478 0.00 0.00 41.77 3.96
2663 2948 4.046938 TCTCCATCGTGTAGAAAGATGC 57.953 45.455 0.00 0.00 41.77 3.91
2664 2949 4.987285 CCATCTCCATCGTGTAGAAAGATG 59.013 45.833 0.00 0.00 42.49 2.90
2665 2950 4.895889 TCCATCTCCATCGTGTAGAAAGAT 59.104 41.667 0.00 0.00 31.21 2.40
2666 2951 4.278310 TCCATCTCCATCGTGTAGAAAGA 58.722 43.478 0.00 0.00 0.00 2.52
2667 2952 4.655762 TCCATCTCCATCGTGTAGAAAG 57.344 45.455 0.00 0.00 0.00 2.62
2668 2953 5.175859 GTTTCCATCTCCATCGTGTAGAAA 58.824 41.667 0.00 0.00 0.00 2.52
2669 2954 4.382685 GGTTTCCATCTCCATCGTGTAGAA 60.383 45.833 0.00 0.00 0.00 2.10
2670 2955 3.132289 GGTTTCCATCTCCATCGTGTAGA 59.868 47.826 0.00 0.00 0.00 2.59
2671 2956 3.118775 TGGTTTCCATCTCCATCGTGTAG 60.119 47.826 0.00 0.00 0.00 2.74
2672 2957 2.835156 TGGTTTCCATCTCCATCGTGTA 59.165 45.455 0.00 0.00 0.00 2.90
2673 2958 1.628340 TGGTTTCCATCTCCATCGTGT 59.372 47.619 0.00 0.00 0.00 4.49
2674 2959 2.283298 CTGGTTTCCATCTCCATCGTG 58.717 52.381 0.00 0.00 30.82 4.35
2675 2960 1.210478 CCTGGTTTCCATCTCCATCGT 59.790 52.381 0.00 0.00 30.82 3.73
2676 2961 1.486310 TCCTGGTTTCCATCTCCATCG 59.514 52.381 0.00 0.00 30.82 3.84
2677 2962 3.652057 TTCCTGGTTTCCATCTCCATC 57.348 47.619 0.00 0.00 30.82 3.51
2678 2963 4.044571 TCTTTTCCTGGTTTCCATCTCCAT 59.955 41.667 0.00 0.00 30.82 3.41
2679 2964 3.397618 TCTTTTCCTGGTTTCCATCTCCA 59.602 43.478 0.00 0.00 30.82 3.86
2680 2965 4.013050 CTCTTTTCCTGGTTTCCATCTCC 58.987 47.826 0.00 0.00 30.82 3.71
2681 2966 4.911390 TCTCTTTTCCTGGTTTCCATCTC 58.089 43.478 0.00 0.00 30.82 2.75
2682 2967 5.222213 ACATCTCTTTTCCTGGTTTCCATCT 60.222 40.000 0.00 0.00 30.82 2.90
2683 2968 5.012893 ACATCTCTTTTCCTGGTTTCCATC 58.987 41.667 0.00 0.00 30.82 3.51
2684 2969 4.768968 CACATCTCTTTTCCTGGTTTCCAT 59.231 41.667 0.00 0.00 30.82 3.41
2685 2970 4.144297 CACATCTCTTTTCCTGGTTTCCA 58.856 43.478 0.00 0.00 0.00 3.53
2686 2971 3.057245 GCACATCTCTTTTCCTGGTTTCC 60.057 47.826 0.00 0.00 0.00 3.13
2687 2972 3.057245 GGCACATCTCTTTTCCTGGTTTC 60.057 47.826 0.00 0.00 0.00 2.78
2688 2973 2.893489 GGCACATCTCTTTTCCTGGTTT 59.107 45.455 0.00 0.00 0.00 3.27
2689 2974 2.519013 GGCACATCTCTTTTCCTGGTT 58.481 47.619 0.00 0.00 0.00 3.67
2690 2975 1.611673 CGGCACATCTCTTTTCCTGGT 60.612 52.381 0.00 0.00 0.00 4.00
2691 2976 1.089920 CGGCACATCTCTTTTCCTGG 58.910 55.000 0.00 0.00 0.00 4.45
2692 2977 1.089920 CCGGCACATCTCTTTTCCTG 58.910 55.000 0.00 0.00 0.00 3.86
2693 2978 0.693049 ACCGGCACATCTCTTTTCCT 59.307 50.000 0.00 0.00 0.00 3.36
2694 2979 0.804989 CACCGGCACATCTCTTTTCC 59.195 55.000 0.00 0.00 0.00 3.13
2695 2980 0.169009 GCACCGGCACATCTCTTTTC 59.831 55.000 0.00 0.00 40.72 2.29
2696 2981 1.244019 GGCACCGGCACATCTCTTTT 61.244 55.000 0.00 0.00 43.71 2.27
2697 2982 1.675641 GGCACCGGCACATCTCTTT 60.676 57.895 0.00 0.00 43.71 2.52
2698 2983 2.045926 GGCACCGGCACATCTCTT 60.046 61.111 0.00 0.00 43.71 2.85
2699 2984 4.457496 CGGCACCGGCACATCTCT 62.457 66.667 0.00 0.00 43.71 3.10
2709 2994 3.576356 CATTGCTAGCCGGCACCG 61.576 66.667 31.54 17.18 42.27 4.94
2710 2995 3.211963 CCATTGCTAGCCGGCACC 61.212 66.667 31.54 16.58 42.27 5.01
2711 2996 2.438434 ACCATTGCTAGCCGGCAC 60.438 61.111 31.54 18.33 42.27 5.01
2712 2997 2.438254 CACCATTGCTAGCCGGCA 60.438 61.111 31.54 14.00 40.74 5.69
2713 2998 3.211963 CCACCATTGCTAGCCGGC 61.212 66.667 21.89 21.89 0.00 6.13
2714 2999 2.324014 TAGCCACCATTGCTAGCCGG 62.324 60.000 13.29 12.62 40.23 6.13
2715 3000 0.463654 TTAGCCACCATTGCTAGCCG 60.464 55.000 13.29 0.13 41.94 5.52
2716 3001 1.312815 CTTAGCCACCATTGCTAGCC 58.687 55.000 13.29 0.00 41.94 3.93
2717 3002 0.665298 GCTTAGCCACCATTGCTAGC 59.335 55.000 8.10 8.10 41.94 3.42
2718 3003 2.338577 AGCTTAGCCACCATTGCTAG 57.661 50.000 0.00 0.00 41.94 3.42
2719 3004 2.104792 CCTAGCTTAGCCACCATTGCTA 59.895 50.000 0.00 0.00 40.23 3.49
2720 3005 1.133976 CCTAGCTTAGCCACCATTGCT 60.134 52.381 0.00 0.00 42.81 3.91
2721 3006 1.312815 CCTAGCTTAGCCACCATTGC 58.687 55.000 0.00 0.00 0.00 3.56
2722 3007 1.312815 GCCTAGCTTAGCCACCATTG 58.687 55.000 0.00 0.00 0.00 2.82
2723 3008 3.808984 GCCTAGCTTAGCCACCATT 57.191 52.632 0.00 0.00 0.00 3.16
2755 3040 2.170166 CTTATGCACACCAACATGGGT 58.830 47.619 0.00 0.00 43.37 4.51
2756 3041 1.477700 CCTTATGCACACCAACATGGG 59.522 52.381 0.00 0.00 43.37 4.00
2757 3042 1.477700 CCCTTATGCACACCAACATGG 59.522 52.381 0.00 0.00 45.02 3.66
2758 3043 1.135024 GCCCTTATGCACACCAACATG 60.135 52.381 0.00 0.00 0.00 3.21
2759 3044 1.185315 GCCCTTATGCACACCAACAT 58.815 50.000 0.00 0.00 0.00 2.71
2760 3045 0.178978 TGCCCTTATGCACACCAACA 60.179 50.000 0.00 0.00 36.04 3.33
2761 3046 1.134946 GATGCCCTTATGCACACCAAC 59.865 52.381 0.00 0.00 45.48 3.77
2762 3047 1.005805 AGATGCCCTTATGCACACCAA 59.994 47.619 0.00 0.00 45.48 3.67
2763 3048 0.625316 AGATGCCCTTATGCACACCA 59.375 50.000 0.00 0.00 45.48 4.17
2764 3049 1.678101 GAAGATGCCCTTATGCACACC 59.322 52.381 0.00 0.00 45.48 4.16
2765 3050 2.357009 CTGAAGATGCCCTTATGCACAC 59.643 50.000 0.00 0.00 45.48 3.82
2766 3051 2.025981 ACTGAAGATGCCCTTATGCACA 60.026 45.455 0.00 0.00 45.48 4.57
2767 3052 2.615912 GACTGAAGATGCCCTTATGCAC 59.384 50.000 0.00 0.00 45.48 4.57
2768 3053 2.742856 CGACTGAAGATGCCCTTATGCA 60.743 50.000 0.00 0.00 46.94 3.96
2769 3054 1.869767 CGACTGAAGATGCCCTTATGC 59.130 52.381 0.00 0.00 34.68 3.14
2770 3055 3.185246 ACGACTGAAGATGCCCTTATG 57.815 47.619 0.00 0.00 34.68 1.90
2771 3056 3.535561 CAACGACTGAAGATGCCCTTAT 58.464 45.455 0.00 0.00 34.68 1.73
2772 3057 2.354704 CCAACGACTGAAGATGCCCTTA 60.355 50.000 0.00 0.00 34.68 2.69
2773 3058 1.611673 CCAACGACTGAAGATGCCCTT 60.612 52.381 0.00 0.00 37.93 3.95
2774 3059 0.036010 CCAACGACTGAAGATGCCCT 60.036 55.000 0.00 0.00 0.00 5.19
2775 3060 0.321653 ACCAACGACTGAAGATGCCC 60.322 55.000 0.00 0.00 0.00 5.36
2776 3061 1.523758 AACCAACGACTGAAGATGCC 58.476 50.000 0.00 0.00 0.00 4.40
2777 3062 3.626028 AAAACCAACGACTGAAGATGC 57.374 42.857 0.00 0.00 0.00 3.91
2810 3095 0.898326 GCGTCCCAGGGGTGATTTTT 60.898 55.000 5.33 0.00 36.47 1.94
2811 3096 1.304134 GCGTCCCAGGGGTGATTTT 60.304 57.895 5.33 0.00 36.47 1.82
2812 3097 2.355115 GCGTCCCAGGGGTGATTT 59.645 61.111 5.33 0.00 36.47 2.17
2813 3098 2.933287 TGCGTCCCAGGGGTGATT 60.933 61.111 5.33 0.00 36.47 2.57
2814 3099 3.717294 GTGCGTCCCAGGGGTGAT 61.717 66.667 5.33 0.00 36.47 3.06
2836 3121 2.740714 CCTCAGTGCGCGGTTTAGC 61.741 63.158 8.83 0.00 0.00 3.09
2837 3122 1.080093 TCCTCAGTGCGCGGTTTAG 60.080 57.895 8.83 0.00 0.00 1.85
2838 3123 1.373748 GTCCTCAGTGCGCGGTTTA 60.374 57.895 8.83 0.00 0.00 2.01
2839 3124 2.665185 GTCCTCAGTGCGCGGTTT 60.665 61.111 8.83 0.00 0.00 3.27
2843 3128 3.971453 ATCACGTCCTCAGTGCGCG 62.971 63.158 0.00 0.00 39.31 6.86
2844 3129 2.125912 ATCACGTCCTCAGTGCGC 60.126 61.111 0.00 0.00 39.31 6.09
2845 3130 2.447887 GCATCACGTCCTCAGTGCG 61.448 63.158 0.00 0.00 39.31 5.34
2846 3131 2.103042 GGCATCACGTCCTCAGTGC 61.103 63.158 0.00 0.00 39.31 4.40
2847 3132 1.448540 GGGCATCACGTCCTCAGTG 60.449 63.158 0.00 0.00 35.97 3.66
2848 3133 2.660064 GGGGCATCACGTCCTCAGT 61.660 63.158 0.00 0.00 40.36 3.41
2849 3134 2.187946 GGGGCATCACGTCCTCAG 59.812 66.667 0.00 0.00 40.36 3.35
2850 3135 3.399181 GGGGGCATCACGTCCTCA 61.399 66.667 0.00 0.00 40.97 3.86
2864 3149 4.410400 GAAGGCCACGACTGGGGG 62.410 72.222 5.01 0.00 38.13 5.40
2865 3150 4.410400 GGAAGGCCACGACTGGGG 62.410 72.222 5.01 0.00 38.13 4.96
2866 3151 3.636231 TGGAAGGCCACGACTGGG 61.636 66.667 5.01 0.00 39.92 4.45
2874 3159 2.588464 TAAAAATCCGTGGAAGGCCA 57.412 45.000 5.01 0.00 43.47 5.36
2875 3160 3.945981 TTTAAAAATCCGTGGAAGGCC 57.054 42.857 0.00 0.00 0.00 5.19
2876 3161 5.778161 CATTTTAAAAATCCGTGGAAGGC 57.222 39.130 4.44 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.