Multiple sequence alignment - TraesCS5A01G371200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G371200 chr5A 100.000 4998 0 0 1 4998 570189643 570194640 0.000000e+00 9230
1 TraesCS5A01G371200 chr5A 87.392 928 91 23 4085 4998 83352713 83351798 0.000000e+00 1042
2 TraesCS5A01G371200 chr3B 91.667 2760 181 21 1 2718 232602349 232599597 0.000000e+00 3777
3 TraesCS5A01G371200 chr3B 89.127 607 59 5 2713 3318 232594326 232593726 0.000000e+00 749
4 TraesCS5A01G371200 chr3B 84.877 529 49 12 3310 3835 232593706 232593206 5.770000e-139 505
5 TraesCS5A01G371200 chr7D 79.460 1889 352 30 1414 3281 86063878 86065751 0.000000e+00 1306
6 TraesCS5A01G371200 chr7A 78.481 1896 363 34 1414 3281 675503875 675501997 0.000000e+00 1199
7 TraesCS5A01G371200 chr7A 89.468 921 82 11 4085 4998 76649295 76648383 0.000000e+00 1149
8 TraesCS5A01G371200 chr7A 89.229 882 79 10 4085 4958 76612548 76611675 0.000000e+00 1088
9 TraesCS5A01G371200 chr2B 78.272 1887 364 32 1416 3279 259695117 259693254 0.000000e+00 1171
10 TraesCS5A01G371200 chr4A 88.026 927 89 17 4085 4998 19785983 19785066 0.000000e+00 1077
11 TraesCS5A01G371200 chr4A 86.825 926 100 19 4086 4998 601079286 601080202 0.000000e+00 1014
12 TraesCS5A01G371200 chr3A 86.659 922 100 20 4083 4998 395727185 395726281 0.000000e+00 1000
13 TraesCS5A01G371200 chr3A 85.745 933 102 28 4084 4998 282276317 282275398 0.000000e+00 957
14 TraesCS5A01G371200 chr3A 83.532 923 118 26 4085 4994 30707305 30706404 0.000000e+00 832
15 TraesCS5A01G371200 chr5B 83.983 924 113 30 4085 4998 438711333 438710435 0.000000e+00 854


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G371200 chr5A 570189643 570194640 4997 False 9230 9230 100.000 1 4998 1 chr5A.!!$F1 4997
1 TraesCS5A01G371200 chr5A 83351798 83352713 915 True 1042 1042 87.392 4085 4998 1 chr5A.!!$R1 913
2 TraesCS5A01G371200 chr3B 232599597 232602349 2752 True 3777 3777 91.667 1 2718 1 chr3B.!!$R1 2717
3 TraesCS5A01G371200 chr3B 232593206 232594326 1120 True 627 749 87.002 2713 3835 2 chr3B.!!$R2 1122
4 TraesCS5A01G371200 chr7D 86063878 86065751 1873 False 1306 1306 79.460 1414 3281 1 chr7D.!!$F1 1867
5 TraesCS5A01G371200 chr7A 675501997 675503875 1878 True 1199 1199 78.481 1414 3281 1 chr7A.!!$R3 1867
6 TraesCS5A01G371200 chr7A 76648383 76649295 912 True 1149 1149 89.468 4085 4998 1 chr7A.!!$R2 913
7 TraesCS5A01G371200 chr7A 76611675 76612548 873 True 1088 1088 89.229 4085 4958 1 chr7A.!!$R1 873
8 TraesCS5A01G371200 chr2B 259693254 259695117 1863 True 1171 1171 78.272 1416 3279 1 chr2B.!!$R1 1863
9 TraesCS5A01G371200 chr4A 19785066 19785983 917 True 1077 1077 88.026 4085 4998 1 chr4A.!!$R1 913
10 TraesCS5A01G371200 chr4A 601079286 601080202 916 False 1014 1014 86.825 4086 4998 1 chr4A.!!$F1 912
11 TraesCS5A01G371200 chr3A 395726281 395727185 904 True 1000 1000 86.659 4083 4998 1 chr3A.!!$R3 915
12 TraesCS5A01G371200 chr3A 282275398 282276317 919 True 957 957 85.745 4084 4998 1 chr3A.!!$R2 914
13 TraesCS5A01G371200 chr3A 30706404 30707305 901 True 832 832 83.532 4085 4994 1 chr3A.!!$R1 909
14 TraesCS5A01G371200 chr5B 438710435 438711333 898 True 854 854 83.983 4085 4998 1 chr5B.!!$R1 913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 573 0.036732 TGTCTTCCATGGTCAGGTGC 59.963 55.0 12.58 4.7 0.00 5.01 F
961 964 0.463654 CCCTTGCGCTATACCTGCAA 60.464 55.0 9.73 0.0 45.54 4.08 F
1707 1741 0.883153 GTGTGCCATTGTGCAGATCA 59.117 50.0 0.00 0.0 43.02 2.92 F
2818 2904 0.814010 AGGTCGCCGGTAATCAATGC 60.814 55.0 1.90 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2127 0.036294 GCCTTCCCTGTTCGCTAAGT 60.036 55.000 0.00 0.0 0.00 2.24 R
2765 2850 1.067354 GCCTGCAGGGAACAATCAAAG 60.067 52.381 33.46 4.1 37.23 2.77 R
3136 3223 0.099436 CCGTTTAGCATCTGCCTTGC 59.901 55.000 0.00 0.0 43.38 4.01 R
4386 4523 0.037232 GAGTTGGAGTTGGAGTCGGG 60.037 60.000 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.941463 CATAGCCATGCTCGACCGAC 60.941 60.000 0.00 0.00 40.44 4.79
49 50 0.953727 GTTGGCTGCATGAAGTGACA 59.046 50.000 1.73 0.00 0.00 3.58
98 99 4.831674 TCTTCACACTGGACATGATGAT 57.168 40.909 0.00 0.00 0.00 2.45
99 100 4.510571 TCTTCACACTGGACATGATGATG 58.489 43.478 0.00 0.00 35.49 3.07
100 101 2.635714 TCACACTGGACATGATGATGC 58.364 47.619 0.00 0.00 32.14 3.91
109 110 2.858344 GACATGATGATGCTGCTTTTGC 59.142 45.455 0.00 0.00 38.41 3.68
160 161 1.665679 GATGTATGCACAGGTCCAACG 59.334 52.381 0.00 0.00 38.30 4.10
224 225 2.677848 GGAGGGGTGGAGAAAGCC 59.322 66.667 0.00 0.00 36.97 4.35
226 227 1.301293 GAGGGGTGGAGAAAGCCTG 59.699 63.158 0.00 0.00 37.86 4.85
230 231 0.253327 GGGTGGAGAAAGCCTGGTAG 59.747 60.000 0.00 0.00 34.75 3.18
254 255 2.645510 CGTCGCGTGTGTGTTCCTC 61.646 63.158 5.77 0.00 0.00 3.71
255 256 1.590525 GTCGCGTGTGTGTTCCTCA 60.591 57.895 5.77 0.00 0.00 3.86
292 294 1.678970 GAACTCCACCCCCATGTGC 60.679 63.158 0.00 0.00 34.85 4.57
300 302 4.387343 CCCCATGTGCCCCTGCTT 62.387 66.667 0.00 0.00 38.71 3.91
318 320 6.457257 CCCTGCTTGTTTGAATTTTGAACTTG 60.457 38.462 0.00 0.00 0.00 3.16
376 378 1.113517 ATATACAGGTGGCGCGGAGT 61.114 55.000 8.83 0.00 0.00 3.85
391 393 2.821546 CGGAGTAGCGAAAATCCATCA 58.178 47.619 5.05 0.00 0.00 3.07
400 402 4.764823 AGCGAAAATCCATCAAAACCAGTA 59.235 37.500 0.00 0.00 0.00 2.74
449 451 1.748403 AGCTTCAGTGCTGACCGAA 59.252 52.632 0.79 0.00 42.33 4.30
457 459 2.811317 GCTGACCGAAGCGTCCAG 60.811 66.667 0.00 0.00 32.56 3.86
468 470 3.051210 CGTCCAGCTCCACACTGA 58.949 61.111 0.00 0.00 37.32 3.41
493 495 3.453559 GCGGTGTGCAGGTTAGTAT 57.546 52.632 0.00 0.00 45.45 2.12
525 527 1.256812 ACTAACCATGGCAAGCAACC 58.743 50.000 13.04 0.00 0.00 3.77
539 541 1.200716 AGCAACCGATCTTGTGCAATG 59.799 47.619 12.19 0.00 0.00 2.82
563 565 5.634859 GCACTTACAAAATTGTCTTCCATGG 59.365 40.000 4.97 4.97 42.35 3.66
564 566 6.738453 GCACTTACAAAATTGTCTTCCATGGT 60.738 38.462 12.58 0.00 42.35 3.55
567 569 5.458041 ACAAAATTGTCTTCCATGGTCAG 57.542 39.130 12.58 9.43 36.50 3.51
571 573 0.036732 TGTCTTCCATGGTCAGGTGC 59.963 55.000 12.58 4.70 0.00 5.01
581 583 1.278985 TGGTCAGGTGCTTAGTGATGG 59.721 52.381 0.00 0.00 0.00 3.51
615 617 1.641577 GTCTCGTTTTCCCTGATCCG 58.358 55.000 0.00 0.00 0.00 4.18
617 619 1.621814 TCTCGTTTTCCCTGATCCGTT 59.378 47.619 0.00 0.00 0.00 4.44
621 623 2.779506 GTTTTCCCTGATCCGTTGTCT 58.220 47.619 0.00 0.00 0.00 3.41
651 653 1.216710 CCTTGCTGACGAGGTCTCC 59.783 63.158 0.00 0.00 42.03 3.71
662 664 2.022195 CGAGGTCTCCGATCTTTACCA 58.978 52.381 0.00 0.00 32.43 3.25
687 689 9.910511 CAAGTTTTGATTTGTTTTTCATCAGAG 57.089 29.630 0.00 0.00 0.00 3.35
696 698 1.442769 TTTCATCAGAGCGCCTTGTC 58.557 50.000 2.29 0.00 0.00 3.18
703 705 0.528470 AGAGCGCCTTGTCTGACTAC 59.472 55.000 2.29 0.00 0.00 2.73
763 765 0.736325 CACAAGGACCGGTGATCGAC 60.736 60.000 14.63 0.00 42.43 4.20
778 780 1.179152 TCGACACGGAGATTGCCTTA 58.821 50.000 0.00 0.00 0.00 2.69
810 812 4.376450 CAGTCGCTACTGTGAGTTTTTC 57.624 45.455 10.13 0.00 46.76 2.29
823 825 4.327898 GTGAGTTTTTCCCGGTTTTTGAAC 59.672 41.667 0.00 0.00 0.00 3.18
865 867 6.638096 TGCATGTGATCTAATTTATGGTGG 57.362 37.500 0.00 0.00 0.00 4.61
903 905 1.019278 GTTGATCATGCCGTGGACGT 61.019 55.000 0.00 0.00 37.74 4.34
931 934 2.338809 TGGTGGTTGGAGAAGAGACAT 58.661 47.619 0.00 0.00 0.00 3.06
950 953 0.881118 TCAGATTTTGACCCTTGCGC 59.119 50.000 0.00 0.00 0.00 6.09
952 955 2.083774 CAGATTTTGACCCTTGCGCTA 58.916 47.619 9.73 0.00 0.00 4.26
960 963 1.146041 CCCTTGCGCTATACCTGCA 59.854 57.895 9.73 0.00 36.72 4.41
961 964 0.463654 CCCTTGCGCTATACCTGCAA 60.464 55.000 9.73 0.00 45.54 4.08
988 991 0.956902 TGATGCATGCGAGCTGTTGT 60.957 50.000 14.09 0.00 34.99 3.32
989 992 1.009078 GATGCATGCGAGCTGTTGTA 58.991 50.000 14.09 0.00 34.99 2.41
990 993 1.004185 GATGCATGCGAGCTGTTGTAG 60.004 52.381 14.09 0.00 34.99 2.74
1018 1021 0.973632 AATGTCGGTGACAGGTGCTA 59.026 50.000 5.80 0.00 46.04 3.49
1025 1028 1.618837 GGTGACAGGTGCTAGTGAAGA 59.381 52.381 0.00 0.00 0.00 2.87
1041 1044 2.768527 TGAAGATGGGAGCGAAGAAGAT 59.231 45.455 0.00 0.00 0.00 2.40
1047 1050 1.473965 GGGAGCGAAGAAGATGATGCA 60.474 52.381 0.00 0.00 0.00 3.96
1055 1058 1.417145 AGAAGATGATGCAGAGAGCCC 59.583 52.381 0.00 0.00 44.83 5.19
1056 1059 1.417145 GAAGATGATGCAGAGAGCCCT 59.583 52.381 0.00 0.00 44.83 5.19
1090 1093 6.458206 GCGTGCTAGAATATGAAAATTCCACA 60.458 38.462 0.00 0.00 36.68 4.17
1168 1171 3.254657 GCTGATATGTAAGCGGAGTCTCT 59.745 47.826 0.00 0.00 0.00 3.10
1192 1195 9.120538 TCTCTAAATAATGGAAGTATTTGGCAC 57.879 33.333 3.63 0.00 45.45 5.01
1203 1206 3.987220 AGTATTTGGCACGTGCATTTTTC 59.013 39.130 38.60 23.82 44.36 2.29
1204 1207 1.576356 TTTGGCACGTGCATTTTTCC 58.424 45.000 38.60 21.40 44.36 3.13
1214 1217 2.719046 GTGCATTTTTCCGTGTTTCGAG 59.281 45.455 0.00 0.00 42.86 4.04
1221 1224 5.987777 TTTTCCGTGTTTCGAGTGAATTA 57.012 34.783 0.00 0.00 42.86 1.40
1222 1225 4.977741 TTCCGTGTTTCGAGTGAATTAC 57.022 40.909 0.00 0.00 42.86 1.89
1235 1238 1.208535 TGAATTACCTGGCCGTTCGAT 59.791 47.619 0.00 0.00 0.00 3.59
1400 1404 2.680339 GCTGGGAGCTTAGTTGAATCAC 59.320 50.000 0.00 0.00 38.45 3.06
1407 1411 6.039616 GGAGCTTAGTTGAATCACACTAGAG 58.960 44.000 0.00 0.00 0.00 2.43
1408 1412 5.415221 AGCTTAGTTGAATCACACTAGAGC 58.585 41.667 17.95 17.95 0.00 4.09
1409 1413 5.047021 AGCTTAGTTGAATCACACTAGAGCA 60.047 40.000 21.91 7.62 30.85 4.26
1410 1414 5.639506 GCTTAGTTGAATCACACTAGAGCAA 59.360 40.000 19.10 0.00 0.00 3.91
1411 1415 6.183360 GCTTAGTTGAATCACACTAGAGCAAG 60.183 42.308 19.10 12.23 0.00 4.01
1412 1416 5.474578 AGTTGAATCACACTAGAGCAAGA 57.525 39.130 0.00 0.00 0.00 3.02
1511 1536 1.000607 AGTACCGGCGCATGTGTATAG 60.001 52.381 10.83 0.00 0.00 1.31
1514 1539 1.134640 ACCGGCGCATGTGTATAGAAA 60.135 47.619 10.83 0.00 0.00 2.52
1515 1540 1.260561 CCGGCGCATGTGTATAGAAAC 59.739 52.381 10.83 0.00 0.00 2.78
1526 1551 3.451178 GTGTATAGAAACAGCTCCCTGGA 59.549 47.826 0.00 0.00 43.53 3.86
1530 1555 2.804828 GAAACAGCTCCCTGGACCGG 62.805 65.000 0.00 0.00 43.53 5.28
1545 1570 4.020617 CGGAGCCTCCCAGCACAA 62.021 66.667 4.85 0.00 31.13 3.33
1562 1587 3.836949 CACAAAGAACAAGCACAACTGT 58.163 40.909 0.00 0.00 0.00 3.55
1582 1615 1.575447 ATCTGGGGCTTGGGGAGAAC 61.575 60.000 0.00 0.00 0.00 3.01
1642 1675 3.650139 TCTCGGTTTTCTTCTTCCTTCG 58.350 45.455 0.00 0.00 0.00 3.79
1707 1741 0.883153 GTGTGCCATTGTGCAGATCA 59.117 50.000 0.00 0.00 43.02 2.92
1746 1780 2.922503 TCCAAGCTGTCCTCGCCA 60.923 61.111 0.00 0.00 0.00 5.69
1854 1888 2.247437 GCATTCCATCGCCGGAGAC 61.247 63.158 11.10 0.00 36.12 3.36
1903 1937 1.682257 GGGATAGGCATGGAGGAGC 59.318 63.158 0.00 0.00 0.00 4.70
2014 2048 1.492599 TGGGCGATGGGAATCATGTTA 59.507 47.619 0.00 0.00 35.97 2.41
2024 2058 8.567104 CGATGGGAATCATGTTATTGTCAATTA 58.433 33.333 2.79 0.00 35.97 1.40
2110 2144 3.683340 GGTTTACTTAGCGAACAGGGAAG 59.317 47.826 0.00 0.00 0.00 3.46
2247 2281 5.664908 AGGAGCAGAAAAGGAGAAGATGATA 59.335 40.000 0.00 0.00 0.00 2.15
2253 2287 5.190528 AGAAAAGGAGAAGATGATAGTGGCA 59.809 40.000 0.00 0.00 0.00 4.92
2320 2354 3.117738 ACACCCCAAAATTGCCAATGAAA 60.118 39.130 0.00 0.00 0.00 2.69
2322 2356 4.156373 CACCCCAAAATTGCCAATGAAATC 59.844 41.667 0.00 0.00 0.00 2.17
2485 2519 3.274288 GTCATCCCTCAGGTTAGCAAAG 58.726 50.000 0.00 0.00 0.00 2.77
2511 2547 5.635700 GCTACCGGTTCAATATTTGCAAAAA 59.364 36.000 15.04 2.27 0.00 1.94
2536 2617 2.793278 GGGTGTTTTCTCACGCATTT 57.207 45.000 8.56 0.00 45.98 2.32
2719 2803 4.034510 GCTGGATTTGAGGTACATTTCTCG 59.965 45.833 0.00 0.00 33.00 4.04
2765 2850 3.815401 ACAGTGTGGTTGCTAAGATTCAC 59.185 43.478 0.00 0.00 0.00 3.18
2818 2904 0.814010 AGGTCGCCGGTAATCAATGC 60.814 55.000 1.90 0.00 0.00 3.56
2895 2981 3.737850 CATGCTCCTCCTACTGGATTTC 58.262 50.000 0.00 0.00 42.29 2.17
2933 3019 4.200874 CAGAGATACCACGAGAGGTTAGT 58.799 47.826 4.46 0.00 43.08 2.24
2960 3047 4.335315 TGAAATTTGTTCGCTTGTGAGACT 59.665 37.500 0.00 0.00 0.00 3.24
2963 3050 4.316205 TTTGTTCGCTTGTGAGACTAGA 57.684 40.909 0.00 0.00 0.00 2.43
2969 3056 2.602211 CGCTTGTGAGACTAGATGCAAG 59.398 50.000 0.00 5.04 37.12 4.01
2979 3066 4.040952 AGACTAGATGCAAGTTTGTCCTGT 59.959 41.667 0.00 0.00 0.00 4.00
3012 3099 8.910351 ACTAATTTAGTTGTCTTCTTCTTGCT 57.090 30.769 3.16 0.00 34.86 3.91
3013 3100 9.998106 ACTAATTTAGTTGTCTTCTTCTTGCTA 57.002 29.630 3.16 0.00 34.86 3.49
3041 3128 2.352960 GTCCCAGATTCTTGATGCGTTC 59.647 50.000 0.00 0.00 0.00 3.95
3061 3148 1.203441 AAGGAGGCAGTGGAGCATCA 61.203 55.000 3.02 0.00 46.34 3.07
3098 3185 5.104402 TGAGCAGGAATTCATGAAGATGGTA 60.104 40.000 23.47 0.00 0.00 3.25
3136 3223 7.041508 AGTCAAAGTGCTTGTAGAAATCAAGAG 60.042 37.037 9.40 0.00 43.17 2.85
3143 3230 4.019792 TGTAGAAATCAAGAGCAAGGCA 57.980 40.909 0.00 0.00 0.00 4.75
3166 3253 1.019805 GCTAAACGGCACAGAGACCC 61.020 60.000 0.00 0.00 0.00 4.46
3281 3368 5.461327 CCCAGGGTAAGTACAGGTAATCTA 58.539 45.833 0.00 0.00 0.00 1.98
3288 3375 7.069085 GGGTAAGTACAGGTAATCTATGTCACA 59.931 40.741 0.00 0.00 0.00 3.58
3290 3377 7.956328 AAGTACAGGTAATCTATGTCACAGA 57.044 36.000 0.00 0.00 0.00 3.41
3291 3378 8.540507 AAGTACAGGTAATCTATGTCACAGAT 57.459 34.615 0.00 0.00 34.15 2.90
3292 3379 8.172352 AGTACAGGTAATCTATGTCACAGATC 57.828 38.462 0.00 0.00 31.45 2.75
3296 3383 6.927936 CAGGTAATCTATGTCACAGATCCAAG 59.072 42.308 0.00 0.00 31.45 3.61
3337 3453 4.568072 TGCTGGTATGGTAATGAGTTGT 57.432 40.909 0.00 0.00 0.00 3.32
3346 3462 3.249799 TGGTAATGAGTTGTTGTCGCTTG 59.750 43.478 0.00 0.00 0.00 4.01
3347 3463 3.364964 GGTAATGAGTTGTTGTCGCTTGG 60.365 47.826 0.00 0.00 0.00 3.61
3348 3464 2.254546 ATGAGTTGTTGTCGCTTGGA 57.745 45.000 0.00 0.00 0.00 3.53
3353 3469 1.444119 TTGTTGTCGCTTGGAGGTGC 61.444 55.000 0.00 0.00 0.00 5.01
3356 3472 0.394938 TTGTCGCTTGGAGGTGCTAA 59.605 50.000 0.00 0.00 0.00 3.09
3375 3493 1.878953 AGCCACTTCCTGTTTACGTG 58.121 50.000 0.00 0.00 0.00 4.49
3443 3561 1.978617 CCTGCCGTGCTTGGGAAAT 60.979 57.895 0.00 0.00 0.00 2.17
3444 3562 0.679640 CCTGCCGTGCTTGGGAAATA 60.680 55.000 0.00 0.00 0.00 1.40
3445 3563 0.734889 CTGCCGTGCTTGGGAAATAG 59.265 55.000 0.00 0.00 0.00 1.73
3454 3572 2.711542 CTTGGGAAATAGAACAGCGGT 58.288 47.619 0.00 0.00 0.00 5.68
3458 3576 1.659098 GGAAATAGAACAGCGGTCGTG 59.341 52.381 0.00 0.00 0.00 4.35
3472 3590 0.523335 GTCGTGGGCGCATTGATTTC 60.523 55.000 10.83 0.00 38.14 2.17
3475 3593 0.248215 GTGGGCGCATTGATTTCTCG 60.248 55.000 10.83 0.00 0.00 4.04
3486 3604 7.375808 GCGCATTGATTTCTCGTTAATTAATGA 59.624 33.333 17.19 17.19 39.45 2.57
3487 3605 9.385902 CGCATTGATTTCTCGTTAATTAATGAT 57.614 29.630 18.21 5.89 39.45 2.45
3510 3628 3.744941 CGGTAATTAGCGTGGTGGA 57.255 52.632 24.98 0.00 41.75 4.02
3513 3631 2.547826 GGTAATTAGCGTGGTGGACTC 58.452 52.381 0.00 0.00 0.00 3.36
3598 3717 3.679389 AGGGCTTTGATGTCAGTAGTTG 58.321 45.455 0.00 0.00 0.00 3.16
3613 3732 7.813148 TGTCAGTAGTTGTAGTTAATGAAGAGC 59.187 37.037 0.00 0.00 0.00 4.09
3615 3734 7.039293 TCAGTAGTTGTAGTTAATGAAGAGCCA 60.039 37.037 0.00 0.00 0.00 4.75
3643 3762 1.259609 CCCAGGTACGTTGTAGGTCA 58.740 55.000 0.00 0.00 0.00 4.02
3646 3765 3.448301 CCCAGGTACGTTGTAGGTCATTA 59.552 47.826 0.00 0.00 0.00 1.90
3652 3771 6.071221 AGGTACGTTGTAGGTCATTACATTGA 60.071 38.462 0.00 0.00 33.81 2.57
3685 3804 7.696453 CCATTGACTAAATTAGTTTAGCGTTGG 59.304 37.037 15.50 13.24 46.97 3.77
3688 3807 8.243289 TGACTAAATTAGTTTAGCGTTGGTAC 57.757 34.615 15.50 0.00 46.97 3.34
3689 3808 8.090214 TGACTAAATTAGTTTAGCGTTGGTACT 58.910 33.333 15.50 0.00 46.97 2.73
3690 3809 9.573133 GACTAAATTAGTTTAGCGTTGGTACTA 57.427 33.333 15.50 0.00 46.97 1.82
3691 3810 9.927668 ACTAAATTAGTTTAGCGTTGGTACTAA 57.072 29.630 15.50 0.00 46.97 2.24
3704 3823 9.169592 AGCGTTGGTACTAAACAATTTATATGT 57.830 29.630 11.01 0.00 0.00 2.29
3705 3824 9.217223 GCGTTGGTACTAAACAATTTATATGTG 57.783 33.333 11.01 0.00 0.00 3.21
3741 3860 3.766151 TGTTTATTAGAGACGAGTGCGG 58.234 45.455 0.00 0.00 43.17 5.69
3745 3864 2.209064 TTAGAGACGAGTGCGGTGGC 62.209 60.000 0.00 0.00 43.17 5.01
3769 3888 1.569003 CATCAACGCGTGTGCAAGA 59.431 52.632 14.98 4.81 42.97 3.02
3791 3910 3.482156 ACTGACATCAACTCACAAGCT 57.518 42.857 0.00 0.00 0.00 3.74
3802 3921 0.820482 TCACAAGCTGCAGTGCATGT 60.820 50.000 20.10 17.42 44.20 3.21
3805 3924 1.538512 ACAAGCTGCAGTGCATGTAAG 59.461 47.619 20.10 7.66 42.04 2.34
3824 3943 6.668645 TGTAAGTGCATATGGGAAAGGTAAT 58.331 36.000 4.56 0.00 0.00 1.89
3826 3945 8.275758 TGTAAGTGCATATGGGAAAGGTAATAA 58.724 33.333 4.56 0.00 0.00 1.40
3866 3985 8.898983 TTTTAACCGAGTTTGTTTCTTGTAAG 57.101 30.769 0.00 0.00 0.00 2.34
3867 3986 7.614124 TTAACCGAGTTTGTTTCTTGTAAGT 57.386 32.000 0.00 0.00 0.00 2.24
3868 3987 5.479716 ACCGAGTTTGTTTCTTGTAAGTG 57.520 39.130 0.00 0.00 0.00 3.16
3869 3988 4.201881 ACCGAGTTTGTTTCTTGTAAGTGC 60.202 41.667 0.00 0.00 0.00 4.40
3870 3989 3.960002 CGAGTTTGTTTCTTGTAAGTGCG 59.040 43.478 0.00 0.00 0.00 5.34
3871 3990 4.260051 CGAGTTTGTTTCTTGTAAGTGCGA 60.260 41.667 0.00 0.00 0.00 5.10
3872 3991 5.558273 CGAGTTTGTTTCTTGTAAGTGCGAT 60.558 40.000 0.00 0.00 0.00 4.58
3873 3992 6.131544 AGTTTGTTTCTTGTAAGTGCGATT 57.868 33.333 0.00 0.00 0.00 3.34
3874 3993 6.560711 AGTTTGTTTCTTGTAAGTGCGATTT 58.439 32.000 0.00 0.00 0.00 2.17
3875 3994 7.033185 AGTTTGTTTCTTGTAAGTGCGATTTT 58.967 30.769 0.00 0.00 0.00 1.82
3876 3995 6.804534 TTGTTTCTTGTAAGTGCGATTTTG 57.195 33.333 0.00 0.00 0.00 2.44
3877 3996 6.125327 TGTTTCTTGTAAGTGCGATTTTGA 57.875 33.333 0.00 0.00 0.00 2.69
3878 3997 6.734137 TGTTTCTTGTAAGTGCGATTTTGAT 58.266 32.000 0.00 0.00 0.00 2.57
3879 3998 7.199766 TGTTTCTTGTAAGTGCGATTTTGATT 58.800 30.769 0.00 0.00 0.00 2.57
3880 3999 7.167302 TGTTTCTTGTAAGTGCGATTTTGATTG 59.833 33.333 0.00 0.00 0.00 2.67
3881 4000 5.698832 TCTTGTAAGTGCGATTTTGATTGG 58.301 37.500 0.00 0.00 0.00 3.16
3882 4001 3.832276 TGTAAGTGCGATTTTGATTGGC 58.168 40.909 0.00 0.00 0.00 4.52
3883 4002 2.368655 AAGTGCGATTTTGATTGGCC 57.631 45.000 0.00 0.00 0.00 5.36
3884 4003 0.171007 AGTGCGATTTTGATTGGCCG 59.829 50.000 0.00 0.00 0.00 6.13
3885 4004 0.801836 GTGCGATTTTGATTGGCCGG 60.802 55.000 0.00 0.00 0.00 6.13
3886 4005 1.247419 TGCGATTTTGATTGGCCGGT 61.247 50.000 1.90 0.00 0.00 5.28
3887 4006 0.801836 GCGATTTTGATTGGCCGGTG 60.802 55.000 1.90 0.00 0.00 4.94
3888 4007 0.525761 CGATTTTGATTGGCCGGTGT 59.474 50.000 1.90 0.00 0.00 4.16
3889 4008 1.732077 CGATTTTGATTGGCCGGTGTG 60.732 52.381 1.90 0.00 0.00 3.82
3890 4009 1.543802 GATTTTGATTGGCCGGTGTGA 59.456 47.619 1.90 0.00 0.00 3.58
3891 4010 1.626686 TTTTGATTGGCCGGTGTGAT 58.373 45.000 1.90 0.00 0.00 3.06
3892 4011 1.626686 TTTGATTGGCCGGTGTGATT 58.373 45.000 1.90 0.00 0.00 2.57
3893 4012 1.626686 TTGATTGGCCGGTGTGATTT 58.373 45.000 1.90 0.00 0.00 2.17
3894 4013 1.626686 TGATTGGCCGGTGTGATTTT 58.373 45.000 1.90 0.00 0.00 1.82
3895 4014 1.271934 TGATTGGCCGGTGTGATTTTG 59.728 47.619 1.90 0.00 0.00 2.44
3896 4015 0.607620 ATTGGCCGGTGTGATTTTGG 59.392 50.000 1.90 0.00 0.00 3.28
3897 4016 0.757188 TTGGCCGGTGTGATTTTGGT 60.757 50.000 1.90 0.00 0.00 3.67
3898 4017 0.110678 TGGCCGGTGTGATTTTGGTA 59.889 50.000 1.90 0.00 0.00 3.25
3899 4018 0.524414 GGCCGGTGTGATTTTGGTAC 59.476 55.000 1.90 0.00 0.00 3.34
3900 4019 1.240256 GCCGGTGTGATTTTGGTACA 58.760 50.000 1.90 0.00 0.00 2.90
3901 4020 1.068816 GCCGGTGTGATTTTGGTACAC 60.069 52.381 1.90 0.00 42.90 2.90
3902 4021 2.500229 CCGGTGTGATTTTGGTACACT 58.500 47.619 0.00 0.00 43.11 3.55
3903 4022 3.666274 CCGGTGTGATTTTGGTACACTA 58.334 45.455 0.00 0.00 43.11 2.74
3904 4023 4.066490 CCGGTGTGATTTTGGTACACTAA 58.934 43.478 0.00 0.00 43.11 2.24
3905 4024 4.515944 CCGGTGTGATTTTGGTACACTAAA 59.484 41.667 0.00 0.00 43.11 1.85
3906 4025 5.182380 CCGGTGTGATTTTGGTACACTAAAT 59.818 40.000 0.00 0.00 43.11 1.40
3907 4026 6.083630 CGGTGTGATTTTGGTACACTAAATG 58.916 40.000 0.00 0.00 43.11 2.32
3908 4027 6.386654 GGTGTGATTTTGGTACACTAAATGG 58.613 40.000 0.00 0.00 43.11 3.16
3909 4028 6.207810 GGTGTGATTTTGGTACACTAAATGGA 59.792 38.462 0.00 0.00 43.11 3.41
3910 4029 7.305474 GTGTGATTTTGGTACACTAAATGGAG 58.695 38.462 0.00 0.00 41.01 3.86
3911 4030 7.001674 TGTGATTTTGGTACACTAAATGGAGT 58.998 34.615 0.00 0.00 39.29 3.85
3912 4031 7.504238 TGTGATTTTGGTACACTAAATGGAGTT 59.496 33.333 0.00 0.00 39.29 3.01
3913 4032 8.357402 GTGATTTTGGTACACTAAATGGAGTTT 58.643 33.333 0.00 0.00 39.29 2.66
3914 4033 8.356657 TGATTTTGGTACACTAAATGGAGTTTG 58.643 33.333 0.00 0.00 39.29 2.93
3915 4034 7.648039 TTTTGGTACACTAAATGGAGTTTGT 57.352 32.000 0.00 0.00 39.29 2.83
3916 4035 6.627395 TTGGTACACTAAATGGAGTTTGTG 57.373 37.500 0.00 0.90 39.29 3.33
3917 4036 4.517453 TGGTACACTAAATGGAGTTTGTGC 59.483 41.667 0.00 0.00 34.77 4.57
3918 4037 4.760204 GGTACACTAAATGGAGTTTGTGCT 59.240 41.667 0.00 0.00 34.77 4.40
3919 4038 5.935789 GGTACACTAAATGGAGTTTGTGCTA 59.064 40.000 0.00 0.00 34.77 3.49
3920 4039 6.598064 GGTACACTAAATGGAGTTTGTGCTAT 59.402 38.462 0.00 0.00 34.77 2.97
3921 4040 7.120726 GGTACACTAAATGGAGTTTGTGCTATT 59.879 37.037 0.00 0.00 34.77 1.73
3922 4041 7.524717 ACACTAAATGGAGTTTGTGCTATTT 57.475 32.000 2.13 0.00 34.77 1.40
3923 4042 7.951591 ACACTAAATGGAGTTTGTGCTATTTT 58.048 30.769 2.13 0.00 34.77 1.82
3924 4043 7.867403 ACACTAAATGGAGTTTGTGCTATTTTG 59.133 33.333 2.13 0.00 34.77 2.44
3925 4044 7.867403 CACTAAATGGAGTTTGTGCTATTTTGT 59.133 33.333 0.00 0.00 0.00 2.83
3926 4045 8.421002 ACTAAATGGAGTTTGTGCTATTTTGTT 58.579 29.630 0.00 0.00 0.00 2.83
3927 4046 9.260002 CTAAATGGAGTTTGTGCTATTTTGTTT 57.740 29.630 0.00 0.00 0.00 2.83
3928 4047 8.504812 AAATGGAGTTTGTGCTATTTTGTTTT 57.495 26.923 0.00 0.00 0.00 2.43
3929 4048 6.900568 TGGAGTTTGTGCTATTTTGTTTTG 57.099 33.333 0.00 0.00 0.00 2.44
3930 4049 5.293079 TGGAGTTTGTGCTATTTTGTTTTGC 59.707 36.000 0.00 0.00 0.00 3.68
3931 4050 5.293079 GGAGTTTGTGCTATTTTGTTTTGCA 59.707 36.000 0.00 0.00 0.00 4.08
3932 4051 6.348621 AGTTTGTGCTATTTTGTTTTGCAG 57.651 33.333 0.00 0.00 34.15 4.41
3933 4052 6.105333 AGTTTGTGCTATTTTGTTTTGCAGA 58.895 32.000 0.00 0.00 34.15 4.26
3934 4053 6.762661 AGTTTGTGCTATTTTGTTTTGCAGAT 59.237 30.769 0.00 0.00 34.15 2.90
3935 4054 6.528014 TTGTGCTATTTTGTTTTGCAGATG 57.472 33.333 0.00 0.00 34.15 2.90
3936 4055 5.599732 TGTGCTATTTTGTTTTGCAGATGT 58.400 33.333 0.00 0.00 34.15 3.06
3937 4056 6.047870 TGTGCTATTTTGTTTTGCAGATGTT 58.952 32.000 0.00 0.00 34.15 2.71
3938 4057 6.018913 TGTGCTATTTTGTTTTGCAGATGTTG 60.019 34.615 0.00 0.00 34.15 3.33
3948 4067 1.211969 CAGATGTTGCTGTGCAGGC 59.788 57.895 4.80 4.80 40.61 4.85
3949 4068 1.074423 AGATGTTGCTGTGCAGGCT 59.926 52.632 11.99 0.00 40.61 4.58
3950 4069 1.211969 GATGTTGCTGTGCAGGCTG 59.788 57.895 10.94 10.94 40.61 4.85
3951 4070 2.209064 GATGTTGCTGTGCAGGCTGG 62.209 60.000 17.64 0.00 40.61 4.85
3952 4071 2.908940 GTTGCTGTGCAGGCTGGT 60.909 61.111 17.64 0.00 40.61 4.00
3953 4072 2.908428 TTGCTGTGCAGGCTGGTG 60.908 61.111 17.64 0.00 40.61 4.17
3954 4073 3.719646 TTGCTGTGCAGGCTGGTGT 62.720 57.895 17.64 0.00 40.61 4.16
3955 4074 2.908940 GCTGTGCAGGCTGGTGTT 60.909 61.111 17.64 0.00 0.00 3.32
3956 4075 3.036577 CTGTGCAGGCTGGTGTTG 58.963 61.111 17.64 0.00 0.00 3.33
3957 4076 1.526686 CTGTGCAGGCTGGTGTTGA 60.527 57.895 17.64 0.00 0.00 3.18
3958 4077 0.892358 CTGTGCAGGCTGGTGTTGAT 60.892 55.000 17.64 0.00 0.00 2.57
3959 4078 1.174078 TGTGCAGGCTGGTGTTGATG 61.174 55.000 17.64 0.00 0.00 3.07
3960 4079 0.890542 GTGCAGGCTGGTGTTGATGA 60.891 55.000 17.64 0.00 0.00 2.92
3961 4080 0.178995 TGCAGGCTGGTGTTGATGAA 60.179 50.000 17.64 0.00 0.00 2.57
3962 4081 0.242017 GCAGGCTGGTGTTGATGAAC 59.758 55.000 17.64 0.00 0.00 3.18
3963 4082 0.883833 CAGGCTGGTGTTGATGAACC 59.116 55.000 6.61 0.00 36.96 3.62
3964 4083 0.478072 AGGCTGGTGTTGATGAACCA 59.522 50.000 0.00 0.00 44.20 3.67
3965 4084 1.133513 AGGCTGGTGTTGATGAACCAA 60.134 47.619 0.00 0.00 45.63 3.67
3966 4085 1.895131 GGCTGGTGTTGATGAACCAAT 59.105 47.619 0.00 0.00 45.63 3.16
3967 4086 2.353011 GGCTGGTGTTGATGAACCAATG 60.353 50.000 0.00 0.00 45.63 2.82
3968 4087 2.353011 GCTGGTGTTGATGAACCAATGG 60.353 50.000 0.00 0.00 45.63 3.16
3969 4088 3.156293 CTGGTGTTGATGAACCAATGGA 58.844 45.455 6.16 0.00 45.63 3.41
3970 4089 3.156293 TGGTGTTGATGAACCAATGGAG 58.844 45.455 6.16 0.00 43.46 3.86
3971 4090 3.181435 TGGTGTTGATGAACCAATGGAGA 60.181 43.478 6.16 0.00 43.46 3.71
3972 4091 3.826157 GGTGTTGATGAACCAATGGAGAA 59.174 43.478 6.16 0.00 36.41 2.87
3973 4092 4.082571 GGTGTTGATGAACCAATGGAGAAG 60.083 45.833 6.16 0.00 36.41 2.85
3974 4093 4.761739 GTGTTGATGAACCAATGGAGAAGA 59.238 41.667 6.16 0.00 0.00 2.87
3975 4094 4.761739 TGTTGATGAACCAATGGAGAAGAC 59.238 41.667 6.16 0.00 0.00 3.01
3976 4095 4.916041 TGATGAACCAATGGAGAAGACT 57.084 40.909 6.16 0.00 0.00 3.24
3977 4096 6.173339 GTTGATGAACCAATGGAGAAGACTA 58.827 40.000 6.16 0.00 0.00 2.59
3978 4097 6.566079 TGATGAACCAATGGAGAAGACTAT 57.434 37.500 6.16 0.00 0.00 2.12
3979 4098 6.351711 TGATGAACCAATGGAGAAGACTATG 58.648 40.000 6.16 0.00 0.00 2.23
3980 4099 6.156775 TGATGAACCAATGGAGAAGACTATGA 59.843 38.462 6.16 0.00 0.00 2.15
3981 4100 6.566079 TGAACCAATGGAGAAGACTATGAT 57.434 37.500 6.16 0.00 0.00 2.45
3982 4101 6.586344 TGAACCAATGGAGAAGACTATGATC 58.414 40.000 6.16 0.00 0.00 2.92
3983 4102 5.207110 ACCAATGGAGAAGACTATGATCG 57.793 43.478 6.16 0.00 0.00 3.69
3984 4103 4.651503 ACCAATGGAGAAGACTATGATCGT 59.348 41.667 6.16 0.00 0.00 3.73
3985 4104 4.987285 CCAATGGAGAAGACTATGATCGTG 59.013 45.833 0.00 0.00 0.00 4.35
3986 4105 4.862902 ATGGAGAAGACTATGATCGTGG 57.137 45.455 0.00 0.00 0.00 4.94
3987 4106 3.898482 TGGAGAAGACTATGATCGTGGA 58.102 45.455 5.15 0.00 0.00 4.02
3988 4107 3.632604 TGGAGAAGACTATGATCGTGGAC 59.367 47.826 5.15 0.00 0.00 4.02
3989 4108 3.004944 GGAGAAGACTATGATCGTGGACC 59.995 52.174 5.15 0.00 0.00 4.46
3990 4109 3.632333 AGAAGACTATGATCGTGGACCA 58.368 45.455 5.15 0.00 0.00 4.02
3991 4110 3.381908 AGAAGACTATGATCGTGGACCAC 59.618 47.826 15.13 15.13 0.00 4.16
3992 4111 2.735151 AGACTATGATCGTGGACCACA 58.265 47.619 24.18 11.77 33.40 4.17
3993 4112 3.096852 AGACTATGATCGTGGACCACAA 58.903 45.455 24.18 6.57 33.40 3.33
3994 4113 3.513912 AGACTATGATCGTGGACCACAAA 59.486 43.478 24.18 11.98 33.40 2.83
3995 4114 4.162320 AGACTATGATCGTGGACCACAAAT 59.838 41.667 24.18 16.14 33.40 2.32
3996 4115 4.191544 ACTATGATCGTGGACCACAAATG 58.808 43.478 24.18 8.10 33.40 2.32
3997 4116 2.849294 TGATCGTGGACCACAAATGA 57.151 45.000 24.18 13.27 33.40 2.57
3998 4117 3.133141 TGATCGTGGACCACAAATGAA 57.867 42.857 24.18 5.40 33.40 2.57
3999 4118 3.481453 TGATCGTGGACCACAAATGAAA 58.519 40.909 24.18 4.10 33.40 2.69
4000 4119 3.501828 TGATCGTGGACCACAAATGAAAG 59.498 43.478 24.18 5.55 33.40 2.62
4001 4120 2.226330 TCGTGGACCACAAATGAAAGG 58.774 47.619 24.18 4.83 33.40 3.11
4002 4121 1.269448 CGTGGACCACAAATGAAAGGG 59.731 52.381 24.18 0.02 33.40 3.95
4003 4122 1.618343 GTGGACCACAAATGAAAGGGG 59.382 52.381 20.14 0.00 34.08 4.79
4004 4123 1.501170 TGGACCACAAATGAAAGGGGA 59.499 47.619 0.00 0.00 0.00 4.81
4005 4124 2.111613 TGGACCACAAATGAAAGGGGAT 59.888 45.455 0.00 0.00 0.00 3.85
4006 4125 2.497273 GGACCACAAATGAAAGGGGATG 59.503 50.000 0.00 0.00 0.00 3.51
4007 4126 2.497273 GACCACAAATGAAAGGGGATGG 59.503 50.000 0.00 0.00 0.00 3.51
4008 4127 1.207811 CCACAAATGAAAGGGGATGGC 59.792 52.381 0.00 0.00 0.00 4.40
4009 4128 2.181975 CACAAATGAAAGGGGATGGCT 58.818 47.619 0.00 0.00 0.00 4.75
4010 4129 2.093869 CACAAATGAAAGGGGATGGCTG 60.094 50.000 0.00 0.00 0.00 4.85
4011 4130 2.181975 CAAATGAAAGGGGATGGCTGT 58.818 47.619 0.00 0.00 0.00 4.40
4012 4131 3.245586 ACAAATGAAAGGGGATGGCTGTA 60.246 43.478 0.00 0.00 0.00 2.74
4013 4132 3.303351 AATGAAAGGGGATGGCTGTAG 57.697 47.619 0.00 0.00 0.00 2.74
4014 4133 1.965414 TGAAAGGGGATGGCTGTAGA 58.035 50.000 0.00 0.00 0.00 2.59
4015 4134 2.274542 TGAAAGGGGATGGCTGTAGAA 58.725 47.619 0.00 0.00 0.00 2.10
4016 4135 2.852449 TGAAAGGGGATGGCTGTAGAAT 59.148 45.455 0.00 0.00 0.00 2.40
4017 4136 3.217626 GAAAGGGGATGGCTGTAGAATG 58.782 50.000 0.00 0.00 0.00 2.67
4018 4137 1.898863 AGGGGATGGCTGTAGAATGT 58.101 50.000 0.00 0.00 0.00 2.71
4019 4138 3.060479 AGGGGATGGCTGTAGAATGTA 57.940 47.619 0.00 0.00 0.00 2.29
4020 4139 3.393687 AGGGGATGGCTGTAGAATGTAA 58.606 45.455 0.00 0.00 0.00 2.41
4021 4140 3.392616 AGGGGATGGCTGTAGAATGTAAG 59.607 47.826 0.00 0.00 0.00 2.34
4022 4141 3.136626 GGGGATGGCTGTAGAATGTAAGT 59.863 47.826 0.00 0.00 0.00 2.24
4023 4142 4.130118 GGGATGGCTGTAGAATGTAAGTG 58.870 47.826 0.00 0.00 0.00 3.16
4024 4143 4.141711 GGGATGGCTGTAGAATGTAAGTGA 60.142 45.833 0.00 0.00 0.00 3.41
4025 4144 4.811557 GGATGGCTGTAGAATGTAAGTGAC 59.188 45.833 0.00 0.00 0.00 3.67
4026 4145 3.845178 TGGCTGTAGAATGTAAGTGACG 58.155 45.455 0.00 0.00 0.00 4.35
4027 4146 2.603560 GGCTGTAGAATGTAAGTGACGC 59.396 50.000 0.00 0.00 0.00 5.19
4028 4147 2.603560 GCTGTAGAATGTAAGTGACGCC 59.396 50.000 0.00 0.00 0.00 5.68
4029 4148 3.845178 CTGTAGAATGTAAGTGACGCCA 58.155 45.455 0.00 0.00 0.00 5.69
4030 4149 4.433615 CTGTAGAATGTAAGTGACGCCAT 58.566 43.478 0.00 0.00 0.00 4.40
4031 4150 4.827692 TGTAGAATGTAAGTGACGCCATT 58.172 39.130 0.00 0.00 0.00 3.16
4032 4151 5.968254 TGTAGAATGTAAGTGACGCCATTA 58.032 37.500 0.00 0.00 0.00 1.90
4033 4152 6.578944 TGTAGAATGTAAGTGACGCCATTAT 58.421 36.000 0.00 0.00 0.00 1.28
4034 4153 7.045416 TGTAGAATGTAAGTGACGCCATTATT 58.955 34.615 0.00 0.00 0.00 1.40
4035 4154 7.551262 TGTAGAATGTAAGTGACGCCATTATTT 59.449 33.333 0.00 0.00 0.00 1.40
4036 4155 7.391148 AGAATGTAAGTGACGCCATTATTTT 57.609 32.000 0.00 0.00 0.00 1.82
4037 4156 7.472543 AGAATGTAAGTGACGCCATTATTTTC 58.527 34.615 0.00 0.00 0.00 2.29
4038 4157 6.751514 ATGTAAGTGACGCCATTATTTTCA 57.248 33.333 0.00 0.00 0.00 2.69
4039 4158 6.751514 TGTAAGTGACGCCATTATTTTCAT 57.248 33.333 0.00 0.00 0.00 2.57
4040 4159 6.550843 TGTAAGTGACGCCATTATTTTCATG 58.449 36.000 0.00 0.00 0.00 3.07
4041 4160 5.643379 AAGTGACGCCATTATTTTCATGT 57.357 34.783 0.00 0.00 0.00 3.21
4042 4161 5.643379 AGTGACGCCATTATTTTCATGTT 57.357 34.783 0.00 0.00 0.00 2.71
4043 4162 6.024552 AGTGACGCCATTATTTTCATGTTT 57.975 33.333 0.00 0.00 0.00 2.83
4044 4163 6.454795 AGTGACGCCATTATTTTCATGTTTT 58.545 32.000 0.00 0.00 0.00 2.43
4045 4164 6.365789 AGTGACGCCATTATTTTCATGTTTTG 59.634 34.615 0.00 0.00 0.00 2.44
4046 4165 6.364706 GTGACGCCATTATTTTCATGTTTTGA 59.635 34.615 0.00 0.00 0.00 2.69
4047 4166 6.925718 TGACGCCATTATTTTCATGTTTTGAA 59.074 30.769 0.00 0.00 42.62 2.69
4048 4167 7.601886 TGACGCCATTATTTTCATGTTTTGAAT 59.398 29.630 0.00 0.00 43.73 2.57
4049 4168 8.994429 ACGCCATTATTTTCATGTTTTGAATA 57.006 26.923 0.00 0.00 43.73 1.75
4050 4169 9.429359 ACGCCATTATTTTCATGTTTTGAATAA 57.571 25.926 0.00 0.00 43.73 1.40
4059 4178 7.528481 TTCATGTTTTGAATAATGCATCTGC 57.472 32.000 0.00 0.00 39.44 4.26
4060 4179 7.097834 TTCATGTTTTGAATAATGCATCTGCA 58.902 30.769 7.41 7.41 46.39 4.41
4061 4180 7.603024 TTCATGTTTTGAATAATGCATCTGCAA 59.397 29.630 9.20 0.00 45.90 4.08
4076 4195 3.396491 GCAAGTTGCATGAGCTCAC 57.604 52.632 20.97 8.09 44.26 3.51
4077 4196 0.879765 GCAAGTTGCATGAGCTCACT 59.120 50.000 20.97 8.39 44.26 3.41
4078 4197 1.268899 GCAAGTTGCATGAGCTCACTT 59.731 47.619 20.97 14.45 44.26 3.16
4079 4198 2.929960 CAAGTTGCATGAGCTCACTTG 58.070 47.619 20.97 21.78 46.47 3.16
4080 4199 2.267174 AGTTGCATGAGCTCACTTGT 57.733 45.000 20.97 0.00 42.74 3.16
4081 4200 2.579873 AGTTGCATGAGCTCACTTGTT 58.420 42.857 20.97 0.00 42.74 2.83
4112 4231 4.154918 ACGTCTCCGTCGTATCTACTTTTT 59.845 41.667 0.00 0.00 46.28 1.94
4117 4236 7.275123 GTCTCCGTCGTATCTACTTTTTCAAAT 59.725 37.037 0.00 0.00 0.00 2.32
4119 4238 9.245962 CTCCGTCGTATCTACTTTTTCAAATAT 57.754 33.333 0.00 0.00 0.00 1.28
4148 4267 5.763698 GCCCTTGTTTTAGACTCTAACTTGT 59.236 40.000 0.00 0.00 0.00 3.16
4221 4340 6.096564 TGCCATGATATTGTTTTATGTGCAGA 59.903 34.615 0.00 0.00 0.00 4.26
4413 4550 7.362229 CCGACTCCAACTCCAACTCTATATATC 60.362 44.444 0.00 0.00 0.00 1.63
4526 4665 2.800159 ATCTGGAGTCCGTTCGGGGT 62.800 60.000 11.37 0.00 36.01 4.95
4554 4696 4.487412 GGGATTCGTCGCCGTCGT 62.487 66.667 3.41 0.00 36.96 4.34
4555 4697 2.948134 GGATTCGTCGCCGTCGTC 60.948 66.667 3.41 0.00 36.96 4.20
4556 4698 2.202388 GATTCGTCGCCGTCGTCA 60.202 61.111 3.41 0.00 36.96 4.35
4565 4707 1.144057 GCCGTCGTCATTGAGGGAT 59.856 57.895 6.66 0.00 44.74 3.85
4710 4854 1.726791 GCTTGGCGATACGGATATGTG 59.273 52.381 0.00 0.00 0.00 3.21
4840 4988 4.103311 CCATAGGCTAGCTTCTAGGGTTTT 59.897 45.833 18.28 0.00 34.00 2.43
4881 5029 4.354893 AGATCTACTCCTGTACTACCCG 57.645 50.000 0.00 0.00 0.00 5.28
4981 5129 1.281867 CTTGCCTCCTGTTACCATCCA 59.718 52.381 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.241165 CTGTCACTTCATGCAGCCAA 58.759 50.000 0.00 0.00 0.00 4.52
39 40 3.871463 GCTTCCATCACCTGTCACTTCAT 60.871 47.826 0.00 0.00 0.00 2.57
49 50 1.617018 TAGCAGCGCTTCCATCACCT 61.617 55.000 7.50 0.00 40.44 4.00
98 99 4.029186 CGCTCCGCAAAAGCAGCA 62.029 61.111 0.00 0.00 39.81 4.41
118 119 2.992689 CAGCCAACTGCCATGCCA 60.993 61.111 0.00 0.00 42.71 4.92
126 127 3.181503 GCATACATCTTGTCAGCCAACTG 60.182 47.826 0.00 0.00 45.95 3.16
160 161 3.799755 GGAACACATGGACGGCGC 61.800 66.667 6.90 0.00 0.00 6.53
211 212 0.253327 CTACCAGGCTTTCTCCACCC 59.747 60.000 0.00 0.00 0.00 4.61
224 225 2.026301 GCGACGCCTAGCTACCAG 59.974 66.667 9.14 0.00 0.00 4.00
226 227 3.885521 ACGCGACGCCTAGCTACC 61.886 66.667 15.93 0.00 0.00 3.18
237 238 0.944311 ATGAGGAACACACACGCGAC 60.944 55.000 15.93 0.00 0.00 5.19
292 294 4.070630 TCAAAATTCAAACAAGCAGGGG 57.929 40.909 0.00 0.00 0.00 4.79
298 300 6.742264 GCAACCAAGTTCAAAATTCAAACAAG 59.258 34.615 0.00 0.00 0.00 3.16
300 302 5.936956 AGCAACCAAGTTCAAAATTCAAACA 59.063 32.000 0.00 0.00 0.00 2.83
318 320 0.609406 GGTTTCCCTCCAGAGCAACC 60.609 60.000 6.11 6.11 0.00 3.77
353 355 2.424601 TCCGCGCCACCTGTATATATAC 59.575 50.000 14.86 14.86 0.00 1.47
376 378 4.764823 ACTGGTTTTGATGGATTTTCGCTA 59.235 37.500 0.00 0.00 0.00 4.26
379 381 6.494893 TCTACTGGTTTTGATGGATTTTCG 57.505 37.500 0.00 0.00 0.00 3.46
381 383 8.526147 CATCTTCTACTGGTTTTGATGGATTTT 58.474 33.333 0.00 0.00 0.00 1.82
391 393 2.084546 GCGCCATCTTCTACTGGTTTT 58.915 47.619 0.00 0.00 34.86 2.43
400 402 1.377725 CTGTTGGGCGCCATCTTCT 60.378 57.895 30.85 0.00 31.53 2.85
457 459 0.390472 GCCTAGTGTCAGTGTGGAGC 60.390 60.000 5.91 0.00 0.00 4.70
493 495 5.941647 GCCATGGTTAGTTCCTAACTACAAA 59.058 40.000 14.67 0.00 43.89 2.83
517 519 0.592637 TGCACAAGATCGGTTGCTTG 59.407 50.000 14.12 0.00 45.27 4.01
519 521 1.200716 CATTGCACAAGATCGGTTGCT 59.799 47.619 14.12 0.00 0.00 3.91
539 541 5.634859 CCATGGAAGACAATTTTGTAAGTGC 59.365 40.000 5.56 0.00 42.43 4.40
546 548 4.281688 ACCTGACCATGGAAGACAATTTTG 59.718 41.667 21.47 2.95 0.00 2.44
551 553 1.545428 GCACCTGACCATGGAAGACAA 60.545 52.381 21.47 0.00 0.00 3.18
563 565 2.289694 ACACCATCACTAAGCACCTGAC 60.290 50.000 0.00 0.00 0.00 3.51
564 566 1.977854 ACACCATCACTAAGCACCTGA 59.022 47.619 0.00 0.00 0.00 3.86
567 569 2.236395 ACCTACACCATCACTAAGCACC 59.764 50.000 0.00 0.00 0.00 5.01
571 573 5.160607 TCCAAACCTACACCATCACTAAG 57.839 43.478 0.00 0.00 0.00 2.18
581 583 2.028385 ACGAGACCATCCAAACCTACAC 60.028 50.000 0.00 0.00 0.00 2.90
621 623 3.189568 AGCAAGGCTGTCAACAACA 57.810 47.368 0.00 0.00 37.57 3.33
651 653 8.574196 AACAAATCAAAACTTGGTAAAGATCG 57.426 30.769 0.00 0.00 36.84 3.69
662 664 8.606602 GCTCTGATGAAAAACAAATCAAAACTT 58.393 29.630 0.00 0.00 30.28 2.66
687 689 3.210857 TTGTAGTCAGACAAGGCGC 57.789 52.632 0.00 0.00 34.40 6.53
703 705 6.740905 ACGCAACGATTATTCATGTTAACTTG 59.259 34.615 13.84 13.84 0.00 3.16
706 708 6.844279 CCTACGCAACGATTATTCATGTTAAC 59.156 38.462 0.00 0.00 0.00 2.01
751 753 2.674033 TCCGTGTCGATCACCGGT 60.674 61.111 0.00 0.00 43.51 5.28
755 757 0.924090 GCAATCTCCGTGTCGATCAC 59.076 55.000 7.74 7.74 43.03 3.06
763 765 1.656652 CACCTAAGGCAATCTCCGTG 58.343 55.000 0.00 0.00 0.00 4.94
793 795 1.459592 CGGGAAAAACTCACAGTAGCG 59.540 52.381 0.00 0.00 0.00 4.26
798 800 3.793797 AAAACCGGGAAAAACTCACAG 57.206 42.857 6.32 0.00 0.00 3.66
810 812 0.678950 ATGGCAGTTCAAAAACCGGG 59.321 50.000 6.32 0.00 35.92 5.73
823 825 5.063180 TGCAAGAACTTTCATAATGGCAG 57.937 39.130 0.00 0.00 0.00 4.85
880 882 1.430632 CACGGCATGATCAACCTGC 59.569 57.895 10.68 10.68 38.95 4.85
903 905 0.698238 CTCCAACCACCAATCAGGGA 59.302 55.000 0.00 0.00 43.89 4.20
931 934 0.881118 GCGCAAGGGTCAAAATCTGA 59.119 50.000 0.30 0.00 38.28 3.27
950 953 1.665679 CAACCGCACTTGCAGGTATAG 59.334 52.381 15.08 0.00 43.38 1.31
952 955 0.036164 TCAACCGCACTTGCAGGTAT 59.964 50.000 15.08 6.29 43.38 2.73
960 963 1.213537 GCATGCATCAACCGCACTT 59.786 52.632 14.21 0.00 43.35 3.16
961 964 2.879907 GCATGCATCAACCGCACT 59.120 55.556 14.21 0.00 43.35 4.40
962 965 2.577644 CGCATGCATCAACCGCAC 60.578 61.111 19.57 0.00 43.35 5.34
988 991 0.548197 ACCGACATTTGGTCCCCCTA 60.548 55.000 0.00 0.00 43.95 3.53
989 992 1.850755 ACCGACATTTGGTCCCCCT 60.851 57.895 0.00 0.00 43.95 4.79
990 993 1.677633 CACCGACATTTGGTCCCCC 60.678 63.158 0.00 0.00 43.95 5.40
997 1000 0.238289 GCACCTGTCACCGACATTTG 59.762 55.000 0.00 0.00 41.94 2.32
1018 1021 1.561643 TCTTCGCTCCCATCTTCACT 58.438 50.000 0.00 0.00 0.00 3.41
1025 1028 2.809665 GCATCATCTTCTTCGCTCCCAT 60.810 50.000 0.00 0.00 0.00 4.00
1041 1044 0.693430 ATGGAGGGCTCTCTGCATCA 60.693 55.000 14.63 2.35 40.98 3.07
1047 1050 1.913722 CTTGCATGGAGGGCTCTCT 59.086 57.895 14.63 0.00 39.86 3.10
1090 1093 9.912634 GCATGCATTAACCTAATACATGTTATT 57.087 29.630 14.21 4.83 45.36 1.40
1118 1121 3.005554 AGTACAAGCAGCTACAAGCATG 58.994 45.455 0.00 0.00 45.56 4.06
1129 1132 2.291465 TCAGCAAAAGCAGTACAAGCAG 59.709 45.455 12.08 1.81 0.00 4.24
1168 1171 7.554835 ACGTGCCAAATACTTCCATTATTTAGA 59.445 33.333 0.00 0.00 29.75 2.10
1189 1192 4.626225 ACGGAAAAATGCACGTGC 57.374 50.000 33.11 33.11 38.24 5.34
1192 1195 1.446465 CGAAACACGGAAAAATGCACG 59.554 47.619 0.00 0.00 38.46 5.34
1203 1206 3.122948 CAGGTAATTCACTCGAAACACGG 59.877 47.826 0.00 0.00 42.82 4.94
1204 1207 3.122948 CCAGGTAATTCACTCGAAACACG 59.877 47.826 0.00 0.00 44.09 4.49
1207 1210 2.418976 GGCCAGGTAATTCACTCGAAAC 59.581 50.000 0.00 0.00 34.01 2.78
1214 1217 0.725117 CGAACGGCCAGGTAATTCAC 59.275 55.000 2.24 0.00 0.00 3.18
1221 1224 0.899720 TTTCTATCGAACGGCCAGGT 59.100 50.000 2.24 0.00 0.00 4.00
1222 1225 1.136305 TCTTTCTATCGAACGGCCAGG 59.864 52.381 2.24 0.00 0.00 4.45
1235 1238 5.046591 AGGGTCAATCAACGACATCTTTCTA 60.047 40.000 0.00 0.00 34.97 2.10
1356 1360 6.039382 AGCCCCGCTTAAATTAACTAATCAAG 59.961 38.462 0.00 0.00 33.89 3.02
1367 1371 0.395724 CTCCCAGCCCCGCTTAAATT 60.396 55.000 0.00 0.00 36.40 1.82
1400 1404 2.681706 CACCACACTCTTGCTCTAGTG 58.318 52.381 10.18 10.18 46.84 2.74
1407 1411 1.968540 GGAGGCACCACACTCTTGC 60.969 63.158 0.00 0.00 38.79 4.01
1408 1412 0.604780 CTGGAGGCACCACACTCTTG 60.605 60.000 0.00 0.00 44.64 3.02
1409 1413 0.764369 TCTGGAGGCACCACACTCTT 60.764 55.000 0.00 0.00 44.64 2.85
1410 1414 1.152247 TCTGGAGGCACCACACTCT 60.152 57.895 0.00 0.00 44.64 3.24
1411 1415 1.004440 GTCTGGAGGCACCACACTC 60.004 63.158 0.00 0.00 44.64 3.51
1412 1416 2.872388 CGTCTGGAGGCACCACACT 61.872 63.158 7.66 0.00 44.64 3.55
1445 1469 2.616510 CCCTGACCAAGTGGCTAGAAAG 60.617 54.545 0.00 0.00 39.32 2.62
1511 1536 1.376037 CGGTCCAGGGAGCTGTTTC 60.376 63.158 14.90 0.00 40.14 2.78
1514 1539 4.316823 TCCGGTCCAGGGAGCTGT 62.317 66.667 14.90 0.00 40.14 4.40
1515 1540 3.465403 CTCCGGTCCAGGGAGCTG 61.465 72.222 14.90 9.02 44.18 4.24
1530 1555 0.250901 TTCTTTGTGCTGGGAGGCTC 60.251 55.000 5.78 5.78 0.00 4.70
1545 1570 4.516698 CCAGATACAGTTGTGCTTGTTCTT 59.483 41.667 0.00 0.00 0.00 2.52
1562 1587 0.045623 TTCTCCCCAAGCCCCAGATA 59.954 55.000 0.00 0.00 0.00 1.98
1582 1615 3.181516 GCACATACCTTTTGCTTCTCTCG 60.182 47.826 0.00 0.00 33.26 4.04
1746 1780 0.317799 CTCCATCTATCGCAGCTGCT 59.682 55.000 34.22 20.57 39.32 4.24
1756 1790 4.968080 AGTTGAGGAAGAAGCTCCATCTAT 59.032 41.667 0.00 0.00 38.02 1.98
1854 1888 4.281688 ACACCTTTGATGTTTGGATTCCAG 59.718 41.667 5.36 0.00 33.81 3.86
1903 1937 2.422479 CCATGTCCTTGATCTTGCACAG 59.578 50.000 0.00 0.00 0.00 3.66
1990 2024 3.523157 ACATGATTCCCATCGCCCATATA 59.477 43.478 0.00 0.00 31.94 0.86
2014 2048 4.729868 GCCACCTCCCTATAATTGACAAT 58.270 43.478 0.00 0.00 0.00 2.71
2024 2058 1.213296 ACATTTCGCCACCTCCCTAT 58.787 50.000 0.00 0.00 0.00 2.57
2090 2124 3.867216 GCCTTCCCTGTTCGCTAAGTAAA 60.867 47.826 0.00 0.00 0.00 2.01
2093 2127 0.036294 GCCTTCCCTGTTCGCTAAGT 60.036 55.000 0.00 0.00 0.00 2.24
2110 2144 1.813513 TGCAAGTTCTCTAGCAAGCC 58.186 50.000 0.00 0.00 33.48 4.35
2247 2281 3.480470 GGCTATGATTGTACATGCCACT 58.520 45.455 0.00 0.00 40.53 4.00
2253 2287 4.071961 TGAAGCGGCTATGATTGTACAT 57.928 40.909 1.35 0.00 0.00 2.29
2304 2338 5.163834 CGGAAGGATTTCATTGGCAATTTTG 60.164 40.000 10.65 0.93 34.90 2.44
2485 2519 3.127895 TGCAAATATTGAACCGGTAGCAC 59.872 43.478 8.00 0.23 0.00 4.40
2511 2547 3.118956 TGCGTGAGAAAACACCCAATTTT 60.119 39.130 0.00 0.00 37.48 1.82
2512 2548 2.428890 TGCGTGAGAAAACACCCAATTT 59.571 40.909 0.00 0.00 37.48 1.82
2514 2550 1.686355 TGCGTGAGAAAACACCCAAT 58.314 45.000 0.00 0.00 37.48 3.16
2535 2616 6.892658 TTTTATAGGCAAAACAGAGAGCAA 57.107 33.333 0.00 0.00 0.00 3.91
2536 2617 6.434028 ACATTTTATAGGCAAAACAGAGAGCA 59.566 34.615 0.00 0.00 30.57 4.26
2574 2656 3.924114 TCCCGTGTTCATGGTAATCAT 57.076 42.857 9.76 0.00 36.31 2.45
2694 2778 2.332063 ATGTACCTCAAATCCAGCGG 57.668 50.000 0.00 0.00 0.00 5.52
2732 2817 6.913170 AGCAACCACACTGTATTTATTGAAG 58.087 36.000 0.00 0.00 0.00 3.02
2765 2850 1.067354 GCCTGCAGGGAACAATCAAAG 60.067 52.381 33.46 4.10 37.23 2.77
2809 2895 2.752354 CTCCCACAAACGGCATTGATTA 59.248 45.455 6.98 0.00 34.38 1.75
2818 2904 3.283684 TTGCGCTCCCACAAACGG 61.284 61.111 9.73 0.00 0.00 4.44
2895 2981 2.356913 TGTCGCATGGTCCACACG 60.357 61.111 8.71 8.71 0.00 4.49
2933 3019 7.378461 GTCTCACAAGCGAACAAATTTCAATAA 59.622 33.333 0.00 0.00 0.00 1.40
2960 3047 3.253188 GCAACAGGACAAACTTGCATCTA 59.747 43.478 0.00 0.00 39.09 1.98
2963 3050 1.755959 TGCAACAGGACAAACTTGCAT 59.244 42.857 0.00 0.00 43.07 3.96
2969 3056 8.587952 AAATTAGTTAATGCAACAGGACAAAC 57.412 30.769 0.00 0.00 39.81 2.93
3041 3128 0.747283 GATGCTCCACTGCCTCCTTG 60.747 60.000 0.00 0.00 0.00 3.61
3061 3148 1.226686 CTGCTCACGCTGCTTCAGTT 61.227 55.000 0.00 0.00 36.97 3.16
3089 3176 4.464597 ACTTGTGTCTCCTCTACCATCTTC 59.535 45.833 0.00 0.00 0.00 2.87
3098 3185 3.742640 GCACTTTGACTTGTGTCTCCTCT 60.743 47.826 0.00 0.00 43.29 3.69
3124 3211 4.558226 TCTGCCTTGCTCTTGATTTCTA 57.442 40.909 0.00 0.00 0.00 2.10
3136 3223 0.099436 CCGTTTAGCATCTGCCTTGC 59.901 55.000 0.00 0.00 43.38 4.01
3143 3230 1.550524 TCTCTGTGCCGTTTAGCATCT 59.449 47.619 0.00 0.00 46.24 2.90
3176 3263 1.334419 CGATCCATGAAATCGCCAAGC 60.334 52.381 14.68 0.00 39.50 4.01
3194 3281 0.244994 GAGCTTGCCTCTTCACTCGA 59.755 55.000 0.00 0.00 37.60 4.04
3265 3352 9.642343 ATCTGTGACATAGATTACCTGTACTTA 57.358 33.333 8.77 0.00 30.98 2.24
3281 3368 4.849813 TTCATCCTTGGATCTGTGACAT 57.150 40.909 0.00 0.00 0.00 3.06
3307 3394 9.507329 CTCATTACCATACCAGCATAAACTATT 57.493 33.333 0.00 0.00 0.00 1.73
3316 3432 4.568072 ACAACTCATTACCATACCAGCA 57.432 40.909 0.00 0.00 0.00 4.41
3318 3434 5.063438 CGACAACAACTCATTACCATACCAG 59.937 44.000 0.00 0.00 0.00 4.00
3329 3445 2.146342 CTCCAAGCGACAACAACTCAT 58.854 47.619 0.00 0.00 0.00 2.90
3337 3453 0.394938 TTAGCACCTCCAAGCGACAA 59.605 50.000 0.00 0.00 35.48 3.18
3346 3462 0.393132 GGAAGTGGCTTAGCACCTCC 60.393 60.000 6.53 7.50 0.00 4.30
3347 3463 0.615850 AGGAAGTGGCTTAGCACCTC 59.384 55.000 6.53 2.09 0.00 3.85
3348 3464 0.326264 CAGGAAGTGGCTTAGCACCT 59.674 55.000 6.53 3.64 0.00 4.00
3353 3469 3.432252 CACGTAAACAGGAAGTGGCTTAG 59.568 47.826 0.00 0.00 0.00 2.18
3356 3472 1.878953 CACGTAAACAGGAAGTGGCT 58.121 50.000 0.00 0.00 0.00 4.75
3375 3493 2.088178 CCCGTTTTCATGCAAGCGC 61.088 57.895 8.69 0.00 39.24 5.92
3426 3544 0.734889 CTATTTCCCAAGCACGGCAG 59.265 55.000 0.00 0.00 0.00 4.85
3438 3556 1.659098 CACGACCGCTGTTCTATTTCC 59.341 52.381 0.00 0.00 0.00 3.13
3443 3561 2.967397 CCCACGACCGCTGTTCTA 59.033 61.111 0.00 0.00 0.00 2.10
3444 3562 4.681978 GCCCACGACCGCTGTTCT 62.682 66.667 0.00 0.00 0.00 3.01
3454 3572 0.676466 AGAAATCAATGCGCCCACGA 60.676 50.000 4.18 0.00 43.93 4.35
3458 3576 0.451783 AACGAGAAATCAATGCGCCC 59.548 50.000 4.18 0.00 0.00 6.13
3486 3604 4.304110 CACCACGCTAATTACCGTCATAT 58.696 43.478 2.84 0.00 35.17 1.78
3487 3605 3.491276 CCACCACGCTAATTACCGTCATA 60.491 47.826 2.84 0.00 35.17 2.15
3492 3610 1.134907 AGTCCACCACGCTAATTACCG 60.135 52.381 0.00 0.00 0.00 4.02
3494 3612 3.241067 TGAGTCCACCACGCTAATTAC 57.759 47.619 0.00 0.00 0.00 1.89
3527 3645 7.540400 CCAGATCTTGCGTAATATCTAACAGAG 59.460 40.741 12.55 1.97 30.99 3.35
3528 3646 7.371159 CCAGATCTTGCGTAATATCTAACAGA 58.629 38.462 12.55 0.00 30.99 3.41
3598 3717 3.617263 CCACGTGGCTCTTCATTAACTAC 59.383 47.826 24.02 0.00 0.00 2.73
3613 3732 3.185299 TACCTGGGTTGCCACGTGG 62.185 63.158 30.66 30.66 38.53 4.94
3615 3734 2.428622 GTACCTGGGTTGCCACGT 59.571 61.111 0.00 0.00 0.00 4.49
3623 3742 1.260544 GACCTACAACGTACCTGGGT 58.739 55.000 0.00 0.00 0.00 4.51
3624 3743 1.259609 TGACCTACAACGTACCTGGG 58.740 55.000 0.00 0.00 0.00 4.45
3660 3779 8.234546 ACCAACGCTAAACTAATTTAGTCAATG 58.765 33.333 9.45 2.82 46.24 2.82
3741 3860 4.101790 CGTTGATGCACCCGCCAC 62.102 66.667 0.00 0.00 37.32 5.01
3745 3864 4.444024 CACGCGTTGATGCACCCG 62.444 66.667 10.22 0.00 34.15 5.28
3760 3879 3.969117 TGATGTCAGTTTCTTGCACAC 57.031 42.857 0.00 0.00 0.00 3.82
3762 3881 4.035558 TGAGTTGATGTCAGTTTCTTGCAC 59.964 41.667 0.00 0.00 0.00 4.57
3769 3888 4.036027 CAGCTTGTGAGTTGATGTCAGTTT 59.964 41.667 0.00 0.00 36.32 2.66
3802 3921 7.722285 GGTTATTACCTTTCCCATATGCACTTA 59.278 37.037 0.00 0.00 41.53 2.24
3805 3924 6.327279 GGTTATTACCTTTCCCATATGCAC 57.673 41.667 0.00 0.00 41.53 4.57
3840 3959 9.344309 CTTACAAGAAACAAACTCGGTTAAAAA 57.656 29.630 0.00 0.00 0.00 1.94
3841 3960 8.513774 ACTTACAAGAAACAAACTCGGTTAAAA 58.486 29.630 0.00 0.00 0.00 1.52
3842 3961 7.964011 CACTTACAAGAAACAAACTCGGTTAAA 59.036 33.333 0.00 0.00 0.00 1.52
3843 3962 7.465989 CACTTACAAGAAACAAACTCGGTTAA 58.534 34.615 0.00 0.00 0.00 2.01
3844 3963 6.457257 GCACTTACAAGAAACAAACTCGGTTA 60.457 38.462 0.00 0.00 0.00 2.85
3845 3964 5.675323 GCACTTACAAGAAACAAACTCGGTT 60.675 40.000 0.00 0.00 0.00 4.44
3846 3965 4.201881 GCACTTACAAGAAACAAACTCGGT 60.202 41.667 0.00 0.00 0.00 4.69
3847 3966 4.279659 GCACTTACAAGAAACAAACTCGG 58.720 43.478 0.00 0.00 0.00 4.63
3848 3967 3.960002 CGCACTTACAAGAAACAAACTCG 59.040 43.478 0.00 0.00 0.00 4.18
3849 3968 5.151632 TCGCACTTACAAGAAACAAACTC 57.848 39.130 0.00 0.00 0.00 3.01
3850 3969 5.751243 ATCGCACTTACAAGAAACAAACT 57.249 34.783 0.00 0.00 0.00 2.66
3851 3970 6.806120 AAATCGCACTTACAAGAAACAAAC 57.194 33.333 0.00 0.00 0.00 2.93
3852 3971 7.030165 TCAAAATCGCACTTACAAGAAACAAA 58.970 30.769 0.00 0.00 0.00 2.83
3853 3972 6.556212 TCAAAATCGCACTTACAAGAAACAA 58.444 32.000 0.00 0.00 0.00 2.83
3854 3973 6.125327 TCAAAATCGCACTTACAAGAAACA 57.875 33.333 0.00 0.00 0.00 2.83
3855 3974 7.358352 CCAATCAAAATCGCACTTACAAGAAAC 60.358 37.037 0.00 0.00 0.00 2.78
3856 3975 6.640499 CCAATCAAAATCGCACTTACAAGAAA 59.360 34.615 0.00 0.00 0.00 2.52
3857 3976 6.148948 CCAATCAAAATCGCACTTACAAGAA 58.851 36.000 0.00 0.00 0.00 2.52
3858 3977 5.698832 CCAATCAAAATCGCACTTACAAGA 58.301 37.500 0.00 0.00 0.00 3.02
3859 3978 4.324402 GCCAATCAAAATCGCACTTACAAG 59.676 41.667 0.00 0.00 0.00 3.16
3860 3979 4.233789 GCCAATCAAAATCGCACTTACAA 58.766 39.130 0.00 0.00 0.00 2.41
3861 3980 3.366883 GGCCAATCAAAATCGCACTTACA 60.367 43.478 0.00 0.00 0.00 2.41
3862 3981 3.179048 GGCCAATCAAAATCGCACTTAC 58.821 45.455 0.00 0.00 0.00 2.34
3863 3982 2.159448 CGGCCAATCAAAATCGCACTTA 60.159 45.455 2.24 0.00 0.00 2.24
3864 3983 1.402720 CGGCCAATCAAAATCGCACTT 60.403 47.619 2.24 0.00 0.00 3.16
3865 3984 0.171007 CGGCCAATCAAAATCGCACT 59.829 50.000 2.24 0.00 0.00 4.40
3866 3985 0.801836 CCGGCCAATCAAAATCGCAC 60.802 55.000 2.24 0.00 0.00 5.34
3867 3986 1.247419 ACCGGCCAATCAAAATCGCA 61.247 50.000 0.00 0.00 0.00 5.10
3868 3987 0.801836 CACCGGCCAATCAAAATCGC 60.802 55.000 0.00 0.00 0.00 4.58
3869 3988 0.525761 ACACCGGCCAATCAAAATCG 59.474 50.000 0.00 0.00 0.00 3.34
3870 3989 1.543802 TCACACCGGCCAATCAAAATC 59.456 47.619 0.00 0.00 0.00 2.17
3871 3990 1.626686 TCACACCGGCCAATCAAAAT 58.373 45.000 0.00 0.00 0.00 1.82
3872 3991 1.626686 ATCACACCGGCCAATCAAAA 58.373 45.000 0.00 0.00 0.00 2.44
3873 3992 1.626686 AATCACACCGGCCAATCAAA 58.373 45.000 0.00 0.00 0.00 2.69
3874 3993 1.626686 AAATCACACCGGCCAATCAA 58.373 45.000 0.00 0.00 0.00 2.57
3875 3994 1.271934 CAAAATCACACCGGCCAATCA 59.728 47.619 0.00 0.00 0.00 2.57
3876 3995 1.404047 CCAAAATCACACCGGCCAATC 60.404 52.381 0.00 0.00 0.00 2.67
3877 3996 0.607620 CCAAAATCACACCGGCCAAT 59.392 50.000 0.00 0.00 0.00 3.16
3878 3997 0.757188 ACCAAAATCACACCGGCCAA 60.757 50.000 0.00 0.00 0.00 4.52
3879 3998 0.110678 TACCAAAATCACACCGGCCA 59.889 50.000 0.00 0.00 0.00 5.36
3880 3999 0.524414 GTACCAAAATCACACCGGCC 59.476 55.000 0.00 0.00 0.00 6.13
3881 4000 1.068816 GTGTACCAAAATCACACCGGC 60.069 52.381 0.00 0.00 37.24 6.13
3882 4001 2.500229 AGTGTACCAAAATCACACCGG 58.500 47.619 0.00 0.00 42.81 5.28
3883 4002 5.676532 TTTAGTGTACCAAAATCACACCG 57.323 39.130 0.00 0.00 42.81 4.94
3884 4003 6.207810 TCCATTTAGTGTACCAAAATCACACC 59.792 38.462 0.00 0.00 42.81 4.16
3885 4004 7.040686 ACTCCATTTAGTGTACCAAAATCACAC 60.041 37.037 0.00 0.00 42.27 3.82
3886 4005 7.001674 ACTCCATTTAGTGTACCAAAATCACA 58.998 34.615 0.00 0.00 34.94 3.58
3887 4006 7.448748 ACTCCATTTAGTGTACCAAAATCAC 57.551 36.000 0.00 0.00 0.00 3.06
3888 4007 8.356657 CAAACTCCATTTAGTGTACCAAAATCA 58.643 33.333 0.00 0.00 0.00 2.57
3889 4008 8.357402 ACAAACTCCATTTAGTGTACCAAAATC 58.643 33.333 0.00 0.00 0.00 2.17
3890 4009 8.141268 CACAAACTCCATTTAGTGTACCAAAAT 58.859 33.333 0.00 0.00 30.78 1.82
3891 4010 7.484975 CACAAACTCCATTTAGTGTACCAAAA 58.515 34.615 0.00 0.00 30.78 2.44
3892 4011 6.460399 GCACAAACTCCATTTAGTGTACCAAA 60.460 38.462 0.00 0.00 34.48 3.28
3893 4012 5.009210 GCACAAACTCCATTTAGTGTACCAA 59.991 40.000 0.00 0.00 34.48 3.67
3894 4013 4.517453 GCACAAACTCCATTTAGTGTACCA 59.483 41.667 0.00 0.00 34.48 3.25
3895 4014 4.760204 AGCACAAACTCCATTTAGTGTACC 59.240 41.667 0.00 0.00 34.48 3.34
3896 4015 5.941948 AGCACAAACTCCATTTAGTGTAC 57.058 39.130 0.00 0.00 34.48 2.90
3897 4016 8.630054 AAATAGCACAAACTCCATTTAGTGTA 57.370 30.769 0.00 0.00 34.48 2.90
3898 4017 7.524717 AAATAGCACAAACTCCATTTAGTGT 57.475 32.000 0.00 0.00 34.48 3.55
3899 4018 7.867403 ACAAAATAGCACAAACTCCATTTAGTG 59.133 33.333 0.00 0.00 34.80 2.74
3900 4019 7.951591 ACAAAATAGCACAAACTCCATTTAGT 58.048 30.769 0.00 0.00 0.00 2.24
3901 4020 8.816640 AACAAAATAGCACAAACTCCATTTAG 57.183 30.769 0.00 0.00 0.00 1.85
3902 4021 9.606631 AAAACAAAATAGCACAAACTCCATTTA 57.393 25.926 0.00 0.00 0.00 1.40
3903 4022 8.397148 CAAAACAAAATAGCACAAACTCCATTT 58.603 29.630 0.00 0.00 0.00 2.32
3904 4023 7.467131 GCAAAACAAAATAGCACAAACTCCATT 60.467 33.333 0.00 0.00 0.00 3.16
3905 4024 6.018016 GCAAAACAAAATAGCACAAACTCCAT 60.018 34.615 0.00 0.00 0.00 3.41
3906 4025 5.293079 GCAAAACAAAATAGCACAAACTCCA 59.707 36.000 0.00 0.00 0.00 3.86
3907 4026 5.293079 TGCAAAACAAAATAGCACAAACTCC 59.707 36.000 0.00 0.00 0.00 3.85
3908 4027 6.255453 TCTGCAAAACAAAATAGCACAAACTC 59.745 34.615 0.00 0.00 0.00 3.01
3909 4028 6.105333 TCTGCAAAACAAAATAGCACAAACT 58.895 32.000 0.00 0.00 0.00 2.66
3910 4029 6.343226 TCTGCAAAACAAAATAGCACAAAC 57.657 33.333 0.00 0.00 0.00 2.93
3911 4030 6.538021 ACATCTGCAAAACAAAATAGCACAAA 59.462 30.769 0.00 0.00 0.00 2.83
3912 4031 6.047870 ACATCTGCAAAACAAAATAGCACAA 58.952 32.000 0.00 0.00 0.00 3.33
3913 4032 5.599732 ACATCTGCAAAACAAAATAGCACA 58.400 33.333 0.00 0.00 0.00 4.57
3914 4033 6.357198 CAACATCTGCAAAACAAAATAGCAC 58.643 36.000 0.00 0.00 0.00 4.40
3915 4034 6.528014 CAACATCTGCAAAACAAAATAGCA 57.472 33.333 0.00 0.00 0.00 3.49
3930 4049 1.211969 GCCTGCACAGCAACATCTG 59.788 57.895 0.00 0.00 38.41 2.90
3931 4050 1.074423 AGCCTGCACAGCAACATCT 59.926 52.632 6.73 0.00 38.41 2.90
3932 4051 1.211969 CAGCCTGCACAGCAACATC 59.788 57.895 6.73 0.00 38.41 3.06
3933 4052 2.273179 CCAGCCTGCACAGCAACAT 61.273 57.895 6.73 0.00 38.41 2.71
3934 4053 2.908428 CCAGCCTGCACAGCAACA 60.908 61.111 6.73 0.00 38.41 3.33
3935 4054 2.908940 ACCAGCCTGCACAGCAAC 60.909 61.111 6.73 0.00 38.41 4.17
3936 4055 2.908428 CACCAGCCTGCACAGCAA 60.908 61.111 6.73 0.00 38.41 3.91
3937 4056 3.719646 AACACCAGCCTGCACAGCA 62.720 57.895 6.73 0.00 36.92 4.41
3938 4057 2.908940 AACACCAGCCTGCACAGC 60.909 61.111 0.00 0.00 0.00 4.40
3939 4058 0.892358 ATCAACACCAGCCTGCACAG 60.892 55.000 0.00 0.00 0.00 3.66
3940 4059 1.151221 ATCAACACCAGCCTGCACA 59.849 52.632 0.00 0.00 0.00 4.57
3941 4060 0.890542 TCATCAACACCAGCCTGCAC 60.891 55.000 0.00 0.00 0.00 4.57
3942 4061 0.178995 TTCATCAACACCAGCCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
3943 4062 0.242017 GTTCATCAACACCAGCCTGC 59.758 55.000 0.00 0.00 32.14 4.85
3944 4063 0.883833 GGTTCATCAACACCAGCCTG 59.116 55.000 0.00 0.00 33.70 4.85
3945 4064 0.478072 TGGTTCATCAACACCAGCCT 59.522 50.000 0.00 0.00 38.20 4.58
3946 4065 1.327303 TTGGTTCATCAACACCAGCC 58.673 50.000 0.00 0.00 44.06 4.85
3947 4066 2.353011 CCATTGGTTCATCAACACCAGC 60.353 50.000 0.00 0.00 44.06 4.85
3948 4067 3.156293 TCCATTGGTTCATCAACACCAG 58.844 45.455 1.86 0.00 44.06 4.00
3949 4068 3.156293 CTCCATTGGTTCATCAACACCA 58.844 45.455 1.86 0.00 41.55 4.17
3950 4069 3.420893 TCTCCATTGGTTCATCAACACC 58.579 45.455 1.86 0.00 33.70 4.16
3951 4070 4.761739 TCTTCTCCATTGGTTCATCAACAC 59.238 41.667 1.86 0.00 33.70 3.32
3952 4071 4.761739 GTCTTCTCCATTGGTTCATCAACA 59.238 41.667 1.86 0.00 33.70 3.33
3953 4072 5.006386 AGTCTTCTCCATTGGTTCATCAAC 58.994 41.667 1.86 0.00 0.00 3.18
3954 4073 5.246981 AGTCTTCTCCATTGGTTCATCAA 57.753 39.130 1.86 0.00 0.00 2.57
3955 4074 4.916041 AGTCTTCTCCATTGGTTCATCA 57.084 40.909 1.86 0.00 0.00 3.07
3956 4075 6.586344 TCATAGTCTTCTCCATTGGTTCATC 58.414 40.000 1.86 0.00 0.00 2.92
3957 4076 6.566079 TCATAGTCTTCTCCATTGGTTCAT 57.434 37.500 1.86 0.00 0.00 2.57
3958 4077 6.566079 ATCATAGTCTTCTCCATTGGTTCA 57.434 37.500 1.86 0.00 0.00 3.18
3959 4078 5.694006 CGATCATAGTCTTCTCCATTGGTTC 59.306 44.000 1.86 0.00 0.00 3.62
3960 4079 5.129485 ACGATCATAGTCTTCTCCATTGGTT 59.871 40.000 1.86 0.00 0.00 3.67
3961 4080 4.651503 ACGATCATAGTCTTCTCCATTGGT 59.348 41.667 1.86 0.00 0.00 3.67
3962 4081 4.987285 CACGATCATAGTCTTCTCCATTGG 59.013 45.833 0.00 0.00 0.00 3.16
3963 4082 4.987285 CCACGATCATAGTCTTCTCCATTG 59.013 45.833 0.00 0.00 0.00 2.82
3964 4083 4.895889 TCCACGATCATAGTCTTCTCCATT 59.104 41.667 0.00 0.00 0.00 3.16
3965 4084 4.279671 GTCCACGATCATAGTCTTCTCCAT 59.720 45.833 0.00 0.00 0.00 3.41
3966 4085 3.632604 GTCCACGATCATAGTCTTCTCCA 59.367 47.826 0.00 0.00 0.00 3.86
3967 4086 3.004944 GGTCCACGATCATAGTCTTCTCC 59.995 52.174 0.00 0.00 0.00 3.71
3968 4087 3.632604 TGGTCCACGATCATAGTCTTCTC 59.367 47.826 0.00 0.00 0.00 2.87
3969 4088 3.381908 GTGGTCCACGATCATAGTCTTCT 59.618 47.826 6.18 0.00 0.00 2.85
3970 4089 3.130516 TGTGGTCCACGATCATAGTCTTC 59.869 47.826 17.27 0.00 37.14 2.87
3971 4090 3.096852 TGTGGTCCACGATCATAGTCTT 58.903 45.455 17.27 0.00 37.14 3.01
3972 4091 2.735151 TGTGGTCCACGATCATAGTCT 58.265 47.619 17.27 0.00 37.14 3.24
3973 4092 3.520290 TTGTGGTCCACGATCATAGTC 57.480 47.619 17.27 0.00 37.14 2.59
3974 4093 3.973206 TTTGTGGTCCACGATCATAGT 57.027 42.857 17.27 0.00 37.14 2.12
3975 4094 4.441792 TCATTTGTGGTCCACGATCATAG 58.558 43.478 17.27 3.77 37.14 2.23
3976 4095 4.479786 TCATTTGTGGTCCACGATCATA 57.520 40.909 17.27 0.60 37.14 2.15
3977 4096 3.348647 TCATTTGTGGTCCACGATCAT 57.651 42.857 17.27 4.17 37.14 2.45
3978 4097 2.849294 TCATTTGTGGTCCACGATCA 57.151 45.000 17.27 1.73 37.14 2.92
3979 4098 3.119849 CCTTTCATTTGTGGTCCACGATC 60.120 47.826 17.27 0.00 37.14 3.69
3980 4099 2.819608 CCTTTCATTTGTGGTCCACGAT 59.180 45.455 17.27 10.73 37.14 3.73
3981 4100 2.226330 CCTTTCATTTGTGGTCCACGA 58.774 47.619 17.27 12.89 37.14 4.35
3982 4101 1.269448 CCCTTTCATTTGTGGTCCACG 59.731 52.381 17.27 2.96 37.14 4.94
3983 4102 1.618343 CCCCTTTCATTTGTGGTCCAC 59.382 52.381 15.64 15.64 34.56 4.02
3984 4103 1.501170 TCCCCTTTCATTTGTGGTCCA 59.499 47.619 0.00 0.00 0.00 4.02
3985 4104 2.302587 TCCCCTTTCATTTGTGGTCC 57.697 50.000 0.00 0.00 0.00 4.46
3986 4105 2.497273 CCATCCCCTTTCATTTGTGGTC 59.503 50.000 0.00 0.00 0.00 4.02
3987 4106 2.539302 CCATCCCCTTTCATTTGTGGT 58.461 47.619 0.00 0.00 0.00 4.16
3988 4107 1.207811 GCCATCCCCTTTCATTTGTGG 59.792 52.381 0.00 0.00 0.00 4.17
3989 4108 2.093869 CAGCCATCCCCTTTCATTTGTG 60.094 50.000 0.00 0.00 0.00 3.33
3990 4109 2.181975 CAGCCATCCCCTTTCATTTGT 58.818 47.619 0.00 0.00 0.00 2.83
3991 4110 2.181975 ACAGCCATCCCCTTTCATTTG 58.818 47.619 0.00 0.00 0.00 2.32
3992 4111 2.629017 ACAGCCATCCCCTTTCATTT 57.371 45.000 0.00 0.00 0.00 2.32
3993 4112 2.852449 TCTACAGCCATCCCCTTTCATT 59.148 45.455 0.00 0.00 0.00 2.57
3994 4113 2.492025 TCTACAGCCATCCCCTTTCAT 58.508 47.619 0.00 0.00 0.00 2.57
3995 4114 1.965414 TCTACAGCCATCCCCTTTCA 58.035 50.000 0.00 0.00 0.00 2.69
3996 4115 3.217626 CATTCTACAGCCATCCCCTTTC 58.782 50.000 0.00 0.00 0.00 2.62
3997 4116 2.582636 ACATTCTACAGCCATCCCCTTT 59.417 45.455 0.00 0.00 0.00 3.11
3998 4117 2.208872 ACATTCTACAGCCATCCCCTT 58.791 47.619 0.00 0.00 0.00 3.95
3999 4118 1.898863 ACATTCTACAGCCATCCCCT 58.101 50.000 0.00 0.00 0.00 4.79
4000 4119 3.136626 ACTTACATTCTACAGCCATCCCC 59.863 47.826 0.00 0.00 0.00 4.81
4001 4120 4.130118 CACTTACATTCTACAGCCATCCC 58.870 47.826 0.00 0.00 0.00 3.85
4002 4121 4.811557 GTCACTTACATTCTACAGCCATCC 59.188 45.833 0.00 0.00 0.00 3.51
4003 4122 4.504461 CGTCACTTACATTCTACAGCCATC 59.496 45.833 0.00 0.00 0.00 3.51
4004 4123 4.433615 CGTCACTTACATTCTACAGCCAT 58.566 43.478 0.00 0.00 0.00 4.40
4005 4124 3.845178 CGTCACTTACATTCTACAGCCA 58.155 45.455 0.00 0.00 0.00 4.75
4006 4125 2.603560 GCGTCACTTACATTCTACAGCC 59.396 50.000 0.00 0.00 0.00 4.85
4007 4126 2.603560 GGCGTCACTTACATTCTACAGC 59.396 50.000 0.00 0.00 0.00 4.40
4008 4127 3.845178 TGGCGTCACTTACATTCTACAG 58.155 45.455 0.00 0.00 0.00 2.74
4009 4128 3.945981 TGGCGTCACTTACATTCTACA 57.054 42.857 0.00 0.00 0.00 2.74
4010 4129 7.478520 AATAATGGCGTCACTTACATTCTAC 57.521 36.000 0.00 0.00 35.40 2.59
4011 4130 8.500753 AAAATAATGGCGTCACTTACATTCTA 57.499 30.769 0.00 0.00 35.40 2.10
4012 4131 7.120579 TGAAAATAATGGCGTCACTTACATTCT 59.879 33.333 0.00 0.00 35.40 2.40
4013 4132 7.247728 TGAAAATAATGGCGTCACTTACATTC 58.752 34.615 0.00 2.61 35.40 2.67
4014 4133 7.151999 TGAAAATAATGGCGTCACTTACATT 57.848 32.000 0.00 0.00 37.34 2.71
4015 4134 6.751514 TGAAAATAATGGCGTCACTTACAT 57.248 33.333 0.00 0.00 0.00 2.29
4016 4135 6.150307 ACATGAAAATAATGGCGTCACTTACA 59.850 34.615 0.00 0.00 0.00 2.41
4017 4136 6.551736 ACATGAAAATAATGGCGTCACTTAC 58.448 36.000 0.00 0.00 0.00 2.34
4018 4137 6.751514 ACATGAAAATAATGGCGTCACTTA 57.248 33.333 0.00 0.00 0.00 2.24
4019 4138 5.643379 ACATGAAAATAATGGCGTCACTT 57.357 34.783 0.00 0.00 0.00 3.16
4020 4139 5.643379 AACATGAAAATAATGGCGTCACT 57.357 34.783 0.00 0.00 0.00 3.41
4021 4140 6.364706 TCAAAACATGAAAATAATGGCGTCAC 59.635 34.615 0.00 0.00 34.30 3.67
4022 4141 6.450545 TCAAAACATGAAAATAATGGCGTCA 58.549 32.000 0.00 0.00 34.30 4.35
4023 4142 6.942886 TCAAAACATGAAAATAATGGCGTC 57.057 33.333 0.00 0.00 34.30 5.19
4033 4152 8.444715 GCAGATGCATTATTCAAAACATGAAAA 58.555 29.630 0.00 0.00 45.11 2.29
4034 4153 7.966111 GCAGATGCATTATTCAAAACATGAAA 58.034 30.769 0.00 0.00 45.11 2.69
4035 4154 7.528481 GCAGATGCATTATTCAAAACATGAA 57.472 32.000 0.00 0.00 45.59 2.57
4058 4177 0.879765 AGTGAGCTCATGCAACTTGC 59.120 50.000 21.47 6.82 45.29 4.01
4060 4179 2.579873 ACAAGTGAGCTCATGCAACTT 58.420 42.857 21.47 14.81 44.00 2.66
4061 4180 2.267174 ACAAGTGAGCTCATGCAACT 57.733 45.000 21.47 8.94 42.74 3.16
4062 4181 2.291465 TGAACAAGTGAGCTCATGCAAC 59.709 45.455 21.47 6.41 42.74 4.17
4063 4182 2.574450 TGAACAAGTGAGCTCATGCAA 58.426 42.857 21.47 1.59 42.74 4.08
4064 4183 2.259266 TGAACAAGTGAGCTCATGCA 57.741 45.000 21.47 5.55 42.74 3.96
4065 4184 3.189910 TCAATGAACAAGTGAGCTCATGC 59.810 43.478 21.47 8.07 40.05 4.06
4066 4185 5.562506 ATCAATGAACAAGTGAGCTCATG 57.437 39.130 21.47 17.46 0.00 3.07
4067 4186 5.292834 CGTATCAATGAACAAGTGAGCTCAT 59.707 40.000 21.47 2.39 0.00 2.90
4068 4187 4.627035 CGTATCAATGAACAAGTGAGCTCA 59.373 41.667 13.74 13.74 0.00 4.26
4069 4188 4.627467 ACGTATCAATGAACAAGTGAGCTC 59.373 41.667 6.82 6.82 0.00 4.09
4070 4189 4.569943 ACGTATCAATGAACAAGTGAGCT 58.430 39.130 0.00 0.00 0.00 4.09
4071 4190 4.627467 AGACGTATCAATGAACAAGTGAGC 59.373 41.667 0.00 0.00 0.00 4.26
4072 4191 5.289675 GGAGACGTATCAATGAACAAGTGAG 59.710 44.000 12.92 0.00 0.00 3.51
4073 4192 5.168569 GGAGACGTATCAATGAACAAGTGA 58.831 41.667 12.92 0.00 0.00 3.41
4074 4193 5.456192 GGAGACGTATCAATGAACAAGTG 57.544 43.478 12.92 0.00 0.00 3.16
4117 4236 7.833285 AGAGTCTAAAACAAGGGCAAAAATA 57.167 32.000 0.00 0.00 0.00 1.40
4119 4238 7.340999 AGTTAGAGTCTAAAACAAGGGCAAAAA 59.659 33.333 14.20 0.00 0.00 1.94
4135 4254 9.388506 CCATTCAAATCATACAAGTTAGAGTCT 57.611 33.333 0.00 0.00 0.00 3.24
4148 4267 7.444183 GTCCGGATTAGTTCCATTCAAATCATA 59.556 37.037 7.81 0.00 45.78 2.15
4221 4340 7.447238 TCAGGTCATTCCGAGAACTTTTATTTT 59.553 33.333 0.00 0.00 41.99 1.82
4288 4408 1.089920 CCTGGTCTTCATCTTTGGCG 58.910 55.000 0.00 0.00 0.00 5.69
4291 4411 1.957113 GCCCCCTGGTCTTCATCTTTG 60.957 57.143 0.00 0.00 0.00 2.77
4382 4519 1.609794 GGAGTTGGAGTCGGGAGGT 60.610 63.158 0.00 0.00 0.00 3.85
4383 4520 1.192146 TTGGAGTTGGAGTCGGGAGG 61.192 60.000 0.00 0.00 0.00 4.30
4385 4522 0.471211 AGTTGGAGTTGGAGTCGGGA 60.471 55.000 0.00 0.00 0.00 5.14
4386 4523 0.037232 GAGTTGGAGTTGGAGTCGGG 60.037 60.000 0.00 0.00 0.00 5.14
4392 4529 7.013220 AGCAGATATATAGAGTTGGAGTTGGA 58.987 38.462 0.00 0.00 0.00 3.53
4435 4574 5.250235 ACGCGATGAAATCTTCTCTTCTA 57.750 39.130 15.93 0.00 42.58 2.10
4439 4578 6.535150 TCATAAAACGCGATGAAATCTTCTCT 59.465 34.615 15.93 0.00 42.58 3.10
4440 4579 6.705782 TCATAAAACGCGATGAAATCTTCTC 58.294 36.000 15.93 0.00 42.58 2.87
4441 4580 6.662414 TCATAAAACGCGATGAAATCTTCT 57.338 33.333 15.93 0.00 42.58 2.85
4447 4586 4.804665 TCCGTATCATAAAACGCGATGAAA 59.195 37.500 15.93 0.00 35.76 2.69
4526 4665 1.760875 CGAATCCCCCTCTCCGGAA 60.761 63.158 5.23 0.00 33.16 4.30
4554 4696 5.573380 CTAATCCAGGAATCCCTCAATGA 57.427 43.478 0.00 0.00 42.02 2.57
4671 4814 2.216750 CTTGCCTTCCACGCCAATGG 62.217 60.000 0.00 0.00 41.57 3.16
4673 4816 2.639327 GCTTGCCTTCCACGCCAAT 61.639 57.895 0.00 0.00 32.93 3.16
4710 4854 7.826918 AGTCAGTTACAATAGTAGGAGATCC 57.173 40.000 0.00 0.00 0.00 3.36
4788 4932 7.882791 TGATTGTTGTTCTGTATGTTGTCCTAT 59.117 33.333 0.00 0.00 0.00 2.57
4803 4947 6.073003 GCTAGCCTATGGTATGATTGTTGTTC 60.073 42.308 2.29 0.00 0.00 3.18
4840 4988 2.121538 CCACGAGATCGGAGAGGCA 61.122 63.158 7.22 0.00 43.63 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.