Multiple sequence alignment - TraesCS5A01G370200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G370200 chr5A 100.000 3269 0 0 1 3269 569792297 569795565 0.000000e+00 6037
1 TraesCS5A01G370200 chr5D 90.650 3187 182 50 152 3266 450576761 450579903 0.000000e+00 4128
2 TraesCS5A01G370200 chr5D 88.040 301 34 1 1484 1782 447508363 447508663 4.010000e-94 355
3 TraesCS5A01G370200 chr5D 92.405 79 6 0 247 325 450576555 450576477 2.670000e-21 113
4 TraesCS5A01G370200 chr5B 95.264 1668 50 10 790 2454 550488432 550490073 0.000000e+00 2615
5 TraesCS5A01G370200 chr5B 81.222 442 34 18 2409 2841 550490074 550490475 8.810000e-81 311
6 TraesCS5A01G370200 chr2D 86.203 935 126 3 1282 2214 372224313 372225246 0.000000e+00 1009
7 TraesCS5A01G370200 chr2D 83.298 940 131 17 1285 2215 372015589 372014667 0.000000e+00 843
8 TraesCS5A01G370200 chr2A 86.203 935 126 3 1282 2214 502934131 502935064 0.000000e+00 1009
9 TraesCS5A01G370200 chr2A 84.199 943 128 12 1284 2215 502825839 502824907 0.000000e+00 896
10 TraesCS5A01G370200 chr2B 85.577 936 130 5 1282 2214 441792920 441793853 0.000000e+00 976
11 TraesCS5A01G370200 chr2B 83.422 941 137 10 1285 2215 441480098 441479167 0.000000e+00 856


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G370200 chr5A 569792297 569795565 3268 False 6037 6037 100.000 1 3269 1 chr5A.!!$F1 3268
1 TraesCS5A01G370200 chr5D 450576761 450579903 3142 False 4128 4128 90.650 152 3266 1 chr5D.!!$F2 3114
2 TraesCS5A01G370200 chr5B 550488432 550490475 2043 False 1463 2615 88.243 790 2841 2 chr5B.!!$F1 2051
3 TraesCS5A01G370200 chr2D 372224313 372225246 933 False 1009 1009 86.203 1282 2214 1 chr2D.!!$F1 932
4 TraesCS5A01G370200 chr2D 372014667 372015589 922 True 843 843 83.298 1285 2215 1 chr2D.!!$R1 930
5 TraesCS5A01G370200 chr2A 502934131 502935064 933 False 1009 1009 86.203 1282 2214 1 chr2A.!!$F1 932
6 TraesCS5A01G370200 chr2A 502824907 502825839 932 True 896 896 84.199 1284 2215 1 chr2A.!!$R1 931
7 TraesCS5A01G370200 chr2B 441792920 441793853 933 False 976 976 85.577 1282 2214 1 chr2B.!!$F1 932
8 TraesCS5A01G370200 chr2B 441479167 441480098 931 True 856 856 83.422 1285 2215 1 chr2B.!!$R1 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.096454 GGCTACTTTAACGCAAGCGG 59.904 55.0 19.30 2.79 44.69 5.52 F
446 449 0.249120 TCTGCGATCCAATTGACCGT 59.751 50.0 7.12 0.00 0.00 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1109 1136 4.363990 CCGTCTGCCAGTCGCTGT 62.364 66.667 5.82 0.0 38.78 4.40 R
2276 2321 3.877559 TGTAGTAACACCGAGCTAGCTA 58.122 45.455 19.38 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.409643 GTTTGGTACGAATCATGAGATGG 57.590 43.478 0.09 0.00 33.90 3.51
37 38 3.751479 TGGTACGAATCATGAGATGGG 57.249 47.619 0.09 0.00 33.90 4.00
38 39 2.224281 TGGTACGAATCATGAGATGGGC 60.224 50.000 0.09 0.00 33.90 5.36
39 40 2.417719 GTACGAATCATGAGATGGGCC 58.582 52.381 0.09 0.00 33.90 5.80
40 41 0.839277 ACGAATCATGAGATGGGCCA 59.161 50.000 9.61 9.61 33.90 5.36
41 42 1.212688 ACGAATCATGAGATGGGCCAA 59.787 47.619 11.89 0.00 33.90 4.52
42 43 1.605710 CGAATCATGAGATGGGCCAAC 59.394 52.381 11.89 8.41 33.90 3.77
43 44 2.658285 GAATCATGAGATGGGCCAACA 58.342 47.619 11.89 12.19 33.90 3.33
44 45 3.228453 GAATCATGAGATGGGCCAACAT 58.772 45.455 11.89 14.05 33.90 2.71
45 46 2.832643 TCATGAGATGGGCCAACATT 57.167 45.000 11.89 0.00 0.00 2.71
46 47 2.658285 TCATGAGATGGGCCAACATTC 58.342 47.619 11.89 2.86 0.00 2.67
47 48 2.242965 TCATGAGATGGGCCAACATTCT 59.757 45.455 11.89 9.07 0.00 2.40
48 49 2.133281 TGAGATGGGCCAACATTCTG 57.867 50.000 11.89 0.00 0.00 3.02
49 50 0.743097 GAGATGGGCCAACATTCTGC 59.257 55.000 11.89 0.00 0.00 4.26
50 51 1.033746 AGATGGGCCAACATTCTGCG 61.034 55.000 11.89 0.00 0.00 5.18
51 52 2.008268 GATGGGCCAACATTCTGCGG 62.008 60.000 11.89 0.00 0.00 5.69
52 53 4.133796 GGGCCAACATTCTGCGGC 62.134 66.667 4.39 0.00 38.22 6.53
53 54 4.481112 GGCCAACATTCTGCGGCG 62.481 66.667 0.51 0.51 39.41 6.46
54 55 3.430862 GCCAACATTCTGCGGCGA 61.431 61.111 12.98 0.00 30.96 5.54
55 56 2.764314 GCCAACATTCTGCGGCGAT 61.764 57.895 12.98 0.00 30.96 4.58
56 57 1.802636 CCAACATTCTGCGGCGATT 59.197 52.632 12.98 0.00 0.00 3.34
57 58 0.171007 CCAACATTCTGCGGCGATTT 59.829 50.000 12.98 0.00 0.00 2.17
58 59 1.538276 CAACATTCTGCGGCGATTTC 58.462 50.000 12.98 0.00 0.00 2.17
59 60 1.131126 CAACATTCTGCGGCGATTTCT 59.869 47.619 12.98 0.00 0.00 2.52
60 61 1.453155 ACATTCTGCGGCGATTTCTT 58.547 45.000 12.98 0.00 0.00 2.52
61 62 1.812571 ACATTCTGCGGCGATTTCTTT 59.187 42.857 12.98 0.00 0.00 2.52
62 63 2.228822 ACATTCTGCGGCGATTTCTTTT 59.771 40.909 12.98 0.00 0.00 2.27
63 64 2.330231 TTCTGCGGCGATTTCTTTTG 57.670 45.000 12.98 0.00 0.00 2.44
64 65 1.518325 TCTGCGGCGATTTCTTTTGA 58.482 45.000 12.98 0.00 0.00 2.69
65 66 1.196808 TCTGCGGCGATTTCTTTTGAC 59.803 47.619 12.98 0.00 0.00 3.18
66 67 1.197721 CTGCGGCGATTTCTTTTGACT 59.802 47.619 12.98 0.00 0.00 3.41
67 68 1.196808 TGCGGCGATTTCTTTTGACTC 59.803 47.619 12.98 0.00 0.00 3.36
68 69 1.786928 GCGGCGATTTCTTTTGACTCG 60.787 52.381 12.98 0.00 37.10 4.18
69 70 1.724623 CGGCGATTTCTTTTGACTCGA 59.275 47.619 0.00 0.00 36.51 4.04
70 71 2.222596 CGGCGATTTCTTTTGACTCGAG 60.223 50.000 11.84 11.84 36.51 4.04
71 72 2.993899 GGCGATTTCTTTTGACTCGAGA 59.006 45.455 21.68 0.00 36.51 4.04
72 73 3.432252 GGCGATTTCTTTTGACTCGAGAA 59.568 43.478 21.68 3.67 36.51 2.87
73 74 4.434857 GGCGATTTCTTTTGACTCGAGAAG 60.435 45.833 21.68 12.27 36.51 2.85
74 75 4.150804 GCGATTTCTTTTGACTCGAGAAGT 59.849 41.667 21.68 0.00 42.42 3.01
75 76 5.333416 GCGATTTCTTTTGACTCGAGAAGTT 60.333 40.000 21.68 0.00 38.74 2.66
76 77 6.128902 GCGATTTCTTTTGACTCGAGAAGTTA 60.129 38.462 21.68 5.34 38.74 2.24
77 78 7.568861 GCGATTTCTTTTGACTCGAGAAGTTAA 60.569 37.037 21.68 10.86 38.74 2.01
78 79 8.273557 CGATTTCTTTTGACTCGAGAAGTTAAA 58.726 33.333 21.68 9.64 40.55 1.52
79 80 9.587461 GATTTCTTTTGACTCGAGAAGTTAAAG 57.413 33.333 21.68 18.18 42.41 1.85
80 81 7.478520 TTCTTTTGACTCGAGAAGTTAAAGG 57.521 36.000 21.68 7.77 42.41 3.11
81 82 5.465724 TCTTTTGACTCGAGAAGTTAAAGGC 59.534 40.000 21.68 0.00 42.41 4.35
82 83 4.602340 TTGACTCGAGAAGTTAAAGGCT 57.398 40.909 21.68 0.00 38.74 4.58
83 84 5.717078 TTGACTCGAGAAGTTAAAGGCTA 57.283 39.130 21.68 0.00 38.74 3.93
84 85 5.056894 TGACTCGAGAAGTTAAAGGCTAC 57.943 43.478 21.68 0.00 38.74 3.58
85 86 4.765856 TGACTCGAGAAGTTAAAGGCTACT 59.234 41.667 21.68 0.00 38.74 2.57
86 87 5.243283 TGACTCGAGAAGTTAAAGGCTACTT 59.757 40.000 21.68 0.85 38.74 2.24
87 88 6.157904 GACTCGAGAAGTTAAAGGCTACTTT 58.842 40.000 21.68 0.00 43.23 2.66
88 89 7.040201 TGACTCGAGAAGTTAAAGGCTACTTTA 60.040 37.037 21.68 0.00 45.02 1.85
96 97 3.554259 AAAGGCTACTTTAACGCAAGC 57.446 42.857 0.00 0.00 44.79 4.01
97 98 1.076332 AGGCTACTTTAACGCAAGCG 58.924 50.000 13.50 13.50 46.03 4.68
98 99 0.096454 GGCTACTTTAACGCAAGCGG 59.904 55.000 19.30 2.79 44.69 5.52
99 100 0.520619 GCTACTTTAACGCAAGCGGC 60.521 55.000 19.30 5.89 44.69 6.53
100 101 1.076332 CTACTTTAACGCAAGCGGCT 58.924 50.000 19.30 0.00 44.69 5.52
101 102 1.463444 CTACTTTAACGCAAGCGGCTT 59.537 47.619 19.30 9.94 44.69 4.35
102 103 0.666374 ACTTTAACGCAAGCGGCTTT 59.334 45.000 19.30 6.71 44.69 3.51
103 104 1.874872 ACTTTAACGCAAGCGGCTTTA 59.125 42.857 19.30 5.71 44.69 1.85
104 105 2.239201 CTTTAACGCAAGCGGCTTTAC 58.761 47.619 19.30 7.46 44.69 2.01
105 106 0.518195 TTAACGCAAGCGGCTTTACC 59.482 50.000 19.30 3.72 44.69 2.85
106 107 0.603172 TAACGCAAGCGGCTTTACCA 60.603 50.000 19.30 0.00 44.69 3.25
107 108 1.241315 AACGCAAGCGGCTTTACCAT 61.241 50.000 19.30 0.00 44.69 3.55
108 109 1.241315 ACGCAAGCGGCTTTACCATT 61.241 50.000 19.30 0.00 44.69 3.16
109 110 0.730265 CGCAAGCGGCTTTACCATTA 59.270 50.000 13.53 0.00 41.67 1.90
110 111 1.333619 CGCAAGCGGCTTTACCATTAT 59.666 47.619 13.53 0.00 41.67 1.28
111 112 2.731217 GCAAGCGGCTTTACCATTATG 58.269 47.619 13.53 0.00 39.03 1.90
112 113 2.357637 GCAAGCGGCTTTACCATTATGA 59.642 45.455 13.53 0.00 39.03 2.15
113 114 3.181491 GCAAGCGGCTTTACCATTATGAA 60.181 43.478 13.53 0.00 39.03 2.57
114 115 4.676723 GCAAGCGGCTTTACCATTATGAAA 60.677 41.667 13.53 0.00 39.03 2.69
115 116 4.632538 AGCGGCTTTACCATTATGAAAC 57.367 40.909 0.00 0.00 39.03 2.78
116 117 4.270008 AGCGGCTTTACCATTATGAAACT 58.730 39.130 0.00 0.00 39.03 2.66
117 118 5.433526 AGCGGCTTTACCATTATGAAACTA 58.566 37.500 0.00 0.00 39.03 2.24
118 119 5.883673 AGCGGCTTTACCATTATGAAACTAA 59.116 36.000 0.00 0.00 39.03 2.24
119 120 6.546034 AGCGGCTTTACCATTATGAAACTAAT 59.454 34.615 0.00 0.00 39.03 1.73
120 121 6.636850 GCGGCTTTACCATTATGAAACTAATG 59.363 38.462 0.00 0.00 39.03 1.90
121 122 7.681065 GCGGCTTTACCATTATGAAACTAATGT 60.681 37.037 0.00 0.00 37.38 2.71
122 123 7.643764 CGGCTTTACCATTATGAAACTAATGTG 59.356 37.037 0.00 0.00 37.38 3.21
123 124 7.920682 GGCTTTACCATTATGAAACTAATGTGG 59.079 37.037 0.00 0.00 37.38 4.17
124 125 8.466798 GCTTTACCATTATGAAACTAATGTGGT 58.533 33.333 0.00 0.00 37.38 4.16
129 130 8.902806 ACCATTATGAAACTAATGTGGTATGTG 58.097 33.333 0.00 0.00 37.38 3.21
130 131 8.352201 CCATTATGAAACTAATGTGGTATGTGG 58.648 37.037 0.00 0.00 37.38 4.17
131 132 8.902806 CATTATGAAACTAATGTGGTATGTGGT 58.097 33.333 0.00 0.00 35.36 4.16
132 133 8.871629 TTATGAAACTAATGTGGTATGTGGTT 57.128 30.769 0.00 0.00 0.00 3.67
133 134 6.567687 TGAAACTAATGTGGTATGTGGTTG 57.432 37.500 0.00 0.00 0.00 3.77
134 135 6.065374 TGAAACTAATGTGGTATGTGGTTGT 58.935 36.000 0.00 0.00 0.00 3.32
135 136 6.205853 TGAAACTAATGTGGTATGTGGTTGTC 59.794 38.462 0.00 0.00 0.00 3.18
136 137 5.235850 ACTAATGTGGTATGTGGTTGTCA 57.764 39.130 0.00 0.00 0.00 3.58
137 138 5.626142 ACTAATGTGGTATGTGGTTGTCAA 58.374 37.500 0.00 0.00 0.00 3.18
138 139 6.065374 ACTAATGTGGTATGTGGTTGTCAAA 58.935 36.000 0.00 0.00 0.00 2.69
139 140 5.860941 AATGTGGTATGTGGTTGTCAAAA 57.139 34.783 0.00 0.00 0.00 2.44
140 141 4.909696 TGTGGTATGTGGTTGTCAAAAG 57.090 40.909 0.00 0.00 0.00 2.27
141 142 4.527944 TGTGGTATGTGGTTGTCAAAAGA 58.472 39.130 0.00 0.00 0.00 2.52
142 143 4.950475 TGTGGTATGTGGTTGTCAAAAGAA 59.050 37.500 0.00 0.00 0.00 2.52
143 144 5.419155 TGTGGTATGTGGTTGTCAAAAGAAA 59.581 36.000 0.00 0.00 0.00 2.52
144 145 6.097554 TGTGGTATGTGGTTGTCAAAAGAAAT 59.902 34.615 0.00 0.00 0.00 2.17
145 146 6.640907 GTGGTATGTGGTTGTCAAAAGAAATC 59.359 38.462 0.00 0.00 0.00 2.17
146 147 6.322456 TGGTATGTGGTTGTCAAAAGAAATCA 59.678 34.615 0.00 0.00 0.00 2.57
147 148 7.147828 TGGTATGTGGTTGTCAAAAGAAATCAA 60.148 33.333 0.00 0.00 0.00 2.57
148 149 7.382218 GGTATGTGGTTGTCAAAAGAAATCAAG 59.618 37.037 0.00 0.00 0.00 3.02
149 150 5.659463 TGTGGTTGTCAAAAGAAATCAAGG 58.341 37.500 0.00 0.00 0.00 3.61
150 151 5.049828 GTGGTTGTCAAAAGAAATCAAGGG 58.950 41.667 0.00 0.00 0.00 3.95
158 159 6.887002 GTCAAAAGAAATCAAGGGATCCTACT 59.113 38.462 12.58 0.00 31.13 2.57
160 161 4.429854 AGAAATCAAGGGATCCTACTGC 57.570 45.455 12.58 0.00 31.13 4.40
164 165 6.274200 AGAAATCAAGGGATCCTACTGCATAT 59.726 38.462 12.58 0.00 31.13 1.78
168 169 1.912043 GGGATCCTACTGCATATGCCT 59.088 52.381 24.54 12.22 41.18 4.75
182 183 9.799106 ACTGCATATGCCTTATAATTAAAGTCT 57.201 29.630 24.54 0.00 41.18 3.24
219 221 8.840200 ATTGAGACCCTAGAGTTGTCTAAATA 57.160 34.615 10.26 0.00 38.07 1.40
226 228 8.053355 ACCCTAGAGTTGTCTAAATAATTTGGG 58.947 37.037 0.00 0.00 35.66 4.12
227 229 7.502561 CCCTAGAGTTGTCTAAATAATTTGGGG 59.497 40.741 0.00 0.00 34.73 4.96
229 231 5.656859 AGAGTTGTCTAAATAATTTGGGGCC 59.343 40.000 0.00 0.00 0.00 5.80
245 247 1.103398 GGCCAAATGAGATGACCCGG 61.103 60.000 0.00 0.00 0.00 5.73
251 253 0.744414 ATGAGATGACCCGGCGTTTG 60.744 55.000 6.01 0.00 0.00 2.93
258 260 3.053896 CCCGGCGTTTGAGAACCC 61.054 66.667 6.01 0.00 31.93 4.11
300 302 7.284944 AGAGGCTTTTTAATTCATGAGATCCTG 59.715 37.037 0.00 0.00 0.00 3.86
301 303 7.121382 AGGCTTTTTAATTCATGAGATCCTGA 58.879 34.615 0.00 0.00 0.00 3.86
325 327 8.037758 TGAAAATCAGGAACAAAGCTACAAAAA 58.962 29.630 0.00 0.00 0.00 1.94
348 350 4.497291 AAAATACCGCCTTCCACTATGA 57.503 40.909 0.00 0.00 0.00 2.15
349 351 3.753294 AATACCGCCTTCCACTATGAG 57.247 47.619 0.00 0.00 0.00 2.90
350 352 2.154567 TACCGCCTTCCACTATGAGT 57.845 50.000 0.00 0.00 0.00 3.41
351 353 2.154567 ACCGCCTTCCACTATGAGTA 57.845 50.000 0.00 0.00 0.00 2.59
353 355 2.032620 CCGCCTTCCACTATGAGTAGT 58.967 52.381 0.00 0.00 41.84 2.73
364 366 5.573337 ACTATGAGTAGTGGTAACCGAAC 57.427 43.478 0.00 0.00 39.66 3.95
385 388 7.307101 CCGAACATTTTGTTAATTGGGTTCAAG 60.307 37.037 0.00 0.00 41.28 3.02
430 433 3.780902 TGTGCGTGTATGTAAGGATCTG 58.219 45.455 0.00 0.00 0.00 2.90
435 438 3.914966 CGTGTATGTAAGGATCTGCGATC 59.085 47.826 9.24 9.24 0.00 3.69
436 439 4.238514 GTGTATGTAAGGATCTGCGATCC 58.761 47.826 22.34 22.34 38.47 3.36
445 448 1.528586 GATCTGCGATCCAATTGACCG 59.471 52.381 7.12 8.23 0.00 4.79
446 449 0.249120 TCTGCGATCCAATTGACCGT 59.751 50.000 7.12 0.00 0.00 4.83
447 450 1.478916 TCTGCGATCCAATTGACCGTA 59.521 47.619 7.12 5.93 0.00 4.02
448 451 1.860950 CTGCGATCCAATTGACCGTAG 59.139 52.381 7.12 11.53 0.00 3.51
449 452 1.206132 TGCGATCCAATTGACCGTAGT 59.794 47.619 7.12 0.00 0.00 2.73
450 453 2.427812 TGCGATCCAATTGACCGTAGTA 59.572 45.455 7.12 0.00 0.00 1.82
464 467 7.741027 TGACCGTAGTAGATTCTAATACCAG 57.259 40.000 20.03 15.52 0.00 4.00
467 470 6.776603 ACCGTAGTAGATTCTAATACCAGCTT 59.223 38.462 20.03 3.61 0.00 3.74
468 471 7.287235 ACCGTAGTAGATTCTAATACCAGCTTT 59.713 37.037 20.03 2.29 0.00 3.51
470 473 8.136165 CGTAGTAGATTCTAATACCAGCTTTGT 58.864 37.037 20.03 0.00 0.00 2.83
472 475 7.501844 AGTAGATTCTAATACCAGCTTTGTCC 58.498 38.462 0.00 0.00 0.00 4.02
473 476 6.313519 AGATTCTAATACCAGCTTTGTCCA 57.686 37.500 0.00 0.00 0.00 4.02
477 480 5.253330 TCTAATACCAGCTTTGTCCAAAGG 58.747 41.667 18.58 8.07 45.85 3.11
478 481 2.286365 TACCAGCTTTGTCCAAAGGG 57.714 50.000 18.58 14.69 45.85 3.95
479 482 1.115326 ACCAGCTTTGTCCAAAGGGC 61.115 55.000 18.58 8.45 45.85 5.19
502 511 1.008361 AATGCCAACGCGACAAATGC 61.008 50.000 15.93 6.99 38.08 3.56
505 514 1.608093 GCCAACGCGACAAATGCAAG 61.608 55.000 15.93 0.00 0.00 4.01
508 517 0.380378 AACGCGACAAATGCAAGTGT 59.620 45.000 15.93 5.38 0.00 3.55
537 546 5.538118 AGACGTAGAATGACAACATGACAA 58.462 37.500 0.00 0.00 36.79 3.18
577 586 2.231235 GGCCTGTGTTGGAGTATTTTGG 59.769 50.000 0.00 0.00 0.00 3.28
582 591 6.071616 GCCTGTGTTGGAGTATTTTGGAATTA 60.072 38.462 0.00 0.00 0.00 1.40
585 594 8.642935 TGTGTTGGAGTATTTTGGAATTATGA 57.357 30.769 0.00 0.00 0.00 2.15
628 638 6.322201 TGGCATCCTTTTCTTATCCTTGAATC 59.678 38.462 0.00 0.00 0.00 2.52
632 642 8.782144 CATCCTTTTCTTATCCTTGAATCTAGC 58.218 37.037 0.00 0.00 0.00 3.42
659 669 6.654161 ACATGTGGGTCTAGATACGTATAGAC 59.346 42.308 22.28 22.28 44.59 2.59
662 672 7.229308 TGTGGGTCTAGATACGTATAGACAAT 58.771 38.462 27.62 3.06 46.24 2.71
669 679 6.712241 AGATACGTATAGACAATGCATTGC 57.288 37.500 33.94 26.14 41.38 3.56
692 702 8.072321 TGCTATCCAGGAGAGATATTTATGAC 57.928 38.462 15.85 0.00 0.00 3.06
694 704 8.703743 GCTATCCAGGAGAGATATTTATGACAT 58.296 37.037 15.85 0.00 0.00 3.06
726 736 8.905103 TCTTACCAAAAAGAAGAAGAAAAACG 57.095 30.769 0.00 0.00 32.59 3.60
728 738 6.944557 ACCAAAAAGAAGAAGAAAAACGTG 57.055 33.333 0.00 0.00 0.00 4.49
730 740 5.220397 CCAAAAAGAAGAAGAAAAACGTGCC 60.220 40.000 0.00 0.00 0.00 5.01
731 741 4.712122 AAAGAAGAAGAAAAACGTGCCA 57.288 36.364 0.00 0.00 0.00 4.92
732 742 3.971032 AGAAGAAGAAAAACGTGCCAG 57.029 42.857 0.00 0.00 0.00 4.85
733 743 3.541632 AGAAGAAGAAAAACGTGCCAGA 58.458 40.909 0.00 0.00 0.00 3.86
734 744 3.945285 AGAAGAAGAAAAACGTGCCAGAA 59.055 39.130 0.00 0.00 0.00 3.02
735 745 4.398044 AGAAGAAGAAAAACGTGCCAGAAA 59.602 37.500 0.00 0.00 0.00 2.52
760 770 4.777140 AAAAGAAGAAAAACGCATGTGC 57.223 36.364 6.08 0.00 37.78 4.57
770 780 0.743688 ACGCATGTGCTTTTTCACCA 59.256 45.000 6.08 0.00 39.32 4.17
774 784 1.066908 CATGTGCTTTTTCACCACGGT 59.933 47.619 0.00 0.00 36.17 4.83
775 785 0.736053 TGTGCTTTTTCACCACGGTC 59.264 50.000 0.00 0.00 36.17 4.79
776 786 0.316689 GTGCTTTTTCACCACGGTCG 60.317 55.000 0.00 0.00 0.00 4.79
777 787 1.281656 GCTTTTTCACCACGGTCGG 59.718 57.895 0.00 0.00 0.00 4.79
778 788 1.161563 GCTTTTTCACCACGGTCGGA 61.162 55.000 4.04 0.00 0.00 4.55
780 790 1.161563 TTTTTCACCACGGTCGGAGC 61.162 55.000 0.00 0.00 0.00 4.70
986 1010 2.332159 GCGAGCTCGGTAGGTAGC 59.668 66.667 35.10 13.88 43.07 3.58
988 1012 2.178890 CGAGCTCGGTAGGTAGCGT 61.179 63.158 28.40 0.00 46.22 5.07
989 1013 0.877649 CGAGCTCGGTAGGTAGCGTA 60.878 60.000 28.40 0.00 46.22 4.42
990 1014 0.867086 GAGCTCGGTAGGTAGCGTAG 59.133 60.000 0.00 6.21 46.22 3.51
991 1015 0.534652 AGCTCGGTAGGTAGCGTAGG 60.535 60.000 8.33 2.66 46.22 3.18
992 1016 0.817229 GCTCGGTAGGTAGCGTAGGT 60.817 60.000 8.33 0.00 46.22 3.08
993 1017 1.541233 GCTCGGTAGGTAGCGTAGGTA 60.541 57.143 8.33 0.00 46.22 3.08
994 1018 2.411904 CTCGGTAGGTAGCGTAGGTAG 58.588 57.143 8.33 0.00 42.96 3.18
1162 1189 4.265056 GCACCAACGACACCCCCT 62.265 66.667 0.00 0.00 0.00 4.79
1209 1236 3.181397 CCAGAACAACAACAACAAGCTG 58.819 45.455 0.00 0.00 0.00 4.24
2211 2253 2.271821 CCCATGGACATGACGCCA 59.728 61.111 15.22 4.32 41.20 5.69
2274 2319 2.665395 GCAGCGCGGCTAGATGATG 61.665 63.158 25.57 3.22 36.40 3.07
2275 2320 1.006922 CAGCGCGGCTAGATGATGA 60.007 57.895 8.83 0.00 36.40 2.92
2276 2321 0.389556 CAGCGCGGCTAGATGATGAT 60.390 55.000 8.83 0.00 36.40 2.45
2287 2337 5.422666 CTAGATGATGATAGCTAGCTCGG 57.577 47.826 23.26 0.00 30.88 4.63
2431 2484 4.703379 TTGGGCCAAATTCTTTGTGAAT 57.297 36.364 18.51 0.00 46.49 2.57
2435 2488 6.229733 TGGGCCAAATTCTTTGTGAATAAAG 58.770 36.000 2.13 0.00 43.99 1.85
2522 2625 2.102749 CGAAATGGGTGGCATGCG 59.897 61.111 12.44 0.00 0.00 4.73
2541 2644 2.663119 GCGTTTGGATTGTTCTTGCATC 59.337 45.455 0.00 0.00 0.00 3.91
2556 2659 1.922570 GCATCTGCAGCAATTCCTTG 58.077 50.000 9.47 0.00 41.59 3.61
2582 2693 4.749598 GGTGAAATGAATGAAACCAACCAC 59.250 41.667 0.00 0.00 0.00 4.16
2636 2754 2.295885 GAGGTCAGAAGCATGATTGGG 58.704 52.381 0.00 0.00 0.00 4.12
2638 2756 2.042162 AGGTCAGAAGCATGATTGGGTT 59.958 45.455 0.00 0.00 0.00 4.11
2640 2758 2.165030 GTCAGAAGCATGATTGGGTTGG 59.835 50.000 0.00 0.00 0.00 3.77
2641 2759 2.173519 CAGAAGCATGATTGGGTTGGT 58.826 47.619 0.00 0.00 0.00 3.67
2642 2760 2.094390 CAGAAGCATGATTGGGTTGGTG 60.094 50.000 0.00 0.00 0.00 4.17
2643 2761 0.609662 AAGCATGATTGGGTTGGTGC 59.390 50.000 0.00 0.00 0.00 5.01
2696 2814 3.197549 CCAGGAGAAGAGAAAGGGAGAAG 59.802 52.174 0.00 0.00 0.00 2.85
2762 2880 1.796459 CATTTCTGCTGCAACTTTGGC 59.204 47.619 3.02 0.00 0.00 4.52
2796 2922 3.228017 TGCGTCCGTCCCTGTGAA 61.228 61.111 0.00 0.00 0.00 3.18
2797 2923 2.264794 GCGTCCGTCCCTGTGAAT 59.735 61.111 0.00 0.00 0.00 2.57
2798 2924 2.100631 GCGTCCGTCCCTGTGAATG 61.101 63.158 0.00 0.00 0.00 2.67
2799 2925 1.589630 CGTCCGTCCCTGTGAATGA 59.410 57.895 0.00 0.00 0.00 2.57
2809 2935 3.012518 CCCTGTGAATGATGAAGGACAC 58.987 50.000 0.00 0.00 0.00 3.67
2821 2947 2.079925 GAAGGACACAGATTGCCACTC 58.920 52.381 0.00 0.00 0.00 3.51
2858 2992 7.800380 GTGATAATCATGCAGTAAAGATTTCGG 59.200 37.037 0.00 0.00 33.22 4.30
2864 3005 4.545610 TGCAGTAAAGATTTCGGCAAAAG 58.454 39.130 0.00 0.00 0.00 2.27
2881 3023 4.089923 GCAAAAGCACAACGGAATGTTATC 59.910 41.667 0.00 0.00 39.29 1.75
2887 3029 1.330521 CAACGGAATGTTATCTGGCGG 59.669 52.381 0.00 0.00 39.29 6.13
2906 3048 2.456287 GAAGTCAGCTGCGAAGGGGT 62.456 60.000 9.47 0.00 0.00 4.95
2907 3049 2.738213 AAGTCAGCTGCGAAGGGGTG 62.738 60.000 9.47 0.00 0.00 4.61
2909 3051 4.335647 CAGCTGCGAAGGGGTGGT 62.336 66.667 0.00 0.00 0.00 4.16
2910 3052 2.606519 AGCTGCGAAGGGGTGGTA 60.607 61.111 0.00 0.00 0.00 3.25
2912 3055 1.745489 GCTGCGAAGGGGTGGTAAG 60.745 63.158 0.00 0.00 0.00 2.34
2915 3058 2.975536 CGAAGGGGTGGTAAGCGA 59.024 61.111 0.00 0.00 0.00 4.93
2929 3072 0.240945 AAGCGAACGCATTTTCCTGG 59.759 50.000 20.66 0.00 44.88 4.45
2930 3073 1.801512 GCGAACGCATTTTCCTGGC 60.802 57.895 14.26 0.00 41.49 4.85
2933 3076 0.733909 GAACGCATTTTCCTGGCAGC 60.734 55.000 9.56 0.00 0.00 5.25
2934 3077 2.158561 AACGCATTTTCCTGGCAGCC 62.159 55.000 9.56 3.66 0.00 4.85
2961 3108 1.970917 GCGAGATCAAACGGTGGCAG 61.971 60.000 0.00 0.00 0.00 4.85
2962 3109 0.670546 CGAGATCAAACGGTGGCAGT 60.671 55.000 0.00 0.00 0.00 4.40
2970 3117 3.695060 TCAAACGGTGGCAGTTTTAGAAA 59.305 39.130 2.43 0.00 39.50 2.52
2971 3118 4.158025 TCAAACGGTGGCAGTTTTAGAAAA 59.842 37.500 2.43 0.00 39.50 2.29
3006 3153 5.798125 TTCTCTGAGAGAAACTGTCATGT 57.202 39.130 21.70 0.00 44.37 3.21
3011 3158 5.755375 TCTGAGAGAAACTGTCATGTTGTTC 59.245 40.000 0.00 0.00 33.39 3.18
3016 3163 6.599244 AGAGAAACTGTCATGTTGTTCTGAAA 59.401 34.615 0.00 0.00 0.00 2.69
3045 3193 2.640826 CAACCCTCCTACACCTAAACCA 59.359 50.000 0.00 0.00 0.00 3.67
3046 3194 2.263545 ACCCTCCTACACCTAAACCAC 58.736 52.381 0.00 0.00 0.00 4.16
3047 3195 1.558294 CCCTCCTACACCTAAACCACC 59.442 57.143 0.00 0.00 0.00 4.61
3053 3201 5.535029 TCCTACACCTAAACCACCATCTAT 58.465 41.667 0.00 0.00 0.00 1.98
3055 3203 6.552350 TCCTACACCTAAACCACCATCTATAC 59.448 42.308 0.00 0.00 0.00 1.47
3059 3207 6.110707 CACCTAAACCACCATCTATACGTTT 58.889 40.000 0.00 0.00 0.00 3.60
3076 3224 0.842635 TTTGCAAATGCCAACCCCTT 59.157 45.000 8.05 0.00 41.18 3.95
3078 3226 0.762082 TGCAAATGCCAACCCCTTCA 60.762 50.000 2.46 0.00 41.18 3.02
3079 3227 0.037046 GCAAATGCCAACCCCTTCAG 60.037 55.000 0.00 0.00 34.31 3.02
3080 3228 0.037046 CAAATGCCAACCCCTTCAGC 60.037 55.000 0.00 0.00 0.00 4.26
3081 3229 1.535204 AAATGCCAACCCCTTCAGCG 61.535 55.000 0.00 0.00 0.00 5.18
3082 3230 2.424842 AATGCCAACCCCTTCAGCGA 62.425 55.000 0.00 0.00 0.00 4.93
3083 3231 2.747855 GCCAACCCCTTCAGCGAG 60.748 66.667 0.00 0.00 0.00 5.03
3084 3232 2.747855 CCAACCCCTTCAGCGAGC 60.748 66.667 0.00 0.00 0.00 5.03
3085 3233 2.032528 CAACCCCTTCAGCGAGCA 59.967 61.111 0.00 0.00 0.00 4.26
3087 3235 1.150536 AACCCCTTCAGCGAGCAAA 59.849 52.632 0.00 0.00 0.00 3.68
3088 3236 1.172812 AACCCCTTCAGCGAGCAAAC 61.173 55.000 0.00 0.00 0.00 2.93
3107 3255 1.359459 CGTTCGCCAGTTAAGAGGGC 61.359 60.000 0.00 0.00 44.27 5.19
3114 3262 1.893137 CCAGTTAAGAGGGCCCAAAAC 59.107 52.381 27.56 20.74 0.00 2.43
3120 3268 1.612676 AGAGGGCCCAAAACGTAAAC 58.387 50.000 27.56 1.67 0.00 2.01
3121 3269 0.599558 GAGGGCCCAAAACGTAAACC 59.400 55.000 27.56 0.00 0.00 3.27
3122 3270 1.174078 AGGGCCCAAAACGTAAACCG 61.174 55.000 27.56 0.00 44.03 4.44
3123 3271 1.171549 GGGCCCAAAACGTAAACCGA 61.172 55.000 19.95 0.00 40.70 4.69
3125 3273 0.239082 GCCCAAAACGTAAACCGAGG 59.761 55.000 0.00 0.00 40.70 4.63
3126 3274 1.881591 CCCAAAACGTAAACCGAGGA 58.118 50.000 0.00 0.00 40.70 3.71
3127 3275 2.429478 CCCAAAACGTAAACCGAGGAT 58.571 47.619 0.00 0.00 40.70 3.24
3128 3276 2.160813 CCCAAAACGTAAACCGAGGATG 59.839 50.000 0.00 0.00 40.70 3.51
3129 3277 2.160813 CCAAAACGTAAACCGAGGATGG 59.839 50.000 0.00 0.00 40.70 3.51
3173 3324 6.044171 CCATCTTATTCCCATCTCTTCTCCTT 59.956 42.308 0.00 0.00 0.00 3.36
3192 3343 1.189524 TACTCCCCACCTTGTCCACG 61.190 60.000 0.00 0.00 0.00 4.94
3193 3344 3.901797 CTCCCCACCTTGTCCACGC 62.902 68.421 0.00 0.00 0.00 5.34
3200 3351 2.250939 CCTTGTCCACGCGAGCAAA 61.251 57.895 15.93 0.00 0.00 3.68
3207 3358 1.013596 CCACGCGAGCAAATTATCCA 58.986 50.000 15.93 0.00 0.00 3.41
3208 3359 1.603802 CCACGCGAGCAAATTATCCAT 59.396 47.619 15.93 0.00 0.00 3.41
3211 3362 4.629634 CCACGCGAGCAAATTATCCATATA 59.370 41.667 15.93 0.00 0.00 0.86
3213 3364 4.870426 ACGCGAGCAAATTATCCATATAGG 59.130 41.667 15.93 0.00 39.47 2.57
3218 3369 6.317140 CGAGCAAATTATCCATATAGGCATGT 59.683 38.462 0.00 0.00 37.29 3.21
3225 3376 4.192429 TCCATATAGGCATGTCATGTCG 57.808 45.455 14.26 0.00 40.53 4.35
3229 3380 5.105756 CCATATAGGCATGTCATGTCGTCTA 60.106 44.000 14.26 10.83 40.53 2.59
3266 3417 3.098636 GCGGTCAAAACGATGCTAAATC 58.901 45.455 0.00 0.00 0.00 2.17
3267 3418 3.342269 CGGTCAAAACGATGCTAAATCG 58.658 45.455 6.21 6.21 46.02 3.34
3268 3419 3.061563 CGGTCAAAACGATGCTAAATCGA 59.938 43.478 14.12 0.00 43.59 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.082756 CAAACGCTCACGCAACTCC 60.083 57.895 0.00 0.00 45.53 3.85
1 2 1.082756 CCAAACGCTCACGCAACTC 60.083 57.895 0.00 0.00 45.53 3.01
2 3 0.531090 TACCAAACGCTCACGCAACT 60.531 50.000 0.00 0.00 45.53 3.16
3 4 0.383860 GTACCAAACGCTCACGCAAC 60.384 55.000 0.00 0.00 45.53 4.17
4 5 1.823260 CGTACCAAACGCTCACGCAA 61.823 55.000 0.00 0.00 46.10 4.85
5 6 2.304401 CGTACCAAACGCTCACGCA 61.304 57.895 0.00 0.00 46.10 5.24
6 7 2.468532 CGTACCAAACGCTCACGC 59.531 61.111 0.00 0.00 46.10 5.34
14 15 4.273480 CCCATCTCATGATTCGTACCAAAC 59.727 45.833 0.00 0.00 0.00 2.93
15 16 4.450976 CCCATCTCATGATTCGTACCAAA 58.549 43.478 0.00 0.00 0.00 3.28
16 17 3.744214 GCCCATCTCATGATTCGTACCAA 60.744 47.826 0.00 0.00 0.00 3.67
17 18 2.224281 GCCCATCTCATGATTCGTACCA 60.224 50.000 0.00 0.00 0.00 3.25
18 19 2.417719 GCCCATCTCATGATTCGTACC 58.582 52.381 0.00 0.00 0.00 3.34
19 20 2.224281 TGGCCCATCTCATGATTCGTAC 60.224 50.000 0.00 0.00 0.00 3.67
20 21 2.046292 TGGCCCATCTCATGATTCGTA 58.954 47.619 0.00 0.00 0.00 3.43
21 22 0.839277 TGGCCCATCTCATGATTCGT 59.161 50.000 0.00 0.00 0.00 3.85
22 23 1.605710 GTTGGCCCATCTCATGATTCG 59.394 52.381 0.00 0.00 0.00 3.34
23 24 2.658285 TGTTGGCCCATCTCATGATTC 58.342 47.619 0.00 0.00 0.00 2.52
24 25 2.832643 TGTTGGCCCATCTCATGATT 57.167 45.000 0.00 0.00 0.00 2.57
25 26 3.117246 AGAATGTTGGCCCATCTCATGAT 60.117 43.478 0.00 0.00 0.00 2.45
26 27 2.242965 AGAATGTTGGCCCATCTCATGA 59.757 45.455 0.00 0.00 0.00 3.07
27 28 2.361119 CAGAATGTTGGCCCATCTCATG 59.639 50.000 0.00 0.00 0.00 3.07
28 29 2.662866 CAGAATGTTGGCCCATCTCAT 58.337 47.619 0.00 0.00 0.00 2.90
29 30 1.956636 GCAGAATGTTGGCCCATCTCA 60.957 52.381 0.00 0.00 39.31 3.27
30 31 0.743097 GCAGAATGTTGGCCCATCTC 59.257 55.000 0.00 0.00 39.31 2.75
31 32 1.033746 CGCAGAATGTTGGCCCATCT 61.034 55.000 0.00 0.00 39.31 2.90
32 33 1.434696 CGCAGAATGTTGGCCCATC 59.565 57.895 0.00 0.00 39.31 3.51
33 34 2.053865 CCGCAGAATGTTGGCCCAT 61.054 57.895 0.00 0.00 39.31 4.00
34 35 2.676121 CCGCAGAATGTTGGCCCA 60.676 61.111 0.00 0.00 39.31 5.36
38 39 0.171007 AAATCGCCGCAGAATGTTGG 59.829 50.000 0.00 0.00 39.31 3.77
39 40 1.131126 AGAAATCGCCGCAGAATGTTG 59.869 47.619 0.00 0.00 39.31 3.33
40 41 1.453155 AGAAATCGCCGCAGAATGTT 58.547 45.000 0.00 0.00 39.31 2.71
41 42 1.453155 AAGAAATCGCCGCAGAATGT 58.547 45.000 0.00 0.00 39.31 2.71
42 43 2.549633 AAAGAAATCGCCGCAGAATG 57.450 45.000 0.00 0.00 40.87 2.67
43 44 2.487762 TCAAAAGAAATCGCCGCAGAAT 59.512 40.909 0.00 0.00 0.00 2.40
44 45 1.876799 TCAAAAGAAATCGCCGCAGAA 59.123 42.857 0.00 0.00 0.00 3.02
45 46 1.196808 GTCAAAAGAAATCGCCGCAGA 59.803 47.619 0.00 0.00 0.00 4.26
46 47 1.197721 AGTCAAAAGAAATCGCCGCAG 59.802 47.619 0.00 0.00 0.00 5.18
47 48 1.196808 GAGTCAAAAGAAATCGCCGCA 59.803 47.619 0.00 0.00 0.00 5.69
48 49 1.786928 CGAGTCAAAAGAAATCGCCGC 60.787 52.381 0.00 0.00 0.00 6.53
49 50 1.724623 TCGAGTCAAAAGAAATCGCCG 59.275 47.619 0.00 0.00 33.57 6.46
50 51 2.993899 TCTCGAGTCAAAAGAAATCGCC 59.006 45.455 13.13 0.00 33.57 5.54
51 52 4.150804 ACTTCTCGAGTCAAAAGAAATCGC 59.849 41.667 13.13 0.00 31.20 4.58
52 53 5.830900 ACTTCTCGAGTCAAAAGAAATCG 57.169 39.130 13.13 0.00 31.20 3.34
53 54 9.587461 CTTTAACTTCTCGAGTCAAAAGAAATC 57.413 33.333 13.13 0.00 40.37 2.17
54 55 8.560374 CCTTTAACTTCTCGAGTCAAAAGAAAT 58.440 33.333 13.13 4.01 40.37 2.17
55 56 7.466860 GCCTTTAACTTCTCGAGTCAAAAGAAA 60.467 37.037 13.13 5.54 40.37 2.52
56 57 6.018180 GCCTTTAACTTCTCGAGTCAAAAGAA 60.018 38.462 13.13 0.00 40.37 2.52
57 58 5.465724 GCCTTTAACTTCTCGAGTCAAAAGA 59.534 40.000 13.13 0.00 40.37 2.52
58 59 5.467063 AGCCTTTAACTTCTCGAGTCAAAAG 59.533 40.000 13.13 10.96 39.08 2.27
59 60 5.365619 AGCCTTTAACTTCTCGAGTCAAAA 58.634 37.500 13.13 6.66 37.72 2.44
60 61 4.957296 AGCCTTTAACTTCTCGAGTCAAA 58.043 39.130 13.13 0.00 37.72 2.69
61 62 4.602340 AGCCTTTAACTTCTCGAGTCAA 57.398 40.909 13.13 0.00 37.72 3.18
62 63 4.765856 AGTAGCCTTTAACTTCTCGAGTCA 59.234 41.667 13.13 0.00 37.72 3.41
63 64 5.313520 AGTAGCCTTTAACTTCTCGAGTC 57.686 43.478 13.13 0.00 37.72 3.36
64 65 5.725325 AAGTAGCCTTTAACTTCTCGAGT 57.275 39.130 13.13 0.00 41.47 4.18
74 75 4.377635 CGCTTGCGTTAAAGTAGCCTTTAA 60.378 41.667 6.86 4.39 46.06 1.52
75 76 3.123959 CGCTTGCGTTAAAGTAGCCTTTA 59.876 43.478 6.86 0.00 41.18 1.85
76 77 2.095919 CGCTTGCGTTAAAGTAGCCTTT 60.096 45.455 6.86 0.00 43.30 3.11
77 78 1.463444 CGCTTGCGTTAAAGTAGCCTT 59.537 47.619 6.86 0.00 0.00 4.35
78 79 1.076332 CGCTTGCGTTAAAGTAGCCT 58.924 50.000 6.86 0.00 0.00 4.58
79 80 0.096454 CCGCTTGCGTTAAAGTAGCC 59.904 55.000 13.97 0.00 0.00 3.93
80 81 0.520619 GCCGCTTGCGTTAAAGTAGC 60.521 55.000 13.97 3.82 0.00 3.58
81 82 3.580658 GCCGCTTGCGTTAAAGTAG 57.419 52.632 13.97 0.00 0.00 2.57
82 83 3.120580 GTAAAGCCGCTTGCGTTAAAGTA 60.121 43.478 6.34 0.00 43.87 2.24
83 84 2.350102 GTAAAGCCGCTTGCGTTAAAGT 60.350 45.455 6.34 0.00 43.87 2.66
84 85 2.239201 GTAAAGCCGCTTGCGTTAAAG 58.761 47.619 6.34 0.00 43.87 1.85
85 86 1.069091 GGTAAAGCCGCTTGCGTTAAA 60.069 47.619 6.34 0.00 43.87 1.52
86 87 0.518195 GGTAAAGCCGCTTGCGTTAA 59.482 50.000 6.34 0.00 43.87 2.01
91 92 2.357637 TCATAATGGTAAAGCCGCTTGC 59.642 45.455 6.34 2.95 41.21 4.01
92 93 4.630894 TTCATAATGGTAAAGCCGCTTG 57.369 40.909 6.34 0.00 41.21 4.01
93 94 4.705023 AGTTTCATAATGGTAAAGCCGCTT 59.295 37.500 0.00 0.00 41.21 4.68
94 95 4.270008 AGTTTCATAATGGTAAAGCCGCT 58.730 39.130 0.00 0.00 41.21 5.52
95 96 4.632538 AGTTTCATAATGGTAAAGCCGC 57.367 40.909 0.00 0.00 41.21 6.53
96 97 7.643764 CACATTAGTTTCATAATGGTAAAGCCG 59.356 37.037 10.31 0.00 44.13 5.52
97 98 7.920682 CCACATTAGTTTCATAATGGTAAAGCC 59.079 37.037 10.31 0.00 44.13 4.35
98 99 8.466798 ACCACATTAGTTTCATAATGGTAAAGC 58.533 33.333 10.31 0.00 44.13 3.51
103 104 8.902806 CACATACCACATTAGTTTCATAATGGT 58.097 33.333 10.31 0.00 44.13 3.55
104 105 8.352201 CCACATACCACATTAGTTTCATAATGG 58.648 37.037 10.31 0.00 44.13 3.16
105 106 8.902806 ACCACATACCACATTAGTTTCATAATG 58.097 33.333 5.20 5.20 44.96 1.90
106 107 9.474313 AACCACATACCACATTAGTTTCATAAT 57.526 29.630 0.00 0.00 0.00 1.28
107 108 8.735315 CAACCACATACCACATTAGTTTCATAA 58.265 33.333 0.00 0.00 0.00 1.90
108 109 7.885922 ACAACCACATACCACATTAGTTTCATA 59.114 33.333 0.00 0.00 0.00 2.15
109 110 6.719370 ACAACCACATACCACATTAGTTTCAT 59.281 34.615 0.00 0.00 0.00 2.57
110 111 6.065374 ACAACCACATACCACATTAGTTTCA 58.935 36.000 0.00 0.00 0.00 2.69
111 112 6.205853 TGACAACCACATACCACATTAGTTTC 59.794 38.462 0.00 0.00 0.00 2.78
112 113 6.065374 TGACAACCACATACCACATTAGTTT 58.935 36.000 0.00 0.00 0.00 2.66
113 114 5.626142 TGACAACCACATACCACATTAGTT 58.374 37.500 0.00 0.00 0.00 2.24
114 115 5.235850 TGACAACCACATACCACATTAGT 57.764 39.130 0.00 0.00 0.00 2.24
115 116 6.567687 TTTGACAACCACATACCACATTAG 57.432 37.500 0.00 0.00 0.00 1.73
116 117 6.773200 TCTTTTGACAACCACATACCACATTA 59.227 34.615 0.00 0.00 0.00 1.90
117 118 5.596361 TCTTTTGACAACCACATACCACATT 59.404 36.000 0.00 0.00 0.00 2.71
118 119 5.136828 TCTTTTGACAACCACATACCACAT 58.863 37.500 0.00 0.00 0.00 3.21
119 120 4.527944 TCTTTTGACAACCACATACCACA 58.472 39.130 0.00 0.00 0.00 4.17
120 121 5.508200 TTCTTTTGACAACCACATACCAC 57.492 39.130 0.00 0.00 0.00 4.16
121 122 6.322456 TGATTTCTTTTGACAACCACATACCA 59.678 34.615 0.00 0.00 0.00 3.25
122 123 6.744112 TGATTTCTTTTGACAACCACATACC 58.256 36.000 0.00 0.00 0.00 2.73
123 124 7.382218 CCTTGATTTCTTTTGACAACCACATAC 59.618 37.037 0.00 0.00 0.00 2.39
124 125 7.432869 CCTTGATTTCTTTTGACAACCACATA 58.567 34.615 0.00 0.00 0.00 2.29
125 126 6.282930 CCTTGATTTCTTTTGACAACCACAT 58.717 36.000 0.00 0.00 0.00 3.21
126 127 5.395103 CCCTTGATTTCTTTTGACAACCACA 60.395 40.000 0.00 0.00 0.00 4.17
127 128 5.049828 CCCTTGATTTCTTTTGACAACCAC 58.950 41.667 0.00 0.00 0.00 4.16
128 129 4.959210 TCCCTTGATTTCTTTTGACAACCA 59.041 37.500 0.00 0.00 0.00 3.67
129 130 5.529581 TCCCTTGATTTCTTTTGACAACC 57.470 39.130 0.00 0.00 0.00 3.77
130 131 6.015095 AGGATCCCTTGATTTCTTTTGACAAC 60.015 38.462 8.55 0.00 0.00 3.32
131 132 6.077322 AGGATCCCTTGATTTCTTTTGACAA 58.923 36.000 8.55 0.00 0.00 3.18
132 133 5.644188 AGGATCCCTTGATTTCTTTTGACA 58.356 37.500 8.55 0.00 0.00 3.58
133 134 6.887002 AGTAGGATCCCTTGATTTCTTTTGAC 59.113 38.462 8.55 0.00 34.61 3.18
134 135 6.886459 CAGTAGGATCCCTTGATTTCTTTTGA 59.114 38.462 8.55 0.00 34.61 2.69
135 136 6.405176 GCAGTAGGATCCCTTGATTTCTTTTG 60.405 42.308 8.55 0.00 34.61 2.44
136 137 5.654209 GCAGTAGGATCCCTTGATTTCTTTT 59.346 40.000 8.55 0.00 34.61 2.27
137 138 5.196695 GCAGTAGGATCCCTTGATTTCTTT 58.803 41.667 8.55 0.00 34.61 2.52
138 139 4.228210 TGCAGTAGGATCCCTTGATTTCTT 59.772 41.667 8.55 0.00 34.61 2.52
139 140 3.782523 TGCAGTAGGATCCCTTGATTTCT 59.217 43.478 8.55 0.00 34.61 2.52
140 141 4.156455 TGCAGTAGGATCCCTTGATTTC 57.844 45.455 8.55 0.00 34.61 2.17
141 142 4.803329 ATGCAGTAGGATCCCTTGATTT 57.197 40.909 8.55 0.00 34.61 2.17
142 143 5.805751 GCATATGCAGTAGGATCCCTTGATT 60.806 44.000 22.84 0.00 41.59 2.57
143 144 4.324099 GCATATGCAGTAGGATCCCTTGAT 60.324 45.833 22.84 3.69 41.59 2.57
144 145 3.008375 GCATATGCAGTAGGATCCCTTGA 59.992 47.826 22.84 0.00 41.59 3.02
145 146 3.341823 GCATATGCAGTAGGATCCCTTG 58.658 50.000 22.84 5.75 41.59 3.61
146 147 2.307098 GGCATATGCAGTAGGATCCCTT 59.693 50.000 28.07 0.00 44.36 3.95
147 148 1.912043 GGCATATGCAGTAGGATCCCT 59.088 52.381 28.07 0.00 44.36 4.20
148 149 1.912043 AGGCATATGCAGTAGGATCCC 59.088 52.381 28.07 7.52 44.36 3.85
149 150 3.710209 AAGGCATATGCAGTAGGATCC 57.290 47.619 28.07 2.48 44.36 3.36
150 151 8.970859 AATTATAAGGCATATGCAGTAGGATC 57.029 34.615 28.07 8.95 44.36 3.36
180 181 9.672673 CTAGGGTCTCAATAAGAAATGAAAAGA 57.327 33.333 0.00 0.00 35.21 2.52
181 182 9.672673 TCTAGGGTCTCAATAAGAAATGAAAAG 57.327 33.333 0.00 0.00 35.21 2.27
182 183 9.672673 CTCTAGGGTCTCAATAAGAAATGAAAA 57.327 33.333 0.00 0.00 35.21 2.29
185 186 7.979786 ACTCTAGGGTCTCAATAAGAAATGA 57.020 36.000 0.00 0.00 35.21 2.57
187 188 8.152023 ACAACTCTAGGGTCTCAATAAGAAAT 57.848 34.615 0.00 0.00 35.21 2.17
188 189 7.455008 AGACAACTCTAGGGTCTCAATAAGAAA 59.545 37.037 0.00 0.00 37.31 2.52
189 190 6.954684 AGACAACTCTAGGGTCTCAATAAGAA 59.045 38.462 0.00 0.00 37.31 2.52
190 191 6.494952 AGACAACTCTAGGGTCTCAATAAGA 58.505 40.000 0.00 0.00 37.31 2.10
191 192 6.783708 AGACAACTCTAGGGTCTCAATAAG 57.216 41.667 0.00 0.00 37.31 1.73
196 198 8.840200 ATTATTTAGACAACTCTAGGGTCTCA 57.160 34.615 0.00 0.00 41.74 3.27
200 202 8.053355 CCCAAATTATTTAGACAACTCTAGGGT 58.947 37.037 0.00 0.00 30.31 4.34
223 225 0.033208 GGTCATCTCATTTGGCCCCA 60.033 55.000 0.00 0.00 32.52 4.96
226 228 1.103398 CCGGGTCATCTCATTTGGCC 61.103 60.000 0.00 0.00 38.16 5.36
227 229 1.728490 GCCGGGTCATCTCATTTGGC 61.728 60.000 2.18 0.00 0.00 4.52
229 231 0.744414 ACGCCGGGTCATCTCATTTG 60.744 55.000 2.18 0.00 0.00 2.32
245 247 1.134694 GCATCGGGTTCTCAAACGC 59.865 57.895 0.00 0.00 43.05 4.84
251 253 1.750193 TCAAATGGCATCGGGTTCTC 58.250 50.000 0.00 0.00 0.00 2.87
258 260 3.567164 AGCCTCTAAATCAAATGGCATCG 59.433 43.478 0.00 0.00 42.46 3.84
300 302 8.419076 TTTTTGTAGCTTTGTTCCTGATTTTC 57.581 30.769 0.00 0.00 0.00 2.29
327 329 4.080526 ACTCATAGTGGAAGGCGGTATTTT 60.081 41.667 0.00 0.00 0.00 1.82
328 330 3.454812 ACTCATAGTGGAAGGCGGTATTT 59.545 43.478 0.00 0.00 0.00 1.40
330 332 2.679082 ACTCATAGTGGAAGGCGGTAT 58.321 47.619 0.00 0.00 0.00 2.73
332 334 2.032620 CTACTCATAGTGGAAGGCGGT 58.967 52.381 0.00 0.00 0.00 5.68
333 335 2.032620 ACTACTCATAGTGGAAGGCGG 58.967 52.381 0.00 0.00 40.32 6.13
346 348 4.877378 AATGTTCGGTTACCACTACTCA 57.123 40.909 1.13 0.00 0.00 3.41
347 349 5.467735 ACAAAATGTTCGGTTACCACTACTC 59.532 40.000 1.13 0.00 0.00 2.59
348 350 5.370679 ACAAAATGTTCGGTTACCACTACT 58.629 37.500 1.13 0.00 0.00 2.57
349 351 5.678132 ACAAAATGTTCGGTTACCACTAC 57.322 39.130 1.13 0.00 0.00 2.73
350 352 7.798596 TTAACAAAATGTTCGGTTACCACTA 57.201 32.000 1.13 0.00 40.22 2.74
351 353 6.696441 TTAACAAAATGTTCGGTTACCACT 57.304 33.333 1.13 0.00 40.22 4.00
353 355 6.924060 CCAATTAACAAAATGTTCGGTTACCA 59.076 34.615 1.13 0.00 40.22 3.25
354 356 6.366604 CCCAATTAACAAAATGTTCGGTTACC 59.633 38.462 0.00 0.00 40.22 2.85
356 358 7.052142 ACCCAATTAACAAAATGTTCGGTTA 57.948 32.000 0.00 0.00 40.22 2.85
357 359 5.919755 ACCCAATTAACAAAATGTTCGGTT 58.080 33.333 0.00 0.00 40.22 4.44
359 361 5.986135 TGAACCCAATTAACAAAATGTTCGG 59.014 36.000 0.00 0.00 40.22 4.30
361 363 8.432110 ACTTGAACCCAATTAACAAAATGTTC 57.568 30.769 0.00 0.00 40.22 3.18
364 366 8.430801 TTGACTTGAACCCAATTAACAAAATG 57.569 30.769 0.00 0.00 0.00 2.32
415 418 3.895041 TGGATCGCAGATCCTTACATACA 59.105 43.478 26.77 10.57 45.12 2.29
419 422 4.129380 CAATTGGATCGCAGATCCTTACA 58.871 43.478 26.77 15.06 45.12 2.41
425 428 1.528586 CGGTCAATTGGATCGCAGATC 59.471 52.381 5.42 9.24 44.21 2.75
435 438 9.408069 GTATTAGAATCTACTACGGTCAATTGG 57.592 37.037 5.42 0.00 0.00 3.16
436 439 9.408069 GGTATTAGAATCTACTACGGTCAATTG 57.592 37.037 10.39 0.00 0.00 2.32
445 448 9.465985 GACAAAGCTGGTATTAGAATCTACTAC 57.534 37.037 8.71 8.71 0.00 2.73
446 449 8.639761 GGACAAAGCTGGTATTAGAATCTACTA 58.360 37.037 0.00 0.00 0.00 1.82
447 450 7.125811 TGGACAAAGCTGGTATTAGAATCTACT 59.874 37.037 0.00 0.00 0.00 2.57
448 451 7.272978 TGGACAAAGCTGGTATTAGAATCTAC 58.727 38.462 0.00 0.00 0.00 2.59
449 452 7.432148 TGGACAAAGCTGGTATTAGAATCTA 57.568 36.000 0.00 0.00 0.00 1.98
450 453 6.313519 TGGACAAAGCTGGTATTAGAATCT 57.686 37.500 0.00 0.00 0.00 2.40
464 467 2.200373 TCTAGCCCTTTGGACAAAGC 57.800 50.000 17.14 9.47 44.76 3.51
467 470 2.446435 GCATTCTAGCCCTTTGGACAA 58.554 47.619 0.00 0.00 0.00 3.18
468 471 2.128771 GCATTCTAGCCCTTTGGACA 57.871 50.000 0.00 0.00 0.00 4.02
478 481 1.348594 GTCGCGTTGGCATTCTAGC 59.651 57.895 5.77 0.00 39.92 3.42
479 482 1.075542 TTGTCGCGTTGGCATTCTAG 58.924 50.000 5.77 0.00 39.92 2.43
514 523 5.134202 TGTCATGTTGTCATTCTACGTCT 57.866 39.130 0.00 0.00 31.15 4.18
516 525 6.801539 ATTTGTCATGTTGTCATTCTACGT 57.198 33.333 0.00 0.00 31.15 3.57
543 552 6.723977 TCCAACACAGGCCTTTTTCTAATTAT 59.276 34.615 0.00 0.00 0.00 1.28
547 556 3.888930 CTCCAACACAGGCCTTTTTCTAA 59.111 43.478 0.00 0.00 0.00 2.10
582 591 6.610830 TGCCAACATAGGAAACCATTAATCAT 59.389 34.615 0.00 0.00 0.00 2.45
585 594 6.041979 GGATGCCAACATAGGAAACCATTAAT 59.958 38.462 0.00 0.00 36.35 1.40
605 615 7.579761 AGATTCAAGGATAAGAAAAGGATGC 57.420 36.000 0.00 0.00 0.00 3.91
659 669 3.483421 TCTCCTGGATAGCAATGCATTG 58.517 45.455 30.92 30.92 40.66 2.82
662 672 2.401568 TCTCTCCTGGATAGCAATGCA 58.598 47.619 8.35 0.00 31.91 3.96
760 770 0.865769 CTCCGACCGTGGTGAAAAAG 59.134 55.000 0.00 0.00 0.00 2.27
774 784 4.671590 TCGTGGAGGGTGCTCCGA 62.672 66.667 0.00 0.00 46.18 4.55
775 785 4.436998 GTCGTGGAGGGTGCTCCG 62.437 72.222 0.00 0.00 46.18 4.63
776 786 4.436998 CGTCGTGGAGGGTGCTCC 62.437 72.222 0.00 0.00 43.60 4.70
777 787 4.436998 CCGTCGTGGAGGGTGCTC 62.437 72.222 0.00 0.00 42.00 4.26
778 788 4.988716 TCCGTCGTGGAGGGTGCT 62.989 66.667 4.48 0.00 43.74 4.40
916 940 2.204029 GGTGGAGGGTGGGTGGTA 60.204 66.667 0.00 0.00 0.00 3.25
986 1010 2.029073 CCATGGCCGCTACCTACG 59.971 66.667 0.00 0.00 0.00 3.51
987 1011 1.367840 CTCCATGGCCGCTACCTAC 59.632 63.158 6.96 0.00 0.00 3.18
988 1012 1.837051 CCTCCATGGCCGCTACCTA 60.837 63.158 6.96 0.00 0.00 3.08
989 1013 3.164269 CCTCCATGGCCGCTACCT 61.164 66.667 6.96 0.00 0.00 3.08
1109 1136 4.363990 CCGTCTGCCAGTCGCTGT 62.364 66.667 5.82 0.00 38.78 4.40
2274 2319 4.514441 TGTAGTAACACCGAGCTAGCTATC 59.486 45.833 19.38 5.46 0.00 2.08
2275 2320 4.458397 TGTAGTAACACCGAGCTAGCTAT 58.542 43.478 19.38 3.20 0.00 2.97
2276 2321 3.877559 TGTAGTAACACCGAGCTAGCTA 58.122 45.455 19.38 0.00 0.00 3.32
2286 2336 8.542497 TCAATTGACTGTAATGTAGTAACACC 57.458 34.615 3.38 0.00 38.78 4.16
2319 2371 8.181573 GGATAAATTAACAACGAATCTCTTGCA 58.818 33.333 0.00 0.00 0.00 4.08
2435 2488 8.506140 TTGATTCATTCATTTTTCTCAACGAC 57.494 30.769 0.00 0.00 33.34 4.34
2469 2572 0.326264 GACCCTCACTCTGGCATGTT 59.674 55.000 0.00 0.00 0.00 2.71
2470 2573 0.546267 AGACCCTCACTCTGGCATGT 60.546 55.000 0.00 0.00 0.00 3.21
2471 2574 0.617413 AAGACCCTCACTCTGGCATG 59.383 55.000 0.00 0.00 0.00 4.06
2472 2575 0.617413 CAAGACCCTCACTCTGGCAT 59.383 55.000 0.00 0.00 0.00 4.40
2473 2576 1.483595 CCAAGACCCTCACTCTGGCA 61.484 60.000 0.00 0.00 0.00 4.92
2522 2625 3.676646 GCAGATGCAAGAACAATCCAAAC 59.323 43.478 0.00 0.00 41.59 2.93
2541 2644 1.342174 ACCAACAAGGAATTGCTGCAG 59.658 47.619 10.11 10.11 41.22 4.41
2582 2693 2.975851 GCAAGATGCTGTTCTTCGTTTG 59.024 45.455 0.00 0.00 40.96 2.93
2618 2736 2.134789 ACCCAATCATGCTTCTGACC 57.865 50.000 0.00 0.00 0.00 4.02
2642 2760 2.528743 CCATCCACGTGCTCATCGC 61.529 63.158 10.91 0.00 39.77 4.58
2643 2761 1.884464 CCCATCCACGTGCTCATCG 60.884 63.158 10.91 0.00 0.00 3.84
2696 2814 1.205417 CATGGACACTTGGATTTGGGC 59.795 52.381 0.00 0.00 0.00 5.36
2762 2880 2.029828 ACGCACTTCTTCTCAGTACCTG 60.030 50.000 0.00 0.00 0.00 4.00
2796 2922 3.285484 GGCAATCTGTGTCCTTCATCAT 58.715 45.455 0.00 0.00 0.00 2.45
2797 2923 2.040145 TGGCAATCTGTGTCCTTCATCA 59.960 45.455 0.00 0.00 0.00 3.07
2798 2924 2.421424 GTGGCAATCTGTGTCCTTCATC 59.579 50.000 0.00 0.00 0.00 2.92
2799 2925 2.040813 AGTGGCAATCTGTGTCCTTCAT 59.959 45.455 0.00 0.00 0.00 2.57
2809 2935 0.877071 AGCGTTTGAGTGGCAATCTG 59.123 50.000 16.55 4.80 36.15 2.90
2821 2947 5.200454 GCATGATTATCACTACAGCGTTTG 58.800 41.667 0.00 0.00 0.00 2.93
2858 2992 2.200899 AACATTCCGTTGTGCTTTTGC 58.799 42.857 0.00 0.00 40.60 3.68
2864 3005 2.477863 GCCAGATAACATTCCGTTGTGC 60.478 50.000 0.00 0.00 38.63 4.57
2881 3023 3.123620 GCAGCTGACTTCCGCCAG 61.124 66.667 20.43 0.00 0.00 4.85
2887 3029 1.743252 CCCCTTCGCAGCTGACTTC 60.743 63.158 20.43 0.00 0.00 3.01
2896 3038 2.349755 GCTTACCACCCCTTCGCA 59.650 61.111 0.00 0.00 0.00 5.10
2898 3040 1.017701 GTTCGCTTACCACCCCTTCG 61.018 60.000 0.00 0.00 0.00 3.79
2906 3048 1.198178 GGAAAATGCGTTCGCTTACCA 59.802 47.619 17.63 0.00 0.00 3.25
2907 3049 1.467342 AGGAAAATGCGTTCGCTTACC 59.533 47.619 17.63 14.18 0.00 2.85
2909 3051 1.466950 CCAGGAAAATGCGTTCGCTTA 59.533 47.619 17.63 0.00 0.00 3.09
2910 3052 0.240945 CCAGGAAAATGCGTTCGCTT 59.759 50.000 17.63 9.09 0.00 4.68
2912 3055 1.801512 GCCAGGAAAATGCGTTCGC 60.802 57.895 10.34 10.34 0.00 4.70
2915 3058 1.290009 GCTGCCAGGAAAATGCGTT 59.710 52.632 0.00 0.00 0.00 4.84
2933 3076 1.638388 TTTGATCTCGCAGCGCAAGG 61.638 55.000 10.87 0.00 38.28 3.61
2934 3077 0.519999 GTTTGATCTCGCAGCGCAAG 60.520 55.000 10.87 3.10 43.44 4.01
2940 3087 1.970917 GCCACCGTTTGATCTCGCAG 61.971 60.000 0.00 0.00 0.00 5.18
2941 3088 2.032634 GCCACCGTTTGATCTCGCA 61.033 57.895 0.00 0.00 0.00 5.10
2945 3092 1.981256 AAACTGCCACCGTTTGATCT 58.019 45.000 0.00 0.00 33.64 2.75
2985 3132 5.069648 ACAACATGACAGTTTCTCTCAGAGA 59.930 40.000 0.00 0.00 36.86 3.10
2986 3133 5.295950 ACAACATGACAGTTTCTCTCAGAG 58.704 41.667 0.00 0.00 0.00 3.35
2987 3134 5.282055 ACAACATGACAGTTTCTCTCAGA 57.718 39.130 0.00 0.00 0.00 3.27
2988 3135 5.757320 AGAACAACATGACAGTTTCTCTCAG 59.243 40.000 0.00 0.00 0.00 3.35
2989 3136 5.525012 CAGAACAACATGACAGTTTCTCTCA 59.475 40.000 0.00 0.00 0.00 3.27
2990 3137 5.755375 TCAGAACAACATGACAGTTTCTCTC 59.245 40.000 0.00 0.00 0.00 3.20
2991 3138 5.674525 TCAGAACAACATGACAGTTTCTCT 58.325 37.500 0.00 0.00 0.00 3.10
3016 3163 3.434596 GGTGTAGGAGGGTTGACAGTTTT 60.435 47.826 0.00 0.00 0.00 2.43
3023 3170 2.908351 GGTTTAGGTGTAGGAGGGTTGA 59.092 50.000 0.00 0.00 0.00 3.18
3031 3178 5.888982 ATAGATGGTGGTTTAGGTGTAGG 57.111 43.478 0.00 0.00 0.00 3.18
3032 3179 6.040166 ACGTATAGATGGTGGTTTAGGTGTAG 59.960 42.308 0.00 0.00 0.00 2.74
3045 3193 4.202010 GGCATTTGCAAACGTATAGATGGT 60.202 41.667 15.41 0.00 44.36 3.55
3046 3194 4.202000 TGGCATTTGCAAACGTATAGATGG 60.202 41.667 15.41 0.00 44.36 3.51
3047 3195 4.919206 TGGCATTTGCAAACGTATAGATG 58.081 39.130 15.41 7.39 44.36 2.90
3059 3207 0.762082 TGAAGGGGTTGGCATTTGCA 60.762 50.000 4.74 0.00 44.36 4.08
3076 3224 3.230540 CGAACGTTTGCTCGCTGA 58.769 55.556 0.46 0.00 0.00 4.26
3080 3228 2.101209 AACTGGCGAACGTTTGCTCG 62.101 55.000 33.36 26.29 37.71 5.03
3081 3229 0.863144 TAACTGGCGAACGTTTGCTC 59.137 50.000 33.36 24.78 37.71 4.26
3082 3230 1.263217 CTTAACTGGCGAACGTTTGCT 59.737 47.619 33.36 19.82 37.71 3.91
3083 3231 1.262151 TCTTAACTGGCGAACGTTTGC 59.738 47.619 28.87 28.87 36.84 3.68
3084 3232 2.096417 CCTCTTAACTGGCGAACGTTTG 60.096 50.000 11.39 11.39 0.00 2.93
3085 3233 2.140717 CCTCTTAACTGGCGAACGTTT 58.859 47.619 0.46 0.00 0.00 3.60
3087 3235 0.037605 CCCTCTTAACTGGCGAACGT 60.038 55.000 0.00 0.00 0.00 3.99
3088 3236 1.359459 GCCCTCTTAACTGGCGAACG 61.359 60.000 0.00 0.00 35.08 3.95
3107 3255 1.881591 TCCTCGGTTTACGTTTTGGG 58.118 50.000 0.00 0.00 44.69 4.12
3114 3262 0.179092 GTCCCCATCCTCGGTTTACG 60.179 60.000 0.00 0.00 46.11 3.18
3120 3268 3.480133 GGTGGTCCCCATCCTCGG 61.480 72.222 0.00 0.00 35.28 4.63
3121 3269 2.365635 AGGTGGTCCCCATCCTCG 60.366 66.667 0.00 0.00 34.66 4.63
3122 3270 1.616628 ACAGGTGGTCCCCATCCTC 60.617 63.158 2.60 0.00 34.66 3.71
3123 3271 1.616628 GACAGGTGGTCCCCATCCT 60.617 63.158 0.00 0.00 40.83 3.24
3125 3273 1.604378 CTGACAGGTGGTCCCCATC 59.396 63.158 0.00 0.00 46.38 3.51
3126 3274 2.606587 GCTGACAGGTGGTCCCCAT 61.607 63.158 4.26 0.00 46.38 4.00
3127 3275 3.249189 GCTGACAGGTGGTCCCCA 61.249 66.667 4.26 0.00 46.38 4.96
3128 3276 2.930562 AGCTGACAGGTGGTCCCC 60.931 66.667 6.31 0.00 46.38 4.81
3129 3277 2.217038 TGAGCTGACAGGTGGTCCC 61.217 63.158 12.82 0.00 46.38 4.46
3145 3293 5.907662 AGAAGAGATGGGAATAAGATGGTGA 59.092 40.000 0.00 0.00 0.00 4.02
3173 3324 1.189524 CGTGGACAAGGTGGGGAGTA 61.190 60.000 0.00 0.00 0.00 2.59
3192 3343 4.635765 TGCCTATATGGATAATTTGCTCGC 59.364 41.667 0.00 0.00 38.35 5.03
3193 3344 6.317140 ACATGCCTATATGGATAATTTGCTCG 59.683 38.462 0.00 0.00 38.35 5.03
3194 3345 7.337689 TGACATGCCTATATGGATAATTTGCTC 59.662 37.037 0.00 0.00 38.35 4.26
3200 3351 6.988580 CGACATGACATGCCTATATGGATAAT 59.011 38.462 15.49 0.00 38.35 1.28
3207 3358 5.946377 TCTAGACGACATGACATGCCTATAT 59.054 40.000 15.49 0.00 0.00 0.86
3208 3359 5.181433 GTCTAGACGACATGACATGCCTATA 59.819 44.000 15.49 2.26 42.37 1.31
3211 3362 2.099921 GTCTAGACGACATGACATGCCT 59.900 50.000 15.49 9.73 42.37 4.75
3225 3376 3.810310 CTGGGATCCAGTTGTCTAGAC 57.190 52.381 16.32 16.32 45.82 2.59
3239 3390 0.035439 ATCGTTTTGACCGCTGGGAT 60.035 50.000 0.00 0.00 36.97 3.85
3245 3396 2.604969 TTTAGCATCGTTTTGACCGC 57.395 45.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.