Multiple sequence alignment - TraesCS5A01G368900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G368900 chr5A 100.000 3824 0 0 1 3824 569282169 569285992 0.000000e+00 7062
1 TraesCS5A01G368900 chr5A 86.564 454 45 11 1 444 16995093 16994646 1.600000e-133 486
2 TraesCS5A01G368900 chr5D 86.198 3398 245 114 541 3824 449990308 449993595 0.000000e+00 3470
3 TraesCS5A01G368900 chr5B 89.916 2618 148 61 1259 3824 549970352 549972905 0.000000e+00 3265
4 TraesCS5A01G368900 chr5B 82.230 287 24 12 930 1207 549969955 549970223 4.970000e-54 222
5 TraesCS5A01G368900 chr6D 85.144 451 50 10 1 440 392794117 392793673 2.710000e-121 446
6 TraesCS5A01G368900 chr6D 84.292 452 51 13 5 444 333806720 333806277 1.270000e-114 424
7 TraesCS5A01G368900 chr6D 84.471 425 50 12 29 442 420967716 420968135 4.600000e-109 405
8 TraesCS5A01G368900 chr1D 85.169 445 49 11 6 443 262025848 262026282 1.260000e-119 440
9 TraesCS5A01G368900 chr4A 84.633 449 52 8 1 444 497090122 497089686 7.590000e-117 431
10 TraesCS5A01G368900 chr4A 82.819 454 45 19 1 442 637818059 637818491 3.610000e-100 375
11 TraesCS5A01G368900 chr7D 83.850 452 51 13 5 443 136297504 136297946 9.890000e-111 411
12 TraesCS5A01G368900 chr7A 82.379 454 62 12 1 446 474531155 474531598 2.790000e-101 379
13 TraesCS5A01G368900 chr2D 88.927 289 12 8 2542 2819 543054162 543053883 4.730000e-89 339


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G368900 chr5A 569282169 569285992 3823 False 7062.0 7062 100.000 1 3824 1 chr5A.!!$F1 3823
1 TraesCS5A01G368900 chr5D 449990308 449993595 3287 False 3470.0 3470 86.198 541 3824 1 chr5D.!!$F1 3283
2 TraesCS5A01G368900 chr5B 549969955 549972905 2950 False 1743.5 3265 86.073 930 3824 2 chr5B.!!$F1 2894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.031043 CCAAAACGTCGAAAACCCCC 59.969 55.0 0.0 0.0 0.0 5.40 F
364 365 0.105593 AGCATCCAGAGTACGGCATG 59.894 55.0 0.0 0.0 0.0 4.06 F
1713 1882 0.106868 CTCATTCATCTGCCTGCCCA 60.107 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2291 0.176910 TCACGTCAGAAACACAGCCA 59.823 50.0 0.0 0.0 0.00 4.75 R
2186 2381 2.452600 AGAGTCCTCTCCTCCATGTC 57.547 55.0 0.0 0.0 41.26 3.06 R
2846 3050 0.109153 ATGAACCTGACTGTGCAGCA 59.891 50.0 0.0 0.0 34.56 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.885113 CGAGAGGCATGACCGTGA 59.115 61.111 0.00 0.00 46.52 4.35
34 35 1.517257 CGAGAGGCATGACCGTGAC 60.517 63.158 0.00 0.00 46.52 3.67
35 36 1.893786 GAGAGGCATGACCGTGACT 59.106 57.895 0.00 0.00 46.52 3.41
36 37 4.504132 GAGGCATGACCGTGACTC 57.496 61.111 9.12 9.12 46.22 3.36
37 38 4.120244 AGGCATGACCGTGACTCT 57.880 55.556 0.00 0.00 46.52 3.24
38 39 1.893786 AGGCATGACCGTGACTCTC 59.106 57.895 0.00 0.00 46.52 3.20
39 40 1.517257 GGCATGACCGTGACTCTCG 60.517 63.158 0.00 0.00 0.00 4.04
40 41 2.161486 GCATGACCGTGACTCTCGC 61.161 63.158 0.00 0.00 0.00 5.03
63 64 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
80 81 2.050442 CGGAAGCAAAACCGTGGC 60.050 61.111 0.00 0.00 43.53 5.01
81 82 2.551912 CGGAAGCAAAACCGTGGCT 61.552 57.895 0.00 0.00 43.53 4.75
82 83 1.285950 GGAAGCAAAACCGTGGCTC 59.714 57.895 0.00 0.00 36.76 4.70
83 84 1.172812 GGAAGCAAAACCGTGGCTCT 61.173 55.000 0.00 0.00 36.76 4.09
84 85 0.238553 GAAGCAAAACCGTGGCTCTC 59.761 55.000 0.00 0.00 36.76 3.20
85 86 1.507141 AAGCAAAACCGTGGCTCTCG 61.507 55.000 0.00 0.00 36.76 4.04
86 87 2.556287 CAAAACCGTGGCTCTCGC 59.444 61.111 0.00 0.00 0.00 5.03
87 88 2.110213 AAAACCGTGGCTCTCGCA 59.890 55.556 0.00 0.00 38.10 5.10
88 89 1.525077 AAAACCGTGGCTCTCGCAA 60.525 52.632 0.00 0.00 38.10 4.85
89 90 1.098712 AAAACCGTGGCTCTCGCAAA 61.099 50.000 0.00 0.00 38.10 3.68
90 91 1.098712 AAACCGTGGCTCTCGCAAAA 61.099 50.000 0.00 0.00 38.10 2.44
91 92 1.507141 AACCGTGGCTCTCGCAAAAG 61.507 55.000 0.00 0.00 38.10 2.27
92 93 1.667830 CCGTGGCTCTCGCAAAAGA 60.668 57.895 0.00 0.00 38.10 2.52
93 94 1.227999 CCGTGGCTCTCGCAAAAGAA 61.228 55.000 0.00 0.00 38.10 2.52
94 95 0.586319 CGTGGCTCTCGCAAAAGAAA 59.414 50.000 0.00 0.00 38.10 2.52
95 96 1.002900 CGTGGCTCTCGCAAAAGAAAA 60.003 47.619 0.00 0.00 38.10 2.29
96 97 2.540769 CGTGGCTCTCGCAAAAGAAAAA 60.541 45.455 0.00 0.00 38.10 1.94
148 149 2.050351 ACGGTTGTGACTCTCGCG 60.050 61.111 0.00 0.00 0.00 5.87
149 150 2.254350 CGGTTGTGACTCTCGCGA 59.746 61.111 9.26 9.26 0.00 5.87
150 151 1.371267 CGGTTGTGACTCTCGCGAA 60.371 57.895 11.33 0.02 0.00 4.70
151 152 0.937699 CGGTTGTGACTCTCGCGAAA 60.938 55.000 11.33 0.00 0.00 3.46
152 153 1.214367 GGTTGTGACTCTCGCGAAAA 58.786 50.000 11.33 0.00 0.00 2.29
153 154 1.595794 GGTTGTGACTCTCGCGAAAAA 59.404 47.619 11.33 0.00 0.00 1.94
247 248 7.611213 TTTGATCGAAAAGATAAGGAAGACC 57.389 36.000 0.00 0.00 40.26 3.85
248 249 5.348986 TGATCGAAAAGATAAGGAAGACCG 58.651 41.667 0.00 0.00 40.26 4.79
249 250 4.796038 TCGAAAAGATAAGGAAGACCGT 57.204 40.909 0.00 0.00 41.83 4.83
250 251 4.491676 TCGAAAAGATAAGGAAGACCGTG 58.508 43.478 0.00 0.00 41.83 4.94
251 252 3.617263 CGAAAAGATAAGGAAGACCGTGG 59.383 47.826 0.00 0.00 41.83 4.94
252 253 3.629142 AAAGATAAGGAAGACCGTGGG 57.371 47.619 0.00 0.00 41.83 4.61
253 254 2.544844 AGATAAGGAAGACCGTGGGA 57.455 50.000 0.00 0.00 41.83 4.37
254 255 2.829023 AGATAAGGAAGACCGTGGGAA 58.171 47.619 0.00 0.00 41.83 3.97
255 256 3.178865 AGATAAGGAAGACCGTGGGAAA 58.821 45.455 0.00 0.00 41.83 3.13
256 257 3.585732 AGATAAGGAAGACCGTGGGAAAA 59.414 43.478 0.00 0.00 41.83 2.29
257 258 1.977056 AAGGAAGACCGTGGGAAAAC 58.023 50.000 0.00 0.00 41.83 2.43
258 259 0.109913 AGGAAGACCGTGGGAAAACC 59.890 55.000 0.00 0.00 41.83 3.27
259 260 2.597878 AGGAAGACCGTGGGAAAACCA 61.598 52.381 0.00 0.00 44.11 3.67
269 270 2.847959 GGGAAAACCAAAACGTCGAA 57.152 45.000 0.00 0.00 39.85 3.71
270 271 3.148026 GGGAAAACCAAAACGTCGAAA 57.852 42.857 0.00 0.00 39.85 3.46
271 272 3.509740 GGGAAAACCAAAACGTCGAAAA 58.490 40.909 0.00 0.00 39.85 2.29
272 273 3.304026 GGGAAAACCAAAACGTCGAAAAC 59.696 43.478 0.00 0.00 39.85 2.43
273 274 3.304026 GGAAAACCAAAACGTCGAAAACC 59.696 43.478 0.00 0.00 0.00 3.27
274 275 2.565210 AACCAAAACGTCGAAAACCC 57.435 45.000 0.00 0.00 0.00 4.11
275 276 0.740149 ACCAAAACGTCGAAAACCCC 59.260 50.000 0.00 0.00 0.00 4.95
276 277 0.031043 CCAAAACGTCGAAAACCCCC 59.969 55.000 0.00 0.00 0.00 5.40
277 278 0.317186 CAAAACGTCGAAAACCCCCG 60.317 55.000 0.00 0.00 0.00 5.73
278 279 0.463474 AAAACGTCGAAAACCCCCGA 60.463 50.000 0.00 0.00 0.00 5.14
279 280 0.463474 AAACGTCGAAAACCCCCGAA 60.463 50.000 0.00 0.00 36.50 4.30
280 281 0.463474 AACGTCGAAAACCCCCGAAA 60.463 50.000 0.00 0.00 36.50 3.46
281 282 0.463474 ACGTCGAAAACCCCCGAAAA 60.463 50.000 0.00 0.00 36.50 2.29
282 283 0.662085 CGTCGAAAACCCCCGAAAAA 59.338 50.000 0.00 0.00 36.50 1.94
307 308 9.600646 AAAACCATTTAAAAAGTCAAAAACACG 57.399 25.926 0.00 0.00 0.00 4.49
308 309 7.892778 ACCATTTAAAAAGTCAAAAACACGT 57.107 28.000 0.00 0.00 0.00 4.49
309 310 7.734554 ACCATTTAAAAAGTCAAAAACACGTG 58.265 30.769 15.48 15.48 0.00 4.49
310 311 6.680758 CCATTTAAAAAGTCAAAAACACGTGC 59.319 34.615 17.22 0.00 0.00 5.34
311 312 3.963340 AAAAAGTCAAAAACACGTGCG 57.037 38.095 17.22 0.00 0.00 5.34
312 313 2.904011 AAAGTCAAAAACACGTGCGA 57.096 40.000 17.22 1.61 0.00 5.10
313 314 2.904011 AAGTCAAAAACACGTGCGAA 57.096 40.000 17.22 0.00 0.00 4.70
314 315 2.904011 AGTCAAAAACACGTGCGAAA 57.096 40.000 17.22 0.00 0.00 3.46
315 316 3.204597 AGTCAAAAACACGTGCGAAAA 57.795 38.095 17.22 0.00 0.00 2.29
316 317 3.566523 AGTCAAAAACACGTGCGAAAAA 58.433 36.364 17.22 0.00 0.00 1.94
361 362 4.740235 GAGCATCCAGAGTACGGC 57.260 61.111 0.00 0.00 0.00 5.68
362 363 1.816537 GAGCATCCAGAGTACGGCA 59.183 57.895 0.00 0.00 0.00 5.69
363 364 0.390860 GAGCATCCAGAGTACGGCAT 59.609 55.000 0.00 0.00 0.00 4.40
364 365 0.105593 AGCATCCAGAGTACGGCATG 59.894 55.000 0.00 0.00 0.00 4.06
365 366 0.179073 GCATCCAGAGTACGGCATGT 60.179 55.000 0.00 0.00 0.00 3.21
366 367 1.575244 CATCCAGAGTACGGCATGTG 58.425 55.000 0.00 0.00 0.00 3.21
367 368 0.465705 ATCCAGAGTACGGCATGTGG 59.534 55.000 0.00 0.00 0.00 4.17
368 369 1.815421 CCAGAGTACGGCATGTGGC 60.815 63.158 0.00 0.00 43.74 5.01
376 377 3.142838 GGCATGTGGCGAATGGCT 61.143 61.111 15.63 0.00 44.76 4.75
377 378 1.823470 GGCATGTGGCGAATGGCTA 60.823 57.895 15.63 0.00 44.76 3.93
378 379 1.383456 GGCATGTGGCGAATGGCTAA 61.383 55.000 15.63 0.00 44.76 3.09
379 380 0.455410 GCATGTGGCGAATGGCTAAA 59.545 50.000 0.00 0.00 42.94 1.85
380 381 1.135141 GCATGTGGCGAATGGCTAAAA 60.135 47.619 0.00 0.00 42.94 1.52
381 382 2.801063 CATGTGGCGAATGGCTAAAAG 58.199 47.619 0.00 0.00 42.94 2.27
382 383 0.525761 TGTGGCGAATGGCTAAAAGC 59.474 50.000 0.00 0.00 42.94 3.51
383 384 0.523335 GTGGCGAATGGCTAAAAGCG 60.523 55.000 0.00 0.00 43.62 4.68
384 385 1.586303 GGCGAATGGCTAAAAGCGC 60.586 57.895 0.00 0.00 43.62 5.92
385 386 1.586303 GCGAATGGCTAAAAGCGCC 60.586 57.895 2.29 0.00 43.62 6.53
390 391 4.868195 GGCTAAAAGCGCCAAGTG 57.132 55.556 2.29 0.00 46.77 3.16
391 392 1.212751 GGCTAAAAGCGCCAAGTGG 59.787 57.895 2.29 0.00 46.77 4.00
392 393 1.524008 GGCTAAAAGCGCCAAGTGGT 61.524 55.000 2.29 0.00 46.77 4.16
393 394 1.161843 GCTAAAAGCGCCAAGTGGTA 58.838 50.000 2.29 0.00 37.57 3.25
394 395 1.135774 GCTAAAAGCGCCAAGTGGTAC 60.136 52.381 2.29 0.00 37.57 3.34
395 396 2.423577 CTAAAAGCGCCAAGTGGTACT 58.576 47.619 2.29 0.00 37.57 2.73
396 397 0.951558 AAAAGCGCCAAGTGGTACTG 59.048 50.000 2.29 0.00 37.57 2.74
397 398 0.107831 AAAGCGCCAAGTGGTACTGA 59.892 50.000 2.29 0.00 37.57 3.41
398 399 0.324943 AAGCGCCAAGTGGTACTGAT 59.675 50.000 2.29 0.00 37.57 2.90
399 400 0.108138 AGCGCCAAGTGGTACTGATC 60.108 55.000 2.29 0.00 37.57 2.92
400 401 1.421410 GCGCCAAGTGGTACTGATCG 61.421 60.000 0.00 0.00 37.57 3.69
401 402 0.108804 CGCCAAGTGGTACTGATCGT 60.109 55.000 0.00 0.00 37.57 3.73
402 403 1.671850 CGCCAAGTGGTACTGATCGTT 60.672 52.381 0.00 0.00 37.57 3.85
403 404 1.732259 GCCAAGTGGTACTGATCGTTG 59.268 52.381 0.00 0.00 37.57 4.10
404 405 1.732259 CCAAGTGGTACTGATCGTTGC 59.268 52.381 0.00 0.00 0.00 4.17
405 406 2.412870 CAAGTGGTACTGATCGTTGCA 58.587 47.619 0.00 0.00 0.00 4.08
406 407 2.805671 CAAGTGGTACTGATCGTTGCAA 59.194 45.455 0.00 0.00 0.00 4.08
407 408 2.688507 AGTGGTACTGATCGTTGCAAG 58.311 47.619 0.00 0.00 0.00 4.01
408 409 1.732259 GTGGTACTGATCGTTGCAAGG 59.268 52.381 12.91 12.91 0.00 3.61
409 410 0.727398 GGTACTGATCGTTGCAAGGC 59.273 55.000 14.22 2.25 0.00 4.35
410 411 1.676014 GGTACTGATCGTTGCAAGGCT 60.676 52.381 14.22 4.59 0.00 4.58
411 412 1.661112 GTACTGATCGTTGCAAGGCTC 59.339 52.381 14.22 14.31 0.00 4.70
412 413 0.674895 ACTGATCGTTGCAAGGCTCC 60.675 55.000 17.51 8.73 0.00 4.70
413 414 1.372087 CTGATCGTTGCAAGGCTCCC 61.372 60.000 17.51 6.71 0.00 4.30
414 415 2.436646 ATCGTTGCAAGGCTCCCG 60.437 61.111 14.22 6.41 0.00 5.14
415 416 2.852495 GATCGTTGCAAGGCTCCCGA 62.852 60.000 14.22 11.74 0.00 5.14
416 417 2.463589 ATCGTTGCAAGGCTCCCGAA 62.464 55.000 14.22 0.00 0.00 4.30
417 418 2.680913 CGTTGCAAGGCTCCCGAAG 61.681 63.158 6.16 0.00 0.00 3.79
418 419 1.302511 GTTGCAAGGCTCCCGAAGA 60.303 57.895 0.00 0.00 0.00 2.87
419 420 0.889186 GTTGCAAGGCTCCCGAAGAA 60.889 55.000 0.00 0.00 0.00 2.52
420 421 0.606401 TTGCAAGGCTCCCGAAGAAG 60.606 55.000 0.00 0.00 0.00 2.85
421 422 2.402572 GCAAGGCTCCCGAAGAAGC 61.403 63.158 0.00 0.00 0.00 3.86
422 423 2.103042 CAAGGCTCCCGAAGAAGCG 61.103 63.158 0.00 0.00 0.00 4.68
423 424 3.959991 AAGGCTCCCGAAGAAGCGC 62.960 63.158 0.00 0.00 0.00 5.92
424 425 4.459089 GGCTCCCGAAGAAGCGCT 62.459 66.667 2.64 2.64 0.00 5.92
425 426 2.888051 GCTCCCGAAGAAGCGCTC 60.888 66.667 12.06 4.30 0.00 5.03
426 427 2.580867 CTCCCGAAGAAGCGCTCG 60.581 66.667 12.06 10.54 0.00 5.03
427 428 3.343788 CTCCCGAAGAAGCGCTCGT 62.344 63.158 12.06 2.20 0.00 4.18
428 429 2.432628 CCCGAAGAAGCGCTCGTT 60.433 61.111 12.06 7.24 0.00 3.85
429 430 1.153901 CCCGAAGAAGCGCTCGTTA 60.154 57.895 12.06 0.00 0.00 3.18
430 431 0.734942 CCCGAAGAAGCGCTCGTTAA 60.735 55.000 12.06 0.00 0.00 2.01
431 432 0.365859 CCGAAGAAGCGCTCGTTAAC 59.634 55.000 12.06 0.00 0.00 2.01
432 433 1.337821 CGAAGAAGCGCTCGTTAACT 58.662 50.000 12.06 0.00 0.00 2.24
433 434 2.512885 CGAAGAAGCGCTCGTTAACTA 58.487 47.619 12.06 0.00 0.00 2.24
434 435 2.526688 CGAAGAAGCGCTCGTTAACTAG 59.473 50.000 12.06 3.24 0.00 2.57
435 436 3.500014 GAAGAAGCGCTCGTTAACTAGT 58.500 45.455 12.06 0.00 0.00 2.57
436 437 3.572604 AGAAGCGCTCGTTAACTAGTT 57.427 42.857 12.06 13.68 0.00 2.24
437 438 3.243336 AGAAGCGCTCGTTAACTAGTTG 58.757 45.455 18.56 1.62 0.00 3.16
438 439 1.347320 AGCGCTCGTTAACTAGTTGC 58.653 50.000 18.56 11.18 0.00 4.17
439 440 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
440 441 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
441 442 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
442 443 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
443 444 2.527100 CTCGTTAACTAGTTGCTCCCG 58.473 52.381 18.56 11.89 0.00 5.14
444 445 2.161855 TCGTTAACTAGTTGCTCCCGA 58.838 47.619 18.56 13.77 0.00 5.14
445 446 2.756760 TCGTTAACTAGTTGCTCCCGAT 59.243 45.455 18.56 0.00 0.00 4.18
446 447 3.194116 TCGTTAACTAGTTGCTCCCGATT 59.806 43.478 18.56 0.00 0.00 3.34
447 448 4.398988 TCGTTAACTAGTTGCTCCCGATTA 59.601 41.667 18.56 0.00 0.00 1.75
448 449 5.104374 CGTTAACTAGTTGCTCCCGATTAA 58.896 41.667 18.56 0.00 0.00 1.40
449 450 5.751990 CGTTAACTAGTTGCTCCCGATTAAT 59.248 40.000 18.56 0.00 0.00 1.40
450 451 6.292168 CGTTAACTAGTTGCTCCCGATTAATG 60.292 42.308 18.56 2.26 0.00 1.90
451 452 3.467803 ACTAGTTGCTCCCGATTAATGC 58.532 45.455 0.00 0.00 0.00 3.56
452 453 1.680338 AGTTGCTCCCGATTAATGCC 58.320 50.000 0.00 0.00 0.00 4.40
453 454 1.212935 AGTTGCTCCCGATTAATGCCT 59.787 47.619 0.00 0.00 0.00 4.75
454 455 2.024414 GTTGCTCCCGATTAATGCCTT 58.976 47.619 0.00 0.00 0.00 4.35
455 456 1.967319 TGCTCCCGATTAATGCCTTC 58.033 50.000 0.00 0.00 0.00 3.46
456 457 1.239347 GCTCCCGATTAATGCCTTCC 58.761 55.000 0.00 0.00 0.00 3.46
457 458 1.202818 GCTCCCGATTAATGCCTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
458 459 2.749800 GCTCCCGATTAATGCCTTCCTT 60.750 50.000 0.00 0.00 0.00 3.36
459 460 3.142174 CTCCCGATTAATGCCTTCCTTC 58.858 50.000 0.00 0.00 0.00 3.46
460 461 1.873591 CCCGATTAATGCCTTCCTTCG 59.126 52.381 0.00 0.00 0.00 3.79
461 462 2.484770 CCCGATTAATGCCTTCCTTCGA 60.485 50.000 0.00 0.00 0.00 3.71
462 463 2.802816 CCGATTAATGCCTTCCTTCGAG 59.197 50.000 0.00 0.00 0.00 4.04
463 464 2.802816 CGATTAATGCCTTCCTTCGAGG 59.197 50.000 0.00 0.00 36.46 4.63
464 465 2.710096 TTAATGCCTTCCTTCGAGGG 57.290 50.000 7.38 7.38 38.30 4.30
465 466 0.837272 TAATGCCTTCCTTCGAGGGG 59.163 55.000 14.38 6.95 35.76 4.79
466 467 0.914417 AATGCCTTCCTTCGAGGGGA 60.914 55.000 14.38 3.54 39.98 4.81
467 468 0.914417 ATGCCTTCCTTCGAGGGGAA 60.914 55.000 14.38 16.08 39.11 3.97
475 476 2.438800 CTTCGAGGGGAAGGAGTAGA 57.561 55.000 0.00 0.00 46.89 2.59
476 477 2.303175 CTTCGAGGGGAAGGAGTAGAG 58.697 57.143 0.00 0.00 46.89 2.43
477 478 1.592948 TCGAGGGGAAGGAGTAGAGA 58.407 55.000 0.00 0.00 0.00 3.10
478 479 2.136863 TCGAGGGGAAGGAGTAGAGAT 58.863 52.381 0.00 0.00 0.00 2.75
479 480 2.158593 TCGAGGGGAAGGAGTAGAGATG 60.159 54.545 0.00 0.00 0.00 2.90
480 481 1.967779 GAGGGGAAGGAGTAGAGATGC 59.032 57.143 0.00 0.00 0.00 3.91
481 482 1.578215 AGGGGAAGGAGTAGAGATGCT 59.422 52.381 0.00 0.00 0.00 3.79
482 483 1.967779 GGGGAAGGAGTAGAGATGCTC 59.032 57.143 0.00 0.00 0.00 4.26
483 484 2.425683 GGGGAAGGAGTAGAGATGCTCT 60.426 54.545 2.22 2.22 43.83 4.09
484 485 3.304829 GGGAAGGAGTAGAGATGCTCTT 58.695 50.000 1.88 0.00 41.50 2.85
485 486 4.475345 GGGAAGGAGTAGAGATGCTCTTA 58.525 47.826 1.88 0.00 41.50 2.10
486 487 5.083821 GGGAAGGAGTAGAGATGCTCTTAT 58.916 45.833 1.88 0.00 41.50 1.73
487 488 5.047377 GGGAAGGAGTAGAGATGCTCTTATG 60.047 48.000 1.88 0.00 41.50 1.90
488 489 5.047377 GGAAGGAGTAGAGATGCTCTTATGG 60.047 48.000 1.88 0.00 41.50 2.74
489 490 4.415596 AGGAGTAGAGATGCTCTTATGGG 58.584 47.826 1.88 0.00 41.50 4.00
490 491 3.056179 GGAGTAGAGATGCTCTTATGGGC 60.056 52.174 1.88 0.00 41.50 5.36
491 492 2.903135 AGTAGAGATGCTCTTATGGGCC 59.097 50.000 0.00 0.00 41.50 5.80
492 493 0.683973 AGAGATGCTCTTATGGGCCG 59.316 55.000 0.00 0.00 37.60 6.13
493 494 0.681733 GAGATGCTCTTATGGGCCGA 59.318 55.000 0.00 0.00 0.00 5.54
494 495 1.070758 GAGATGCTCTTATGGGCCGAA 59.929 52.381 0.00 0.00 0.00 4.30
495 496 1.490490 AGATGCTCTTATGGGCCGAAA 59.510 47.619 0.00 0.00 0.00 3.46
496 497 2.092429 AGATGCTCTTATGGGCCGAAAA 60.092 45.455 0.00 0.00 0.00 2.29
497 498 2.208132 TGCTCTTATGGGCCGAAAAA 57.792 45.000 0.00 0.00 0.00 1.94
515 516 4.729227 AAAAACGGTGTTCTTGGAATGT 57.271 36.364 0.00 0.00 0.00 2.71
516 517 3.708563 AAACGGTGTTCTTGGAATGTG 57.291 42.857 0.00 0.00 0.00 3.21
517 518 2.631160 ACGGTGTTCTTGGAATGTGA 57.369 45.000 0.00 0.00 0.00 3.58
518 519 2.494059 ACGGTGTTCTTGGAATGTGAG 58.506 47.619 0.00 0.00 0.00 3.51
519 520 2.104111 ACGGTGTTCTTGGAATGTGAGA 59.896 45.455 0.00 0.00 0.00 3.27
520 521 2.738846 CGGTGTTCTTGGAATGTGAGAG 59.261 50.000 0.00 0.00 0.00 3.20
521 522 3.554960 CGGTGTTCTTGGAATGTGAGAGA 60.555 47.826 0.00 0.00 0.00 3.10
522 523 4.389374 GGTGTTCTTGGAATGTGAGAGAA 58.611 43.478 0.00 0.00 0.00 2.87
523 524 4.214332 GGTGTTCTTGGAATGTGAGAGAAC 59.786 45.833 7.41 7.41 43.90 3.01
524 525 4.214332 GTGTTCTTGGAATGTGAGAGAACC 59.786 45.833 10.85 0.00 43.31 3.62
525 526 4.103153 TGTTCTTGGAATGTGAGAGAACCT 59.897 41.667 10.85 0.00 43.31 3.50
526 527 4.543590 TCTTGGAATGTGAGAGAACCTC 57.456 45.455 0.00 0.00 42.30 3.85
527 528 4.163427 TCTTGGAATGTGAGAGAACCTCT 58.837 43.478 0.00 0.00 44.28 3.69
528 529 4.594920 TCTTGGAATGTGAGAGAACCTCTT 59.405 41.667 0.00 0.00 41.35 2.85
529 530 4.982241 TGGAATGTGAGAGAACCTCTTT 57.018 40.909 0.00 0.00 41.35 2.52
530 531 5.310409 TGGAATGTGAGAGAACCTCTTTT 57.690 39.130 0.00 0.00 41.35 2.27
531 532 5.694995 TGGAATGTGAGAGAACCTCTTTTT 58.305 37.500 0.00 0.00 41.35 1.94
564 565 2.849880 TTGATGCGAATTAAGCTGCC 57.150 45.000 0.00 0.00 35.28 4.85
573 574 0.609131 ATTAAGCTGCCGCCAAGTGT 60.609 50.000 0.00 0.00 36.60 3.55
578 579 2.896801 CTGCCGCCAAGTGTCACAC 61.897 63.158 0.00 0.00 34.10 3.82
625 632 0.591659 CCGTGAGTCGAGTCAAGTCA 59.408 55.000 27.17 5.13 42.86 3.41
626 633 1.001706 CCGTGAGTCGAGTCAAGTCAA 60.002 52.381 27.17 3.85 42.86 3.18
629 636 3.301706 GTGAGTCGAGTCAAGTCAAGTC 58.698 50.000 24.06 6.03 0.00 3.01
630 637 2.031944 TGAGTCGAGTCAAGTCAAGTCG 60.032 50.000 20.50 0.00 40.18 4.18
631 638 1.948145 AGTCGAGTCAAGTCAAGTCGT 59.052 47.619 0.00 0.00 39.86 4.34
632 639 2.044860 GTCGAGTCAAGTCAAGTCGTG 58.955 52.381 0.00 0.00 39.86 4.35
633 640 1.674441 TCGAGTCAAGTCAAGTCGTGT 59.326 47.619 0.00 0.00 39.86 4.49
634 641 2.098607 TCGAGTCAAGTCAAGTCGTGTT 59.901 45.455 0.00 0.00 39.86 3.32
635 642 2.468040 CGAGTCAAGTCAAGTCGTGTTC 59.532 50.000 0.00 0.00 35.39 3.18
636 643 2.795470 GAGTCAAGTCAAGTCGTGTTCC 59.205 50.000 0.00 0.00 0.00 3.62
637 644 1.865340 GTCAAGTCAAGTCGTGTTCCC 59.135 52.381 0.00 0.00 0.00 3.97
638 645 0.859232 CAAGTCAAGTCGTGTTCCCG 59.141 55.000 0.00 0.00 0.00 5.14
639 646 0.462789 AAGTCAAGTCGTGTTCCCGT 59.537 50.000 0.00 0.00 0.00 5.28
665 672 1.949133 CGTCTCACACCACACCACG 60.949 63.158 0.00 0.00 0.00 4.94
667 674 3.337889 CTCACACCACACCACGCG 61.338 66.667 3.53 3.53 0.00 6.01
668 675 4.901123 TCACACCACACCACGCGG 62.901 66.667 12.47 0.00 38.77 6.46
671 678 4.602259 CACCACACCACGCGGACT 62.602 66.667 12.47 0.00 35.59 3.85
676 683 4.436998 CACCACGCGGACTCCCTC 62.437 72.222 12.47 0.00 35.59 4.30
683 690 4.862823 CGGACTCCCTCCCCTCCC 62.863 77.778 0.00 0.00 35.21 4.30
687 694 4.825679 CTCCCTCCCCTCCCCCAC 62.826 77.778 0.00 0.00 0.00 4.61
691 698 3.700350 CTCCCCTCCCCCACTCCT 61.700 72.222 0.00 0.00 0.00 3.69
695 702 2.366167 CCTCCCCCACTCCTCCTG 60.366 72.222 0.00 0.00 0.00 3.86
696 703 3.086600 CTCCCCCACTCCTCCTGC 61.087 72.222 0.00 0.00 0.00 4.85
697 704 3.931631 CTCCCCCACTCCTCCTGCA 62.932 68.421 0.00 0.00 0.00 4.41
698 705 3.721706 CCCCCACTCCTCCTGCAC 61.722 72.222 0.00 0.00 0.00 4.57
717 724 0.664466 CACTTTGCTCTGCTCGACGA 60.664 55.000 0.00 0.00 0.00 4.20
718 725 0.664767 ACTTTGCTCTGCTCGACGAC 60.665 55.000 0.00 0.00 0.00 4.34
720 727 3.610791 TTGCTCTGCTCGACGACGG 62.611 63.158 7.55 0.00 40.21 4.79
722 729 2.202362 CTCTGCTCGACGACGGTG 60.202 66.667 7.55 2.34 40.21 4.94
723 730 4.400109 TCTGCTCGACGACGGTGC 62.400 66.667 7.55 12.46 40.21 5.01
724 731 4.406173 CTGCTCGACGACGGTGCT 62.406 66.667 20.35 0.00 38.94 4.40
725 732 4.400109 TGCTCGACGACGGTGCTC 62.400 66.667 20.35 3.98 38.94 4.26
726 733 4.104417 GCTCGACGACGGTGCTCT 62.104 66.667 7.55 0.00 40.21 4.09
727 734 2.098680 CTCGACGACGGTGCTCTC 59.901 66.667 7.55 0.00 40.21 3.20
730 737 0.461516 TCGACGACGGTGCTCTCTAT 60.462 55.000 7.55 0.00 40.21 1.98
731 738 1.202452 TCGACGACGGTGCTCTCTATA 60.202 52.381 7.55 0.00 40.21 1.31
732 739 1.192757 CGACGACGGTGCTCTCTATAG 59.807 57.143 0.00 0.00 35.72 1.31
779 805 4.135153 CCCTCTCCGCGTCCACAG 62.135 72.222 4.92 0.00 0.00 3.66
780 806 4.803426 CCTCTCCGCGTCCACAGC 62.803 72.222 4.92 0.00 0.00 4.40
781 807 4.803426 CTCTCCGCGTCCACAGCC 62.803 72.222 4.92 0.00 0.00 4.85
783 809 4.680237 CTCCGCGTCCACAGCCAA 62.680 66.667 4.92 0.00 0.00 4.52
784 810 4.680237 TCCGCGTCCACAGCCAAG 62.680 66.667 4.92 0.00 0.00 3.61
819 845 6.987404 GCCAAACCAAACCATTTTTCTACTAA 59.013 34.615 0.00 0.00 0.00 2.24
820 846 7.659799 GCCAAACCAAACCATTTTTCTACTAAT 59.340 33.333 0.00 0.00 0.00 1.73
888 914 4.214327 CGCTTCTCCTCCCCGCTC 62.214 72.222 0.00 0.00 0.00 5.03
889 915 4.214327 GCTTCTCCTCCCCGCTCG 62.214 72.222 0.00 0.00 0.00 5.03
890 916 4.214327 CTTCTCCTCCCCGCTCGC 62.214 72.222 0.00 0.00 0.00 5.03
891 917 4.761058 TTCTCCTCCCCGCTCGCT 62.761 66.667 0.00 0.00 0.00 4.93
902 932 0.528466 CCGCTCGCTCTCAGCATAAA 60.528 55.000 0.00 0.00 42.58 1.40
913 943 3.899700 GCATAAAAGGCCGGGGCG 61.900 66.667 15.57 0.46 43.06 6.13
914 944 3.899700 CATAAAAGGCCGGGGCGC 61.900 66.667 15.57 0.00 43.06 6.53
924 954 4.787286 CGGGGCGCCATTGTGGTA 62.787 66.667 30.85 0.00 40.46 3.25
926 956 3.518068 GGGCGCCATTGTGGTAGC 61.518 66.667 30.85 1.84 40.46 3.58
927 957 2.749839 GGCGCCATTGTGGTAGCA 60.750 61.111 24.80 0.00 42.22 3.49
951 981 2.420642 CAACTCTGCTGCTTCTTGCTA 58.579 47.619 0.00 0.00 43.37 3.49
990 1023 2.642427 TCACATCCAATTCCATCACCG 58.358 47.619 0.00 0.00 0.00 4.94
991 1024 2.026356 TCACATCCAATTCCATCACCGT 60.026 45.455 0.00 0.00 0.00 4.83
994 1027 0.611200 TCCAATTCCATCACCGTCGT 59.389 50.000 0.00 0.00 0.00 4.34
997 1030 1.082117 AATTCCATCACCGTCGTCGC 61.082 55.000 0.00 0.00 35.54 5.19
1079 1112 2.597217 CAAGGGACGCCAAAGCCA 60.597 61.111 0.00 0.00 34.57 4.75
1080 1113 2.197324 AAGGGACGCCAAAGCCAA 59.803 55.556 0.00 0.00 34.57 4.52
1081 1114 1.456705 AAGGGACGCCAAAGCCAAA 60.457 52.632 0.00 0.00 34.57 3.28
1082 1115 0.831711 AAGGGACGCCAAAGCCAAAT 60.832 50.000 0.00 0.00 34.57 2.32
1083 1116 1.215382 GGGACGCCAAAGCCAAATC 59.785 57.895 0.00 0.00 34.57 2.17
1084 1117 1.154035 GGACGCCAAAGCCAAATCG 60.154 57.895 0.00 0.00 34.57 3.34
1092 1125 0.243636 AAAGCCAAATCGAAAGCCCG 59.756 50.000 0.00 0.00 0.00 6.13
1102 1135 1.002366 CGAAAGCCCGTCATCTGAAG 58.998 55.000 0.00 0.00 0.00 3.02
1109 1154 2.036992 GCCCGTCATCTGAAGATCATCT 59.963 50.000 0.00 0.00 31.21 2.90
1113 1158 4.157649 CGTCATCTGAAGATCATCTAGCG 58.842 47.826 0.00 0.00 31.21 4.26
1116 1161 6.083630 GTCATCTGAAGATCATCTAGCGTAC 58.916 44.000 0.00 0.00 31.21 3.67
1145 1190 1.653151 GACCAGGTAACGAAGATGGC 58.347 55.000 0.00 0.00 46.39 4.40
1148 1193 1.278238 CAGGTAACGAAGATGGCGTC 58.722 55.000 0.00 0.00 41.75 5.19
1149 1194 0.175073 AGGTAACGAAGATGGCGTCC 59.825 55.000 2.37 0.00 41.75 4.79
1150 1195 1.143969 GGTAACGAAGATGGCGTCCG 61.144 60.000 2.37 3.42 41.75 4.79
1151 1196 0.457337 GTAACGAAGATGGCGTCCGT 60.457 55.000 2.37 4.11 41.75 4.69
1152 1197 1.093972 TAACGAAGATGGCGTCCGTA 58.906 50.000 10.65 0.00 41.75 4.02
1153 1198 0.244450 AACGAAGATGGCGTCCGTAA 59.756 50.000 10.65 0.00 41.75 3.18
1154 1199 0.457337 ACGAAGATGGCGTCCGTAAC 60.457 55.000 8.89 0.00 37.42 2.50
1155 1200 1.143969 CGAAGATGGCGTCCGTAACC 61.144 60.000 2.37 0.00 0.00 2.85
1157 1202 1.880819 AAGATGGCGTCCGTAACCGT 61.881 55.000 2.37 0.00 0.00 4.83
1159 1204 2.824071 GATGGCGTCCGTAACCGTGT 62.824 60.000 0.00 0.00 0.00 4.49
1164 1209 1.611592 CGTCCGTAACCGTGTCTTGC 61.612 60.000 0.00 0.00 0.00 4.01
1174 1219 1.215014 CGTGTCTTGCTCAGTCGCAA 61.215 55.000 0.00 0.00 46.73 4.85
1182 1227 0.663153 GCTCAGTCGCAACTTGGTTT 59.337 50.000 0.00 0.00 31.71 3.27
1192 1237 3.496884 CGCAACTTGGTTTTACTCTGCTA 59.503 43.478 0.00 0.00 0.00 3.49
1210 1261 8.754080 ACTCTGCTACAAGTTTCTATTCTACAT 58.246 33.333 0.00 0.00 0.00 2.29
1290 1429 3.565214 TTGGCAGGTGAAGGCGGA 61.565 61.111 0.00 0.00 0.00 5.54
1355 1494 0.804989 GGATTTCACCAGGAGCAACG 59.195 55.000 0.00 0.00 0.00 4.10
1357 1496 2.151202 GATTTCACCAGGAGCAACGAA 58.849 47.619 0.00 0.00 0.00 3.85
1385 1524 2.171448 GGTGCTCTCTCTCTCTCTCTCT 59.829 54.545 0.00 0.00 0.00 3.10
1388 1540 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
1392 1544 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1393 1545 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1394 1546 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1395 1547 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1396 1548 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1397 1549 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1400 1552 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1402 1554 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1403 1555 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1405 1557 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1406 1558 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1407 1559 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1409 1561 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1410 1562 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1411 1563 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1412 1564 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1413 1565 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1416 1568 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1418 1570 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1432 1584 9.784531 CTCTCTCTCTCTCTCTTCAGTTATTAT 57.215 37.037 0.00 0.00 0.00 1.28
1470 1631 6.290294 AGTTCTGAATTTTTCATGGATGGG 57.710 37.500 0.00 0.00 39.30 4.00
1553 1722 2.125326 CCGTACGAGGAGGCCATCA 61.125 63.158 18.76 0.00 0.00 3.07
1596 1765 1.915614 GCCTACGACGAGGACAACGA 61.916 60.000 14.93 0.00 39.15 3.85
1661 1830 0.759812 TGGTGTCCGGTGGTGAACTA 60.760 55.000 0.00 0.00 0.00 2.24
1663 1832 1.202675 GGTGTCCGGTGGTGAACTAAA 60.203 52.381 0.00 0.00 0.00 1.85
1664 1833 2.563702 GTGTCCGGTGGTGAACTAAAA 58.436 47.619 0.00 0.00 0.00 1.52
1665 1834 3.143728 GTGTCCGGTGGTGAACTAAAAT 58.856 45.455 0.00 0.00 0.00 1.82
1666 1835 3.058501 GTGTCCGGTGGTGAACTAAAATG 60.059 47.826 0.00 0.00 0.00 2.32
1667 1836 2.486592 GTCCGGTGGTGAACTAAAATGG 59.513 50.000 0.00 0.00 0.00 3.16
1668 1837 1.201414 CCGGTGGTGAACTAAAATGGC 59.799 52.381 0.00 0.00 0.00 4.40
1669 1838 2.159382 CGGTGGTGAACTAAAATGGCT 58.841 47.619 0.00 0.00 0.00 4.75
1670 1839 2.556622 CGGTGGTGAACTAAAATGGCTT 59.443 45.455 0.00 0.00 0.00 4.35
1671 1840 3.754323 CGGTGGTGAACTAAAATGGCTTA 59.246 43.478 0.00 0.00 0.00 3.09
1674 1843 5.417580 GGTGGTGAACTAAAATGGCTTATGA 59.582 40.000 0.00 0.00 0.00 2.15
1675 1844 6.096846 GGTGGTGAACTAAAATGGCTTATGAT 59.903 38.462 0.00 0.00 0.00 2.45
1676 1845 7.196331 GTGGTGAACTAAAATGGCTTATGATC 58.804 38.462 0.00 0.00 0.00 2.92
1677 1846 6.038161 TGGTGAACTAAAATGGCTTATGATCG 59.962 38.462 0.00 0.00 0.00 3.69
1678 1847 5.909610 GTGAACTAAAATGGCTTATGATCGC 59.090 40.000 0.00 0.00 0.00 4.58
1679 1848 5.008613 TGAACTAAAATGGCTTATGATCGCC 59.991 40.000 2.63 2.63 46.46 5.54
1680 1849 4.718961 ACTAAAATGGCTTATGATCGCCT 58.281 39.130 10.24 0.00 46.42 5.52
1681 1850 5.133221 ACTAAAATGGCTTATGATCGCCTT 58.867 37.500 10.24 2.09 46.42 4.35
1682 1851 6.296026 ACTAAAATGGCTTATGATCGCCTTA 58.704 36.000 10.24 1.61 46.42 2.69
1683 1852 6.942576 ACTAAAATGGCTTATGATCGCCTTAT 59.057 34.615 10.24 0.00 46.42 1.73
1684 1853 6.655078 AAAATGGCTTATGATCGCCTTATT 57.345 33.333 10.24 1.25 46.42 1.40
1685 1854 5.633830 AATGGCTTATGATCGCCTTATTG 57.366 39.130 10.24 0.00 46.42 1.90
1686 1855 3.411446 TGGCTTATGATCGCCTTATTGG 58.589 45.455 10.24 0.00 46.42 3.16
1687 1856 3.181445 TGGCTTATGATCGCCTTATTGGT 60.181 43.478 10.24 0.00 46.42 3.67
1688 1857 5.281533 TGGCTTATGATCGCCTTATTGGTG 61.282 45.833 10.24 0.00 46.42 4.17
1689 1858 3.189287 GCTTATGATCGCCTTATTGGTGG 59.811 47.826 0.00 0.00 46.01 4.61
1701 1870 5.439721 CCTTATTGGTGGTGATCTCATTCA 58.560 41.667 0.00 0.00 0.00 2.57
1712 1881 0.182061 TCTCATTCATCTGCCTGCCC 59.818 55.000 0.00 0.00 0.00 5.36
1713 1882 0.106868 CTCATTCATCTGCCTGCCCA 60.107 55.000 0.00 0.00 0.00 5.36
1714 1883 0.106868 TCATTCATCTGCCTGCCCAG 60.107 55.000 0.00 0.00 0.00 4.45
1715 1884 1.455217 ATTCATCTGCCTGCCCAGC 60.455 57.895 0.00 0.00 32.87 4.85
1716 1885 2.923634 ATTCATCTGCCTGCCCAGCC 62.924 60.000 0.00 0.00 32.87 4.85
1814 1983 1.813859 CTGCGTTACCGGGAGATCA 59.186 57.895 6.32 0.00 33.68 2.92
1857 2026 2.885135 ACCATCATCTTGCCACTGAA 57.115 45.000 0.00 0.00 0.00 3.02
1892 2061 4.592485 AGACTGGTCTTGTGAGTTACTG 57.408 45.455 0.00 0.00 36.31 2.74
1893 2062 3.961408 AGACTGGTCTTGTGAGTTACTGT 59.039 43.478 0.00 0.00 36.31 3.55
1894 2063 5.138276 AGACTGGTCTTGTGAGTTACTGTA 58.862 41.667 0.00 0.00 36.31 2.74
1904 2073 6.834168 TGTGAGTTACTGTATGTCTCATGA 57.166 37.500 15.44 0.00 37.46 3.07
1905 2074 7.410120 TGTGAGTTACTGTATGTCTCATGAT 57.590 36.000 15.44 0.00 37.46 2.45
1906 2075 8.519799 TGTGAGTTACTGTATGTCTCATGATA 57.480 34.615 15.44 0.00 37.46 2.15
1907 2076 8.624776 TGTGAGTTACTGTATGTCTCATGATAG 58.375 37.037 15.44 0.00 37.46 2.08
1908 2077 8.625651 GTGAGTTACTGTATGTCTCATGATAGT 58.374 37.037 15.44 0.00 37.46 2.12
1909 2078 9.847224 TGAGTTACTGTATGTCTCATGATAGTA 57.153 33.333 0.00 0.00 31.51 1.82
1956 2125 1.013005 CATCTCTGGCGCCGATCATC 61.013 60.000 23.90 0.00 0.00 2.92
1972 2141 3.426309 ATCGAGGCTGCAATGGGGG 62.426 63.158 0.50 0.00 0.00 5.40
1980 2149 0.331278 CTGCAATGGGGGTAGTCCAA 59.669 55.000 0.00 0.00 37.87 3.53
2022 2191 3.007723 ACATCCTGCTGATAATCGCTGAT 59.992 43.478 0.00 0.00 30.56 2.90
2054 2223 0.454196 AACCGCCAGTTTTGTGTGTC 59.546 50.000 0.00 0.00 33.89 3.67
2056 2225 0.738389 CCGCCAGTTTTGTGTGTCTT 59.262 50.000 0.00 0.00 0.00 3.01
2099 2294 4.810491 ACATTGTCTGAATTTTTGTGTGGC 59.190 37.500 0.00 0.00 0.00 5.01
2186 2381 3.794028 GGACGAATCAAGATCAGAGAACG 59.206 47.826 0.00 3.56 0.00 3.95
2224 2419 0.627451 TTCAGGCCCTCATTCATGCT 59.373 50.000 0.00 0.00 0.00 3.79
2307 2508 6.866010 TGCATATGTTCTGGTGACATTATC 57.134 37.500 4.29 0.00 41.51 1.75
2396 2597 1.300233 GGGACGACGATCAGATGCC 60.300 63.158 0.00 0.00 0.00 4.40
2490 2691 1.214673 AGAGGGCATGCTCATTCATGT 59.785 47.619 22.09 0.00 44.20 3.21
2501 2702 5.121105 TGCTCATTCATGTCATGTCCTAAG 58.879 41.667 12.54 6.65 0.00 2.18
2514 2715 4.048970 TGTCCTAAGCTAACTCAGTCCT 57.951 45.455 0.00 0.00 0.00 3.85
2573 2774 4.096984 GTGGATTTCACCAAGATCATGTCC 59.903 45.833 0.00 0.00 41.87 4.02
2574 2775 4.263860 TGGATTTCACCAAGATCATGTCCA 60.264 41.667 0.00 0.00 36.96 4.02
2645 2846 2.243810 GAGAAGATCCCGAGCCAGTAT 58.756 52.381 0.00 0.00 0.00 2.12
2678 2879 2.361119 CAGCCAGCGTATCAGGTACTAA 59.639 50.000 0.00 0.00 36.02 2.24
2679 2880 3.005897 CAGCCAGCGTATCAGGTACTAAT 59.994 47.826 0.00 0.00 36.02 1.73
2686 2887 4.681942 GCGTATCAGGTACTAATCAGCAAG 59.318 45.833 0.00 0.00 36.02 4.01
2698 2901 6.471146 ACTAATCAGCAAGTCAGAGAAATGT 58.529 36.000 0.00 0.00 0.00 2.71
2827 3031 0.043183 TCCTCCTCCATCCTGAGCAA 59.957 55.000 0.00 0.00 0.00 3.91
2879 3083 6.327365 AGTCAGGTTCATGATATGGTCACATA 59.673 38.462 0.00 0.00 43.31 2.29
2882 3086 6.648310 CAGGTTCATGATATGGTCACATAGTC 59.352 42.308 0.00 0.00 42.48 2.59
3103 3315 4.687483 CCACCTGAATCAGCAAAAATGAAC 59.313 41.667 4.40 0.00 0.00 3.18
3125 3337 7.174253 TGAACTGTGGTGGTCATATAAAGAAAC 59.826 37.037 0.00 0.00 0.00 2.78
3151 3363 6.432783 CCAGGGTAAAGTGATATGTTGAAACA 59.567 38.462 0.00 0.00 44.06 2.83
3165 3377 4.399618 TGTTGAAACAAGACGATTTTCCCA 59.600 37.500 0.00 0.00 35.67 4.37
3199 3411 4.767928 ACATCTTCACTATATCCCGAGTCC 59.232 45.833 0.00 0.00 0.00 3.85
3346 3558 9.965824 CTAATGTTCTCTTTGCCTTTTCTTTTA 57.034 29.630 0.00 0.00 0.00 1.52
3363 3575 6.627395 TCTTTTATCGAAACAAAGGAGCAA 57.373 33.333 12.06 0.00 0.00 3.91
3418 3630 1.344438 CGCTGCTATATCAGGGGTTCA 59.656 52.381 11.68 0.00 41.57 3.18
3454 3666 3.948702 GAGGTCTCCTCTGCCTCC 58.051 66.667 8.38 0.00 46.41 4.30
3560 3772 1.688311 CCCTATTGTCGGACTCCTCCA 60.688 57.143 9.88 0.00 36.12 3.86
3568 3780 1.001760 GGACTCCTCCACCTGCCTA 59.998 63.158 0.00 0.00 36.42 3.93
3577 3789 0.835941 CCACCTGCCTATTGAGCTCT 59.164 55.000 16.19 0.00 0.00 4.09
3742 3954 3.827817 TCCTCTAGTTCCTTGTGGAGA 57.172 47.619 0.00 0.00 44.24 3.71
3798 4015 2.864946 CAGTTCAGCTTCTCATGGATCG 59.135 50.000 0.00 0.00 0.00 3.69
3810 4027 4.097135 TCTCATGGATCGAGAAGACTGTTC 59.903 45.833 0.00 0.00 36.59 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.461431 GCCTCTCGGAAAGGGAAAAATAAA 59.539 41.667 0.00 0.00 34.26 1.40
1 2 4.014406 GCCTCTCGGAAAGGGAAAAATAA 58.986 43.478 0.00 0.00 34.26 1.40
2 3 3.009695 TGCCTCTCGGAAAGGGAAAAATA 59.990 43.478 0.00 0.00 34.26 1.40
3 4 2.225017 TGCCTCTCGGAAAGGGAAAAAT 60.225 45.455 0.00 0.00 34.26 1.82
4 5 1.144093 TGCCTCTCGGAAAGGGAAAAA 59.856 47.619 0.00 0.00 34.26 1.94
5 6 0.768622 TGCCTCTCGGAAAGGGAAAA 59.231 50.000 0.00 0.00 34.26 2.29
6 7 0.991920 ATGCCTCTCGGAAAGGGAAA 59.008 50.000 0.00 0.00 37.81 3.13
7 8 0.253044 CATGCCTCTCGGAAAGGGAA 59.747 55.000 0.00 0.00 37.81 3.97
8 9 0.617535 TCATGCCTCTCGGAAAGGGA 60.618 55.000 0.00 0.00 38.73 4.20
9 10 0.462759 GTCATGCCTCTCGGAAAGGG 60.463 60.000 0.00 0.00 34.26 3.95
10 11 0.462759 GGTCATGCCTCTCGGAAAGG 60.463 60.000 0.00 0.00 36.95 3.11
11 12 0.807667 CGGTCATGCCTCTCGGAAAG 60.808 60.000 4.92 0.00 34.25 2.62
12 13 1.218047 CGGTCATGCCTCTCGGAAA 59.782 57.895 4.92 0.00 34.25 3.13
13 14 1.982395 ACGGTCATGCCTCTCGGAA 60.982 57.895 4.92 0.00 34.25 4.30
14 15 2.362503 ACGGTCATGCCTCTCGGA 60.363 61.111 4.92 0.00 34.25 4.55
15 16 2.202797 CACGGTCATGCCTCTCGG 60.203 66.667 4.92 0.00 34.25 4.63
16 17 1.517257 GTCACGGTCATGCCTCTCG 60.517 63.158 4.92 0.00 34.25 4.04
17 18 0.179124 GAGTCACGGTCATGCCTCTC 60.179 60.000 4.92 4.28 34.25 3.20
18 19 0.613292 AGAGTCACGGTCATGCCTCT 60.613 55.000 0.00 0.00 34.25 3.69
19 20 0.179124 GAGAGTCACGGTCATGCCTC 60.179 60.000 0.00 0.00 34.25 4.70
20 21 1.893786 GAGAGTCACGGTCATGCCT 59.106 57.895 0.00 0.00 34.25 4.75
21 22 1.517257 CGAGAGTCACGGTCATGCC 60.517 63.158 1.62 0.00 0.00 4.40
22 23 2.161486 GCGAGAGTCACGGTCATGC 61.161 63.158 11.95 0.00 0.00 4.06
23 24 1.869574 CGCGAGAGTCACGGTCATG 60.870 63.158 11.95 0.00 0.00 3.07
24 25 1.583495 TTCGCGAGAGTCACGGTCAT 61.583 55.000 9.59 0.00 43.69 3.06
25 26 1.788067 TTTCGCGAGAGTCACGGTCA 61.788 55.000 9.59 0.00 43.69 4.02
26 27 1.066114 CTTTCGCGAGAGTCACGGTC 61.066 60.000 17.92 0.00 43.69 4.79
27 28 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
28 29 2.437343 GCTTTCGCGAGAGTCACGG 61.437 63.158 25.34 2.90 43.69 4.94
29 30 1.729484 TGCTTTCGCGAGAGTCACG 60.729 57.895 25.34 5.53 43.69 4.35
30 31 0.939577 TGTGCTTTCGCGAGAGTCAC 60.940 55.000 29.56 29.56 43.69 3.67
31 32 0.249280 TTGTGCTTTCGCGAGAGTCA 60.249 50.000 25.34 20.22 43.69 3.41
32 33 0.161870 GTTGTGCTTTCGCGAGAGTC 59.838 55.000 25.34 18.16 43.69 3.36
33 34 1.222115 GGTTGTGCTTTCGCGAGAGT 61.222 55.000 25.34 0.00 43.69 3.24
34 35 1.493311 GGTTGTGCTTTCGCGAGAG 59.507 57.895 21.42 21.42 43.69 3.20
35 36 2.307309 CGGTTGTGCTTTCGCGAGA 61.307 57.895 9.59 3.35 39.65 4.04
36 37 2.170985 CGGTTGTGCTTTCGCGAG 59.829 61.111 9.59 0.00 39.65 5.03
37 38 2.586635 ACGGTTGTGCTTTCGCGA 60.587 55.556 3.71 3.71 39.65 5.87
38 39 2.425124 CACGGTTGTGCTTTCGCG 60.425 61.111 0.00 0.00 39.67 5.87
56 57 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
57 58 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
58 59 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
59 60 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
64 65 1.172812 AGAGCCACGGTTTTGCTTCC 61.173 55.000 0.00 0.00 34.99 3.46
65 66 0.238553 GAGAGCCACGGTTTTGCTTC 59.761 55.000 0.00 0.00 34.99 3.86
66 67 1.507141 CGAGAGCCACGGTTTTGCTT 61.507 55.000 0.00 0.00 34.99 3.91
67 68 1.961277 CGAGAGCCACGGTTTTGCT 60.961 57.895 0.00 0.00 38.24 3.91
68 69 2.556287 CGAGAGCCACGGTTTTGC 59.444 61.111 0.00 0.00 0.00 3.68
112 113 3.376540 CGTGCCTTTCGGAAATGAAAAA 58.623 40.909 9.53 0.00 37.40 1.94
113 114 3.006659 CGTGCCTTTCGGAAATGAAAA 57.993 42.857 9.53 0.00 37.40 2.29
114 115 2.697431 CGTGCCTTTCGGAAATGAAA 57.303 45.000 9.53 0.00 36.48 2.69
123 124 1.157870 AGTCACAACCGTGCCTTTCG 61.158 55.000 0.00 0.00 43.28 3.46
124 125 0.586802 GAGTCACAACCGTGCCTTTC 59.413 55.000 0.00 0.00 43.28 2.62
125 126 0.180406 AGAGTCACAACCGTGCCTTT 59.820 50.000 0.00 0.00 43.28 3.11
126 127 0.249911 GAGAGTCACAACCGTGCCTT 60.250 55.000 0.00 0.00 43.28 4.35
127 128 1.367840 GAGAGTCACAACCGTGCCT 59.632 57.895 0.00 0.00 43.28 4.75
128 129 2.022129 CGAGAGTCACAACCGTGCC 61.022 63.158 0.00 0.00 43.28 5.01
129 130 2.658707 GCGAGAGTCACAACCGTGC 61.659 63.158 0.00 0.00 43.28 5.34
130 131 2.365068 CGCGAGAGTCACAACCGTG 61.365 63.158 0.00 0.00 45.08 4.94
131 132 2.050351 CGCGAGAGTCACAACCGT 60.050 61.111 0.00 0.00 0.00 4.83
132 133 0.937699 TTTCGCGAGAGTCACAACCG 60.938 55.000 9.59 0.00 43.69 4.44
133 134 1.214367 TTTTCGCGAGAGTCACAACC 58.786 50.000 9.59 0.00 43.69 3.77
151 152 1.008329 TCGCGAAAGTCACGGTTTTT 58.992 45.000 6.20 0.00 0.00 1.94
152 153 1.008329 TTCGCGAAAGTCACGGTTTT 58.992 45.000 21.14 0.00 0.00 2.43
153 154 1.004292 CTTTCGCGAAAGTCACGGTTT 60.004 47.619 40.16 0.00 42.02 3.27
154 155 0.580104 CTTTCGCGAAAGTCACGGTT 59.420 50.000 40.16 0.00 42.02 4.44
155 156 0.249155 TCTTTCGCGAAAGTCACGGT 60.249 50.000 43.49 0.00 45.88 4.83
156 157 0.856641 TTCTTTCGCGAAAGTCACGG 59.143 50.000 43.49 27.97 45.88 4.94
157 158 2.638628 TTTCTTTCGCGAAAGTCACG 57.361 45.000 43.49 28.57 45.88 4.35
221 222 8.512138 GGTCTTCCTTATCTTTTCGATCAAAAA 58.488 33.333 0.00 0.00 33.40 1.94
222 223 7.148474 CGGTCTTCCTTATCTTTTCGATCAAAA 60.148 37.037 0.00 0.00 33.48 2.44
223 224 6.312918 CGGTCTTCCTTATCTTTTCGATCAAA 59.687 38.462 0.00 0.00 33.48 2.69
224 225 5.810587 CGGTCTTCCTTATCTTTTCGATCAA 59.189 40.000 0.00 0.00 33.48 2.57
225 226 5.105473 ACGGTCTTCCTTATCTTTTCGATCA 60.105 40.000 0.00 0.00 33.48 2.92
226 227 5.232414 CACGGTCTTCCTTATCTTTTCGATC 59.768 44.000 0.00 0.00 33.48 3.69
227 228 5.109903 CACGGTCTTCCTTATCTTTTCGAT 58.890 41.667 0.00 0.00 36.11 3.59
228 229 4.491676 CACGGTCTTCCTTATCTTTTCGA 58.508 43.478 0.00 0.00 0.00 3.71
229 230 3.617263 CCACGGTCTTCCTTATCTTTTCG 59.383 47.826 0.00 0.00 0.00 3.46
230 231 3.939592 CCCACGGTCTTCCTTATCTTTTC 59.060 47.826 0.00 0.00 0.00 2.29
231 232 3.585732 TCCCACGGTCTTCCTTATCTTTT 59.414 43.478 0.00 0.00 0.00 2.27
232 233 3.178865 TCCCACGGTCTTCCTTATCTTT 58.821 45.455 0.00 0.00 0.00 2.52
233 234 2.829023 TCCCACGGTCTTCCTTATCTT 58.171 47.619 0.00 0.00 0.00 2.40
234 235 2.544844 TCCCACGGTCTTCCTTATCT 57.455 50.000 0.00 0.00 0.00 1.98
235 236 3.622166 TTTCCCACGGTCTTCCTTATC 57.378 47.619 0.00 0.00 0.00 1.75
236 237 3.560668 GGTTTTCCCACGGTCTTCCTTAT 60.561 47.826 0.00 0.00 0.00 1.73
237 238 2.224597 GGTTTTCCCACGGTCTTCCTTA 60.225 50.000 0.00 0.00 0.00 2.69
238 239 1.478105 GGTTTTCCCACGGTCTTCCTT 60.478 52.381 0.00 0.00 0.00 3.36
239 240 0.109913 GGTTTTCCCACGGTCTTCCT 59.890 55.000 0.00 0.00 0.00 3.36
240 241 0.179012 TGGTTTTCCCACGGTCTTCC 60.179 55.000 0.00 0.00 38.72 3.46
241 242 1.682740 TTGGTTTTCCCACGGTCTTC 58.317 50.000 0.00 0.00 45.19 2.87
242 243 2.146920 TTTGGTTTTCCCACGGTCTT 57.853 45.000 0.00 0.00 45.19 3.01
243 244 1.752498 GTTTTGGTTTTCCCACGGTCT 59.248 47.619 0.00 0.00 45.19 3.85
244 245 1.534385 CGTTTTGGTTTTCCCACGGTC 60.534 52.381 0.00 0.00 45.19 4.79
245 246 0.456628 CGTTTTGGTTTTCCCACGGT 59.543 50.000 0.00 0.00 45.19 4.83
246 247 0.456628 ACGTTTTGGTTTTCCCACGG 59.543 50.000 0.00 0.00 45.19 4.94
247 248 1.830086 GACGTTTTGGTTTTCCCACG 58.170 50.000 0.00 0.00 45.19 4.94
248 249 1.401199 TCGACGTTTTGGTTTTCCCAC 59.599 47.619 0.00 0.00 45.19 4.61
249 250 1.747709 TCGACGTTTTGGTTTTCCCA 58.252 45.000 0.00 0.00 43.27 4.37
250 251 2.847959 TTCGACGTTTTGGTTTTCCC 57.152 45.000 0.00 0.00 39.73 3.97
251 252 3.304026 GGTTTTCGACGTTTTGGTTTTCC 59.696 43.478 0.00 0.00 41.14 3.13
252 253 3.304026 GGGTTTTCGACGTTTTGGTTTTC 59.696 43.478 0.00 0.00 0.00 2.29
253 254 3.252400 GGGTTTTCGACGTTTTGGTTTT 58.748 40.909 0.00 0.00 0.00 2.43
254 255 2.417107 GGGGTTTTCGACGTTTTGGTTT 60.417 45.455 0.00 0.00 0.00 3.27
255 256 1.134753 GGGGTTTTCGACGTTTTGGTT 59.865 47.619 0.00 0.00 0.00 3.67
256 257 0.740149 GGGGTTTTCGACGTTTTGGT 59.260 50.000 0.00 0.00 0.00 3.67
257 258 0.031043 GGGGGTTTTCGACGTTTTGG 59.969 55.000 0.00 0.00 0.00 3.28
258 259 0.317186 CGGGGGTTTTCGACGTTTTG 60.317 55.000 0.00 0.00 0.00 2.44
259 260 0.463474 TCGGGGGTTTTCGACGTTTT 60.463 50.000 0.00 0.00 0.00 2.43
260 261 0.463474 TTCGGGGGTTTTCGACGTTT 60.463 50.000 0.00 0.00 34.99 3.60
261 262 0.463474 TTTCGGGGGTTTTCGACGTT 60.463 50.000 0.00 0.00 34.99 3.99
262 263 0.463474 TTTTCGGGGGTTTTCGACGT 60.463 50.000 0.00 0.00 34.99 4.34
263 264 0.662085 TTTTTCGGGGGTTTTCGACG 59.338 50.000 0.00 0.00 34.99 5.12
281 282 9.600646 CGTGTTTTTGACTTTTTAAATGGTTTT 57.399 25.926 0.00 0.00 0.00 2.43
282 283 8.775527 ACGTGTTTTTGACTTTTTAAATGGTTT 58.224 25.926 0.00 0.00 0.00 3.27
283 284 8.224437 CACGTGTTTTTGACTTTTTAAATGGTT 58.776 29.630 7.58 0.00 0.00 3.67
284 285 7.622464 GCACGTGTTTTTGACTTTTTAAATGGT 60.622 33.333 18.38 0.00 0.00 3.55
285 286 6.680758 GCACGTGTTTTTGACTTTTTAAATGG 59.319 34.615 18.38 0.00 0.00 3.16
286 287 6.403777 CGCACGTGTTTTTGACTTTTTAAATG 59.596 34.615 18.38 0.00 0.00 2.32
287 288 6.308282 TCGCACGTGTTTTTGACTTTTTAAAT 59.692 30.769 18.38 0.00 0.00 1.40
288 289 5.628193 TCGCACGTGTTTTTGACTTTTTAAA 59.372 32.000 18.38 0.00 0.00 1.52
289 290 5.152097 TCGCACGTGTTTTTGACTTTTTAA 58.848 33.333 18.38 0.00 0.00 1.52
290 291 4.720090 TCGCACGTGTTTTTGACTTTTTA 58.280 34.783 18.38 0.00 0.00 1.52
291 292 3.566523 TCGCACGTGTTTTTGACTTTTT 58.433 36.364 18.38 0.00 0.00 1.94
292 293 3.204597 TCGCACGTGTTTTTGACTTTT 57.795 38.095 18.38 0.00 0.00 2.27
293 294 2.904011 TCGCACGTGTTTTTGACTTT 57.096 40.000 18.38 0.00 0.00 2.66
294 295 2.904011 TTCGCACGTGTTTTTGACTT 57.096 40.000 18.38 0.00 0.00 3.01
295 296 2.904011 TTTCGCACGTGTTTTTGACT 57.096 40.000 18.38 0.00 0.00 3.41
296 297 3.955887 TTTTTCGCACGTGTTTTTGAC 57.044 38.095 18.38 0.00 0.00 3.18
326 327 5.017294 TGCTCCTTTCGGATTTTGTTTTT 57.983 34.783 0.00 0.00 39.01 1.94
327 328 4.664150 TGCTCCTTTCGGATTTTGTTTT 57.336 36.364 0.00 0.00 39.01 2.43
328 329 4.321974 GGATGCTCCTTTCGGATTTTGTTT 60.322 41.667 0.00 0.00 39.01 2.83
329 330 3.193479 GGATGCTCCTTTCGGATTTTGTT 59.807 43.478 0.00 0.00 39.01 2.83
330 331 2.755103 GGATGCTCCTTTCGGATTTTGT 59.245 45.455 0.00 0.00 39.01 2.83
331 332 2.754552 TGGATGCTCCTTTCGGATTTTG 59.245 45.455 4.21 0.00 39.01 2.44
332 333 3.019564 CTGGATGCTCCTTTCGGATTTT 58.980 45.455 4.21 0.00 39.01 1.82
333 334 2.239654 TCTGGATGCTCCTTTCGGATTT 59.760 45.455 4.21 0.00 39.01 2.17
334 335 1.839994 TCTGGATGCTCCTTTCGGATT 59.160 47.619 4.21 0.00 39.01 3.01
335 336 1.415659 CTCTGGATGCTCCTTTCGGAT 59.584 52.381 4.21 0.00 39.01 4.18
336 337 0.826715 CTCTGGATGCTCCTTTCGGA 59.173 55.000 4.21 0.00 37.46 4.55
337 338 0.539051 ACTCTGGATGCTCCTTTCGG 59.461 55.000 4.21 0.00 37.46 4.30
338 339 2.796383 CGTACTCTGGATGCTCCTTTCG 60.796 54.545 4.21 0.00 37.46 3.46
339 340 2.482142 CCGTACTCTGGATGCTCCTTTC 60.482 54.545 4.21 0.00 37.46 2.62
340 341 1.482593 CCGTACTCTGGATGCTCCTTT 59.517 52.381 4.21 0.00 37.46 3.11
341 342 1.115467 CCGTACTCTGGATGCTCCTT 58.885 55.000 4.21 0.00 37.46 3.36
342 343 1.395826 GCCGTACTCTGGATGCTCCT 61.396 60.000 4.21 0.00 37.46 3.69
343 344 1.068250 GCCGTACTCTGGATGCTCC 59.932 63.158 0.00 0.00 36.96 4.70
344 345 0.390860 ATGCCGTACTCTGGATGCTC 59.609 55.000 0.00 0.00 0.00 4.26
345 346 0.105593 CATGCCGTACTCTGGATGCT 59.894 55.000 0.00 0.00 0.00 3.79
346 347 0.179073 ACATGCCGTACTCTGGATGC 60.179 55.000 0.00 0.00 0.00 3.91
347 348 1.575244 CACATGCCGTACTCTGGATG 58.425 55.000 0.00 6.79 0.00 3.51
348 349 0.465705 CCACATGCCGTACTCTGGAT 59.534 55.000 0.00 0.00 0.00 3.41
349 350 1.897423 CCACATGCCGTACTCTGGA 59.103 57.895 0.00 0.00 0.00 3.86
350 351 1.815421 GCCACATGCCGTACTCTGG 60.815 63.158 0.00 0.00 0.00 3.86
351 352 2.167219 CGCCACATGCCGTACTCTG 61.167 63.158 0.00 0.00 36.24 3.35
352 353 1.884075 TTCGCCACATGCCGTACTCT 61.884 55.000 0.00 0.00 36.24 3.24
353 354 0.810031 ATTCGCCACATGCCGTACTC 60.810 55.000 0.00 0.00 36.24 2.59
354 355 1.089481 CATTCGCCACATGCCGTACT 61.089 55.000 0.00 0.00 36.24 2.73
355 356 1.351707 CATTCGCCACATGCCGTAC 59.648 57.895 0.00 0.00 36.24 3.67
356 357 1.817520 CCATTCGCCACATGCCGTA 60.818 57.895 0.00 0.00 36.24 4.02
357 358 3.133464 CCATTCGCCACATGCCGT 61.133 61.111 0.00 0.00 36.24 5.68
358 359 4.557605 GCCATTCGCCACATGCCG 62.558 66.667 0.00 0.00 36.24 5.69
359 360 1.383456 TTAGCCATTCGCCACATGCC 61.383 55.000 0.00 0.00 38.78 4.40
360 361 0.455410 TTTAGCCATTCGCCACATGC 59.545 50.000 0.00 0.00 38.78 4.06
361 362 2.801063 CTTTTAGCCATTCGCCACATG 58.199 47.619 0.00 0.00 38.78 3.21
362 363 1.134946 GCTTTTAGCCATTCGCCACAT 59.865 47.619 0.00 0.00 38.78 3.21
363 364 0.525761 GCTTTTAGCCATTCGCCACA 59.474 50.000 0.00 0.00 38.78 4.17
364 365 0.523335 CGCTTTTAGCCATTCGCCAC 60.523 55.000 0.00 0.00 38.18 5.01
365 366 1.800032 CGCTTTTAGCCATTCGCCA 59.200 52.632 0.00 0.00 38.18 5.69
366 367 1.586303 GCGCTTTTAGCCATTCGCC 60.586 57.895 0.00 0.00 38.18 5.54
367 368 3.982771 GCGCTTTTAGCCATTCGC 58.017 55.556 0.00 0.00 38.18 4.70
374 375 1.135774 GTACCACTTGGCGCTTTTAGC 60.136 52.381 7.64 0.00 39.32 3.09
375 376 2.159627 CAGTACCACTTGGCGCTTTTAG 59.840 50.000 7.64 2.07 39.32 1.85
376 377 2.147958 CAGTACCACTTGGCGCTTTTA 58.852 47.619 7.64 0.00 39.32 1.52
377 378 0.951558 CAGTACCACTTGGCGCTTTT 59.048 50.000 7.64 0.00 39.32 2.27
378 379 0.107831 TCAGTACCACTTGGCGCTTT 59.892 50.000 7.64 0.00 39.32 3.51
379 380 0.324943 ATCAGTACCACTTGGCGCTT 59.675 50.000 7.64 0.00 39.32 4.68
380 381 0.108138 GATCAGTACCACTTGGCGCT 60.108 55.000 7.64 0.00 39.32 5.92
381 382 1.421410 CGATCAGTACCACTTGGCGC 61.421 60.000 0.00 0.00 39.32 6.53
382 383 0.108804 ACGATCAGTACCACTTGGCG 60.109 55.000 0.00 0.00 39.32 5.69
383 384 1.732259 CAACGATCAGTACCACTTGGC 59.268 52.381 0.00 0.00 39.32 4.52
384 385 1.732259 GCAACGATCAGTACCACTTGG 59.268 52.381 0.00 0.00 42.17 3.61
385 386 2.412870 TGCAACGATCAGTACCACTTG 58.587 47.619 0.00 0.00 0.00 3.16
386 387 2.831685 TGCAACGATCAGTACCACTT 57.168 45.000 0.00 0.00 0.00 3.16
387 388 2.612972 CCTTGCAACGATCAGTACCACT 60.613 50.000 0.00 0.00 0.00 4.00
388 389 1.732259 CCTTGCAACGATCAGTACCAC 59.268 52.381 0.00 0.00 0.00 4.16
389 390 1.943968 GCCTTGCAACGATCAGTACCA 60.944 52.381 0.00 0.00 0.00 3.25
390 391 0.727398 GCCTTGCAACGATCAGTACC 59.273 55.000 0.00 0.00 0.00 3.34
391 392 1.661112 GAGCCTTGCAACGATCAGTAC 59.339 52.381 8.54 0.00 0.00 2.73
392 393 1.405526 GGAGCCTTGCAACGATCAGTA 60.406 52.381 14.21 0.00 0.00 2.74
393 394 0.674895 GGAGCCTTGCAACGATCAGT 60.675 55.000 14.21 0.00 0.00 3.41
394 395 1.372087 GGGAGCCTTGCAACGATCAG 61.372 60.000 14.21 0.00 0.00 2.90
395 396 1.377202 GGGAGCCTTGCAACGATCA 60.377 57.895 14.21 0.00 0.00 2.92
396 397 2.464459 CGGGAGCCTTGCAACGATC 61.464 63.158 5.28 5.28 0.00 3.69
397 398 2.436646 CGGGAGCCTTGCAACGAT 60.437 61.111 0.00 0.00 0.00 3.73
398 399 3.171828 TTCGGGAGCCTTGCAACGA 62.172 57.895 0.00 0.00 0.00 3.85
399 400 2.668212 TTCGGGAGCCTTGCAACG 60.668 61.111 0.00 0.00 0.00 4.10
400 401 0.889186 TTCTTCGGGAGCCTTGCAAC 60.889 55.000 0.00 0.00 0.00 4.17
401 402 0.606401 CTTCTTCGGGAGCCTTGCAA 60.606 55.000 0.00 0.00 0.00 4.08
402 403 1.003355 CTTCTTCGGGAGCCTTGCA 60.003 57.895 0.00 0.00 0.00 4.08
403 404 2.402572 GCTTCTTCGGGAGCCTTGC 61.403 63.158 0.00 0.00 0.00 4.01
404 405 2.103042 CGCTTCTTCGGGAGCCTTG 61.103 63.158 0.00 0.00 0.00 3.61
405 406 2.266055 CGCTTCTTCGGGAGCCTT 59.734 61.111 0.00 0.00 0.00 4.35
406 407 4.459089 GCGCTTCTTCGGGAGCCT 62.459 66.667 0.00 0.00 0.00 4.58
407 408 4.459089 AGCGCTTCTTCGGGAGCC 62.459 66.667 2.64 0.00 0.00 4.70
408 409 2.888051 GAGCGCTTCTTCGGGAGC 60.888 66.667 13.26 0.00 0.00 4.70
409 410 2.580867 CGAGCGCTTCTTCGGGAG 60.581 66.667 13.26 0.00 0.00 4.30
410 411 1.588824 TAACGAGCGCTTCTTCGGGA 61.589 55.000 13.26 0.00 0.00 5.14
411 412 0.734942 TTAACGAGCGCTTCTTCGGG 60.735 55.000 13.26 0.00 0.00 5.14
412 413 0.365859 GTTAACGAGCGCTTCTTCGG 59.634 55.000 13.26 0.00 0.00 4.30
413 414 1.337821 AGTTAACGAGCGCTTCTTCG 58.662 50.000 13.26 13.91 0.00 3.79
414 415 3.500014 ACTAGTTAACGAGCGCTTCTTC 58.500 45.455 13.26 0.00 0.00 2.87
415 416 3.572604 ACTAGTTAACGAGCGCTTCTT 57.427 42.857 13.26 8.66 0.00 2.52
416 417 3.243336 CAACTAGTTAACGAGCGCTTCT 58.757 45.455 13.26 1.05 0.00 2.85
417 418 2.222530 GCAACTAGTTAACGAGCGCTTC 60.223 50.000 13.26 3.81 0.00 3.86
418 419 1.725164 GCAACTAGTTAACGAGCGCTT 59.275 47.619 13.26 0.00 0.00 4.68
419 420 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
420 421 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
421 422 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
422 423 2.269172 GGGAGCAACTAGTTAACGAGC 58.731 52.381 14.82 7.28 0.00 5.03
423 424 2.163010 TCGGGAGCAACTAGTTAACGAG 59.837 50.000 13.50 13.50 0.00 4.18
424 425 2.161855 TCGGGAGCAACTAGTTAACGA 58.838 47.619 8.04 10.76 0.00 3.85
425 426 2.642139 TCGGGAGCAACTAGTTAACG 57.358 50.000 8.04 8.70 0.00 3.18
426 427 6.511282 GCATTAATCGGGAGCAACTAGTTAAC 60.511 42.308 8.04 3.72 0.00 2.01
427 428 5.526111 GCATTAATCGGGAGCAACTAGTTAA 59.474 40.000 8.04 0.00 0.00 2.01
428 429 5.054477 GCATTAATCGGGAGCAACTAGTTA 58.946 41.667 8.04 0.00 0.00 2.24
429 430 3.877508 GCATTAATCGGGAGCAACTAGTT 59.122 43.478 1.12 1.12 0.00 2.24
430 431 3.467803 GCATTAATCGGGAGCAACTAGT 58.532 45.455 0.00 0.00 0.00 2.57
431 432 2.808543 GGCATTAATCGGGAGCAACTAG 59.191 50.000 0.00 0.00 0.00 2.57
432 433 2.438021 AGGCATTAATCGGGAGCAACTA 59.562 45.455 0.00 0.00 0.00 2.24
433 434 1.212935 AGGCATTAATCGGGAGCAACT 59.787 47.619 0.00 0.00 0.00 3.16
434 435 1.680338 AGGCATTAATCGGGAGCAAC 58.320 50.000 0.00 0.00 0.00 4.17
435 436 2.297701 GAAGGCATTAATCGGGAGCAA 58.702 47.619 0.00 0.00 0.00 3.91
436 437 1.476833 GGAAGGCATTAATCGGGAGCA 60.477 52.381 0.00 0.00 0.00 4.26
437 438 1.202818 AGGAAGGCATTAATCGGGAGC 60.203 52.381 0.00 0.00 0.00 4.70
438 439 2.938956 AGGAAGGCATTAATCGGGAG 57.061 50.000 0.00 0.00 0.00 4.30
439 440 2.484770 CGAAGGAAGGCATTAATCGGGA 60.485 50.000 5.16 0.00 0.00 5.14
440 441 1.873591 CGAAGGAAGGCATTAATCGGG 59.126 52.381 5.16 0.00 0.00 5.14
441 442 2.802816 CTCGAAGGAAGGCATTAATCGG 59.197 50.000 11.15 1.79 0.00 4.18
442 443 2.802816 CCTCGAAGGAAGGCATTAATCG 59.197 50.000 6.39 6.39 37.67 3.34
443 444 3.142174 CCCTCGAAGGAAGGCATTAATC 58.858 50.000 0.00 0.00 37.67 1.75
444 445 2.158608 CCCCTCGAAGGAAGGCATTAAT 60.159 50.000 0.19 0.00 37.67 1.40
445 446 1.211949 CCCCTCGAAGGAAGGCATTAA 59.788 52.381 0.19 0.00 37.67 1.40
446 447 0.837272 CCCCTCGAAGGAAGGCATTA 59.163 55.000 0.19 0.00 37.67 1.90
447 448 0.914417 TCCCCTCGAAGGAAGGCATT 60.914 55.000 0.19 0.00 37.67 3.56
448 449 0.914417 TTCCCCTCGAAGGAAGGCAT 60.914 55.000 11.60 0.00 38.49 4.40
449 450 1.537889 TTCCCCTCGAAGGAAGGCA 60.538 57.895 11.60 0.00 38.49 4.75
450 451 3.400188 TTCCCCTCGAAGGAAGGC 58.600 61.111 11.60 0.00 38.49 4.35
456 457 2.092321 TCTCTACTCCTTCCCCTCGAAG 60.092 54.545 0.00 0.00 46.61 3.79
457 458 1.921049 TCTCTACTCCTTCCCCTCGAA 59.079 52.381 0.00 0.00 0.00 3.71
458 459 1.592948 TCTCTACTCCTTCCCCTCGA 58.407 55.000 0.00 0.00 0.00 4.04
459 460 2.235016 CATCTCTACTCCTTCCCCTCG 58.765 57.143 0.00 0.00 0.00 4.63
460 461 1.967779 GCATCTCTACTCCTTCCCCTC 59.032 57.143 0.00 0.00 0.00 4.30
461 462 1.578215 AGCATCTCTACTCCTTCCCCT 59.422 52.381 0.00 0.00 0.00 4.79
462 463 1.967779 GAGCATCTCTACTCCTTCCCC 59.032 57.143 0.00 0.00 0.00 4.81
476 477 1.967319 TTTCGGCCCATAAGAGCATC 58.033 50.000 0.00 0.00 0.00 3.91
477 478 2.435372 TTTTCGGCCCATAAGAGCAT 57.565 45.000 0.00 0.00 0.00 3.79
478 479 2.208132 TTTTTCGGCCCATAAGAGCA 57.792 45.000 0.00 0.00 0.00 4.26
494 495 4.158764 TCACATTCCAAGAACACCGTTTTT 59.841 37.500 0.00 0.00 0.00 1.94
495 496 3.697045 TCACATTCCAAGAACACCGTTTT 59.303 39.130 0.00 0.00 0.00 2.43
496 497 3.283751 TCACATTCCAAGAACACCGTTT 58.716 40.909 0.00 0.00 0.00 3.60
497 498 2.878406 CTCACATTCCAAGAACACCGTT 59.122 45.455 0.00 0.00 0.00 4.44
498 499 2.104111 TCTCACATTCCAAGAACACCGT 59.896 45.455 0.00 0.00 0.00 4.83
499 500 2.738846 CTCTCACATTCCAAGAACACCG 59.261 50.000 0.00 0.00 0.00 4.94
500 501 4.008074 TCTCTCACATTCCAAGAACACC 57.992 45.455 0.00 0.00 0.00 4.16
501 502 4.214332 GGTTCTCTCACATTCCAAGAACAC 59.786 45.833 13.63 2.50 44.78 3.32
502 503 4.103153 AGGTTCTCTCACATTCCAAGAACA 59.897 41.667 13.63 0.00 44.78 3.18
503 504 4.646572 AGGTTCTCTCACATTCCAAGAAC 58.353 43.478 5.25 5.25 43.14 3.01
504 505 4.594920 AGAGGTTCTCTCACATTCCAAGAA 59.405 41.667 0.00 0.00 44.81 2.52
505 506 4.163427 AGAGGTTCTCTCACATTCCAAGA 58.837 43.478 0.00 0.00 44.81 3.02
506 507 4.550076 AGAGGTTCTCTCACATTCCAAG 57.450 45.455 0.00 0.00 44.81 3.61
507 508 4.982241 AAGAGGTTCTCTCACATTCCAA 57.018 40.909 0.00 0.00 44.81 3.53
508 509 4.982241 AAAGAGGTTCTCTCACATTCCA 57.018 40.909 0.00 0.00 44.81 3.53
529 530 4.319190 CGCATCAAAGGTCTCACGTAAAAA 60.319 41.667 0.00 0.00 0.00 1.94
530 531 3.185594 CGCATCAAAGGTCTCACGTAAAA 59.814 43.478 0.00 0.00 0.00 1.52
531 532 2.734606 CGCATCAAAGGTCTCACGTAAA 59.265 45.455 0.00 0.00 0.00 2.01
532 533 2.029739 TCGCATCAAAGGTCTCACGTAA 60.030 45.455 0.00 0.00 0.00 3.18
533 534 1.542472 TCGCATCAAAGGTCTCACGTA 59.458 47.619 0.00 0.00 0.00 3.57
534 535 0.317160 TCGCATCAAAGGTCTCACGT 59.683 50.000 0.00 0.00 0.00 4.49
535 536 1.428448 TTCGCATCAAAGGTCTCACG 58.572 50.000 0.00 0.00 0.00 4.35
536 537 5.545658 TTAATTCGCATCAAAGGTCTCAC 57.454 39.130 0.00 0.00 0.00 3.51
537 538 4.094887 GCTTAATTCGCATCAAAGGTCTCA 59.905 41.667 0.00 0.00 0.00 3.27
538 539 4.333926 AGCTTAATTCGCATCAAAGGTCTC 59.666 41.667 2.94 0.00 0.00 3.36
539 540 4.095483 CAGCTTAATTCGCATCAAAGGTCT 59.905 41.667 2.94 0.00 0.00 3.85
581 582 1.153706 GGTACGTGCGCACATAGGT 60.154 57.895 37.03 27.96 0.00 3.08
582 583 1.141019 AGGTACGTGCGCACATAGG 59.859 57.895 37.03 24.03 0.00 2.57
583 584 0.179148 TCAGGTACGTGCGCACATAG 60.179 55.000 37.03 24.38 0.00 2.23
606 613 0.591659 TGACTTGACTCGACTCACGG 59.408 55.000 4.14 0.15 42.82 4.94
615 622 2.795470 GGAACACGACTTGACTTGACTC 59.205 50.000 0.00 0.00 0.00 3.36
625 632 2.739132 GGGACGGGAACACGACTT 59.261 61.111 2.83 0.00 37.61 3.01
667 674 4.500826 GGGGAGGGGAGGGAGTCC 62.501 77.778 0.00 0.00 46.10 3.85
668 675 4.500826 GGGGGAGGGGAGGGAGTC 62.501 77.778 0.00 0.00 0.00 3.36
673 680 4.825679 GGAGTGGGGGAGGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
674 681 3.700350 AGGAGTGGGGGAGGGGAG 61.700 72.222 0.00 0.00 0.00 4.30
675 682 3.695825 GAGGAGTGGGGGAGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
676 683 4.825679 GGAGGAGTGGGGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
677 684 3.700350 AGGAGGAGTGGGGGAGGG 61.700 72.222 0.00 0.00 0.00 4.30
678 685 2.366167 CAGGAGGAGTGGGGGAGG 60.366 72.222 0.00 0.00 0.00 4.30
683 690 1.772819 AAGTGTGCAGGAGGAGTGGG 61.773 60.000 0.00 0.00 0.00 4.61
686 693 3.713902 CAAAGTGTGCAGGAGGAGT 57.286 52.632 0.00 0.00 0.00 3.85
696 703 0.510359 GTCGAGCAGAGCAAAGTGTG 59.490 55.000 0.00 0.00 0.00 3.82
697 704 0.941463 CGTCGAGCAGAGCAAAGTGT 60.941 55.000 0.00 0.00 0.00 3.55
698 705 0.664466 TCGTCGAGCAGAGCAAAGTG 60.664 55.000 0.00 0.00 0.00 3.16
706 713 4.400109 GCACCGTCGTCGAGCAGA 62.400 66.667 2.98 0.00 39.71 4.26
717 724 2.359531 GTGAAGCTATAGAGAGCACCGT 59.640 50.000 3.21 0.00 45.43 4.83
718 725 2.621055 AGTGAAGCTATAGAGAGCACCG 59.379 50.000 3.21 0.00 45.43 4.94
720 727 3.314080 ACGAGTGAAGCTATAGAGAGCAC 59.686 47.826 3.21 5.74 45.43 4.40
722 729 4.561735 AACGAGTGAAGCTATAGAGAGC 57.438 45.455 3.21 0.00 43.19 4.09
723 730 6.125327 TGAAACGAGTGAAGCTATAGAGAG 57.875 41.667 3.21 0.00 0.00 3.20
724 731 5.449314 GCTGAAACGAGTGAAGCTATAGAGA 60.449 44.000 3.21 0.00 0.00 3.10
725 732 4.737765 GCTGAAACGAGTGAAGCTATAGAG 59.262 45.833 3.21 0.00 0.00 2.43
726 733 4.673441 GCTGAAACGAGTGAAGCTATAGA 58.327 43.478 3.21 0.00 0.00 1.98
727 734 3.483922 CGCTGAAACGAGTGAAGCTATAG 59.516 47.826 0.00 0.00 34.06 1.31
730 737 1.000607 ACGCTGAAACGAGTGAAGCTA 60.001 47.619 0.00 0.00 36.70 3.32
731 738 0.249489 ACGCTGAAACGAGTGAAGCT 60.249 50.000 0.00 0.00 36.70 3.74
732 739 0.161870 GACGCTGAAACGAGTGAAGC 59.838 55.000 0.00 0.00 36.70 3.86
779 805 4.383861 GGCTTGGCTTGGCTTGGC 62.384 66.667 0.00 0.00 0.00 4.52
780 806 2.042404 TTTGGCTTGGCTTGGCTTGG 62.042 55.000 5.64 0.00 0.00 3.61
781 807 0.881600 GTTTGGCTTGGCTTGGCTTG 60.882 55.000 5.64 0.00 0.00 4.01
782 808 1.447217 GTTTGGCTTGGCTTGGCTT 59.553 52.632 5.64 0.00 0.00 4.35
783 809 2.510551 GGTTTGGCTTGGCTTGGCT 61.511 57.895 5.64 0.00 0.00 4.75
784 810 2.031012 GGTTTGGCTTGGCTTGGC 59.969 61.111 0.00 0.00 0.00 4.52
819 845 7.308348 CGGCGAATTTACACAGGGAAATAATAT 60.308 37.037 0.00 0.00 0.00 1.28
820 846 6.017770 CGGCGAATTTACACAGGGAAATAATA 60.018 38.462 0.00 0.00 0.00 0.98
821 847 5.220970 CGGCGAATTTACACAGGGAAATAAT 60.221 40.000 0.00 0.00 0.00 1.28
822 848 4.095185 CGGCGAATTTACACAGGGAAATAA 59.905 41.667 0.00 0.00 0.00 1.40
827 853 0.391927 CCGGCGAATTTACACAGGGA 60.392 55.000 9.30 0.00 0.00 4.20
883 909 0.528466 TTTATGCTGAGAGCGAGCGG 60.528 55.000 0.00 0.00 46.26 5.52
885 911 1.596727 CCTTTTATGCTGAGAGCGAGC 59.403 52.381 0.00 0.00 46.26 5.03
886 912 1.596727 GCCTTTTATGCTGAGAGCGAG 59.403 52.381 0.00 0.00 46.26 5.03
887 913 1.656652 GCCTTTTATGCTGAGAGCGA 58.343 50.000 0.00 0.00 46.26 4.93
888 914 0.659957 GGCCTTTTATGCTGAGAGCG 59.340 55.000 0.00 0.00 46.26 5.03
889 915 0.659957 CGGCCTTTTATGCTGAGAGC 59.340 55.000 0.00 0.00 42.82 4.09
890 916 1.303309 CCGGCCTTTTATGCTGAGAG 58.697 55.000 0.00 0.00 37.27 3.20
891 917 0.107214 CCCGGCCTTTTATGCTGAGA 60.107 55.000 0.00 0.00 37.27 3.27
892 918 1.103398 CCCCGGCCTTTTATGCTGAG 61.103 60.000 0.00 0.00 37.27 3.35
893 919 1.077068 CCCCGGCCTTTTATGCTGA 60.077 57.895 0.00 0.00 37.27 4.26
913 943 1.679139 TGCTATGCTACCACAATGGC 58.321 50.000 0.00 0.00 42.67 4.40
914 944 3.282021 AGTTGCTATGCTACCACAATGG 58.718 45.455 0.00 0.00 45.02 3.16
916 946 4.194640 CAGAGTTGCTATGCTACCACAAT 58.805 43.478 1.02 0.00 35.09 2.71
917 947 3.599343 CAGAGTTGCTATGCTACCACAA 58.401 45.455 1.02 0.00 35.09 3.33
918 948 2.677902 GCAGAGTTGCTATGCTACCACA 60.678 50.000 8.30 0.00 44.16 4.17
919 949 1.936547 GCAGAGTTGCTATGCTACCAC 59.063 52.381 8.30 0.00 44.16 4.16
920 950 2.315925 GCAGAGTTGCTATGCTACCA 57.684 50.000 8.30 0.00 44.16 3.25
970 1003 2.026356 ACGGTGATGGAATTGGATGTGA 60.026 45.455 0.00 0.00 0.00 3.58
994 1027 3.345035 CGAGAGGATCATCGGCGA 58.655 61.111 13.87 13.87 37.82 5.54
1067 1100 0.239879 TTCGATTTGGCTTTGGCGTC 59.760 50.000 0.00 0.00 39.81 5.19
1079 1112 2.009774 CAGATGACGGGCTTTCGATTT 58.990 47.619 0.00 0.00 0.00 2.17
1080 1113 1.207089 TCAGATGACGGGCTTTCGATT 59.793 47.619 0.00 0.00 0.00 3.34
1081 1114 0.824109 TCAGATGACGGGCTTTCGAT 59.176 50.000 0.00 0.00 0.00 3.59
1082 1115 0.606096 TTCAGATGACGGGCTTTCGA 59.394 50.000 0.00 0.00 0.00 3.71
1083 1116 1.002366 CTTCAGATGACGGGCTTTCG 58.998 55.000 0.00 0.00 0.00 3.46
1084 1117 2.386661 TCTTCAGATGACGGGCTTTC 57.613 50.000 0.00 0.00 0.00 2.62
1092 1125 5.119931 ACGCTAGATGATCTTCAGATGAC 57.880 43.478 0.00 0.00 34.37 3.06
1102 1135 3.072944 AGGTACCGTACGCTAGATGATC 58.927 50.000 10.49 0.00 0.00 2.92
1109 1154 1.094785 GTCCAAGGTACCGTACGCTA 58.905 55.000 10.49 0.00 0.00 4.26
1113 1158 0.533951 CCTGGTCCAAGGTACCGTAC 59.466 60.000 6.18 0.00 40.08 3.67
1145 1190 1.611592 GCAAGACACGGTTACGGACG 61.612 60.000 0.00 0.00 46.48 4.79
1148 1193 0.319211 TGAGCAAGACACGGTTACGG 60.319 55.000 0.00 0.00 46.48 4.02
1150 1195 2.059541 GACTGAGCAAGACACGGTTAC 58.940 52.381 0.00 0.00 0.00 2.50
1151 1196 1.335597 CGACTGAGCAAGACACGGTTA 60.336 52.381 0.00 0.00 0.00 2.85
1152 1197 0.597637 CGACTGAGCAAGACACGGTT 60.598 55.000 0.00 0.00 0.00 4.44
1153 1198 1.007271 CGACTGAGCAAGACACGGT 60.007 57.895 0.00 0.00 0.00 4.83
1154 1199 2.375766 GCGACTGAGCAAGACACGG 61.376 63.158 0.00 0.00 37.05 4.94
1155 1200 1.661509 TGCGACTGAGCAAGACACG 60.662 57.895 0.00 0.00 45.06 4.49
1164 1209 3.560068 AGTAAAACCAAGTTGCGACTGAG 59.440 43.478 7.56 4.69 35.91 3.35
1174 1219 5.681639 ACTTGTAGCAGAGTAAAACCAAGT 58.318 37.500 0.00 0.00 37.15 3.16
1234 1358 2.126502 GCGGCACCGACCAAAATG 60.127 61.111 14.43 0.00 42.83 2.32
1235 1359 3.732892 CGCGGCACCGACCAAAAT 61.733 61.111 14.43 0.00 42.83 1.82
1261 1387 1.412710 ACCTGCCAACATACGATCGAT 59.587 47.619 24.34 8.18 0.00 3.59
1262 1388 0.821517 ACCTGCCAACATACGATCGA 59.178 50.000 24.34 5.87 0.00 3.59
1263 1389 0.930310 CACCTGCCAACATACGATCG 59.070 55.000 14.88 14.88 0.00 3.69
1264 1390 2.309528 TCACCTGCCAACATACGATC 57.690 50.000 0.00 0.00 0.00 3.69
1265 1391 2.632377 CTTCACCTGCCAACATACGAT 58.368 47.619 0.00 0.00 0.00 3.73
1272 1411 3.365265 CCGCCTTCACCTGCCAAC 61.365 66.667 0.00 0.00 0.00 3.77
1290 1429 4.115199 GCCCCACCCGCTGAAGAT 62.115 66.667 0.00 0.00 0.00 2.40
1347 1486 0.321653 ACCTGTCCATTCGTTGCTCC 60.322 55.000 0.00 0.00 0.00 4.70
1355 1494 1.830477 AGAGAGAGCACCTGTCCATTC 59.170 52.381 0.00 0.00 35.91 2.67
1357 1496 1.006998 AGAGAGAGAGCACCTGTCCAT 59.993 52.381 0.00 0.00 35.91 3.41
1385 1524 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1388 1540 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1392 1544 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1393 1545 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1394 1546 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1395 1547 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1396 1548 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1397 1549 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1400 1552 5.362143 TGAAGAGAGAGAGAGAGAGAGAGAG 59.638 48.000 0.00 0.00 0.00 3.20
1402 1554 5.128499 ACTGAAGAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
1403 1555 5.026121 ACTGAAGAGAGAGAGAGAGAGAGA 58.974 45.833 0.00 0.00 0.00 3.10
1405 1557 5.762179 AACTGAAGAGAGAGAGAGAGAGA 57.238 43.478 0.00 0.00 0.00 3.10
1406 1558 9.784531 ATAATAACTGAAGAGAGAGAGAGAGAG 57.215 37.037 0.00 0.00 0.00 3.20
1411 1563 9.922477 TGGTAATAATAACTGAAGAGAGAGAGA 57.078 33.333 0.00 0.00 0.00 3.10
1470 1631 1.425428 CGCTTCCCTGTTCATTCGC 59.575 57.895 0.00 0.00 0.00 4.70
1527 1696 2.751436 CCTCGTACGGGTTCGGGA 60.751 66.667 15.21 0.00 41.39 5.14
1567 1736 3.807538 TCGTAGGCCGACAGCGTC 61.808 66.667 16.75 0.00 45.17 5.19
1596 1765 2.543067 GAAGCCGAAGCAGGGGATGT 62.543 60.000 0.00 0.00 43.56 3.06
1667 1836 3.189287 CCACCAATAAGGCGATCATAAGC 59.811 47.826 0.00 0.00 43.14 3.09
1668 1837 4.214119 CACCACCAATAAGGCGATCATAAG 59.786 45.833 0.00 0.00 43.14 1.73
1669 1838 4.133820 CACCACCAATAAGGCGATCATAA 58.866 43.478 0.00 0.00 43.14 1.90
1670 1839 3.389656 TCACCACCAATAAGGCGATCATA 59.610 43.478 0.00 0.00 43.14 2.15
1671 1840 2.172505 TCACCACCAATAAGGCGATCAT 59.827 45.455 0.00 0.00 43.14 2.45
1674 1843 2.439507 AGATCACCACCAATAAGGCGAT 59.560 45.455 0.00 0.00 43.14 4.58
1675 1844 1.837439 AGATCACCACCAATAAGGCGA 59.163 47.619 0.00 0.00 43.14 5.54
1676 1845 2.213499 GAGATCACCACCAATAAGGCG 58.787 52.381 0.00 0.00 43.14 5.52
1677 1846 3.281727 TGAGATCACCACCAATAAGGC 57.718 47.619 0.00 0.00 43.14 4.35
1678 1847 5.439721 TGAATGAGATCACCACCAATAAGG 58.560 41.667 0.00 0.00 45.67 2.69
1679 1848 6.996879 AGATGAATGAGATCACCACCAATAAG 59.003 38.462 0.00 0.00 30.82 1.73
1680 1849 6.769341 CAGATGAATGAGATCACCACCAATAA 59.231 38.462 0.00 0.00 30.82 1.40
1681 1850 6.293698 CAGATGAATGAGATCACCACCAATA 58.706 40.000 0.00 0.00 30.82 1.90
1682 1851 5.131067 CAGATGAATGAGATCACCACCAAT 58.869 41.667 0.00 0.00 30.82 3.16
1683 1852 4.520179 CAGATGAATGAGATCACCACCAA 58.480 43.478 0.00 0.00 30.82 3.67
1684 1853 3.683564 GCAGATGAATGAGATCACCACCA 60.684 47.826 0.00 0.00 30.82 4.17
1685 1854 2.877168 GCAGATGAATGAGATCACCACC 59.123 50.000 0.00 0.00 30.82 4.61
1686 1855 2.877168 GGCAGATGAATGAGATCACCAC 59.123 50.000 0.00 0.00 30.82 4.16
1687 1856 2.775960 AGGCAGATGAATGAGATCACCA 59.224 45.455 0.00 0.00 30.82 4.17
1688 1857 3.139850 CAGGCAGATGAATGAGATCACC 58.860 50.000 0.00 0.00 30.82 4.02
1689 1858 2.548904 GCAGGCAGATGAATGAGATCAC 59.451 50.000 0.00 0.00 30.82 3.06
1722 1891 4.293648 CCTGGTCGTGCGTGGACA 62.294 66.667 4.35 0.00 36.12 4.02
1814 1983 4.681978 GAGCTGAACGGTGGCGGT 62.682 66.667 0.00 0.00 0.00 5.68
1857 2026 4.041444 AGACCAGTCTTTCTCTTGCAGAAT 59.959 41.667 0.00 0.00 41.02 2.40
1956 2125 2.947938 CTACCCCCATTGCAGCCTCG 62.948 65.000 0.00 0.00 0.00 4.63
1972 2141 2.183555 CCCGGAGCGTTGGACTAC 59.816 66.667 0.73 0.00 0.00 2.73
2022 2191 2.350895 CGGTTGATCACCTGCCCA 59.649 61.111 0.00 0.00 44.69 5.36
2043 2212 6.842163 TCTCAAAAGAGAAGACACACAAAAC 58.158 36.000 0.00 0.00 0.00 2.43
2054 2223 9.962783 AATGTCTGAATTTTCTCAAAAGAGAAG 57.037 29.630 7.84 0.00 41.56 2.85
2056 2225 8.906867 ACAATGTCTGAATTTTCTCAAAAGAGA 58.093 29.630 0.00 0.00 33.22 3.10
2078 2256 5.051816 CAGCCACACAAAAATTCAGACAAT 58.948 37.500 0.00 0.00 0.00 2.71
2079 2257 4.081752 ACAGCCACACAAAAATTCAGACAA 60.082 37.500 0.00 0.00 0.00 3.18
2096 2291 0.176910 TCACGTCAGAAACACAGCCA 59.823 50.000 0.00 0.00 0.00 4.75
2099 2294 3.555547 TGTTGATCACGTCAGAAACACAG 59.444 43.478 0.00 0.00 38.29 3.66
2163 2358 4.675408 CGTTCTCTGATCTTGATTCGTCCA 60.675 45.833 0.00 0.00 0.00 4.02
2186 2381 2.452600 AGAGTCCTCTCCTCCATGTC 57.547 55.000 0.00 0.00 41.26 3.06
2224 2419 7.799081 TCAGCTGTATCAACTACTAGTACCTA 58.201 38.462 14.67 0.00 0.00 3.08
2424 2625 4.819105 TCTACCACATACCTGGAAGTTG 57.181 45.455 0.00 0.00 35.04 3.16
2452 2653 4.761739 CCCTCTTGCAGAAACAAAGTGATA 59.238 41.667 0.00 0.00 0.00 2.15
2453 2654 3.571401 CCCTCTTGCAGAAACAAAGTGAT 59.429 43.478 0.00 0.00 0.00 3.06
2490 2691 4.402793 GGACTGAGTTAGCTTAGGACATGA 59.597 45.833 0.00 0.00 33.16 3.07
2501 2702 2.094442 GTGAGGTGAGGACTGAGTTAGC 60.094 54.545 0.00 0.00 0.00 3.09
2514 2715 1.059098 AGGCAACATGAGTGAGGTGA 58.941 50.000 0.00 0.00 41.41 4.02
2552 2753 4.096984 GTGGACATGATCTTGGTGAAATCC 59.903 45.833 12.76 9.38 0.00 3.01
2615 2816 1.680522 GGATCTTCTCCAGCGCCTCA 61.681 60.000 2.29 0.00 44.26 3.86
2666 2867 6.833933 TCTGACTTGCTGATTAGTACCTGATA 59.166 38.462 0.00 0.00 0.00 2.15
2678 2879 5.068636 ACAACATTTCTCTGACTTGCTGAT 58.931 37.500 0.00 0.00 0.00 2.90
2679 2880 4.454678 ACAACATTTCTCTGACTTGCTGA 58.545 39.130 0.00 0.00 0.00 4.26
2686 2887 4.991056 TCAGTGCTACAACATTTCTCTGAC 59.009 41.667 0.00 0.00 0.00 3.51
2698 2901 7.309133 CCAATAAATCAACCTTCAGTGCTACAA 60.309 37.037 0.00 0.00 0.00 2.41
2753 2957 7.886970 CCAGATCACTGAAAATGGACCATATAT 59.113 37.037 7.59 0.00 46.03 0.86
2801 3005 1.414866 GGATGGAGGAGGAAGAGGCC 61.415 65.000 0.00 0.00 0.00 5.19
2839 3043 1.029408 TGACTGTGCAGCAAAACCGT 61.029 50.000 0.00 0.00 0.00 4.83
2846 3050 0.109153 ATGAACCTGACTGTGCAGCA 59.891 50.000 0.00 0.00 34.56 4.41
2879 3083 2.816411 TGGTAACTTCATCCTCCGACT 58.184 47.619 0.00 0.00 37.61 4.18
2882 3086 6.113411 ACTAAAATGGTAACTTCATCCTCCG 58.887 40.000 0.00 0.00 37.61 4.63
2987 3197 9.649167 GATGTAGTTTTACCTAGAAGCTGTTTA 57.351 33.333 0.00 0.00 0.00 2.01
2988 3198 8.376270 AGATGTAGTTTTACCTAGAAGCTGTTT 58.624 33.333 0.00 0.00 0.00 2.83
3026 3236 3.996150 AACATGTGAAGACTTGCCAAG 57.004 42.857 2.11 2.11 31.78 3.61
3103 3315 5.357032 GGGTTTCTTTATATGACCACCACAG 59.643 44.000 0.00 0.00 32.00 3.66
3125 3337 5.110814 TCAACATATCACTTTACCCTGGG 57.889 43.478 12.28 12.28 0.00 4.45
3151 3363 6.648879 TCATTCTTTTGGGAAAATCGTCTT 57.351 33.333 0.00 0.00 0.00 3.01
3199 3411 6.453396 GCGTGTAATTGTAGAGAAAGTTACCG 60.453 42.308 0.00 0.00 0.00 4.02
3318 3530 7.823745 AGAAAAGGCAAAGAGAACATTAGAA 57.176 32.000 0.00 0.00 0.00 2.10
3336 3548 7.647715 TGCTCCTTTGTTTCGATAAAAGAAAAG 59.352 33.333 13.58 6.54 38.99 2.27
3346 3558 2.031157 CCGTTTGCTCCTTTGTTTCGAT 60.031 45.455 0.00 0.00 0.00 3.59
3363 3575 2.030958 GATCGAAACACGGGCCGTT 61.031 57.895 32.12 16.54 38.32 4.44
3418 3630 3.476552 CTCTAACGAGATGGAGCTCTCT 58.523 50.000 14.64 9.59 39.65 3.10
3550 3762 0.399233 ATAGGCAGGTGGAGGAGTCC 60.399 60.000 0.00 0.00 44.24 3.85
3560 3772 1.488393 GGAAGAGCTCAATAGGCAGGT 59.512 52.381 17.77 0.00 0.00 4.00
3568 3780 1.908340 AGCGGCTGGAAGAGCTCAAT 61.908 55.000 17.77 3.78 44.10 2.57
3770 3982 7.114754 TCCATGAGAAGCTGAACTGAATTATT 58.885 34.615 0.00 0.00 0.00 1.40
3798 4015 3.565482 TGGTTGCAATGAACAGTCTTCTC 59.435 43.478 0.59 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.