Multiple sequence alignment - TraesCS5A01G368200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G368200 chr5A 100.000 2664 0 0 1 2664 568889474 568892137 0.000000e+00 4920.0
1 TraesCS5A01G368200 chr5A 97.130 871 19 1 1 871 568799149 568800013 0.000000e+00 1465.0
2 TraesCS5A01G368200 chr5A 92.650 585 35 2 869 1445 568681810 568682394 0.000000e+00 835.0
3 TraesCS5A01G368200 chr5A 87.200 500 37 16 958 1450 568799898 568800377 6.490000e-151 544.0
4 TraesCS5A01G368200 chr5A 89.637 386 12 6 1511 1886 568808628 568808995 1.440000e-127 466.0
5 TraesCS5A01G368200 chr5A 90.492 305 29 0 2078 2382 64980814 64980510 1.150000e-108 403.0
6 TraesCS5A01G368200 chr5A 94.872 156 8 0 1888 2043 568812258 568812413 7.370000e-61 244.0
7 TraesCS5A01G368200 chr5A 81.643 207 20 13 2475 2664 568812740 568812945 3.550000e-34 156.0
8 TraesCS5A01G368200 chr5A 88.793 116 7 1 958 1067 568890229 568890344 1.290000e-28 137.0
9 TraesCS5A01G368200 chr5A 88.793 116 7 1 756 871 568890431 568890540 1.290000e-28 137.0
10 TraesCS5A01G368200 chr5A 86.207 116 10 4 756 871 568681899 568682008 1.300000e-23 121.0
11 TraesCS5A01G368200 chr5A 73.391 233 45 13 1805 2026 702899279 702899053 1.320000e-08 71.3
12 TraesCS5A01G368200 chr5B 89.318 983 69 14 892 1840 549587390 549588370 0.000000e+00 1201.0
13 TraesCS5A01G368200 chr5B 85.149 303 19 4 2383 2662 549588837 549589136 1.210000e-73 287.0
14 TraesCS5A01G368200 chr5D 88.434 977 79 13 958 1901 449667172 449668147 0.000000e+00 1147.0
15 TraesCS5A01G368200 chr5D 90.027 742 49 16 993 1719 449649736 449650467 0.000000e+00 937.0
16 TraesCS5A01G368200 chr5D 93.686 586 33 3 869 1450 449692318 449692903 0.000000e+00 874.0
17 TraesCS5A01G368200 chr5D 83.364 541 57 13 1449 1971 449692966 449693491 1.120000e-128 470.0
18 TraesCS5A01G368200 chr5D 90.492 305 27 2 2078 2382 521864290 521863988 4.130000e-108 401.0
19 TraesCS5A01G368200 chr5D 84.818 303 20 4 2383 2662 449668665 449668964 5.610000e-72 281.0
20 TraesCS5A01G368200 chr5D 88.793 116 7 5 756 871 449692407 449692516 1.290000e-28 137.0
21 TraesCS5A01G368200 chr5D 88.034 117 8 4 755 871 449667171 449667281 1.660000e-27 134.0
22 TraesCS5A01G368200 chr3B 90.492 305 29 0 2079 2383 449806546 449806850 1.150000e-108 403.0
23 TraesCS5A01G368200 chr3B 89.068 311 34 0 2078 2388 680975525 680975215 1.160000e-103 387.0
24 TraesCS5A01G368200 chr1B 90.429 303 29 0 2080 2382 683991873 683992175 1.490000e-107 399.0
25 TraesCS5A01G368200 chr4B 90.132 304 29 1 2078 2381 45199867 45199565 6.910000e-106 394.0
26 TraesCS5A01G368200 chr7D 88.820 322 31 4 2062 2381 70109229 70109547 8.940000e-105 390.0
27 TraesCS5A01G368200 chr2D 89.836 305 30 1 2077 2381 618294474 618294777 8.940000e-105 390.0
28 TraesCS5A01G368200 chr7B 87.768 327 37 3 2071 2396 731129536 731129212 1.940000e-101 379.0
29 TraesCS5A01G368200 chr6D 72.727 495 100 22 104 578 468144494 468144973 1.660000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G368200 chr5A 568889474 568892137 2663 False 1731.333333 4920 92.528667 1 2664 3 chr5A.!!$F4 2663
1 TraesCS5A01G368200 chr5A 568799149 568800377 1228 False 1004.500000 1465 92.165000 1 1450 2 chr5A.!!$F2 1449
2 TraesCS5A01G368200 chr5A 568681810 568682394 584 False 478.000000 835 89.428500 756 1445 2 chr5A.!!$F1 689
3 TraesCS5A01G368200 chr5A 568808628 568812945 4317 False 288.666667 466 88.717333 1511 2664 3 chr5A.!!$F3 1153
4 TraesCS5A01G368200 chr5B 549587390 549589136 1746 False 744.000000 1201 87.233500 892 2662 2 chr5B.!!$F1 1770
5 TraesCS5A01G368200 chr5D 449649736 449650467 731 False 937.000000 937 90.027000 993 1719 1 chr5D.!!$F1 726
6 TraesCS5A01G368200 chr5D 449667171 449668964 1793 False 520.666667 1147 87.095333 755 2662 3 chr5D.!!$F2 1907
7 TraesCS5A01G368200 chr5D 449692318 449693491 1173 False 493.666667 874 88.614333 756 1971 3 chr5D.!!$F3 1215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 848 0.034896 AAGGTTGTCGACGAAGCCAT 59.965 50.0 19.3 5.61 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 6189 0.025513 CAATACAGACGCAAGCGCTC 59.974 55.0 12.06 11.06 44.19 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.983804 GGCGGTAATATTTTGAAGCTATATAAC 57.016 33.333 0.00 0.00 0.00 1.89
120 121 3.716006 CGGTTGCGCTCTGTGTGG 61.716 66.667 9.73 0.00 0.00 4.17
121 122 3.357079 GGTTGCGCTCTGTGTGGG 61.357 66.667 9.73 0.00 0.00 4.61
122 123 3.357079 GTTGCGCTCTGTGTGGGG 61.357 66.667 9.73 0.00 0.00 4.96
123 124 4.641645 TTGCGCTCTGTGTGGGGG 62.642 66.667 9.73 0.00 0.00 5.40
138 139 2.763215 GGGTGCATTGGTGAGGGA 59.237 61.111 0.00 0.00 0.00 4.20
160 161 2.877097 TGCCTTTCATGCTCCAGTTA 57.123 45.000 0.00 0.00 0.00 2.24
323 324 0.472471 TGGCCACCGAAGAGTCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
365 366 0.807496 GATGGTTGACTTCAGCAGCC 59.193 55.000 0.00 0.00 37.18 4.85
487 488 6.618287 ACAAAATTTGAGTGACTTCGATGA 57.382 33.333 13.19 0.00 0.00 2.92
539 540 1.528129 GAGGTGAAAGCCTTGGTCTG 58.472 55.000 0.00 0.00 39.34 3.51
555 556 7.212274 CCTTGGTCTGATCTGAATTTGTTTTT 58.788 34.615 3.59 0.00 0.00 1.94
558 559 8.010733 TGGTCTGATCTGAATTTGTTTTTCTT 57.989 30.769 3.59 0.00 0.00 2.52
631 632 2.665008 AAGACAGCGCTTGAGCACCA 62.665 55.000 7.50 0.00 42.21 4.17
635 636 2.980233 GCGCTTGAGCACCACCTT 60.980 61.111 0.00 0.00 42.21 3.50
636 637 2.949106 CGCTTGAGCACCACCTTG 59.051 61.111 3.65 0.00 42.21 3.61
703 704 3.221771 TGATTGGGGATAATCGCTTTGG 58.778 45.455 0.00 0.00 39.39 3.28
759 760 9.569122 AGCTTTGGTTTTTATATCCACGTATAT 57.431 29.630 0.00 0.00 0.00 0.86
764 765 9.945904 TGGTTTTTATATCCACGTATATATGCA 57.054 29.630 10.56 0.00 0.00 3.96
782 783 5.584253 ATGCATGGTATACGAGGATAGAC 57.416 43.478 0.00 0.00 0.00 2.59
783 784 3.762288 TGCATGGTATACGAGGATAGACC 59.238 47.826 3.57 0.00 37.02 3.85
784 785 3.181499 GCATGGTATACGAGGATAGACCG 60.181 52.174 3.57 0.00 38.97 4.79
785 786 4.259356 CATGGTATACGAGGATAGACCGA 58.741 47.826 0.00 0.00 38.97 4.69
786 787 3.935315 TGGTATACGAGGATAGACCGAG 58.065 50.000 0.00 0.00 38.97 4.63
787 788 3.580022 TGGTATACGAGGATAGACCGAGA 59.420 47.826 0.00 0.00 38.97 4.04
788 789 4.183101 GGTATACGAGGATAGACCGAGAG 58.817 52.174 0.00 0.00 44.74 3.20
789 790 4.081752 GGTATACGAGGATAGACCGAGAGA 60.082 50.000 0.00 0.00 44.74 3.10
790 791 2.536761 ACGAGGATAGACCGAGAGAG 57.463 55.000 0.00 0.00 44.74 3.20
791 792 1.153353 CGAGGATAGACCGAGAGAGC 58.847 60.000 0.00 0.00 44.74 4.09
792 793 1.530323 GAGGATAGACCGAGAGAGCC 58.470 60.000 0.00 0.00 44.74 4.70
793 794 1.073284 GAGGATAGACCGAGAGAGCCT 59.927 57.143 0.00 0.00 44.74 4.58
794 795 1.202879 AGGATAGACCGAGAGAGCCTG 60.203 57.143 0.00 0.00 44.74 4.85
795 796 0.596082 GATAGACCGAGAGAGCCTGC 59.404 60.000 0.00 0.00 0.00 4.85
796 797 0.106469 ATAGACCGAGAGAGCCTGCA 60.106 55.000 0.00 0.00 0.00 4.41
797 798 0.749818 TAGACCGAGAGAGCCTGCAG 60.750 60.000 6.78 6.78 0.00 4.41
798 799 2.036414 ACCGAGAGAGCCTGCAGA 59.964 61.111 17.39 0.00 0.00 4.26
799 800 1.381056 ACCGAGAGAGCCTGCAGAT 60.381 57.895 17.39 2.58 0.00 2.90
800 801 1.067749 CCGAGAGAGCCTGCAGATG 59.932 63.158 17.39 0.00 0.00 2.90
801 802 1.067749 CGAGAGAGCCTGCAGATGG 59.932 63.158 17.39 0.00 0.00 3.51
820 821 3.191539 GAAGCTCGAAGGCGGCAG 61.192 66.667 13.08 0.00 36.56 4.85
821 822 4.767255 AAGCTCGAAGGCGGCAGG 62.767 66.667 13.08 0.00 36.56 4.85
823 824 4.760047 GCTCGAAGGCGGCAGGAA 62.760 66.667 13.08 0.00 38.28 3.36
824 825 2.510238 CTCGAAGGCGGCAGGAAG 60.510 66.667 13.08 0.00 38.28 3.46
825 826 2.994995 TCGAAGGCGGCAGGAAGA 60.995 61.111 13.08 0.00 38.28 2.87
826 827 2.510238 CGAAGGCGGCAGGAAGAG 60.510 66.667 13.08 0.00 0.00 2.85
827 828 2.821810 GAAGGCGGCAGGAAGAGC 60.822 66.667 13.08 0.00 0.00 4.09
828 829 3.612247 GAAGGCGGCAGGAAGAGCA 62.612 63.158 13.08 0.00 0.00 4.26
829 830 3.196207 AAGGCGGCAGGAAGAGCAA 62.196 57.895 13.08 0.00 0.00 3.91
830 831 3.130160 GGCGGCAGGAAGAGCAAG 61.130 66.667 3.07 0.00 0.00 4.01
831 832 3.130160 GCGGCAGGAAGAGCAAGG 61.130 66.667 0.00 0.00 0.00 3.61
832 833 2.348998 CGGCAGGAAGAGCAAGGT 59.651 61.111 0.00 0.00 0.00 3.50
833 834 1.302832 CGGCAGGAAGAGCAAGGTT 60.303 57.895 0.00 0.00 0.00 3.50
834 835 1.580845 CGGCAGGAAGAGCAAGGTTG 61.581 60.000 0.00 0.00 0.00 3.77
835 836 0.538287 GGCAGGAAGAGCAAGGTTGT 60.538 55.000 0.00 0.00 0.00 3.32
836 837 0.877743 GCAGGAAGAGCAAGGTTGTC 59.122 55.000 0.00 0.00 0.00 3.18
837 838 1.151668 CAGGAAGAGCAAGGTTGTCG 58.848 55.000 0.00 0.00 0.00 4.35
838 839 1.048601 AGGAAGAGCAAGGTTGTCGA 58.951 50.000 0.00 0.00 0.00 4.20
839 840 1.149148 GGAAGAGCAAGGTTGTCGAC 58.851 55.000 9.11 9.11 0.00 4.20
840 841 0.784778 GAAGAGCAAGGTTGTCGACG 59.215 55.000 11.62 0.00 0.00 5.12
841 842 0.387929 AAGAGCAAGGTTGTCGACGA 59.612 50.000 11.62 6.16 0.00 4.20
842 843 0.387929 AGAGCAAGGTTGTCGACGAA 59.612 50.000 7.17 1.55 0.00 3.85
843 844 0.784778 GAGCAAGGTTGTCGACGAAG 59.215 55.000 7.17 0.00 0.00 3.79
844 845 1.204312 GCAAGGTTGTCGACGAAGC 59.796 57.895 7.17 13.41 0.00 3.86
845 846 1.860078 CAAGGTTGTCGACGAAGCC 59.140 57.895 19.30 13.13 0.00 4.35
846 847 0.878523 CAAGGTTGTCGACGAAGCCA 60.879 55.000 19.30 0.00 0.00 4.75
847 848 0.034896 AAGGTTGTCGACGAAGCCAT 59.965 50.000 19.30 5.61 0.00 4.40
848 849 0.670546 AGGTTGTCGACGAAGCCATG 60.671 55.000 19.30 0.00 0.00 3.66
849 850 1.635663 GGTTGTCGACGAAGCCATGG 61.636 60.000 7.63 7.63 0.00 3.66
850 851 0.669318 GTTGTCGACGAAGCCATGGA 60.669 55.000 18.40 0.00 0.00 3.41
851 852 0.389817 TTGTCGACGAAGCCATGGAG 60.390 55.000 18.40 5.64 0.00 3.86
852 853 1.248101 TGTCGACGAAGCCATGGAGA 61.248 55.000 18.40 0.00 0.00 3.71
853 854 0.526524 GTCGACGAAGCCATGGAGAG 60.527 60.000 18.40 5.63 0.00 3.20
854 855 1.227089 CGACGAAGCCATGGAGAGG 60.227 63.158 18.40 3.67 0.00 3.69
855 856 1.901085 GACGAAGCCATGGAGAGGT 59.099 57.895 18.40 7.33 0.00 3.85
856 857 0.460987 GACGAAGCCATGGAGAGGTG 60.461 60.000 18.40 1.51 0.00 4.00
857 858 1.153289 CGAAGCCATGGAGAGGTGG 60.153 63.158 18.40 0.00 38.55 4.61
861 862 3.080641 CCATGGAGAGGTGGCACA 58.919 61.111 20.82 0.00 0.00 4.57
862 863 1.379916 CCATGGAGAGGTGGCACAA 59.620 57.895 20.82 0.00 44.16 3.33
870 871 2.203294 GGTGGCACAACCGTTCCT 60.203 61.111 20.82 0.00 42.55 3.36
871 872 2.551912 GGTGGCACAACCGTTCCTG 61.552 63.158 20.82 0.00 42.55 3.86
872 873 1.525077 GTGGCACAACCGTTCCTGA 60.525 57.895 13.86 0.00 44.16 3.86
873 874 1.525077 TGGCACAACCGTTCCTGAC 60.525 57.895 0.00 0.00 43.94 3.51
938 939 3.244976 GTGAAAATTGCCAATGGAGACG 58.755 45.455 2.05 0.00 0.00 4.18
1225 1240 3.748027 CGGGAGTAGTGTATGTAGGAGCT 60.748 52.174 0.00 0.00 0.00 4.09
1246 1261 6.373779 AGCTTTGAACTGAAAATCGTGTATG 58.626 36.000 0.00 0.00 0.00 2.39
1264 1288 3.434319 CCTGTGTGCGCATGTCCC 61.434 66.667 15.91 0.00 0.00 4.46
1343 1367 2.772191 TGGTGGGGTCTGCTGTGT 60.772 61.111 0.00 0.00 0.00 3.72
1425 1449 3.039588 CGCCCGTGCAAACGTACT 61.040 61.111 0.00 0.00 37.32 2.73
1461 1549 5.124457 TGTCTTCCCGCGTACTATATAATCC 59.876 44.000 4.92 0.00 0.00 3.01
1463 1551 5.948162 TCTTCCCGCGTACTATATAATCCTT 59.052 40.000 4.92 0.00 0.00 3.36
1702 1834 2.809601 GGCCACAGTGTAGACGCG 60.810 66.667 3.53 3.53 0.00 6.01
1740 1874 4.445453 TGCTAGCCAACTATGTTGATGAG 58.555 43.478 13.29 6.56 0.00 2.90
1886 2075 8.637281 TGTATCATCATGTTTCGTTACGTATT 57.363 30.769 4.24 0.00 0.00 1.89
2043 5521 8.462016 AGAGTGAAAAATATGTAGCACAAATCC 58.538 33.333 0.00 0.00 0.00 3.01
2044 5522 8.353423 AGTGAAAAATATGTAGCACAAATCCT 57.647 30.769 0.00 0.00 0.00 3.24
2051 5892 4.623932 TGTAGCACAAATCCTCTCAAGT 57.376 40.909 0.00 0.00 0.00 3.16
2068 5909 0.322816 AGTGCGCATGACCAATCCTT 60.323 50.000 15.91 0.00 0.00 3.36
2078 5919 2.019984 GACCAATCCTTGACCATCAGC 58.980 52.381 0.00 0.00 0.00 4.26
2079 5920 1.019673 CCAATCCTTGACCATCAGCG 58.980 55.000 0.00 0.00 0.00 5.18
2080 5921 1.407299 CCAATCCTTGACCATCAGCGA 60.407 52.381 0.00 0.00 0.00 4.93
2081 5922 2.358957 CAATCCTTGACCATCAGCGAA 58.641 47.619 0.00 0.00 0.00 4.70
2082 5923 2.029838 ATCCTTGACCATCAGCGAAC 57.970 50.000 0.00 0.00 0.00 3.95
2083 5924 0.036388 TCCTTGACCATCAGCGAACC 60.036 55.000 0.00 0.00 0.00 3.62
2084 5925 0.321564 CCTTGACCATCAGCGAACCA 60.322 55.000 0.00 0.00 0.00 3.67
2085 5926 1.522668 CTTGACCATCAGCGAACCAA 58.477 50.000 0.00 0.00 0.00 3.67
2086 5927 2.086869 CTTGACCATCAGCGAACCAAT 58.913 47.619 0.00 0.00 0.00 3.16
2087 5928 3.270027 CTTGACCATCAGCGAACCAATA 58.730 45.455 0.00 0.00 0.00 1.90
2088 5929 3.558931 TGACCATCAGCGAACCAATAT 57.441 42.857 0.00 0.00 0.00 1.28
2089 5930 4.681074 TGACCATCAGCGAACCAATATA 57.319 40.909 0.00 0.00 0.00 0.86
2090 5931 5.227569 TGACCATCAGCGAACCAATATAT 57.772 39.130 0.00 0.00 0.00 0.86
2091 5932 4.996758 TGACCATCAGCGAACCAATATATG 59.003 41.667 0.00 0.00 0.00 1.78
2108 5949 9.224267 CCAATATATGGTTGAATGGTTAGAGAG 57.776 37.037 4.71 0.00 44.85 3.20
2111 5952 7.682787 ATATGGTTGAATGGTTAGAGAGACT 57.317 36.000 0.00 0.00 0.00 3.24
2112 5953 5.152623 TGGTTGAATGGTTAGAGAGACTG 57.847 43.478 0.00 0.00 0.00 3.51
2113 5954 4.593206 TGGTTGAATGGTTAGAGAGACTGT 59.407 41.667 0.00 0.00 0.00 3.55
2114 5955 4.932200 GGTTGAATGGTTAGAGAGACTGTG 59.068 45.833 0.00 0.00 0.00 3.66
2115 5956 4.808414 TGAATGGTTAGAGAGACTGTGG 57.192 45.455 0.00 0.00 0.00 4.17
2116 5957 4.160329 TGAATGGTTAGAGAGACTGTGGT 58.840 43.478 0.00 0.00 0.00 4.16
2117 5958 5.330233 TGAATGGTTAGAGAGACTGTGGTA 58.670 41.667 0.00 0.00 0.00 3.25
2118 5959 5.958380 TGAATGGTTAGAGAGACTGTGGTAT 59.042 40.000 0.00 0.00 0.00 2.73
2119 5960 6.096987 TGAATGGTTAGAGAGACTGTGGTATC 59.903 42.308 0.00 0.00 34.24 2.24
2120 5961 4.279145 TGGTTAGAGAGACTGTGGTATCC 58.721 47.826 0.00 0.00 34.54 2.59
2121 5962 3.637694 GGTTAGAGAGACTGTGGTATCCC 59.362 52.174 0.00 0.00 34.54 3.85
2122 5963 2.463047 AGAGAGACTGTGGTATCCCC 57.537 55.000 0.00 0.00 34.54 4.81
2123 5964 1.646447 AGAGAGACTGTGGTATCCCCA 59.354 52.381 0.00 0.00 42.51 4.96
2124 5965 2.035632 GAGAGACTGTGGTATCCCCAG 58.964 57.143 0.00 0.00 46.45 4.45
2125 5966 0.466124 GAGACTGTGGTATCCCCAGC 59.534 60.000 0.00 0.00 46.45 4.85
2126 5967 0.983378 AGACTGTGGTATCCCCAGCC 60.983 60.000 0.00 0.00 46.45 4.85
2127 5968 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
2128 5969 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
2129 5970 1.308657 TGTGGTATCCCCAGCCCAT 60.309 57.895 0.00 0.00 46.45 4.00
2130 5971 1.352622 TGTGGTATCCCCAGCCCATC 61.353 60.000 0.00 0.00 46.45 3.51
2131 5972 1.005423 TGGTATCCCCAGCCCATCA 59.995 57.895 0.00 0.00 38.72 3.07
2132 5973 1.061905 TGGTATCCCCAGCCCATCAG 61.062 60.000 0.00 0.00 38.72 2.90
2133 5974 1.763770 GTATCCCCAGCCCATCAGG 59.236 63.158 0.00 0.00 39.47 3.86
2134 5975 0.768221 GTATCCCCAGCCCATCAGGA 60.768 60.000 0.00 0.00 38.24 3.86
2135 5976 0.196888 TATCCCCAGCCCATCAGGAT 59.803 55.000 0.00 0.00 40.43 3.24
2136 5977 0.703758 ATCCCCAGCCCATCAGGATT 60.704 55.000 0.00 0.00 38.24 3.01
2137 5978 1.152368 CCCCAGCCCATCAGGATTC 59.848 63.158 0.00 0.00 38.24 2.52
2138 5979 1.648302 CCCCAGCCCATCAGGATTCA 61.648 60.000 0.00 0.00 38.24 2.57
2139 5980 0.259647 CCCAGCCCATCAGGATTCAA 59.740 55.000 0.00 0.00 38.24 2.69
2140 5981 1.342275 CCCAGCCCATCAGGATTCAAA 60.342 52.381 0.00 0.00 38.24 2.69
2141 5982 2.674420 CCAGCCCATCAGGATTCAAAT 58.326 47.619 0.00 0.00 38.24 2.32
2142 5983 2.626743 CCAGCCCATCAGGATTCAAATC 59.373 50.000 0.00 0.00 38.24 2.17
2153 5994 3.136808 GATTCAAATCCTCGTGGTTGC 57.863 47.619 2.99 0.00 34.23 4.17
2154 5995 1.974265 TTCAAATCCTCGTGGTTGCA 58.026 45.000 2.99 0.00 34.23 4.08
2155 5996 2.198827 TCAAATCCTCGTGGTTGCAT 57.801 45.000 2.99 0.00 34.23 3.96
2156 5997 2.513753 TCAAATCCTCGTGGTTGCATT 58.486 42.857 2.99 0.00 34.23 3.56
2157 5998 2.890311 TCAAATCCTCGTGGTTGCATTT 59.110 40.909 2.99 0.00 34.23 2.32
2158 5999 4.075682 TCAAATCCTCGTGGTTGCATTTA 58.924 39.130 2.99 0.00 34.23 1.40
2159 6000 4.704540 TCAAATCCTCGTGGTTGCATTTAT 59.295 37.500 2.99 0.00 34.23 1.40
2160 6001 5.184864 TCAAATCCTCGTGGTTGCATTTATT 59.815 36.000 2.99 0.00 34.23 1.40
2161 6002 5.659440 AATCCTCGTGGTTGCATTTATTT 57.341 34.783 2.99 0.00 34.23 1.40
2162 6003 4.695217 TCCTCGTGGTTGCATTTATTTC 57.305 40.909 2.99 0.00 34.23 2.17
2163 6004 4.331968 TCCTCGTGGTTGCATTTATTTCT 58.668 39.130 2.99 0.00 34.23 2.52
2164 6005 4.155826 TCCTCGTGGTTGCATTTATTTCTG 59.844 41.667 2.99 0.00 34.23 3.02
2165 6006 4.414852 CTCGTGGTTGCATTTATTTCTGG 58.585 43.478 0.00 0.00 0.00 3.86
2166 6007 4.075682 TCGTGGTTGCATTTATTTCTGGA 58.924 39.130 0.00 0.00 0.00 3.86
2167 6008 4.704540 TCGTGGTTGCATTTATTTCTGGAT 59.295 37.500 0.00 0.00 0.00 3.41
2168 6009 5.184864 TCGTGGTTGCATTTATTTCTGGATT 59.815 36.000 0.00 0.00 0.00 3.01
2169 6010 5.868801 CGTGGTTGCATTTATTTCTGGATTT 59.131 36.000 0.00 0.00 0.00 2.17
2170 6011 7.032580 CGTGGTTGCATTTATTTCTGGATTTA 58.967 34.615 0.00 0.00 0.00 1.40
2171 6012 7.706179 CGTGGTTGCATTTATTTCTGGATTTAT 59.294 33.333 0.00 0.00 0.00 1.40
2172 6013 9.382275 GTGGTTGCATTTATTTCTGGATTTATT 57.618 29.630 0.00 0.00 0.00 1.40
2173 6014 9.956640 TGGTTGCATTTATTTCTGGATTTATTT 57.043 25.926 0.00 0.00 0.00 1.40
2185 6026 7.817418 TCTGGATTTATTTTAGGATTTCCGG 57.183 36.000 0.00 0.00 42.08 5.14
2186 6027 6.264518 TCTGGATTTATTTTAGGATTTCCGGC 59.735 38.462 0.00 0.00 42.08 6.13
2187 6028 5.894393 TGGATTTATTTTAGGATTTCCGGCA 59.106 36.000 0.00 0.00 42.08 5.69
2188 6029 6.381420 TGGATTTATTTTAGGATTTCCGGCAA 59.619 34.615 0.00 0.00 42.08 4.52
2189 6030 7.070571 TGGATTTATTTTAGGATTTCCGGCAAT 59.929 33.333 0.00 0.00 42.08 3.56
2190 6031 7.384932 GGATTTATTTTAGGATTTCCGGCAATG 59.615 37.037 3.34 0.00 42.08 2.82
2191 6032 3.518634 TTTTAGGATTTCCGGCAATGC 57.481 42.857 10.26 10.26 42.08 3.56
2192 6033 1.021202 TTAGGATTTCCGGCAATGCG 58.979 50.000 12.24 0.00 42.08 4.73
2193 6034 1.444119 TAGGATTTCCGGCAATGCGC 61.444 55.000 12.24 0.00 42.08 6.09
2194 6035 2.489285 GATTTCCGGCAATGCGCA 59.511 55.556 14.96 14.96 45.17 6.09
2195 6036 1.066257 GATTTCCGGCAATGCGCAT 59.934 52.632 19.28 19.28 45.17 4.73
2196 6037 0.528249 GATTTCCGGCAATGCGCATT 60.528 50.000 29.36 29.36 45.17 3.56
2197 6038 0.528249 ATTTCCGGCAATGCGCATTC 60.528 50.000 31.88 23.96 45.17 2.67
2198 6039 1.871126 TTTCCGGCAATGCGCATTCA 61.871 50.000 31.88 11.35 45.17 2.57
2199 6040 2.268988 TTCCGGCAATGCGCATTCAG 62.269 55.000 31.88 22.37 45.17 3.02
2200 6041 2.486504 CGGCAATGCGCATTCAGT 59.513 55.556 31.88 9.84 45.17 3.41
2201 6042 1.870458 CGGCAATGCGCATTCAGTG 60.870 57.895 31.88 22.40 45.17 3.66
2202 6043 1.517694 GGCAATGCGCATTCAGTGG 60.518 57.895 31.88 20.95 45.17 4.00
2203 6044 1.517694 GCAATGCGCATTCAGTGGG 60.518 57.895 31.88 20.24 43.21 4.61
2204 6045 1.936436 GCAATGCGCATTCAGTGGGA 61.936 55.000 31.88 0.00 43.02 4.37
2205 6046 0.099968 CAATGCGCATTCAGTGGGAG 59.900 55.000 31.88 14.87 43.02 4.30
2206 6047 1.033746 AATGCGCATTCAGTGGGAGG 61.034 55.000 29.36 0.00 43.02 4.30
2207 6048 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
2208 6049 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
2209 6050 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
2210 6051 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
2211 6052 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
2212 6053 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
2213 6054 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
2214 6055 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2235 6076 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
2236 6077 1.672030 TCGACGACGAGGTGCCTAA 60.672 57.895 5.75 0.00 43.81 2.69
2237 6078 1.226323 CGACGACGAGGTGCCTAAG 60.226 63.158 0.00 0.00 42.66 2.18
2238 6079 1.139095 GACGACGAGGTGCCTAAGG 59.861 63.158 0.00 0.00 0.00 2.69
2239 6080 1.593296 GACGACGAGGTGCCTAAGGT 61.593 60.000 0.00 0.00 0.00 3.50
2240 6081 1.153823 CGACGAGGTGCCTAAGGTG 60.154 63.158 0.00 0.00 0.00 4.00
2241 6082 1.592400 CGACGAGGTGCCTAAGGTGA 61.592 60.000 0.00 0.00 0.00 4.02
2242 6083 0.108756 GACGAGGTGCCTAAGGTGAC 60.109 60.000 0.00 0.00 0.00 3.67
2268 6109 9.694520 CTTTGTAAAGTTCAAGATGATATGACG 57.305 33.333 0.00 0.00 0.00 4.35
2269 6110 7.770801 TGTAAAGTTCAAGATGATATGACGG 57.229 36.000 0.00 0.00 0.00 4.79
2270 6111 5.741388 AAAGTTCAAGATGATATGACGGC 57.259 39.130 0.00 0.00 0.00 5.68
2271 6112 4.679373 AGTTCAAGATGATATGACGGCT 57.321 40.909 0.00 0.00 0.00 5.52
2272 6113 4.375272 AGTTCAAGATGATATGACGGCTG 58.625 43.478 0.00 0.00 0.00 4.85
2273 6114 4.100035 AGTTCAAGATGATATGACGGCTGA 59.900 41.667 0.00 0.00 0.00 4.26
2274 6115 4.248691 TCAAGATGATATGACGGCTGAG 57.751 45.455 0.00 0.00 0.00 3.35
2275 6116 3.638627 TCAAGATGATATGACGGCTGAGT 59.361 43.478 0.00 0.00 0.00 3.41
2276 6117 3.932545 AGATGATATGACGGCTGAGTC 57.067 47.619 0.00 0.00 41.30 3.36
2277 6118 3.495331 AGATGATATGACGGCTGAGTCT 58.505 45.455 0.00 0.00 41.47 3.24
2278 6119 3.894427 AGATGATATGACGGCTGAGTCTT 59.106 43.478 0.00 0.52 41.47 3.01
2279 6120 4.343526 AGATGATATGACGGCTGAGTCTTT 59.656 41.667 0.00 0.00 41.47 2.52
2280 6121 4.471904 TGATATGACGGCTGAGTCTTTT 57.528 40.909 0.00 0.00 41.47 2.27
2281 6122 4.183865 TGATATGACGGCTGAGTCTTTTG 58.816 43.478 0.00 0.00 41.47 2.44
2282 6123 1.813513 ATGACGGCTGAGTCTTTTGG 58.186 50.000 0.00 0.00 41.47 3.28
2283 6124 0.756294 TGACGGCTGAGTCTTTTGGA 59.244 50.000 0.00 0.00 41.47 3.53
2284 6125 1.270305 TGACGGCTGAGTCTTTTGGAG 60.270 52.381 0.00 0.00 41.47 3.86
2285 6126 0.035458 ACGGCTGAGTCTTTTGGAGG 59.965 55.000 0.00 0.00 0.00 4.30
2286 6127 0.035458 CGGCTGAGTCTTTTGGAGGT 59.965 55.000 0.00 0.00 0.00 3.85
2287 6128 1.528129 GGCTGAGTCTTTTGGAGGTG 58.472 55.000 0.00 0.00 0.00 4.00
2288 6129 0.877743 GCTGAGTCTTTTGGAGGTGC 59.122 55.000 0.00 0.00 0.00 5.01
2289 6130 1.544314 GCTGAGTCTTTTGGAGGTGCT 60.544 52.381 0.00 0.00 0.00 4.40
2290 6131 2.421619 CTGAGTCTTTTGGAGGTGCTC 58.578 52.381 0.00 0.00 0.00 4.26
2291 6132 1.768275 TGAGTCTTTTGGAGGTGCTCA 59.232 47.619 0.00 0.00 31.08 4.26
2292 6133 2.373169 TGAGTCTTTTGGAGGTGCTCAT 59.627 45.455 0.00 0.00 31.08 2.90
2293 6134 3.582647 TGAGTCTTTTGGAGGTGCTCATA 59.417 43.478 0.00 0.00 31.08 2.15
2294 6135 4.187694 GAGTCTTTTGGAGGTGCTCATAG 58.812 47.826 0.00 0.00 31.08 2.23
2295 6136 3.840666 AGTCTTTTGGAGGTGCTCATAGA 59.159 43.478 0.00 0.00 31.08 1.98
2296 6137 4.081198 AGTCTTTTGGAGGTGCTCATAGAG 60.081 45.833 0.00 0.00 31.08 2.43
2297 6138 3.198635 TCTTTTGGAGGTGCTCATAGAGG 59.801 47.826 0.00 0.00 31.08 3.69
2298 6139 2.254152 TTGGAGGTGCTCATAGAGGT 57.746 50.000 0.00 0.00 31.08 3.85
2299 6140 3.398318 TTGGAGGTGCTCATAGAGGTA 57.602 47.619 0.00 0.00 31.08 3.08
2300 6141 2.950781 TGGAGGTGCTCATAGAGGTAG 58.049 52.381 0.00 0.00 31.08 3.18
2301 6142 2.243810 GGAGGTGCTCATAGAGGTAGG 58.756 57.143 0.00 0.00 31.08 3.18
2302 6143 2.243810 GAGGTGCTCATAGAGGTAGGG 58.756 57.143 0.00 0.00 0.00 3.53
2303 6144 1.576272 AGGTGCTCATAGAGGTAGGGT 59.424 52.381 0.00 0.00 0.00 4.34
2304 6145 1.689273 GGTGCTCATAGAGGTAGGGTG 59.311 57.143 0.00 0.00 0.00 4.61
2305 6146 2.389715 GTGCTCATAGAGGTAGGGTGT 58.610 52.381 0.00 0.00 0.00 4.16
2306 6147 2.101582 GTGCTCATAGAGGTAGGGTGTG 59.898 54.545 0.00 0.00 0.00 3.82
2307 6148 2.292257 TGCTCATAGAGGTAGGGTGTGT 60.292 50.000 0.00 0.00 0.00 3.72
2308 6149 2.101582 GCTCATAGAGGTAGGGTGTGTG 59.898 54.545 0.00 0.00 0.00 3.82
2309 6150 3.366396 CTCATAGAGGTAGGGTGTGTGT 58.634 50.000 0.00 0.00 0.00 3.72
2310 6151 3.096852 TCATAGAGGTAGGGTGTGTGTG 58.903 50.000 0.00 0.00 0.00 3.82
2311 6152 1.263356 TAGAGGTAGGGTGTGTGTGC 58.737 55.000 0.00 0.00 0.00 4.57
2312 6153 1.374252 GAGGTAGGGTGTGTGTGCG 60.374 63.158 0.00 0.00 0.00 5.34
2313 6154 3.047877 GGTAGGGTGTGTGTGCGC 61.048 66.667 0.00 0.00 0.00 6.09
2314 6155 3.411351 GTAGGGTGTGTGTGCGCG 61.411 66.667 0.00 0.00 0.00 6.86
2321 6162 4.368808 GTGTGTGCGCGCGTTCAT 62.369 61.111 32.35 0.00 0.00 2.57
2322 6163 2.735100 TGTGTGCGCGCGTTCATA 60.735 55.556 32.35 23.57 0.00 2.15
2323 6164 2.020016 GTGTGCGCGCGTTCATAG 59.980 61.111 32.35 0.92 0.00 2.23
2324 6165 3.185365 TGTGCGCGCGTTCATAGG 61.185 61.111 32.35 0.04 0.00 2.57
2325 6166 3.925238 GTGCGCGCGTTCATAGGG 61.925 66.667 32.35 0.00 0.00 3.53
2328 6169 3.261951 CGCGCGTTCATAGGGGTG 61.262 66.667 24.19 0.00 0.00 4.61
2329 6170 2.185867 GCGCGTTCATAGGGGTGA 59.814 61.111 8.43 0.00 0.00 4.02
2330 6171 1.883084 GCGCGTTCATAGGGGTGAG 60.883 63.158 8.43 0.00 0.00 3.51
2331 6172 1.515954 CGCGTTCATAGGGGTGAGT 59.484 57.895 0.00 0.00 0.00 3.41
2332 6173 0.806102 CGCGTTCATAGGGGTGAGTG 60.806 60.000 0.00 0.00 0.00 3.51
2333 6174 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
2334 6175 1.739371 GCGTTCATAGGGGTGAGTGTC 60.739 57.143 0.00 0.00 0.00 3.67
2335 6176 1.825474 CGTTCATAGGGGTGAGTGTCT 59.175 52.381 0.00 0.00 0.00 3.41
2336 6177 2.417379 CGTTCATAGGGGTGAGTGTCTG 60.417 54.545 0.00 0.00 0.00 3.51
2337 6178 1.195115 TCATAGGGGTGAGTGTCTGC 58.805 55.000 0.00 0.00 0.00 4.26
2338 6179 0.179100 CATAGGGGTGAGTGTCTGCG 60.179 60.000 0.00 0.00 0.00 5.18
2339 6180 1.961180 ATAGGGGTGAGTGTCTGCGC 61.961 60.000 0.00 0.00 0.00 6.09
2340 6181 4.314440 GGGGTGAGTGTCTGCGCA 62.314 66.667 10.98 10.98 0.00 6.09
2341 6182 2.046892 GGGTGAGTGTCTGCGCAT 60.047 61.111 12.24 0.00 0.00 4.73
2342 6183 1.218047 GGGTGAGTGTCTGCGCATA 59.782 57.895 12.24 0.00 0.00 3.14
2343 6184 0.179073 GGGTGAGTGTCTGCGCATAT 60.179 55.000 12.24 0.00 0.00 1.78
2344 6185 1.068588 GGGTGAGTGTCTGCGCATATA 59.931 52.381 12.24 0.00 0.00 0.86
2345 6186 2.289072 GGGTGAGTGTCTGCGCATATAT 60.289 50.000 12.24 0.00 0.00 0.86
2346 6187 3.056821 GGGTGAGTGTCTGCGCATATATA 60.057 47.826 12.24 0.00 0.00 0.86
2347 6188 4.382040 GGGTGAGTGTCTGCGCATATATAT 60.382 45.833 12.24 0.00 0.00 0.86
2348 6189 4.564372 GGTGAGTGTCTGCGCATATATATG 59.436 45.833 12.24 17.01 36.78 1.78
2349 6190 5.402398 GTGAGTGTCTGCGCATATATATGA 58.598 41.667 24.06 0.00 35.75 2.15
2350 6191 5.514559 GTGAGTGTCTGCGCATATATATGAG 59.485 44.000 24.06 21.40 35.75 2.90
2357 6198 3.230305 CGCATATATATGAGCGCTTGC 57.770 47.619 24.06 14.20 43.80 4.01
2358 6199 2.347016 CGCATATATATGAGCGCTTGCG 60.347 50.000 27.50 27.50 43.80 4.85
2359 6200 2.604914 GCATATATATGAGCGCTTGCGT 59.395 45.455 24.06 3.24 37.67 5.24
2360 6201 3.302092 GCATATATATGAGCGCTTGCGTC 60.302 47.826 24.06 12.36 37.67 5.19
2361 6202 2.732412 ATATATGAGCGCTTGCGTCT 57.268 45.000 13.26 13.17 45.69 4.18
2362 6203 1.770957 TATATGAGCGCTTGCGTCTG 58.229 50.000 13.26 0.00 45.69 3.51
2363 6204 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
2364 6205 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
2365 6206 0.179100 ATGAGCGCTTGCGTCTGTAT 60.179 50.000 13.26 7.95 45.69 2.29
2366 6207 0.389817 TGAGCGCTTGCGTCTGTATT 60.390 50.000 13.26 0.00 45.69 1.89
2367 6208 0.025513 GAGCGCTTGCGTCTGTATTG 59.974 55.000 13.26 0.00 45.69 1.90
2368 6209 0.389817 AGCGCTTGCGTCTGTATTGA 60.390 50.000 16.38 0.00 45.69 2.57
2369 6210 0.652592 GCGCTTGCGTCTGTATTGAT 59.347 50.000 16.38 0.00 0.00 2.57
2370 6211 1.593070 GCGCTTGCGTCTGTATTGATG 60.593 52.381 16.38 0.00 0.00 3.07
2371 6212 1.660607 CGCTTGCGTCTGTATTGATGT 59.339 47.619 6.86 0.00 0.00 3.06
2372 6213 2.094258 CGCTTGCGTCTGTATTGATGTT 59.906 45.455 6.86 0.00 0.00 2.71
2373 6214 3.674423 GCTTGCGTCTGTATTGATGTTC 58.326 45.455 0.00 0.00 0.00 3.18
2374 6215 3.125146 GCTTGCGTCTGTATTGATGTTCA 59.875 43.478 0.00 0.00 0.00 3.18
2375 6216 4.378356 GCTTGCGTCTGTATTGATGTTCAA 60.378 41.667 0.00 0.00 41.09 2.69
2376 6217 5.681337 TTGCGTCTGTATTGATGTTCAAA 57.319 34.783 0.00 0.00 40.12 2.69
2377 6218 5.681337 TGCGTCTGTATTGATGTTCAAAA 57.319 34.783 0.00 0.00 40.12 2.44
2378 6219 6.066054 TGCGTCTGTATTGATGTTCAAAAA 57.934 33.333 0.00 0.00 40.12 1.94
2432 6273 0.106819 ACCTCAGCATGGAATCTGGC 60.107 55.000 0.00 0.00 36.16 4.85
2436 6277 1.107538 CAGCATGGAATCTGGCCAGG 61.108 60.000 32.23 15.33 39.11 4.45
2437 6278 3.851955 CATGGAATCTGGCCAGGC 58.148 61.111 32.23 20.62 39.11 4.85
2470 6311 2.106418 GTCGCGTGGAAAACTGTTTTC 58.894 47.619 29.02 29.02 46.36 2.29
2557 6398 1.542108 GGCATGCTGACCTACTCATCC 60.542 57.143 18.92 0.00 0.00 3.51
2588 6429 9.860898 GAAAACTTGATTTACCTTAGCATGAAT 57.139 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.619161 GCCAACATTTGTAGCTTCAAAATAACG 60.619 37.037 20.42 10.58 40.05 3.18
120 121 2.228841 ATCCCTCACCAATGCACCCC 62.229 60.000 0.00 0.00 0.00 4.95
121 122 0.324645 AATCCCTCACCAATGCACCC 60.325 55.000 0.00 0.00 0.00 4.61
122 123 1.205417 CAAATCCCTCACCAATGCACC 59.795 52.381 0.00 0.00 0.00 5.01
123 124 1.404583 GCAAATCCCTCACCAATGCAC 60.405 52.381 0.00 0.00 32.80 4.57
124 125 0.896923 GCAAATCCCTCACCAATGCA 59.103 50.000 0.00 0.00 32.80 3.96
125 126 0.176449 GGCAAATCCCTCACCAATGC 59.824 55.000 0.00 0.00 0.00 3.56
323 324 1.423584 TCTGCAGAGACAACCCTCAA 58.576 50.000 13.74 0.00 35.68 3.02
365 366 6.802608 AGTCATCATCCATAGTTTGCATTTG 58.197 36.000 0.00 0.00 0.00 2.32
555 556 8.842358 ACGTAAAAACATCTCCATTTCTAAGA 57.158 30.769 0.00 0.00 0.00 2.10
635 636 8.433421 TTTCAACAACAACACCTTTAAAAACA 57.567 26.923 0.00 0.00 0.00 2.83
636 637 9.717892 TTTTTCAACAACAACACCTTTAAAAAC 57.282 25.926 0.00 0.00 0.00 2.43
663 664 4.913335 TCAACAGACTACAACGAAGAGT 57.087 40.909 0.00 0.00 0.00 3.24
723 724 0.897621 AACCAAAGCTATGCCAAGGC 59.102 50.000 3.61 3.61 42.35 4.35
759 760 5.593095 GGTCTATCCTCGTATACCATGCATA 59.407 44.000 0.00 0.00 0.00 3.14
760 761 4.402793 GGTCTATCCTCGTATACCATGCAT 59.597 45.833 0.00 0.00 0.00 3.96
761 762 3.762288 GGTCTATCCTCGTATACCATGCA 59.238 47.826 0.00 0.00 0.00 3.96
762 763 3.181499 CGGTCTATCCTCGTATACCATGC 60.181 52.174 0.00 0.00 0.00 4.06
763 764 4.259356 TCGGTCTATCCTCGTATACCATG 58.741 47.826 0.00 0.00 0.00 3.66
764 765 4.224594 TCTCGGTCTATCCTCGTATACCAT 59.775 45.833 0.00 0.00 0.00 3.55
765 766 3.580022 TCTCGGTCTATCCTCGTATACCA 59.420 47.826 0.00 0.00 0.00 3.25
766 767 4.081752 TCTCTCGGTCTATCCTCGTATACC 60.082 50.000 0.00 0.00 0.00 2.73
767 768 5.070770 TCTCTCGGTCTATCCTCGTATAC 57.929 47.826 0.00 0.00 0.00 1.47
768 769 4.381825 GCTCTCTCGGTCTATCCTCGTATA 60.382 50.000 0.00 0.00 0.00 1.47
769 770 3.618019 GCTCTCTCGGTCTATCCTCGTAT 60.618 52.174 0.00 0.00 0.00 3.06
770 771 2.288948 GCTCTCTCGGTCTATCCTCGTA 60.289 54.545 0.00 0.00 0.00 3.43
771 772 1.541670 GCTCTCTCGGTCTATCCTCGT 60.542 57.143 0.00 0.00 0.00 4.18
772 773 1.153353 GCTCTCTCGGTCTATCCTCG 58.847 60.000 0.00 0.00 0.00 4.63
773 774 1.073284 AGGCTCTCTCGGTCTATCCTC 59.927 57.143 0.00 0.00 0.00 3.71
774 775 1.145571 AGGCTCTCTCGGTCTATCCT 58.854 55.000 0.00 0.00 0.00 3.24
775 776 1.243902 CAGGCTCTCTCGGTCTATCC 58.756 60.000 0.00 0.00 0.00 2.59
776 777 0.596082 GCAGGCTCTCTCGGTCTATC 59.404 60.000 0.00 0.00 0.00 2.08
777 778 0.106469 TGCAGGCTCTCTCGGTCTAT 60.106 55.000 0.00 0.00 0.00 1.98
778 779 0.749818 CTGCAGGCTCTCTCGGTCTA 60.750 60.000 5.57 0.00 0.00 2.59
779 780 2.036414 TGCAGGCTCTCTCGGTCT 59.964 61.111 0.00 0.00 0.00 3.85
780 781 1.391157 ATCTGCAGGCTCTCTCGGTC 61.391 60.000 15.13 0.00 0.00 4.79
781 782 1.381056 ATCTGCAGGCTCTCTCGGT 60.381 57.895 15.13 0.00 0.00 4.69
782 783 1.067749 CATCTGCAGGCTCTCTCGG 59.932 63.158 15.13 0.00 0.00 4.63
783 784 1.067749 CCATCTGCAGGCTCTCTCG 59.932 63.158 15.13 0.00 0.00 4.04
791 792 2.124819 AGCTTCGCCATCTGCAGG 60.125 61.111 15.13 0.00 41.33 4.85
792 793 2.523507 CGAGCTTCGCCATCTGCAG 61.524 63.158 7.63 7.63 41.33 4.41
793 794 2.505635 TTCGAGCTTCGCCATCTGCA 62.506 55.000 0.00 0.00 40.21 4.41
794 795 1.760268 CTTCGAGCTTCGCCATCTGC 61.760 60.000 0.00 0.00 40.21 4.26
795 796 1.150567 CCTTCGAGCTTCGCCATCTG 61.151 60.000 0.00 0.00 40.21 2.90
796 797 1.142748 CCTTCGAGCTTCGCCATCT 59.857 57.895 0.00 0.00 40.21 2.90
797 798 2.529619 GCCTTCGAGCTTCGCCATC 61.530 63.158 0.00 0.00 40.21 3.51
798 799 2.512515 GCCTTCGAGCTTCGCCAT 60.513 61.111 0.00 0.00 40.21 4.40
803 804 3.191539 CTGCCGCCTTCGAGCTTC 61.192 66.667 0.00 0.00 38.10 3.86
804 805 4.767255 CCTGCCGCCTTCGAGCTT 62.767 66.667 0.00 0.00 38.10 3.74
806 807 4.760047 TTCCTGCCGCCTTCGAGC 62.760 66.667 0.00 0.00 38.10 5.03
807 808 2.510238 CTTCCTGCCGCCTTCGAG 60.510 66.667 0.00 0.00 38.10 4.04
808 809 2.994995 TCTTCCTGCCGCCTTCGA 60.995 61.111 0.00 0.00 38.10 3.71
809 810 2.510238 CTCTTCCTGCCGCCTTCG 60.510 66.667 0.00 0.00 0.00 3.79
810 811 2.821810 GCTCTTCCTGCCGCCTTC 60.822 66.667 0.00 0.00 0.00 3.46
811 812 3.196207 TTGCTCTTCCTGCCGCCTT 62.196 57.895 0.00 0.00 0.00 4.35
812 813 3.618780 CTTGCTCTTCCTGCCGCCT 62.619 63.158 0.00 0.00 0.00 5.52
813 814 3.130160 CTTGCTCTTCCTGCCGCC 61.130 66.667 0.00 0.00 0.00 6.13
814 815 3.130160 CCTTGCTCTTCCTGCCGC 61.130 66.667 0.00 0.00 0.00 6.53
815 816 1.302832 AACCTTGCTCTTCCTGCCG 60.303 57.895 0.00 0.00 0.00 5.69
816 817 0.538287 ACAACCTTGCTCTTCCTGCC 60.538 55.000 0.00 0.00 0.00 4.85
817 818 0.877743 GACAACCTTGCTCTTCCTGC 59.122 55.000 0.00 0.00 0.00 4.85
818 819 1.151668 CGACAACCTTGCTCTTCCTG 58.848 55.000 0.00 0.00 0.00 3.86
819 820 1.048601 TCGACAACCTTGCTCTTCCT 58.951 50.000 0.00 0.00 0.00 3.36
820 821 1.149148 GTCGACAACCTTGCTCTTCC 58.851 55.000 11.55 0.00 0.00 3.46
821 822 0.784778 CGTCGACAACCTTGCTCTTC 59.215 55.000 17.16 0.00 0.00 2.87
822 823 0.387929 TCGTCGACAACCTTGCTCTT 59.612 50.000 17.16 0.00 0.00 2.85
823 824 0.387929 TTCGTCGACAACCTTGCTCT 59.612 50.000 17.16 0.00 0.00 4.09
824 825 0.784778 CTTCGTCGACAACCTTGCTC 59.215 55.000 17.16 0.00 0.00 4.26
825 826 1.222115 GCTTCGTCGACAACCTTGCT 61.222 55.000 17.16 0.00 0.00 3.91
826 827 1.204312 GCTTCGTCGACAACCTTGC 59.796 57.895 17.16 6.77 0.00 4.01
827 828 0.878523 TGGCTTCGTCGACAACCTTG 60.879 55.000 17.16 0.00 0.00 3.61
828 829 0.034896 ATGGCTTCGTCGACAACCTT 59.965 50.000 17.16 6.10 0.00 3.50
829 830 0.670546 CATGGCTTCGTCGACAACCT 60.671 55.000 17.16 0.00 0.00 3.50
830 831 1.635663 CCATGGCTTCGTCGACAACC 61.636 60.000 17.16 10.95 0.00 3.77
831 832 0.669318 TCCATGGCTTCGTCGACAAC 60.669 55.000 17.16 0.83 0.00 3.32
832 833 0.389817 CTCCATGGCTTCGTCGACAA 60.390 55.000 17.16 8.19 0.00 3.18
833 834 1.215382 CTCCATGGCTTCGTCGACA 59.785 57.895 17.16 0.00 0.00 4.35
834 835 0.526524 CTCTCCATGGCTTCGTCGAC 60.527 60.000 6.96 5.18 0.00 4.20
835 836 1.667154 CCTCTCCATGGCTTCGTCGA 61.667 60.000 6.96 0.00 0.00 4.20
836 837 1.227089 CCTCTCCATGGCTTCGTCG 60.227 63.158 6.96 0.00 0.00 5.12
837 838 0.460987 CACCTCTCCATGGCTTCGTC 60.461 60.000 6.96 0.00 0.00 4.20
838 839 1.599047 CACCTCTCCATGGCTTCGT 59.401 57.895 6.96 0.00 0.00 3.85
839 840 1.153289 CCACCTCTCCATGGCTTCG 60.153 63.158 6.96 0.00 0.00 3.79
840 841 4.972875 CCACCTCTCCATGGCTTC 57.027 61.111 6.96 0.00 0.00 3.86
844 845 0.962356 GTTGTGCCACCTCTCCATGG 60.962 60.000 4.97 4.97 39.16 3.66
845 846 0.962356 GGTTGTGCCACCTCTCCATG 60.962 60.000 0.00 0.00 37.17 3.66
846 847 1.380302 GGTTGTGCCACCTCTCCAT 59.620 57.895 0.00 0.00 37.17 3.41
847 848 2.836154 GGTTGTGCCACCTCTCCA 59.164 61.111 0.00 0.00 37.17 3.86
848 849 2.358737 CGGTTGTGCCACCTCTCC 60.359 66.667 0.00 0.00 36.97 3.71
849 850 1.227853 AACGGTTGTGCCACCTCTC 60.228 57.895 0.00 0.00 36.97 3.20
850 851 1.227853 GAACGGTTGTGCCACCTCT 60.228 57.895 0.00 0.00 36.97 3.69
851 852 2.258726 GGAACGGTTGTGCCACCTC 61.259 63.158 0.00 0.00 44.22 3.85
852 853 2.203294 GGAACGGTTGTGCCACCT 60.203 61.111 0.00 0.00 44.22 4.00
856 857 3.340789 GTCAGGAACGGTTGTGCC 58.659 61.111 0.00 0.00 45.32 5.01
865 866 3.991536 GAGGCCGAGCGTCAGGAAC 62.992 68.421 11.90 0.00 42.14 3.62
866 867 2.831894 TAGAGGCCGAGCGTCAGGAA 62.832 60.000 16.95 2.04 44.54 3.36
867 868 3.339738 TAGAGGCCGAGCGTCAGGA 62.340 63.158 16.95 3.73 44.54 3.86
868 869 2.829003 TAGAGGCCGAGCGTCAGG 60.829 66.667 16.95 0.00 44.54 3.86
869 870 2.115911 AGTAGAGGCCGAGCGTCAG 61.116 63.158 16.95 0.00 44.54 3.51
870 871 2.045242 AGTAGAGGCCGAGCGTCA 60.045 61.111 16.95 4.78 44.54 4.35
871 872 2.409651 CAGTAGAGGCCGAGCGTC 59.590 66.667 0.00 9.61 42.77 5.19
872 873 3.141488 CCAGTAGAGGCCGAGCGT 61.141 66.667 0.00 0.00 0.00 5.07
938 939 2.498644 AAGAGGCCTTTAAGTGCTCC 57.501 50.000 6.77 0.00 0.00 4.70
1225 1240 5.240623 AGGCATACACGATTTTCAGTTCAAA 59.759 36.000 0.00 0.00 0.00 2.69
1246 1261 4.107051 GGACATGCGCACACAGGC 62.107 66.667 14.90 5.05 0.00 4.85
1378 1402 2.757894 AGGAGACGGTGATATCCAGT 57.242 50.000 0.00 0.00 34.08 4.00
1425 1449 4.330894 CGCGGGAAGACATATACTCGTATA 59.669 45.833 0.00 0.00 33.09 1.47
1461 1549 2.880890 CCAAGTCCCAACTCACAAGAAG 59.119 50.000 0.00 0.00 33.48 2.85
1463 1551 1.142870 CCCAAGTCCCAACTCACAAGA 59.857 52.381 0.00 0.00 33.48 3.02
1552 1653 4.308458 CACCCCGTCTTGTCGCCA 62.308 66.667 0.00 0.00 0.00 5.69
1702 1834 4.216731 GCTAGCAAAGACAACCGTTTTAC 58.783 43.478 10.63 0.00 0.00 2.01
2028 5506 6.108687 CACTTGAGAGGATTTGTGCTACATA 58.891 40.000 0.00 0.00 0.00 2.29
2029 5507 4.940046 CACTTGAGAGGATTTGTGCTACAT 59.060 41.667 0.00 0.00 0.00 2.29
2030 5508 4.318332 CACTTGAGAGGATTTGTGCTACA 58.682 43.478 0.00 0.00 0.00 2.74
2043 5521 0.671472 TGGTCATGCGCACTTGAGAG 60.671 55.000 14.90 0.00 31.18 3.20
2044 5522 0.250252 TTGGTCATGCGCACTTGAGA 60.250 50.000 14.90 2.86 31.18 3.27
2051 5892 2.182496 CAAGGATTGGTCATGCGCA 58.818 52.632 14.96 14.96 43.94 6.09
2068 5909 3.558931 ATATTGGTTCGCTGATGGTCA 57.441 42.857 0.00 0.00 0.00 4.02
2085 5926 9.386122 AGTCTCTCTAACCATTCAACCATATAT 57.614 33.333 0.00 0.00 0.00 0.86
2086 5927 8.642432 CAGTCTCTCTAACCATTCAACCATATA 58.358 37.037 0.00 0.00 0.00 0.86
2087 5928 7.126421 ACAGTCTCTCTAACCATTCAACCATAT 59.874 37.037 0.00 0.00 0.00 1.78
2088 5929 6.440647 ACAGTCTCTCTAACCATTCAACCATA 59.559 38.462 0.00 0.00 0.00 2.74
2089 5930 5.249393 ACAGTCTCTCTAACCATTCAACCAT 59.751 40.000 0.00 0.00 0.00 3.55
2090 5931 4.593206 ACAGTCTCTCTAACCATTCAACCA 59.407 41.667 0.00 0.00 0.00 3.67
2091 5932 4.932200 CACAGTCTCTCTAACCATTCAACC 59.068 45.833 0.00 0.00 0.00 3.77
2092 5933 4.932200 CCACAGTCTCTCTAACCATTCAAC 59.068 45.833 0.00 0.00 0.00 3.18
2093 5934 4.593206 ACCACAGTCTCTCTAACCATTCAA 59.407 41.667 0.00 0.00 0.00 2.69
2094 5935 4.160329 ACCACAGTCTCTCTAACCATTCA 58.840 43.478 0.00 0.00 0.00 2.57
2095 5936 4.810191 ACCACAGTCTCTCTAACCATTC 57.190 45.455 0.00 0.00 0.00 2.67
2096 5937 5.364157 GGATACCACAGTCTCTCTAACCATT 59.636 44.000 0.00 0.00 0.00 3.16
2097 5938 4.896482 GGATACCACAGTCTCTCTAACCAT 59.104 45.833 0.00 0.00 0.00 3.55
2098 5939 4.279145 GGATACCACAGTCTCTCTAACCA 58.721 47.826 0.00 0.00 0.00 3.67
2099 5940 4.922471 GGATACCACAGTCTCTCTAACC 57.078 50.000 0.00 0.00 0.00 2.85
2115 5956 0.768221 TCCTGATGGGCTGGGGATAC 60.768 60.000 0.00 0.00 36.34 2.24
2116 5957 0.196888 ATCCTGATGGGCTGGGGATA 59.803 55.000 0.00 0.00 35.34 2.59
2117 5958 0.703758 AATCCTGATGGGCTGGGGAT 60.704 55.000 0.00 0.00 38.29 3.85
2118 5959 1.309013 AATCCTGATGGGCTGGGGA 60.309 57.895 0.00 0.00 36.34 4.81
2119 5960 1.152368 GAATCCTGATGGGCTGGGG 59.848 63.158 0.00 0.00 36.34 4.96
2120 5961 0.259647 TTGAATCCTGATGGGCTGGG 59.740 55.000 0.00 0.00 36.34 4.45
2121 5962 2.148446 TTTGAATCCTGATGGGCTGG 57.852 50.000 0.00 0.00 36.97 4.85
2133 5974 2.487762 TGCAACCACGAGGATTTGAATC 59.512 45.455 5.68 0.00 38.69 2.52
2134 5975 2.513753 TGCAACCACGAGGATTTGAAT 58.486 42.857 5.68 0.00 38.69 2.57
2135 5976 1.974265 TGCAACCACGAGGATTTGAA 58.026 45.000 5.68 0.00 38.69 2.69
2136 5977 2.198827 ATGCAACCACGAGGATTTGA 57.801 45.000 5.68 0.00 38.69 2.69
2137 5978 3.302365 AAATGCAACCACGAGGATTTG 57.698 42.857 5.68 1.64 35.01 2.32
2138 5979 5.659440 AATAAATGCAACCACGAGGATTT 57.341 34.783 5.68 3.81 38.88 2.17
2139 5980 5.418840 AGAAATAAATGCAACCACGAGGATT 59.581 36.000 5.68 0.00 38.69 3.01
2140 5981 4.949856 AGAAATAAATGCAACCACGAGGAT 59.050 37.500 5.68 0.00 38.69 3.24
2141 5982 4.155826 CAGAAATAAATGCAACCACGAGGA 59.844 41.667 5.68 0.00 38.69 3.71
2142 5983 4.414852 CAGAAATAAATGCAACCACGAGG 58.585 43.478 0.00 0.00 42.21 4.63
2143 5984 4.155826 TCCAGAAATAAATGCAACCACGAG 59.844 41.667 0.00 0.00 0.00 4.18
2144 5985 4.075682 TCCAGAAATAAATGCAACCACGA 58.924 39.130 0.00 0.00 0.00 4.35
2145 5986 4.433186 TCCAGAAATAAATGCAACCACG 57.567 40.909 0.00 0.00 0.00 4.94
2146 5987 8.947055 ATAAATCCAGAAATAAATGCAACCAC 57.053 30.769 0.00 0.00 0.00 4.16
2147 5988 9.956640 AAATAAATCCAGAAATAAATGCAACCA 57.043 25.926 0.00 0.00 0.00 3.67
2159 6000 8.691797 CCGGAAATCCTAAAATAAATCCAGAAA 58.308 33.333 0.00 0.00 0.00 2.52
2160 6001 7.201875 GCCGGAAATCCTAAAATAAATCCAGAA 60.202 37.037 5.05 0.00 0.00 3.02
2161 6002 6.264518 GCCGGAAATCCTAAAATAAATCCAGA 59.735 38.462 5.05 0.00 0.00 3.86
2162 6003 6.040391 TGCCGGAAATCCTAAAATAAATCCAG 59.960 38.462 5.05 0.00 0.00 3.86
2163 6004 5.894393 TGCCGGAAATCCTAAAATAAATCCA 59.106 36.000 5.05 0.00 0.00 3.41
2164 6005 6.399639 TGCCGGAAATCCTAAAATAAATCC 57.600 37.500 5.05 0.00 0.00 3.01
2165 6006 7.095649 GCATTGCCGGAAATCCTAAAATAAATC 60.096 37.037 4.04 0.00 0.00 2.17
2166 6007 6.705825 GCATTGCCGGAAATCCTAAAATAAAT 59.294 34.615 4.04 0.00 0.00 1.40
2167 6008 6.045955 GCATTGCCGGAAATCCTAAAATAAA 58.954 36.000 4.04 0.00 0.00 1.40
2168 6009 5.596845 GCATTGCCGGAAATCCTAAAATAA 58.403 37.500 4.04 0.00 0.00 1.40
2169 6010 4.261405 CGCATTGCCGGAAATCCTAAAATA 60.261 41.667 4.04 0.00 0.00 1.40
2170 6011 3.490761 CGCATTGCCGGAAATCCTAAAAT 60.491 43.478 4.04 0.00 0.00 1.82
2171 6012 2.159310 CGCATTGCCGGAAATCCTAAAA 60.159 45.455 4.04 0.00 0.00 1.52
2172 6013 1.403679 CGCATTGCCGGAAATCCTAAA 59.596 47.619 4.04 0.00 0.00 1.85
2173 6014 1.021202 CGCATTGCCGGAAATCCTAA 58.979 50.000 4.04 0.00 0.00 2.69
2174 6015 1.444119 GCGCATTGCCGGAAATCCTA 61.444 55.000 4.04 0.00 37.76 2.94
2175 6016 2.774799 GCGCATTGCCGGAAATCCT 61.775 57.895 4.04 0.00 37.76 3.24
2176 6017 2.278792 GCGCATTGCCGGAAATCC 60.279 61.111 4.04 0.00 37.76 3.01
2177 6018 0.528249 AATGCGCATTGCCGGAAATC 60.528 50.000 33.48 0.00 45.60 2.17
2178 6019 0.528249 GAATGCGCATTGCCGGAAAT 60.528 50.000 38.34 13.06 45.60 2.17
2179 6020 1.153862 GAATGCGCATTGCCGGAAA 60.154 52.632 38.34 0.00 45.60 3.13
2180 6021 2.268988 CTGAATGCGCATTGCCGGAA 62.269 55.000 38.34 15.71 45.60 4.30
2181 6022 2.749441 TGAATGCGCATTGCCGGA 60.749 55.556 38.34 14.66 45.60 5.14
2182 6023 2.278336 CTGAATGCGCATTGCCGG 60.278 61.111 38.34 25.15 45.60 6.13
2183 6024 1.870458 CACTGAATGCGCATTGCCG 60.870 57.895 38.34 25.83 45.60 5.69
2184 6025 1.517694 CCACTGAATGCGCATTGCC 60.518 57.895 38.34 24.99 45.60 4.52
2185 6026 1.517694 CCCACTGAATGCGCATTGC 60.518 57.895 38.34 27.21 46.70 3.56
2186 6027 0.099968 CTCCCACTGAATGCGCATTG 59.900 55.000 38.34 26.52 0.00 2.82
2187 6028 1.033746 CCTCCCACTGAATGCGCATT 61.034 55.000 34.41 34.41 0.00 3.56
2188 6029 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
2189 6030 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
2190 6031 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
2191 6032 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
2192 6033 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
2193 6034 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
2194 6035 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
2195 6036 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
2196 6037 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
2197 6038 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
2198 6039 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
2217 6058 1.915614 TTAGGCACCTCGTCGTCGAC 61.916 60.000 15.51 15.51 41.35 4.20
2218 6059 1.642037 CTTAGGCACCTCGTCGTCGA 61.642 60.000 4.42 4.42 44.12 4.20
2219 6060 1.226323 CTTAGGCACCTCGTCGTCG 60.226 63.158 0.00 0.00 38.55 5.12
2220 6061 1.139095 CCTTAGGCACCTCGTCGTC 59.861 63.158 0.00 0.00 0.00 4.20
2221 6062 1.605738 ACCTTAGGCACCTCGTCGT 60.606 57.895 0.00 0.00 0.00 4.34
2222 6063 1.153823 CACCTTAGGCACCTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
2223 6064 0.108756 GTCACCTTAGGCACCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
2224 6065 0.542232 AGTCACCTTAGGCACCTCGT 60.542 55.000 0.00 0.00 0.00 4.18
2225 6066 0.608640 AAGTCACCTTAGGCACCTCG 59.391 55.000 0.00 0.00 0.00 4.63
2226 6067 2.224548 ACAAAGTCACCTTAGGCACCTC 60.225 50.000 0.00 0.00 0.00 3.85
2227 6068 1.774856 ACAAAGTCACCTTAGGCACCT 59.225 47.619 0.00 0.00 0.00 4.00
2228 6069 2.271944 ACAAAGTCACCTTAGGCACC 57.728 50.000 0.00 0.00 0.00 5.01
2229 6070 4.820173 ACTTTACAAAGTCACCTTAGGCAC 59.180 41.667 0.00 0.00 45.65 5.01
2230 6071 5.043737 ACTTTACAAAGTCACCTTAGGCA 57.956 39.130 0.00 0.00 45.65 4.75
2242 6083 9.694520 CGTCATATCATCTTGAACTTTACAAAG 57.305 33.333 0.13 0.13 41.73 2.77
2243 6084 8.664798 CCGTCATATCATCTTGAACTTTACAAA 58.335 33.333 0.00 0.00 0.00 2.83
2244 6085 7.201609 GCCGTCATATCATCTTGAACTTTACAA 60.202 37.037 0.00 0.00 0.00 2.41
2245 6086 6.257849 GCCGTCATATCATCTTGAACTTTACA 59.742 38.462 0.00 0.00 0.00 2.41
2246 6087 6.480320 AGCCGTCATATCATCTTGAACTTTAC 59.520 38.462 0.00 0.00 0.00 2.01
2247 6088 6.479990 CAGCCGTCATATCATCTTGAACTTTA 59.520 38.462 0.00 0.00 0.00 1.85
2248 6089 5.295292 CAGCCGTCATATCATCTTGAACTTT 59.705 40.000 0.00 0.00 0.00 2.66
2249 6090 4.813161 CAGCCGTCATATCATCTTGAACTT 59.187 41.667 0.00 0.00 0.00 2.66
2250 6091 4.100035 TCAGCCGTCATATCATCTTGAACT 59.900 41.667 0.00 0.00 0.00 3.01
2251 6092 4.371786 TCAGCCGTCATATCATCTTGAAC 58.628 43.478 0.00 0.00 0.00 3.18
2252 6093 4.100035 ACTCAGCCGTCATATCATCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
2253 6094 3.638627 ACTCAGCCGTCATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
2254 6095 3.986572 GACTCAGCCGTCATATCATCTTG 59.013 47.826 0.00 0.00 34.11 3.02
2255 6096 3.894427 AGACTCAGCCGTCATATCATCTT 59.106 43.478 1.91 0.00 36.38 2.40
2256 6097 3.495331 AGACTCAGCCGTCATATCATCT 58.505 45.455 1.91 0.00 36.38 2.90
2257 6098 3.932545 AGACTCAGCCGTCATATCATC 57.067 47.619 1.91 0.00 36.38 2.92
2258 6099 4.679373 AAAGACTCAGCCGTCATATCAT 57.321 40.909 1.91 0.00 36.38 2.45
2259 6100 4.183865 CAAAAGACTCAGCCGTCATATCA 58.816 43.478 1.91 0.00 36.38 2.15
2260 6101 3.557595 CCAAAAGACTCAGCCGTCATATC 59.442 47.826 1.91 0.00 36.38 1.63
2261 6102 3.197766 TCCAAAAGACTCAGCCGTCATAT 59.802 43.478 1.91 0.00 36.38 1.78
2262 6103 2.565391 TCCAAAAGACTCAGCCGTCATA 59.435 45.455 1.91 0.00 36.38 2.15
2263 6104 1.347707 TCCAAAAGACTCAGCCGTCAT 59.652 47.619 1.91 0.00 36.38 3.06
2264 6105 0.756294 TCCAAAAGACTCAGCCGTCA 59.244 50.000 1.91 0.00 36.38 4.35
2265 6106 1.433534 CTCCAAAAGACTCAGCCGTC 58.566 55.000 0.00 0.00 0.00 4.79
2266 6107 0.035458 CCTCCAAAAGACTCAGCCGT 59.965 55.000 0.00 0.00 0.00 5.68
2267 6108 0.035458 ACCTCCAAAAGACTCAGCCG 59.965 55.000 0.00 0.00 0.00 5.52
2268 6109 1.528129 CACCTCCAAAAGACTCAGCC 58.472 55.000 0.00 0.00 0.00 4.85
2269 6110 0.877743 GCACCTCCAAAAGACTCAGC 59.122 55.000 0.00 0.00 0.00 4.26
2270 6111 2.224378 TGAGCACCTCCAAAAGACTCAG 60.224 50.000 0.00 0.00 30.55 3.35
2271 6112 1.768275 TGAGCACCTCCAAAAGACTCA 59.232 47.619 0.00 0.00 31.15 3.41
2272 6113 2.550830 TGAGCACCTCCAAAAGACTC 57.449 50.000 0.00 0.00 0.00 3.36
2273 6114 3.840666 TCTATGAGCACCTCCAAAAGACT 59.159 43.478 0.00 0.00 0.00 3.24
2274 6115 4.187694 CTCTATGAGCACCTCCAAAAGAC 58.812 47.826 0.00 0.00 0.00 3.01
2275 6116 3.198635 CCTCTATGAGCACCTCCAAAAGA 59.801 47.826 0.00 0.00 0.00 2.52
2276 6117 3.054802 ACCTCTATGAGCACCTCCAAAAG 60.055 47.826 0.00 0.00 0.00 2.27
2277 6118 2.912956 ACCTCTATGAGCACCTCCAAAA 59.087 45.455 0.00 0.00 0.00 2.44
2278 6119 2.551270 ACCTCTATGAGCACCTCCAAA 58.449 47.619 0.00 0.00 0.00 3.28
2279 6120 2.254152 ACCTCTATGAGCACCTCCAA 57.746 50.000 0.00 0.00 0.00 3.53
2280 6121 2.424957 CCTACCTCTATGAGCACCTCCA 60.425 54.545 0.00 0.00 0.00 3.86
2281 6122 2.243810 CCTACCTCTATGAGCACCTCC 58.756 57.143 0.00 0.00 0.00 4.30
2282 6123 2.243810 CCCTACCTCTATGAGCACCTC 58.756 57.143 0.00 0.00 0.00 3.85
2283 6124 1.576272 ACCCTACCTCTATGAGCACCT 59.424 52.381 0.00 0.00 0.00 4.00
2284 6125 1.689273 CACCCTACCTCTATGAGCACC 59.311 57.143 0.00 0.00 0.00 5.01
2285 6126 2.101582 CACACCCTACCTCTATGAGCAC 59.898 54.545 0.00 0.00 0.00 4.40
2286 6127 2.292257 ACACACCCTACCTCTATGAGCA 60.292 50.000 0.00 0.00 0.00 4.26
2287 6128 2.101582 CACACACCCTACCTCTATGAGC 59.898 54.545 0.00 0.00 0.00 4.26
2288 6129 3.131223 CACACACACCCTACCTCTATGAG 59.869 52.174 0.00 0.00 0.00 2.90
2289 6130 3.096852 CACACACACCCTACCTCTATGA 58.903 50.000 0.00 0.00 0.00 2.15
2290 6131 2.418746 GCACACACACCCTACCTCTATG 60.419 54.545 0.00 0.00 0.00 2.23
2291 6132 1.831736 GCACACACACCCTACCTCTAT 59.168 52.381 0.00 0.00 0.00 1.98
2292 6133 1.263356 GCACACACACCCTACCTCTA 58.737 55.000 0.00 0.00 0.00 2.43
2293 6134 1.816863 CGCACACACACCCTACCTCT 61.817 60.000 0.00 0.00 0.00 3.69
2294 6135 1.374252 CGCACACACACCCTACCTC 60.374 63.158 0.00 0.00 0.00 3.85
2295 6136 2.741092 CGCACACACACCCTACCT 59.259 61.111 0.00 0.00 0.00 3.08
2296 6137 3.047877 GCGCACACACACCCTACC 61.048 66.667 0.30 0.00 0.00 3.18
2297 6138 3.411351 CGCGCACACACACCCTAC 61.411 66.667 8.75 0.00 0.00 3.18
2304 6145 2.863655 CTATGAACGCGCGCACACAC 62.864 60.000 32.58 16.76 0.00 3.82
2305 6146 2.725699 CTATGAACGCGCGCACACA 61.726 57.895 32.58 25.17 0.00 3.72
2306 6147 2.020016 CTATGAACGCGCGCACAC 59.980 61.111 32.58 20.38 0.00 3.82
2307 6148 3.185365 CCTATGAACGCGCGCACA 61.185 61.111 32.58 28.72 0.00 4.57
2308 6149 3.925238 CCCTATGAACGCGCGCAC 61.925 66.667 32.58 23.88 0.00 5.34
2311 6152 3.261951 CACCCCTATGAACGCGCG 61.262 66.667 30.96 30.96 0.00 6.86
2312 6153 1.883084 CTCACCCCTATGAACGCGC 60.883 63.158 5.73 0.00 0.00 6.86
2313 6154 0.806102 CACTCACCCCTATGAACGCG 60.806 60.000 3.53 3.53 0.00 6.01
2314 6155 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
2315 6156 1.825474 AGACACTCACCCCTATGAACG 59.175 52.381 0.00 0.00 0.00 3.95
2316 6157 2.678190 GCAGACACTCACCCCTATGAAC 60.678 54.545 0.00 0.00 0.00 3.18
2317 6158 1.555075 GCAGACACTCACCCCTATGAA 59.445 52.381 0.00 0.00 0.00 2.57
2318 6159 1.195115 GCAGACACTCACCCCTATGA 58.805 55.000 0.00 0.00 0.00 2.15
2319 6160 0.179100 CGCAGACACTCACCCCTATG 60.179 60.000 0.00 0.00 0.00 2.23
2320 6161 1.961180 GCGCAGACACTCACCCCTAT 61.961 60.000 0.30 0.00 0.00 2.57
2321 6162 2.646175 GCGCAGACACTCACCCCTA 61.646 63.158 0.30 0.00 0.00 3.53
2322 6163 4.008933 GCGCAGACACTCACCCCT 62.009 66.667 0.30 0.00 0.00 4.79
2323 6164 2.238847 TATGCGCAGACACTCACCCC 62.239 60.000 18.32 0.00 0.00 4.95
2324 6165 0.179073 ATATGCGCAGACACTCACCC 60.179 55.000 18.32 0.00 0.00 4.61
2325 6166 2.509052 TATATGCGCAGACACTCACC 57.491 50.000 18.32 0.00 0.00 4.02
2326 6167 5.402398 TCATATATATGCGCAGACACTCAC 58.598 41.667 18.32 0.00 33.76 3.51
2327 6168 5.643379 TCATATATATGCGCAGACACTCA 57.357 39.130 18.32 0.00 33.76 3.41
2328 6169 4.502282 GCTCATATATATGCGCAGACACTC 59.498 45.833 25.66 1.25 42.33 3.51
2329 6170 4.428209 GCTCATATATATGCGCAGACACT 58.572 43.478 25.66 0.00 42.33 3.55
2330 6171 3.241553 CGCTCATATATATGCGCAGACAC 59.758 47.826 28.21 6.97 42.77 3.67
2331 6172 3.438360 CGCTCATATATATGCGCAGACA 58.562 45.455 28.21 0.00 42.77 3.41
2338 6179 2.604914 ACGCAAGCGCTCATATATATGC 59.395 45.455 12.06 13.77 44.19 3.14
2339 6180 4.027050 CAGACGCAAGCGCTCATATATATG 60.027 45.833 12.06 15.47 44.19 1.78
2340 6181 4.108336 CAGACGCAAGCGCTCATATATAT 58.892 43.478 12.06 0.00 44.19 0.86
2341 6182 3.057526 ACAGACGCAAGCGCTCATATATA 60.058 43.478 12.06 0.00 44.19 0.86
2342 6183 2.288457 ACAGACGCAAGCGCTCATATAT 60.288 45.455 12.06 0.00 44.19 0.86
2343 6184 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
2344 6185 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
2345 6186 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
2346 6187 0.179100 ATACAGACGCAAGCGCTCAT 60.179 50.000 12.06 0.00 44.19 2.90
2347 6188 0.389817 AATACAGACGCAAGCGCTCA 60.390 50.000 12.06 3.77 44.19 4.26
2348 6189 0.025513 CAATACAGACGCAAGCGCTC 59.974 55.000 12.06 11.06 44.19 5.03
2349 6190 0.389817 TCAATACAGACGCAAGCGCT 60.390 50.000 15.09 2.64 44.19 5.92
2350 6191 0.652592 ATCAATACAGACGCAAGCGC 59.347 50.000 15.09 0.00 44.19 5.92
2351 6192 1.660607 ACATCAATACAGACGCAAGCG 59.339 47.619 13.50 13.50 46.03 4.68
2352 6193 3.125146 TGAACATCAATACAGACGCAAGC 59.875 43.478 0.00 0.00 45.62 4.01
2353 6194 5.281693 TTGAACATCAATACAGACGCAAG 57.718 39.130 0.00 0.00 35.57 4.01
2354 6195 5.681337 TTTGAACATCAATACAGACGCAA 57.319 34.783 0.00 0.00 36.11 4.85
2355 6196 5.681337 TTTTGAACATCAATACAGACGCA 57.319 34.783 0.00 0.00 36.11 5.24
2379 6220 3.347216 CACCTGATGGTCGAGGATTTTT 58.653 45.455 0.00 0.00 46.60 1.94
2380 6221 2.941415 GCACCTGATGGTCGAGGATTTT 60.941 50.000 0.00 0.00 46.60 1.82
2381 6222 1.407437 GCACCTGATGGTCGAGGATTT 60.407 52.381 0.00 0.00 46.60 2.17
2382 6223 0.179000 GCACCTGATGGTCGAGGATT 59.821 55.000 0.00 0.00 46.60 3.01
2383 6224 1.690219 GGCACCTGATGGTCGAGGAT 61.690 60.000 0.00 0.00 46.60 3.24
2384 6225 2.359169 GGCACCTGATGGTCGAGGA 61.359 63.158 0.00 0.00 46.60 3.71
2385 6226 2.187946 GGCACCTGATGGTCGAGG 59.812 66.667 0.00 0.00 46.60 4.63
2386 6227 2.202797 CGGCACCTGATGGTCGAG 60.203 66.667 0.00 0.00 46.60 4.04
2387 6228 2.579657 AACGGCACCTGATGGTCGA 61.580 57.895 0.00 0.00 46.60 4.20
2388 6229 2.047274 AACGGCACCTGATGGTCG 60.047 61.111 0.00 0.00 46.60 4.79
2389 6230 1.302511 ACAACGGCACCTGATGGTC 60.303 57.895 0.00 0.00 46.60 4.02
2391 6232 0.677731 ATCACAACGGCACCTGATGG 60.678 55.000 0.00 0.00 39.83 3.51
2392 6233 0.729116 GATCACAACGGCACCTGATG 59.271 55.000 0.00 0.00 0.00 3.07
2393 6234 0.392998 GGATCACAACGGCACCTGAT 60.393 55.000 0.00 0.00 0.00 2.90
2394 6235 1.003839 GGATCACAACGGCACCTGA 60.004 57.895 0.00 0.00 0.00 3.86
2395 6236 1.302431 TGGATCACAACGGCACCTG 60.302 57.895 0.00 0.00 0.00 4.00
2396 6237 1.302511 GTGGATCACAACGGCACCT 60.303 57.895 0.00 0.00 34.08 4.00
2397 6238 2.332654 GGTGGATCACAACGGCACC 61.333 63.158 0.00 0.00 35.86 5.01
2401 6242 1.021390 GCTGAGGTGGATCACAACGG 61.021 60.000 0.00 0.59 43.31 4.44
2404 6245 1.340308 CCATGCTGAGGTGGATCACAA 60.340 52.381 0.00 0.00 37.72 3.33
2470 6311 3.564235 TTGTATAGCGCGTATACCAGG 57.436 47.619 23.63 0.00 42.10 4.45
2513 6354 9.590451 GCCATATACTAGTACTGTTTTTACACA 57.410 33.333 4.31 0.00 0.00 3.72
2588 6429 5.877564 TCAACAGACAACATTAAGACACACA 59.122 36.000 0.00 0.00 0.00 3.72
2618 6482 7.973944 AGGTTCTTGTTTTGCTTTAAGTGTAAG 59.026 33.333 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.