Multiple sequence alignment - TraesCS5A01G367600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G367600 chr5A 100.000 4971 0 0 1 4971 567910486 567915456 0.000000e+00 9180
1 TraesCS5A01G367600 chr5A 85.652 1596 153 50 3403 4971 567990092 567991638 0.000000e+00 1609
2 TraesCS5A01G367600 chr5A 89.373 941 68 13 2494 3413 567964131 567965060 0.000000e+00 1155
3 TraesCS5A01G367600 chr5A 82.246 552 60 22 1487 2003 567963067 567963615 4.570000e-120 442
4 TraesCS5A01G367600 chr5A 84.367 403 49 9 2112 2505 567963710 567964107 2.810000e-102 383
5 TraesCS5A01G367600 chr5D 94.220 4533 135 46 504 4971 449024981 449029451 0.000000e+00 6802
6 TraesCS5A01G367600 chr5B 90.042 3535 184 72 938 4335 548998016 548994513 0.000000e+00 4423
7 TraesCS5A01G367600 chr3A 96.844 507 14 2 1 506 682982201 682981696 0.000000e+00 846
8 TraesCS5A01G367600 chr3A 96.640 506 17 0 1 506 653977506 653978011 0.000000e+00 841
9 TraesCS5A01G367600 chrUn 100.000 421 0 0 2628 3048 476814555 476814135 0.000000e+00 778
10 TraesCS5A01G367600 chr2A 97.567 411 9 1 1 410 191996387 191995977 0.000000e+00 702
11 TraesCS5A01G367600 chr4B 92.075 429 29 4 1 427 624406173 624405748 2.560000e-167 599
12 TraesCS5A01G367600 chr6A 89.744 78 6 1 4894 4971 454943522 454943597 1.140000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G367600 chr5A 567910486 567915456 4970 False 9180 9180 100.000000 1 4971 1 chr5A.!!$F1 4970
1 TraesCS5A01G367600 chr5A 567990092 567991638 1546 False 1609 1609 85.652000 3403 4971 1 chr5A.!!$F2 1568
2 TraesCS5A01G367600 chr5A 567963067 567965060 1993 False 660 1155 85.328667 1487 3413 3 chr5A.!!$F3 1926
3 TraesCS5A01G367600 chr5D 449024981 449029451 4470 False 6802 6802 94.220000 504 4971 1 chr5D.!!$F1 4467
4 TraesCS5A01G367600 chr5B 548994513 548998016 3503 True 4423 4423 90.042000 938 4335 1 chr5B.!!$R1 3397
5 TraesCS5A01G367600 chr3A 682981696 682982201 505 True 846 846 96.844000 1 506 1 chr3A.!!$R1 505
6 TraesCS5A01G367600 chr3A 653977506 653978011 505 False 841 841 96.640000 1 506 1 chr3A.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 1.304282 GACTGCCACATGGACCCAT 59.696 57.895 0.87 0.00 37.39 4.00 F
1087 1113 0.183731 TCGCTCATGGGCTCTAGAGA 59.816 55.000 24.24 0.61 0.00 3.10 F
1522 1583 1.131126 CTGTTGGCTTACTGAATGGCG 59.869 52.381 0.00 0.00 0.00 5.69 F
2012 2105 0.999406 ATACTTGCACGTGATCGCAC 59.001 50.000 22.23 0.00 38.00 5.34 F
3478 3669 2.027192 GGTTGCAGGGAGAACATGTCTA 60.027 50.000 0.00 0.00 36.41 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1261 0.179142 GAAACCGAGCTCCTACGACC 60.179 60.000 8.47 0.0 0.00 4.79 R
2012 2105 2.223479 GCAAGTAATACAACCGGCATGG 60.223 50.000 0.00 0.0 46.41 3.66 R
3478 3669 4.526970 TGCTCAACAAGAAGAGAAAAGGT 58.473 39.130 0.00 0.0 33.74 3.50 R
3852 4061 2.382882 ACTTAGTAAGCCGAGGGGTAC 58.617 52.381 9.92 0.0 34.97 3.34 R
4942 5225 0.459237 CAACCAAACGCTTGCCACAA 60.459 50.000 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 165 3.325135 GTCTTGAAGAGGAAGAGACCCAA 59.675 47.826 0.00 0.00 32.58 4.12
310 311 1.304282 GACTGCCACATGGACCCAT 59.696 57.895 0.87 0.00 37.39 4.00
347 348 4.202295 CCATTTGTCATCAGCTCTAGCCTA 60.202 45.833 0.00 0.00 43.38 3.93
355 356 1.685517 CAGCTCTAGCCTAGTCATGCA 59.314 52.381 0.00 0.00 43.38 3.96
365 366 3.736433 GCCTAGTCATGCAGTGTACAGAG 60.736 52.174 0.00 0.00 0.00 3.35
370 371 2.632512 TCATGCAGTGTACAGAGGAACA 59.367 45.455 0.00 0.00 0.00 3.18
500 502 6.402550 CGGGTTGCATAGAGTGATTTATATGC 60.403 42.308 8.67 8.67 46.81 3.14
520 522 2.422597 CTCAATAAGTGACCGCAACCA 58.577 47.619 0.00 0.00 31.13 3.67
540 542 2.200337 GCTTCGGGGTGCTGGTTTT 61.200 57.895 0.00 0.00 0.00 2.43
541 543 1.744320 GCTTCGGGGTGCTGGTTTTT 61.744 55.000 0.00 0.00 0.00 1.94
574 578 6.834168 TTTTCTCAGTTGTTGGTTTTCTCT 57.166 33.333 0.00 0.00 0.00 3.10
575 579 6.834168 TTTCTCAGTTGTTGGTTTTCTCTT 57.166 33.333 0.00 0.00 0.00 2.85
576 580 6.834168 TTCTCAGTTGTTGGTTTTCTCTTT 57.166 33.333 0.00 0.00 0.00 2.52
577 581 6.834168 TCTCAGTTGTTGGTTTTCTCTTTT 57.166 33.333 0.00 0.00 0.00 2.27
578 582 7.227049 TCTCAGTTGTTGGTTTTCTCTTTTT 57.773 32.000 0.00 0.00 0.00 1.94
579 583 7.312899 TCTCAGTTGTTGGTTTTCTCTTTTTC 58.687 34.615 0.00 0.00 0.00 2.29
679 690 5.104941 TGGGATCTAATTTTGAAGAGCTCGA 60.105 40.000 8.37 0.00 31.11 4.04
695 706 5.678964 GAGCTCGACATGAGATGCAGTTTT 61.679 45.833 0.00 0.00 45.13 2.43
702 713 6.803320 CGACATGAGATGCAGTTTTAAAATGT 59.197 34.615 3.52 0.30 0.00 2.71
703 714 7.326789 CGACATGAGATGCAGTTTTAAAATGTT 59.673 33.333 3.52 0.00 0.00 2.71
704 715 8.524870 ACATGAGATGCAGTTTTAAAATGTTC 57.475 30.769 3.52 4.93 0.00 3.18
705 716 8.143193 ACATGAGATGCAGTTTTAAAATGTTCA 58.857 29.630 3.52 6.62 0.00 3.18
706 717 8.980610 CATGAGATGCAGTTTTAAAATGTTCAA 58.019 29.630 3.52 0.00 0.00 2.69
707 718 9.715121 ATGAGATGCAGTTTTAAAATGTTCAAT 57.285 25.926 3.52 0.00 0.00 2.57
708 719 9.545105 TGAGATGCAGTTTTAAAATGTTCAATT 57.455 25.926 3.52 0.00 0.00 2.32
916 929 7.953005 TCAGGAAATTAAATATGCTGACCAA 57.047 32.000 5.88 0.00 36.74 3.67
917 930 7.999679 TCAGGAAATTAAATATGCTGACCAAG 58.000 34.615 5.88 0.00 36.74 3.61
919 932 6.897413 AGGAAATTAAATATGCTGACCAAGGT 59.103 34.615 0.00 0.00 0.00 3.50
921 934 8.352942 GGAAATTAAATATGCTGACCAAGGTAG 58.647 37.037 0.00 0.00 0.00 3.18
923 936 9.474313 AAATTAAATATGCTGACCAAGGTAGAA 57.526 29.630 0.00 0.00 0.00 2.10
924 937 9.646522 AATTAAATATGCTGACCAAGGTAGAAT 57.353 29.630 0.00 0.00 0.00 2.40
925 938 9.646522 ATTAAATATGCTGACCAAGGTAGAATT 57.353 29.630 0.00 0.00 0.00 2.17
926 939 7.961326 AAATATGCTGACCAAGGTAGAATTT 57.039 32.000 0.00 0.00 0.00 1.82
927 940 7.961326 AATATGCTGACCAAGGTAGAATTTT 57.039 32.000 0.00 0.00 0.00 1.82
929 942 4.469657 TGCTGACCAAGGTAGAATTTTGT 58.530 39.130 0.00 0.00 0.00 2.83
934 947 7.042725 GCTGACCAAGGTAGAATTTTGTTTTTC 60.043 37.037 0.00 0.00 0.00 2.29
1020 1044 4.762289 AATGGAACCGCTCTCTATCTTT 57.238 40.909 0.00 0.00 0.00 2.52
1023 1047 3.513912 TGGAACCGCTCTCTATCTTTGAA 59.486 43.478 0.00 0.00 0.00 2.69
1030 1054 4.356289 GCTCTCTATCTTTGAACCGAGTC 58.644 47.826 0.00 0.00 0.00 3.36
1037 1063 3.374745 TCTTTGAACCGAGTCGTTACAC 58.625 45.455 12.31 0.00 0.00 2.90
1041 1067 0.662374 AACCGAGTCGTTACACTGCG 60.662 55.000 12.31 0.00 0.00 5.18
1085 1111 1.109920 GGTCGCTCATGGGCTCTAGA 61.110 60.000 17.16 1.87 0.00 2.43
1087 1113 0.183731 TCGCTCATGGGCTCTAGAGA 59.816 55.000 24.24 0.61 0.00 3.10
1100 1126 3.189702 GCTCTAGAGACCTTAGGTATGCG 59.810 52.174 24.24 0.00 35.25 4.73
1101 1127 4.643463 CTCTAGAGACCTTAGGTATGCGA 58.357 47.826 15.05 0.00 35.25 5.10
1111 1157 2.277949 GTATGCGAGCGCGTCAGA 60.278 61.111 13.32 4.61 45.51 3.27
1114 1160 1.208642 TATGCGAGCGCGTCAGAATG 61.209 55.000 13.32 0.00 45.51 2.67
1146 1192 2.681778 CAGTCGCCACCTCCTCCT 60.682 66.667 0.00 0.00 0.00 3.69
1207 1256 1.391157 CCTCCTCTTCTCCTCTGCCG 61.391 65.000 0.00 0.00 0.00 5.69
1212 1261 3.423162 CTTCTCCTCTGCCGCCGAG 62.423 68.421 4.89 4.89 0.00 4.63
1242 1291 3.342627 CGGTTTCGCGTTCTGCCA 61.343 61.111 5.77 0.00 42.08 4.92
1244 1293 2.539338 GGTTTCGCGTTCTGCCACA 61.539 57.895 5.77 0.00 42.08 4.17
1246 1295 1.522806 TTTCGCGTTCTGCCACACT 60.523 52.632 5.77 0.00 42.08 3.55
1274 1323 2.864114 CCATCCTGGTCTTGCACAG 58.136 57.895 0.00 0.00 31.35 3.66
1412 1462 3.869272 CGTGCCCGCAGCTTCATC 61.869 66.667 0.00 0.00 44.23 2.92
1413 1463 2.747460 GTGCCCGCAGCTTCATCA 60.747 61.111 0.00 0.00 44.23 3.07
1475 1525 5.013079 TCAGTTTCTCCCAGAAATGCTTCTA 59.987 40.000 2.14 0.00 44.94 2.10
1476 1526 5.353678 CAGTTTCTCCCAGAAATGCTTCTAG 59.646 44.000 2.14 0.00 44.94 2.43
1477 1527 5.249393 AGTTTCTCCCAGAAATGCTTCTAGA 59.751 40.000 2.14 0.00 44.94 2.43
1479 1529 4.614475 TCTCCCAGAAATGCTTCTAGAGA 58.386 43.478 10.95 10.95 42.45 3.10
1480 1530 5.215069 TCTCCCAGAAATGCTTCTAGAGAT 58.785 41.667 10.95 0.00 41.19 2.75
1481 1531 5.070180 TCTCCCAGAAATGCTTCTAGAGATG 59.930 44.000 10.95 0.00 41.19 2.90
1483 1533 4.815308 CCCAGAAATGCTTCTAGAGATGTG 59.185 45.833 0.00 0.00 40.05 3.21
1484 1534 5.426504 CCAGAAATGCTTCTAGAGATGTGT 58.573 41.667 0.00 0.00 40.05 3.72
1485 1535 5.293814 CCAGAAATGCTTCTAGAGATGTGTG 59.706 44.000 0.00 0.00 40.05 3.82
1486 1536 5.293814 CAGAAATGCTTCTAGAGATGTGTGG 59.706 44.000 0.00 0.00 40.05 4.17
1487 1537 4.833478 AATGCTTCTAGAGATGTGTGGT 57.167 40.909 0.00 0.00 0.00 4.16
1488 1538 3.599730 TGCTTCTAGAGATGTGTGGTG 57.400 47.619 0.00 0.00 0.00 4.17
1489 1539 2.899900 TGCTTCTAGAGATGTGTGGTGT 59.100 45.455 0.00 0.00 0.00 4.16
1490 1540 3.257393 GCTTCTAGAGATGTGTGGTGTG 58.743 50.000 0.00 0.00 0.00 3.82
1491 1541 3.306364 GCTTCTAGAGATGTGTGGTGTGT 60.306 47.826 0.00 0.00 0.00 3.72
1512 1573 4.471747 TGTATGTATGACCCTGTTGGCTTA 59.528 41.667 0.00 0.00 37.83 3.09
1522 1583 1.131126 CTGTTGGCTTACTGAATGGCG 59.869 52.381 0.00 0.00 0.00 5.69
1537 1598 1.375908 GGCGTGAACCAGATGCTGA 60.376 57.895 0.00 0.00 32.44 4.26
1667 1740 1.457346 CTGTGATTGGCAAGGAGGTC 58.543 55.000 5.96 0.00 0.00 3.85
1733 1806 4.368003 TCCACCAGGATCGGGTAC 57.632 61.111 7.31 0.00 39.61 3.34
2012 2105 0.999406 ATACTTGCACGTGATCGCAC 59.001 50.000 22.23 0.00 38.00 5.34
2056 2149 6.043127 TGCACATGATATGGTGTACTAGGAAT 59.957 38.462 0.00 0.00 37.35 3.01
2068 2161 6.604795 GGTGTACTAGGAATACTAACTGTGGA 59.395 42.308 0.00 0.00 0.00 4.02
3478 3669 2.027192 GGTTGCAGGGAGAACATGTCTA 60.027 50.000 0.00 0.00 36.41 2.59
3852 4061 1.939934 TCAGCTTGTGTTCCTCGTTTG 59.060 47.619 0.00 0.00 0.00 2.93
4479 4749 4.739716 CACAGTGCAATTCTTGTACAAACC 59.260 41.667 10.03 0.00 46.85 3.27
4575 4845 8.474831 TGTAGATATTCACACTGCTTTAGCTTA 58.525 33.333 0.00 0.00 42.66 3.09
4669 4939 7.029563 GTCTGTTTTGACTTGAACTCATGTTT 58.970 34.615 0.00 0.00 34.86 2.83
4846 5128 5.406175 GCTATTTGATTTTGTGAAGCTGCAA 59.594 36.000 0.00 0.00 0.00 4.08
4887 5170 5.689383 AGTGCAACAAACTATCGTTGAAT 57.311 34.783 6.46 0.00 44.20 2.57
4921 5204 2.684881 GTCTGGTTGGCATCCATAGTTG 59.315 50.000 17.24 6.15 34.26 3.16
4942 5225 2.497273 GGCCACACTTTTCTGCCATAAT 59.503 45.455 0.00 0.00 41.76 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 165 1.270907 CCTGCTTCTGTCTACCCAGT 58.729 55.000 0.00 0.00 34.02 4.00
347 348 2.529632 TCCTCTGTACACTGCATGACT 58.470 47.619 0.00 0.00 0.00 3.41
355 356 2.434336 TGCACTTGTTCCTCTGTACACT 59.566 45.455 0.00 0.00 0.00 3.55
365 366 0.951558 AACATCCGTGCACTTGTTCC 59.048 50.000 16.19 0.00 0.00 3.62
370 371 1.877443 GTGGTAAACATCCGTGCACTT 59.123 47.619 16.19 3.53 0.00 3.16
500 502 2.422597 TGGTTGCGGTCACTTATTGAG 58.577 47.619 0.00 0.00 33.71 3.02
520 522 2.713531 AAACCAGCACCCCGAAGCAT 62.714 55.000 0.00 0.00 0.00 3.79
553 557 6.834168 AAAGAGAAAACCAACAACTGAGAA 57.166 33.333 0.00 0.00 0.00 2.87
555 559 7.315890 AGAAAAAGAGAAAACCAACAACTGAG 58.684 34.615 0.00 0.00 0.00 3.35
565 569 9.741168 CGAAAAGAAAAAGAAAAAGAGAAAACC 57.259 29.630 0.00 0.00 0.00 3.27
653 664 6.931281 CGAGCTCTTCAAAATTAGATCCCATA 59.069 38.462 12.85 0.00 0.00 2.74
676 687 6.552859 TTTTAAAACTGCATCTCATGTCGA 57.447 33.333 0.00 0.00 0.00 4.20
679 690 8.143193 TGAACATTTTAAAACTGCATCTCATGT 58.857 29.630 1.97 0.00 0.00 3.21
738 749 8.477419 TGATCACTTTCTAAAAACCCAGAAAT 57.523 30.769 0.00 0.00 39.40 2.17
896 909 9.120538 TCTACCTTGGTCAGCATATTTAATTTC 57.879 33.333 0.00 0.00 0.00 2.17
909 922 8.197439 AGAAAAACAAAATTCTACCTTGGTCAG 58.803 33.333 0.00 0.00 34.24 3.51
987 1009 6.208599 AGAGCGGTTCCATTTTCTTTTCAATA 59.791 34.615 0.00 0.00 0.00 1.90
990 1012 3.888930 AGAGCGGTTCCATTTTCTTTTCA 59.111 39.130 0.00 0.00 0.00 2.69
994 1016 3.425162 AGAGAGCGGTTCCATTTTCTT 57.575 42.857 0.00 0.00 0.00 2.52
995 1017 4.407296 AGATAGAGAGCGGTTCCATTTTCT 59.593 41.667 0.00 0.00 0.00 2.52
996 1018 4.698575 AGATAGAGAGCGGTTCCATTTTC 58.301 43.478 0.00 0.00 0.00 2.29
1020 1044 1.601162 GCAGTGTAACGACTCGGTTCA 60.601 52.381 2.98 0.00 45.86 3.18
1023 1047 1.081641 CGCAGTGTAACGACTCGGT 60.082 57.895 2.98 0.00 45.86 4.69
1030 1054 2.152699 CCGCTCTCGCAGTGTAACG 61.153 63.158 0.00 0.00 45.86 3.18
1037 1063 2.587194 CCCATTCCGCTCTCGCAG 60.587 66.667 0.00 0.00 35.30 5.18
1041 1067 4.918201 CCCGCCCATTCCGCTCTC 62.918 72.222 0.00 0.00 0.00 3.20
1085 1111 0.669077 CGCTCGCATACCTAAGGTCT 59.331 55.000 0.00 0.00 37.09 3.85
1087 1113 1.067582 GCGCTCGCATACCTAAGGT 59.932 57.895 9.59 0.00 41.49 3.50
1090 1116 1.298863 GACGCGCTCGCATACCTAA 60.299 57.895 5.73 0.00 42.06 2.69
1092 1118 3.758088 CTGACGCGCTCGCATACCT 62.758 63.158 5.73 0.00 42.06 3.08
1093 1119 3.323136 CTGACGCGCTCGCATACC 61.323 66.667 5.73 0.87 42.06 2.73
1095 1121 1.065764 ATTCTGACGCGCTCGCATA 59.934 52.632 5.73 0.00 42.06 3.14
1096 1122 2.202797 ATTCTGACGCGCTCGCAT 60.203 55.556 5.73 0.00 42.06 4.73
1097 1123 3.181290 CATTCTGACGCGCTCGCA 61.181 61.111 5.73 0.00 42.06 5.10
1100 1126 1.424493 CTTCCCATTCTGACGCGCTC 61.424 60.000 5.73 3.58 0.00 5.03
1101 1127 1.448540 CTTCCCATTCTGACGCGCT 60.449 57.895 5.73 0.00 0.00 5.92
1161 1207 2.671276 TGGCGGAAAATGCAGCGA 60.671 55.556 0.00 0.00 0.00 4.93
1190 1239 2.055042 GCGGCAGAGGAGAAGAGGA 61.055 63.158 0.00 0.00 0.00 3.71
1195 1244 3.452786 CTCGGCGGCAGAGGAGAA 61.453 66.667 20.42 0.00 32.38 2.87
1207 1256 2.829458 AGCTCCTACGACCTCGGC 60.829 66.667 0.00 0.00 44.95 5.54
1212 1261 0.179142 GAAACCGAGCTCCTACGACC 60.179 60.000 8.47 0.00 0.00 4.79
1228 1277 1.522806 AGTGTGGCAGAACGCGAAA 60.523 52.632 15.93 0.00 43.84 3.46
1242 1291 1.143684 AGGATGGTGAACTTGCAGTGT 59.856 47.619 0.00 0.00 0.00 3.55
1244 1293 1.901591 CAGGATGGTGAACTTGCAGT 58.098 50.000 0.00 0.00 0.00 4.40
1290 1339 3.012518 CAGTAATCCCCTCTTGCTGTTG 58.987 50.000 0.00 0.00 33.34 3.33
1404 1454 4.642429 GGTTATTACCGGATGATGAAGCT 58.358 43.478 9.46 0.00 34.01 3.74
1436 1486 0.687354 ACTGAACCAAGCGTCTGGAT 59.313 50.000 11.35 0.00 38.96 3.41
1475 1525 5.422012 TCATACATACACACCACACATCTCT 59.578 40.000 0.00 0.00 0.00 3.10
1476 1526 5.520288 GTCATACATACACACCACACATCTC 59.480 44.000 0.00 0.00 0.00 2.75
1477 1527 5.419542 GTCATACATACACACCACACATCT 58.580 41.667 0.00 0.00 0.00 2.90
1479 1529 4.513442 GGTCATACATACACACCACACAT 58.487 43.478 0.00 0.00 0.00 3.21
1480 1530 3.307129 GGGTCATACATACACACCACACA 60.307 47.826 0.00 0.00 0.00 3.72
1481 1531 3.055385 AGGGTCATACATACACACCACAC 60.055 47.826 0.00 0.00 0.00 3.82
1483 1533 3.055385 ACAGGGTCATACATACACACCAC 60.055 47.826 0.00 0.00 0.00 4.16
1484 1534 3.178046 ACAGGGTCATACATACACACCA 58.822 45.455 0.00 0.00 0.00 4.17
1485 1535 3.906720 ACAGGGTCATACATACACACC 57.093 47.619 0.00 0.00 0.00 4.16
1486 1536 3.938963 CCAACAGGGTCATACATACACAC 59.061 47.826 0.00 0.00 0.00 3.82
1487 1537 3.621214 GCCAACAGGGTCATACATACACA 60.621 47.826 0.00 0.00 39.65 3.72
1488 1538 2.943033 GCCAACAGGGTCATACATACAC 59.057 50.000 0.00 0.00 39.65 2.90
1489 1539 2.843730 AGCCAACAGGGTCATACATACA 59.156 45.455 0.00 0.00 39.65 2.29
1490 1540 3.560636 AGCCAACAGGGTCATACATAC 57.439 47.619 0.00 0.00 39.65 2.39
1491 1541 4.719773 AGTAAGCCAACAGGGTCATACATA 59.280 41.667 0.00 0.00 39.65 2.29
1512 1573 0.396435 TCTGGTTCACGCCATTCAGT 59.604 50.000 0.00 0.00 37.96 3.41
1522 1583 1.354040 CGTCTCAGCATCTGGTTCAC 58.646 55.000 0.00 0.00 31.51 3.18
1667 1740 4.112341 GTCCCAGACCCGACGACG 62.112 72.222 0.00 0.00 39.43 5.12
2012 2105 2.223479 GCAAGTAATACAACCGGCATGG 60.223 50.000 0.00 0.00 46.41 3.66
2056 2149 4.799586 GCTCACAAGCTTCCACAGTTAGTA 60.800 45.833 0.00 0.00 45.55 1.82
2150 2270 9.230122 AGCAGAAAAAGAAAGGAAATTCAAAAA 57.770 25.926 0.00 0.00 0.00 1.94
2496 2660 5.620206 TCTTCCATGTCACATTGTAACAGT 58.380 37.500 0.00 0.00 0.00 3.55
3478 3669 4.526970 TGCTCAACAAGAAGAGAAAAGGT 58.473 39.130 0.00 0.00 33.74 3.50
3852 4061 2.382882 ACTTAGTAAGCCGAGGGGTAC 58.617 52.381 9.92 0.00 34.97 3.34
4130 4369 9.239002 CAGCACTATGACAGTCTTTAATAGTAC 57.761 37.037 9.78 6.12 34.26 2.73
4282 4531 7.596248 CCAAAATCAAATAACTTCTCCACACTG 59.404 37.037 0.00 0.00 0.00 3.66
4479 4749 7.584847 GTGATTGTCATGCAAGAACAAATTTTG 59.415 33.333 13.66 7.59 40.86 2.44
4575 4845 3.107601 TCTCGGGAACTCAAAGATGGAT 58.892 45.455 0.00 0.00 0.00 3.41
4669 4939 6.587206 TTTGTAGAAATGTGATGCATTGGA 57.413 33.333 0.00 0.00 46.29 3.53
4887 5170 4.277476 CCAACCAGACATGCCCTAAATAA 58.723 43.478 0.00 0.00 0.00 1.40
4921 5204 1.544724 TATGGCAGAAAAGTGTGGCC 58.455 50.000 0.00 0.00 42.42 5.36
4942 5225 0.459237 CAACCAAACGCTTGCCACAA 60.459 50.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.