Multiple sequence alignment - TraesCS5A01G367500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G367500 chr5A 100.000 4900 0 0 1 4900 567911813 567906914 0.000000e+00 9049.0
1 TraesCS5A01G367500 chr5A 88.298 94 9 2 1884 1975 567909855 567909762 1.440000e-20 111.0
2 TraesCS5A01G367500 chr5A 88.298 94 9 2 1959 2052 567909930 567909839 1.440000e-20 111.0
3 TraesCS5A01G367500 chr2A 98.721 3988 45 3 919 4900 191995977 191999964 0.000000e+00 7077.0
4 TraesCS5A01G367500 chr2A 81.635 844 109 20 2312 3131 733178290 733177469 0.000000e+00 658.0
5 TraesCS5A01G367500 chr2A 88.298 94 9 2 1959 2052 191996943 191997034 1.440000e-20 111.0
6 TraesCS5A01G367500 chr2A 88.298 94 9 2 1884 1975 191997018 191997111 1.440000e-20 111.0
7 TraesCS5A01G367500 chr2A 100.000 28 0 0 4517 4544 126104336 126104309 9.000000e-03 52.8
8 TraesCS5A01G367500 chr3A 97.148 3331 51 8 1570 4900 653977226 653973940 0.000000e+00 5585.0
9 TraesCS5A01G367500 chr3A 96.640 1012 13 3 1570 2577 682982481 682983475 0.000000e+00 1661.0
10 TraesCS5A01G367500 chr3A 97.450 745 19 0 823 1567 653978011 653977267 0.000000e+00 1271.0
11 TraesCS5A01G367500 chr3A 96.783 746 22 2 823 1567 682981696 682982440 0.000000e+00 1243.0
12 TraesCS5A01G367500 chr3A 97.049 610 16 1 4291 4900 682983470 682984077 0.000000e+00 1026.0
13 TraesCS5A01G367500 chr3A 88.298 94 9 2 1884 1975 653976871 653976778 1.440000e-20 111.0
14 TraesCS5A01G367500 chr3A 90.123 81 7 1 1959 2039 682982778 682982857 2.410000e-18 104.0
15 TraesCS5A01G367500 chr4B 95.697 1441 42 5 3464 4900 624408513 624409937 0.000000e+00 2300.0
16 TraesCS5A01G367500 chr4B 95.904 1123 43 3 2318 3439 624407398 624408518 0.000000e+00 1816.0
17 TraesCS5A01G367500 chr4B 93.597 531 18 3 1739 2266 624406880 624407397 0.000000e+00 778.0
18 TraesCS5A01G367500 chr4B 92.629 502 32 4 902 1401 624405748 624406246 0.000000e+00 717.0
19 TraesCS5A01G367500 chr4B 84.814 349 47 3 3083 3426 460590937 460590590 3.630000e-91 346.0
20 TraesCS5A01G367500 chr4B 97.619 168 4 0 1396 1563 624406689 624406856 6.210000e-74 289.0
21 TraesCS5A01G367500 chr4B 89.873 79 7 1 1959 2037 624407028 624407105 3.120000e-17 100.0
22 TraesCS5A01G367500 chr5D 84.719 818 67 23 39 825 449025771 449024981 0.000000e+00 765.0
23 TraesCS5A01G367500 chrUn 100.000 411 0 0 3684 4094 477635079 477634669 0.000000e+00 760.0
24 TraesCS5A01G367500 chrUn 85.131 343 44 4 3083 3420 480659853 480660193 1.310000e-90 344.0
25 TraesCS5A01G367500 chr2D 82.075 848 103 25 2312 3131 598938205 598937379 0.000000e+00 678.0
26 TraesCS5A01G367500 chr7D 87.885 454 47 7 2312 2764 82622692 82622246 1.210000e-145 527.0
27 TraesCS5A01G367500 chr7D 81.604 636 74 19 2474 3085 594011013 594011629 2.050000e-133 486.0
28 TraesCS5A01G367500 chr7D 77.931 580 90 19 2850 3398 82622250 82621678 1.320000e-85 327.0
29 TraesCS5A01G367500 chr1B 87.465 359 40 5 2319 2675 132290457 132290812 4.570000e-110 409.0
30 TraesCS5A01G367500 chr7B 85.673 349 44 3 3083 3426 709480244 709479897 3.610000e-96 363.0
31 TraesCS5A01G367500 chr6D 84.409 372 46 7 3615 3977 168294698 168295066 6.030000e-94 355.0
32 TraesCS5A01G367500 chr6D 87.222 180 21 2 3479 3657 168294507 168294685 2.310000e-48 204.0
33 TraesCS5A01G367500 chr6B 85.100 349 46 3 3083 3426 529172089 529171742 7.800000e-93 351.0
34 TraesCS5A01G367500 chr3B 84.814 349 46 4 3083 3426 794009230 794008884 1.310000e-90 344.0
35 TraesCS5A01G367500 chr3B 87.291 299 31 5 3792 4087 590937190 590936896 7.860000e-88 335.0
36 TraesCS5A01G367500 chr3B 80.429 373 35 21 3615 3977 22231857 22232201 2.930000e-62 250.0
37 TraesCS5A01G367500 chr5B 81.412 425 38 20 1 391 548997599 548998016 4.760000e-80 309.0
38 TraesCS5A01G367500 chr1D 84.173 139 21 1 3449 3586 491931199 491931061 3.080000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G367500 chr5A 567906914 567911813 4899 True 3090.333333 9049 92.198667 1 4900 3 chr5A.!!$R1 4899
1 TraesCS5A01G367500 chr2A 191995977 191999964 3987 False 2433.000000 7077 91.772333 919 4900 3 chr2A.!!$F1 3981
2 TraesCS5A01G367500 chr2A 733177469 733178290 821 True 658.000000 658 81.635000 2312 3131 1 chr2A.!!$R2 819
3 TraesCS5A01G367500 chr3A 653973940 653978011 4071 True 2322.333333 5585 94.298667 823 4900 3 chr3A.!!$R1 4077
4 TraesCS5A01G367500 chr3A 682981696 682984077 2381 False 1008.500000 1661 95.148750 823 4900 4 chr3A.!!$F1 4077
5 TraesCS5A01G367500 chr4B 624405748 624409937 4189 False 1000.000000 2300 94.219833 902 4900 6 chr4B.!!$F1 3998
6 TraesCS5A01G367500 chr5D 449024981 449025771 790 True 765.000000 765 84.719000 39 825 1 chr5D.!!$R1 786
7 TraesCS5A01G367500 chr2D 598937379 598938205 826 True 678.000000 678 82.075000 2312 3131 1 chr2D.!!$R1 819
8 TraesCS5A01G367500 chr7D 594011013 594011629 616 False 486.000000 486 81.604000 2474 3085 1 chr7D.!!$F1 611
9 TraesCS5A01G367500 chr7D 82621678 82622692 1014 True 427.000000 527 82.908000 2312 3398 2 chr7D.!!$R1 1086
10 TraesCS5A01G367500 chr6D 168294507 168295066 559 False 279.500000 355 85.815500 3479 3977 2 chr6D.!!$F1 498


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.109689 GCTCTCGCAGTGTAACGACT 60.110 55.000 0.00 0.0 45.86 4.18 F
302 303 0.165295 TCTCGCAGTGTAACGACTCG 59.835 55.000 0.00 0.0 45.86 4.18 F
305 306 0.662374 CGCAGTGTAACGACTCGGTT 60.662 55.000 2.98 0.0 45.86 4.44 F
654 655 0.822811 ACTGCATCTCATGTCGAGCT 59.177 50.000 0.00 0.0 41.98 4.09 F
962 964 0.951558 AACATCCGTGCACTTGTTCC 59.048 50.000 16.19 0.0 0.00 3.62 F
2425 2986 2.108952 AGCTGAGGGGAAGATTTTGTGT 59.891 45.455 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 1396 1.204941 CAGGCGCTGTAACTCCTAAGT 59.795 52.381 7.64 0.00 37.32 2.24 R
2386 2947 2.061028 GCTTGCTTGGATTTTTGTCGG 58.939 47.619 0.00 0.00 0.00 4.79 R
3079 3695 7.151308 CACAAAAGTGGGCATACAGAAAATAA 58.849 34.615 0.00 0.00 0.00 1.40 R
3313 3932 3.382546 GCCACATGCCTTCAATAAGACAT 59.617 43.478 0.00 0.00 36.36 3.06 R
3483 4107 9.378551 TCATTTGGCTGTATAGTTTACTTACAG 57.621 33.333 17.99 17.99 43.58 2.74 R
4756 5611 0.179029 AAGGGTGGGAACGTCAACAG 60.179 55.000 0.00 0.00 0.00 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.283145 ATGGCTGCCATCAGTAATCC 57.717 50.000 27.95 0.00 40.74 3.01
25 26 0.183492 TGGCTGCCATCAGTAATCCC 59.817 55.000 19.30 0.00 42.29 3.85
26 27 0.538287 GGCTGCCATCAGTAATCCCC 60.538 60.000 15.17 0.00 42.29 4.81
27 28 0.475906 GCTGCCATCAGTAATCCCCT 59.524 55.000 0.00 0.00 42.29 4.79
28 29 1.544314 GCTGCCATCAGTAATCCCCTC 60.544 57.143 0.00 0.00 42.29 4.30
29 30 2.053244 CTGCCATCAGTAATCCCCTCT 58.947 52.381 0.00 0.00 35.61 3.69
30 31 2.441001 CTGCCATCAGTAATCCCCTCTT 59.559 50.000 0.00 0.00 35.61 2.85
31 32 2.173356 TGCCATCAGTAATCCCCTCTTG 59.827 50.000 0.00 0.00 0.00 3.02
32 33 2.856222 CCATCAGTAATCCCCTCTTGC 58.144 52.381 0.00 0.00 0.00 4.01
33 34 2.441001 CCATCAGTAATCCCCTCTTGCT 59.559 50.000 0.00 0.00 0.00 3.91
34 35 3.474600 CATCAGTAATCCCCTCTTGCTG 58.525 50.000 0.00 0.00 37.58 4.41
35 36 2.551270 TCAGTAATCCCCTCTTGCTGT 58.449 47.619 0.00 0.00 37.52 4.40
36 37 2.912956 TCAGTAATCCCCTCTTGCTGTT 59.087 45.455 0.00 0.00 37.52 3.16
37 38 3.012518 CAGTAATCCCCTCTTGCTGTTG 58.987 50.000 0.00 0.00 33.34 3.33
83 84 1.901591 CAGGATGGTGAACTTGCAGT 58.098 50.000 0.00 0.00 0.00 4.40
85 86 1.143684 AGGATGGTGAACTTGCAGTGT 59.856 47.619 0.00 0.00 0.00 3.55
99 100 1.522806 AGTGTGGCAGAACGCGAAA 60.523 52.632 15.93 0.00 43.84 3.46
106 107 2.022129 CAGAACGCGAAACCGAGCT 61.022 57.895 15.93 0.00 0.00 4.09
107 108 1.733399 AGAACGCGAAACCGAGCTC 60.733 57.895 15.93 2.73 0.00 4.09
108 109 2.727684 GAACGCGAAACCGAGCTCC 61.728 63.158 15.93 0.00 0.00 4.70
109 110 3.222354 AACGCGAAACCGAGCTCCT 62.222 57.895 15.93 0.00 0.00 3.69
110 111 1.870055 AACGCGAAACCGAGCTCCTA 61.870 55.000 15.93 0.00 0.00 2.94
111 112 1.872679 CGCGAAACCGAGCTCCTAC 60.873 63.158 8.47 0.00 0.00 3.18
112 113 1.872679 GCGAAACCGAGCTCCTACG 60.873 63.158 8.47 8.40 0.00 3.51
113 114 1.798735 CGAAACCGAGCTCCTACGA 59.201 57.895 8.47 0.00 0.00 3.43
114 115 0.522915 CGAAACCGAGCTCCTACGAC 60.523 60.000 8.47 0.00 0.00 4.34
115 116 0.179142 GAAACCGAGCTCCTACGACC 60.179 60.000 8.47 0.00 0.00 4.79
116 117 0.611340 AAACCGAGCTCCTACGACCT 60.611 55.000 8.47 0.00 0.00 3.85
117 118 1.031029 AACCGAGCTCCTACGACCTC 61.031 60.000 8.47 0.00 0.00 3.85
118 119 2.535788 CCGAGCTCCTACGACCTCG 61.536 68.421 8.47 0.00 41.78 4.63
119 120 2.535788 CGAGCTCCTACGACCTCGG 61.536 68.421 8.47 0.00 39.52 4.63
120 121 2.829458 AGCTCCTACGACCTCGGC 60.829 66.667 0.00 0.00 44.95 5.54
121 122 4.253257 GCTCCTACGACCTCGGCG 62.253 72.222 0.00 0.00 44.95 6.46
122 123 3.584052 CTCCTACGACCTCGGCGG 61.584 72.222 7.21 0.00 44.95 6.13
125 126 4.554363 CTACGACCTCGGCGGCAG 62.554 72.222 10.53 5.60 44.95 4.85
132 133 3.452786 CTCGGCGGCAGAGGAGAA 61.453 66.667 20.42 0.00 32.38 2.87
133 134 3.423162 CTCGGCGGCAGAGGAGAAG 62.423 68.421 20.42 0.00 32.38 2.85
134 135 3.452786 CGGCGGCAGAGGAGAAGA 61.453 66.667 10.53 0.00 0.00 2.87
135 136 2.498726 GGCGGCAGAGGAGAAGAG 59.501 66.667 3.07 0.00 0.00 2.85
136 137 2.498726 GCGGCAGAGGAGAAGAGG 59.501 66.667 0.00 0.00 0.00 3.69
137 138 2.055042 GCGGCAGAGGAGAAGAGGA 61.055 63.158 0.00 0.00 0.00 3.71
138 139 2.015227 GCGGCAGAGGAGAAGAGGAG 62.015 65.000 0.00 0.00 0.00 3.69
139 140 1.391157 CGGCAGAGGAGAAGAGGAGG 61.391 65.000 0.00 0.00 0.00 4.30
140 141 1.685355 GGCAGAGGAGAAGAGGAGGC 61.685 65.000 0.00 0.00 0.00 4.70
141 142 2.015227 GCAGAGGAGAAGAGGAGGCG 62.015 65.000 0.00 0.00 0.00 5.52
142 143 1.076339 AGAGGAGAAGAGGAGGCGG 60.076 63.158 0.00 0.00 0.00 6.13
143 144 2.762043 AGGAGAAGAGGAGGCGGC 60.762 66.667 0.00 0.00 0.00 6.53
144 145 4.214327 GGAGAAGAGGAGGCGGCG 62.214 72.222 0.51 0.51 0.00 6.46
145 146 4.214327 GAGAAGAGGAGGCGGCGG 62.214 72.222 9.78 0.00 0.00 6.13
161 162 4.794439 GGCGGTGGCGGAAAATGC 62.794 66.667 0.00 0.00 41.24 3.56
162 163 4.049640 GCGGTGGCGGAAAATGCA 62.050 61.111 0.00 0.00 0.00 3.96
163 164 2.179018 CGGTGGCGGAAAATGCAG 59.821 61.111 0.00 0.00 0.00 4.41
164 165 2.125952 GGTGGCGGAAAATGCAGC 60.126 61.111 0.00 0.00 0.00 5.25
165 166 2.504681 GTGGCGGAAAATGCAGCG 60.505 61.111 0.00 0.00 0.00 5.18
166 167 2.671276 TGGCGGAAAATGCAGCGA 60.671 55.556 0.00 0.00 0.00 4.93
167 168 2.202479 GGCGGAAAATGCAGCGAC 60.202 61.111 0.00 0.00 0.00 5.19
168 169 2.574212 GCGGAAAATGCAGCGACG 60.574 61.111 0.00 0.00 0.00 5.12
169 170 3.022401 GCGGAAAATGCAGCGACGA 62.022 57.895 0.00 0.00 0.00 4.20
170 171 1.225745 CGGAAAATGCAGCGACGAC 60.226 57.895 0.00 0.00 0.00 4.34
171 172 1.134694 GGAAAATGCAGCGACGACC 59.865 57.895 0.00 0.00 0.00 4.79
172 173 1.225745 GAAAATGCAGCGACGACCG 60.226 57.895 0.00 0.00 42.21 4.79
173 174 2.563086 GAAAATGCAGCGACGACCGG 62.563 60.000 0.00 0.00 39.04 5.28
174 175 3.583276 AAATGCAGCGACGACCGGA 62.583 57.895 9.46 0.00 39.04 5.14
175 176 4.796231 ATGCAGCGACGACCGGAC 62.796 66.667 9.46 0.00 39.04 4.79
182 183 3.507009 GACGACCGGACGGAGGAG 61.507 72.222 28.68 7.72 38.96 3.69
184 185 4.790962 CGACCGGACGGAGGAGGA 62.791 72.222 18.76 0.00 38.96 3.71
185 186 2.829458 GACCGGACGGAGGAGGAG 60.829 72.222 18.80 0.00 38.96 3.69
186 187 4.444081 ACCGGACGGAGGAGGAGG 62.444 72.222 18.80 0.00 38.96 4.30
187 188 4.124943 CCGGACGGAGGAGGAGGA 62.125 72.222 4.40 0.00 37.50 3.71
188 189 2.517402 CGGACGGAGGAGGAGGAG 60.517 72.222 0.00 0.00 0.00 3.69
189 190 2.123640 GGACGGAGGAGGAGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
190 191 2.684735 GACGGAGGAGGAGGAGGT 59.315 66.667 0.00 0.00 0.00 3.85
191 192 1.755008 GACGGAGGAGGAGGAGGTG 60.755 68.421 0.00 0.00 0.00 4.00
192 193 2.443016 CGGAGGAGGAGGAGGTGG 60.443 72.222 0.00 0.00 0.00 4.61
193 194 2.766229 GGAGGAGGAGGAGGTGGC 60.766 72.222 0.00 0.00 0.00 5.01
194 195 3.151022 GAGGAGGAGGAGGTGGCG 61.151 72.222 0.00 0.00 0.00 5.69
195 196 3.663815 GAGGAGGAGGAGGTGGCGA 62.664 68.421 0.00 0.00 0.00 5.54
196 197 3.462678 GGAGGAGGAGGTGGCGAC 61.463 72.222 0.00 0.00 0.00 5.19
197 198 2.363147 GAGGAGGAGGTGGCGACT 60.363 66.667 0.00 0.00 0.00 4.18
198 199 2.681778 AGGAGGAGGTGGCGACTG 60.682 66.667 0.00 0.00 0.00 3.51
199 200 3.775654 GGAGGAGGTGGCGACTGG 61.776 72.222 0.00 0.00 0.00 4.00
200 201 3.775654 GAGGAGGTGGCGACTGGG 61.776 72.222 0.00 0.00 0.00 4.45
222 223 4.225497 GGCCTTCCCATTCTGACG 57.775 61.111 0.00 0.00 0.00 4.35
223 224 2.115291 GGCCTTCCCATTCTGACGC 61.115 63.158 0.00 0.00 0.00 5.19
224 225 2.464459 GCCTTCCCATTCTGACGCG 61.464 63.158 3.53 3.53 0.00 6.01
225 226 2.464459 CCTTCCCATTCTGACGCGC 61.464 63.158 5.73 0.00 0.00 6.86
226 227 1.448540 CTTCCCATTCTGACGCGCT 60.449 57.895 5.73 0.00 0.00 5.92
227 228 1.424493 CTTCCCATTCTGACGCGCTC 61.424 60.000 5.73 3.58 0.00 5.03
228 229 3.257561 CCCATTCTGACGCGCTCG 61.258 66.667 5.73 0.00 42.43 5.03
229 230 3.918220 CCATTCTGACGCGCTCGC 61.918 66.667 5.73 3.90 39.84 5.03
230 231 3.181290 CATTCTGACGCGCTCGCA 61.181 61.111 5.73 0.00 42.06 5.10
231 232 2.202797 ATTCTGACGCGCTCGCAT 60.203 55.556 5.73 0.00 42.06 4.73
232 233 1.065764 ATTCTGACGCGCTCGCATA 59.934 52.632 5.73 0.00 42.06 3.14
233 234 1.209275 ATTCTGACGCGCTCGCATAC 61.209 55.000 5.73 5.41 42.06 2.39
234 235 3.323136 CTGACGCGCTCGCATACC 61.323 66.667 5.73 0.87 42.06 2.73
235 236 3.758088 CTGACGCGCTCGCATACCT 62.758 63.158 5.73 0.00 42.06 3.08
236 237 2.330393 GACGCGCTCGCATACCTA 59.670 61.111 5.73 0.00 42.06 3.08
237 238 1.298863 GACGCGCTCGCATACCTAA 60.299 57.895 5.73 0.00 42.06 2.69
238 239 1.269444 GACGCGCTCGCATACCTAAG 61.269 60.000 5.73 0.00 42.06 2.18
239 240 2.016704 CGCGCTCGCATACCTAAGG 61.017 63.158 14.80 0.00 42.06 2.69
240 241 1.067582 GCGCTCGCATACCTAAGGT 59.932 57.895 9.59 0.00 41.49 3.50
241 242 0.940047 GCGCTCGCATACCTAAGGTC 60.940 60.000 9.59 0.00 41.49 3.85
242 243 0.669077 CGCTCGCATACCTAAGGTCT 59.331 55.000 0.00 0.00 37.09 3.85
243 244 1.335142 CGCTCGCATACCTAAGGTCTC 60.335 57.143 0.00 0.00 37.09 3.36
244 245 1.957877 GCTCGCATACCTAAGGTCTCT 59.042 52.381 0.00 0.00 37.09 3.10
245 246 3.147629 GCTCGCATACCTAAGGTCTCTA 58.852 50.000 0.00 0.00 37.09 2.43
246 247 3.189702 GCTCGCATACCTAAGGTCTCTAG 59.810 52.174 0.00 0.00 37.09 2.43
247 248 4.643463 CTCGCATACCTAAGGTCTCTAGA 58.357 47.826 0.00 0.00 37.09 2.43
248 249 4.643463 TCGCATACCTAAGGTCTCTAGAG 58.357 47.826 13.98 13.98 37.09 2.43
249 250 3.189702 CGCATACCTAAGGTCTCTAGAGC 59.810 52.174 15.35 9.94 42.47 4.09
250 251 3.508402 GCATACCTAAGGTCTCTAGAGCC 59.492 52.174 15.35 17.96 43.11 4.70
251 252 2.759839 ACCTAAGGTCTCTAGAGCCC 57.240 55.000 22.20 18.26 43.11 5.19
252 253 1.930914 ACCTAAGGTCTCTAGAGCCCA 59.069 52.381 21.47 12.00 43.11 5.36
253 254 2.520549 ACCTAAGGTCTCTAGAGCCCAT 59.479 50.000 21.47 12.51 43.11 4.00
254 255 2.896685 CCTAAGGTCTCTAGAGCCCATG 59.103 54.545 21.47 10.43 43.11 3.66
255 256 2.856760 AAGGTCTCTAGAGCCCATGA 57.143 50.000 21.47 0.00 43.11 3.07
256 257 2.380064 AGGTCTCTAGAGCCCATGAG 57.620 55.000 21.47 0.00 43.11 2.90
257 258 0.678950 GGTCTCTAGAGCCCATGAGC 59.321 60.000 15.03 3.07 36.62 4.26
258 259 0.313672 GTCTCTAGAGCCCATGAGCG 59.686 60.000 15.35 0.00 38.01 5.03
259 260 0.183731 TCTCTAGAGCCCATGAGCGA 59.816 55.000 15.35 0.00 38.01 4.93
260 261 0.313672 CTCTAGAGCCCATGAGCGAC 59.686 60.000 6.86 0.00 38.01 5.19
261 262 1.109920 TCTAGAGCCCATGAGCGACC 61.110 60.000 0.00 0.00 38.01 4.79
262 263 1.381191 TAGAGCCCATGAGCGACCA 60.381 57.895 0.00 0.00 38.01 4.02
263 264 0.975556 TAGAGCCCATGAGCGACCAA 60.976 55.000 0.00 0.00 38.01 3.67
264 265 1.817099 GAGCCCATGAGCGACCAAG 60.817 63.158 0.00 0.00 38.01 3.61
265 266 3.512516 GCCCATGAGCGACCAAGC 61.513 66.667 0.00 0.00 37.41 4.01
266 267 3.197790 CCCATGAGCGACCAAGCG 61.198 66.667 0.00 0.00 43.00 4.68
267 268 3.197790 CCATGAGCGACCAAGCGG 61.198 66.667 0.00 0.00 43.00 5.52
268 269 3.197790 CATGAGCGACCAAGCGGG 61.198 66.667 0.00 0.00 43.00 6.13
286 287 4.918201 CCCGCCCATTCCGCTCTC 62.918 72.222 0.00 0.00 0.00 3.20
289 290 4.838152 GCCCATTCCGCTCTCGCA 62.838 66.667 0.00 0.00 35.30 5.10
290 291 2.587194 CCCATTCCGCTCTCGCAG 60.587 66.667 0.00 0.00 35.30 5.18
291 292 2.185350 CCATTCCGCTCTCGCAGT 59.815 61.111 0.00 0.00 35.30 4.40
292 293 2.169789 CCATTCCGCTCTCGCAGTG 61.170 63.158 0.00 0.00 35.30 3.66
293 294 1.446792 CATTCCGCTCTCGCAGTGT 60.447 57.895 0.00 0.00 35.30 3.55
294 295 0.179137 CATTCCGCTCTCGCAGTGTA 60.179 55.000 0.00 0.00 35.30 2.90
295 296 0.530744 ATTCCGCTCTCGCAGTGTAA 59.469 50.000 0.00 0.00 35.30 2.41
296 297 0.388134 TTCCGCTCTCGCAGTGTAAC 60.388 55.000 0.00 0.00 35.30 2.50
297 298 2.152699 CCGCTCTCGCAGTGTAACG 61.153 63.158 0.00 0.00 45.86 3.18
298 299 1.154282 CGCTCTCGCAGTGTAACGA 60.154 57.895 0.00 0.00 45.86 3.85
299 300 1.396543 CGCTCTCGCAGTGTAACGAC 61.397 60.000 0.00 0.00 45.86 4.34
300 301 0.109689 GCTCTCGCAGTGTAACGACT 60.110 55.000 0.00 0.00 45.86 4.18
301 302 1.884756 CTCTCGCAGTGTAACGACTC 58.115 55.000 0.00 0.00 45.86 3.36
302 303 0.165295 TCTCGCAGTGTAACGACTCG 59.835 55.000 0.00 0.00 45.86 4.18
303 304 0.793478 CTCGCAGTGTAACGACTCGG 60.793 60.000 2.98 0.00 45.86 4.63
304 305 1.081641 CGCAGTGTAACGACTCGGT 60.082 57.895 2.98 0.00 45.86 4.69
305 306 0.662374 CGCAGTGTAACGACTCGGTT 60.662 55.000 2.98 0.00 45.86 4.44
306 307 1.058404 GCAGTGTAACGACTCGGTTC 58.942 55.000 2.98 0.00 45.86 3.62
307 308 1.601162 GCAGTGTAACGACTCGGTTCA 60.601 52.381 2.98 0.00 45.86 3.18
308 309 2.734670 CAGTGTAACGACTCGGTTCAA 58.265 47.619 2.98 0.00 45.86 2.69
309 310 3.117794 CAGTGTAACGACTCGGTTCAAA 58.882 45.455 2.98 0.00 45.86 2.69
310 311 3.181774 CAGTGTAACGACTCGGTTCAAAG 59.818 47.826 2.98 0.00 45.86 2.77
311 312 3.067180 AGTGTAACGACTCGGTTCAAAGA 59.933 43.478 2.98 0.00 45.86 2.52
312 313 3.985925 GTGTAACGACTCGGTTCAAAGAT 59.014 43.478 2.98 0.00 0.00 2.40
313 314 5.048504 AGTGTAACGACTCGGTTCAAAGATA 60.049 40.000 2.98 0.00 45.86 1.98
314 315 5.285607 GTGTAACGACTCGGTTCAAAGATAG 59.714 44.000 2.98 0.00 0.00 2.08
315 316 4.778534 AACGACTCGGTTCAAAGATAGA 57.221 40.909 2.98 0.00 0.00 1.98
316 317 4.358494 ACGACTCGGTTCAAAGATAGAG 57.642 45.455 2.98 0.00 0.00 2.43
317 318 4.008330 ACGACTCGGTTCAAAGATAGAGA 58.992 43.478 2.98 0.00 0.00 3.10
318 319 4.095185 ACGACTCGGTTCAAAGATAGAGAG 59.905 45.833 2.98 0.00 0.00 3.20
319 320 4.356289 GACTCGGTTCAAAGATAGAGAGC 58.644 47.826 0.00 0.00 0.00 4.09
320 321 3.181495 ACTCGGTTCAAAGATAGAGAGCG 60.181 47.826 0.00 0.00 0.00 5.03
321 322 2.099263 TCGGTTCAAAGATAGAGAGCGG 59.901 50.000 0.00 0.00 0.00 5.52
322 323 2.159226 CGGTTCAAAGATAGAGAGCGGT 60.159 50.000 0.00 0.00 0.00 5.68
323 324 3.676324 CGGTTCAAAGATAGAGAGCGGTT 60.676 47.826 0.00 0.00 0.00 4.44
324 325 3.866327 GGTTCAAAGATAGAGAGCGGTTC 59.134 47.826 0.00 0.00 0.00 3.62
325 326 3.802948 TCAAAGATAGAGAGCGGTTCC 57.197 47.619 0.00 0.00 0.00 3.62
326 327 3.096852 TCAAAGATAGAGAGCGGTTCCA 58.903 45.455 0.00 0.00 0.00 3.53
327 328 3.706594 TCAAAGATAGAGAGCGGTTCCAT 59.293 43.478 0.00 0.00 0.00 3.41
328 329 4.162320 TCAAAGATAGAGAGCGGTTCCATT 59.838 41.667 0.00 0.00 0.00 3.16
329 330 4.762289 AAGATAGAGAGCGGTTCCATTT 57.238 40.909 0.00 0.00 0.00 2.32
330 331 4.762289 AGATAGAGAGCGGTTCCATTTT 57.238 40.909 0.00 0.00 0.00 1.82
331 332 4.698575 AGATAGAGAGCGGTTCCATTTTC 58.301 43.478 0.00 0.00 0.00 2.29
332 333 4.407296 AGATAGAGAGCGGTTCCATTTTCT 59.593 41.667 0.00 0.00 0.00 2.52
333 334 3.425162 AGAGAGCGGTTCCATTTTCTT 57.575 42.857 0.00 0.00 0.00 2.52
334 335 3.756117 AGAGAGCGGTTCCATTTTCTTT 58.244 40.909 0.00 0.00 0.00 2.52
335 336 4.145052 AGAGAGCGGTTCCATTTTCTTTT 58.855 39.130 0.00 0.00 0.00 2.27
336 337 4.216472 AGAGAGCGGTTCCATTTTCTTTTC 59.784 41.667 0.00 0.00 0.00 2.29
337 338 3.888930 AGAGCGGTTCCATTTTCTTTTCA 59.111 39.130 0.00 0.00 0.00 2.69
338 339 4.340950 AGAGCGGTTCCATTTTCTTTTCAA 59.659 37.500 0.00 0.00 0.00 2.69
339 340 5.011023 AGAGCGGTTCCATTTTCTTTTCAAT 59.989 36.000 0.00 0.00 0.00 2.57
340 341 6.208599 AGAGCGGTTCCATTTTCTTTTCAATA 59.791 34.615 0.00 0.00 0.00 1.90
341 342 6.935167 AGCGGTTCCATTTTCTTTTCAATAT 58.065 32.000 0.00 0.00 0.00 1.28
342 343 7.386059 AGCGGTTCCATTTTCTTTTCAATATT 58.614 30.769 0.00 0.00 0.00 1.28
343 344 7.545615 AGCGGTTCCATTTTCTTTTCAATATTC 59.454 33.333 0.00 0.00 0.00 1.75
344 345 7.545615 GCGGTTCCATTTTCTTTTCAATATTCT 59.454 33.333 0.00 0.00 0.00 2.40
345 346 8.863049 CGGTTCCATTTTCTTTTCAATATTCTG 58.137 33.333 0.00 0.00 0.00 3.02
346 347 9.710900 GGTTCCATTTTCTTTTCAATATTCTGT 57.289 29.630 0.00 0.00 0.00 3.41
383 384 8.710835 TTTTTCAGGAGTTTTTACATTTGGTC 57.289 30.769 0.00 0.00 0.00 4.02
384 385 7.654022 TTTCAGGAGTTTTTACATTTGGTCT 57.346 32.000 0.00 0.00 0.00 3.85
385 386 7.654022 TTCAGGAGTTTTTACATTTGGTCTT 57.346 32.000 0.00 0.00 0.00 3.01
386 387 7.654022 TCAGGAGTTTTTACATTTGGTCTTT 57.346 32.000 0.00 0.00 0.00 2.52
387 388 8.073467 TCAGGAGTTTTTACATTTGGTCTTTT 57.927 30.769 0.00 0.00 0.00 2.27
388 389 9.191479 TCAGGAGTTTTTACATTTGGTCTTTTA 57.809 29.630 0.00 0.00 0.00 1.52
389 390 9.810545 CAGGAGTTTTTACATTTGGTCTTTTAA 57.189 29.630 0.00 0.00 0.00 1.52
415 416 9.733556 AAAAGAAAAACAAAATTCTACCTTGGT 57.266 25.926 0.00 0.00 34.90 3.67
416 417 8.942338 AAGAAAAACAAAATTCTACCTTGGTC 57.058 30.769 0.00 0.00 34.90 4.02
417 418 8.073467 AGAAAAACAAAATTCTACCTTGGTCA 57.927 30.769 0.00 0.00 34.24 4.02
418 419 8.197439 AGAAAAACAAAATTCTACCTTGGTCAG 58.803 33.333 0.00 0.00 34.24 3.51
419 420 5.453567 AACAAAATTCTACCTTGGTCAGC 57.546 39.130 0.00 0.00 0.00 4.26
420 421 4.469657 ACAAAATTCTACCTTGGTCAGCA 58.530 39.130 0.00 0.00 0.00 4.41
421 422 5.079643 ACAAAATTCTACCTTGGTCAGCAT 58.920 37.500 0.00 0.00 0.00 3.79
422 423 6.245408 ACAAAATTCTACCTTGGTCAGCATA 58.755 36.000 0.00 0.00 0.00 3.14
423 424 6.891908 ACAAAATTCTACCTTGGTCAGCATAT 59.108 34.615 0.00 0.00 0.00 1.78
424 425 7.397192 ACAAAATTCTACCTTGGTCAGCATATT 59.603 33.333 0.00 0.00 0.00 1.28
425 426 7.961326 AAATTCTACCTTGGTCAGCATATTT 57.039 32.000 0.00 0.00 0.00 1.40
426 427 9.474313 AAAATTCTACCTTGGTCAGCATATTTA 57.526 29.630 0.00 0.00 0.00 1.40
427 428 9.474313 AAATTCTACCTTGGTCAGCATATTTAA 57.526 29.630 0.00 0.00 0.00 1.52
428 429 9.646522 AATTCTACCTTGGTCAGCATATTTAAT 57.353 29.630 0.00 0.00 0.00 1.40
429 430 9.646522 ATTCTACCTTGGTCAGCATATTTAATT 57.353 29.630 0.00 0.00 0.00 1.40
430 431 9.474313 TTCTACCTTGGTCAGCATATTTAATTT 57.526 29.630 0.00 0.00 0.00 1.82
431 432 9.120538 TCTACCTTGGTCAGCATATTTAATTTC 57.879 33.333 0.00 0.00 0.00 2.17
432 433 7.112452 ACCTTGGTCAGCATATTTAATTTCC 57.888 36.000 0.00 0.00 0.00 3.13
433 434 6.897413 ACCTTGGTCAGCATATTTAATTTCCT 59.103 34.615 0.00 0.00 0.00 3.36
434 435 7.147846 ACCTTGGTCAGCATATTTAATTTCCTG 60.148 37.037 0.00 0.00 0.00 3.86
435 436 7.068593 CCTTGGTCAGCATATTTAATTTCCTGA 59.931 37.037 0.00 0.00 0.00 3.86
436 437 7.333528 TGGTCAGCATATTTAATTTCCTGAC 57.666 36.000 9.85 9.85 44.08 3.51
437 438 6.889177 TGGTCAGCATATTTAATTTCCTGACA 59.111 34.615 16.95 5.29 45.66 3.58
438 439 7.395772 TGGTCAGCATATTTAATTTCCTGACAA 59.604 33.333 16.95 7.00 45.66 3.18
439 440 7.702348 GGTCAGCATATTTAATTTCCTGACAAC 59.298 37.037 16.95 2.51 45.66 3.32
440 441 8.243426 GTCAGCATATTTAATTTCCTGACAACA 58.757 33.333 12.41 0.00 44.17 3.33
441 442 8.970020 TCAGCATATTTAATTTCCTGACAACAT 58.030 29.630 0.00 0.00 0.00 2.71
442 443 9.590451 CAGCATATTTAATTTCCTGACAACATT 57.410 29.630 0.00 0.00 0.00 2.71
451 452 8.934507 AATTTCCTGACAACATTTTACGAAAA 57.065 26.923 0.00 0.00 34.41 2.29
452 453 8.934507 ATTTCCTGACAACATTTTACGAAAAA 57.065 26.923 0.00 0.00 38.87 1.94
488 489 8.617761 TTTTTAAAACGTTCTGTGTACATTCC 57.382 30.769 0.00 0.00 0.00 3.01
489 490 4.823790 AAAACGTTCTGTGTACATTCCC 57.176 40.909 0.00 0.00 0.00 3.97
490 491 3.764237 AACGTTCTGTGTACATTCCCT 57.236 42.857 0.00 0.00 0.00 4.20
491 492 3.764237 ACGTTCTGTGTACATTCCCTT 57.236 42.857 0.00 0.00 0.00 3.95
492 493 3.399330 ACGTTCTGTGTACATTCCCTTG 58.601 45.455 0.00 0.00 0.00 3.61
493 494 2.742053 CGTTCTGTGTACATTCCCTTGG 59.258 50.000 0.00 0.00 0.00 3.61
494 495 3.556213 CGTTCTGTGTACATTCCCTTGGA 60.556 47.826 0.00 0.00 0.00 3.53
495 496 4.394729 GTTCTGTGTACATTCCCTTGGAA 58.605 43.478 0.00 0.00 46.39 3.53
496 497 4.715534 TCTGTGTACATTCCCTTGGAAA 57.284 40.909 0.00 0.00 45.41 3.13
497 498 5.055265 TCTGTGTACATTCCCTTGGAAAA 57.945 39.130 0.00 0.00 45.41 2.29
498 499 5.070001 TCTGTGTACATTCCCTTGGAAAAG 58.930 41.667 0.00 0.00 45.41 2.27
499 500 4.148838 TGTGTACATTCCCTTGGAAAAGG 58.851 43.478 0.00 0.00 45.41 3.11
500 501 3.056821 GTGTACATTCCCTTGGAAAAGGC 60.057 47.826 0.00 0.00 45.41 4.35
501 502 2.702270 ACATTCCCTTGGAAAAGGCT 57.298 45.000 0.00 0.00 45.41 4.58
502 503 3.825908 ACATTCCCTTGGAAAAGGCTA 57.174 42.857 0.00 0.00 45.41 3.93
503 504 4.126520 ACATTCCCTTGGAAAAGGCTAA 57.873 40.909 0.00 0.00 45.41 3.09
504 505 3.832490 ACATTCCCTTGGAAAAGGCTAAC 59.168 43.478 0.00 0.00 45.41 2.34
505 506 3.895704 TTCCCTTGGAAAAGGCTAACT 57.104 42.857 0.00 0.00 38.93 2.24
506 507 3.895704 TCCCTTGGAAAAGGCTAACTT 57.104 42.857 0.00 0.00 42.52 2.66
583 584 7.497595 ACCTTTTGATCACTTTCTAAAAACCC 58.502 34.615 0.00 0.00 0.00 4.11
584 585 7.125053 ACCTTTTGATCACTTTCTAAAAACCCA 59.875 33.333 0.00 0.00 0.00 4.51
585 586 7.653311 CCTTTTGATCACTTTCTAAAAACCCAG 59.347 37.037 0.00 0.00 0.00 4.45
586 587 7.889873 TTTGATCACTTTCTAAAAACCCAGA 57.110 32.000 0.00 0.00 0.00 3.86
587 588 7.889873 TTGATCACTTTCTAAAAACCCAGAA 57.110 32.000 0.00 0.00 0.00 3.02
588 589 7.889873 TGATCACTTTCTAAAAACCCAGAAA 57.110 32.000 0.00 0.00 38.20 2.52
589 590 8.477419 TGATCACTTTCTAAAAACCCAGAAAT 57.523 30.769 0.00 0.00 39.40 2.17
590 591 8.923270 TGATCACTTTCTAAAAACCCAGAAATT 58.077 29.630 0.00 0.00 39.40 1.82
603 604 9.439500 AAAACCCAGAAATTAATTGATGATGTG 57.561 29.630 0.39 0.00 0.00 3.21
604 605 7.959658 ACCCAGAAATTAATTGATGATGTGA 57.040 32.000 0.39 0.00 0.00 3.58
605 606 8.365060 ACCCAGAAATTAATTGATGATGTGAA 57.635 30.769 0.39 0.00 0.00 3.18
606 607 8.984855 ACCCAGAAATTAATTGATGATGTGAAT 58.015 29.630 0.39 0.00 0.00 2.57
607 608 9.826574 CCCAGAAATTAATTGATGATGTGAATT 57.173 29.630 0.39 0.00 0.00 2.17
645 646 9.545105 AATTGAACATTTTAAAACTGCATCTCA 57.455 25.926 1.97 0.00 0.00 3.27
646 647 9.715121 ATTGAACATTTTAAAACTGCATCTCAT 57.285 25.926 1.97 1.80 0.00 2.90
647 648 8.523523 TGAACATTTTAAAACTGCATCTCATG 57.476 30.769 1.97 0.00 0.00 3.07
648 649 8.143193 TGAACATTTTAAAACTGCATCTCATGT 58.857 29.630 1.97 0.00 0.00 3.21
649 650 8.524870 AACATTTTAAAACTGCATCTCATGTC 57.475 30.769 1.97 0.00 0.00 3.06
650 651 6.803320 ACATTTTAAAACTGCATCTCATGTCG 59.197 34.615 1.97 0.00 0.00 4.35
651 652 6.552859 TTTTAAAACTGCATCTCATGTCGA 57.447 33.333 0.00 0.00 0.00 4.20
652 653 5.784750 TTAAAACTGCATCTCATGTCGAG 57.215 39.130 0.00 0.00 43.80 4.04
653 654 1.649664 AACTGCATCTCATGTCGAGC 58.350 50.000 0.00 0.00 41.98 5.03
654 655 0.822811 ACTGCATCTCATGTCGAGCT 59.177 50.000 0.00 0.00 41.98 4.09
655 656 1.202394 ACTGCATCTCATGTCGAGCTC 60.202 52.381 2.73 2.73 41.98 4.09
656 657 1.067364 CTGCATCTCATGTCGAGCTCT 59.933 52.381 12.85 0.00 41.98 4.09
657 658 1.479730 TGCATCTCATGTCGAGCTCTT 59.520 47.619 12.85 0.00 41.98 2.85
658 659 2.126467 GCATCTCATGTCGAGCTCTTC 58.874 52.381 12.85 5.14 41.98 2.87
659 660 2.480932 GCATCTCATGTCGAGCTCTTCA 60.481 50.000 12.85 10.89 41.98 3.02
660 661 3.778618 CATCTCATGTCGAGCTCTTCAA 58.221 45.455 12.85 0.00 41.98 2.69
661 662 3.942130 TCTCATGTCGAGCTCTTCAAA 57.058 42.857 12.85 3.37 41.98 2.69
662 663 4.257267 TCTCATGTCGAGCTCTTCAAAA 57.743 40.909 12.85 3.05 41.98 2.44
663 664 4.825422 TCTCATGTCGAGCTCTTCAAAAT 58.175 39.130 12.85 0.00 41.98 1.82
664 665 5.240891 TCTCATGTCGAGCTCTTCAAAATT 58.759 37.500 12.85 0.00 41.98 1.82
665 666 6.398095 TCTCATGTCGAGCTCTTCAAAATTA 58.602 36.000 12.85 0.00 41.98 1.40
666 667 6.533012 TCTCATGTCGAGCTCTTCAAAATTAG 59.467 38.462 12.85 5.87 41.98 1.73
667 668 6.398095 TCATGTCGAGCTCTTCAAAATTAGA 58.602 36.000 12.85 0.00 0.00 2.10
668 669 7.044181 TCATGTCGAGCTCTTCAAAATTAGAT 58.956 34.615 12.85 0.00 0.00 1.98
669 670 6.893958 TGTCGAGCTCTTCAAAATTAGATC 57.106 37.500 12.85 0.00 0.00 2.75
670 671 5.812642 TGTCGAGCTCTTCAAAATTAGATCC 59.187 40.000 12.85 0.00 0.00 3.36
671 672 5.235401 GTCGAGCTCTTCAAAATTAGATCCC 59.765 44.000 12.85 0.00 0.00 3.85
672 673 5.104941 TCGAGCTCTTCAAAATTAGATCCCA 60.105 40.000 12.85 0.00 0.00 4.37
673 674 5.762218 CGAGCTCTTCAAAATTAGATCCCAT 59.238 40.000 12.85 0.00 0.00 4.00
674 675 6.931281 CGAGCTCTTCAAAATTAGATCCCATA 59.069 38.462 12.85 0.00 0.00 2.74
675 676 7.605691 CGAGCTCTTCAAAATTAGATCCCATAT 59.394 37.037 12.85 0.00 0.00 1.78
676 677 9.294614 GAGCTCTTCAAAATTAGATCCCATATT 57.705 33.333 6.43 0.00 0.00 1.28
703 704 9.665264 AATAAGTTTCGATGAACTGTTTTTCTC 57.335 29.630 3.33 0.00 39.68 2.87
704 705 6.927294 AGTTTCGATGAACTGTTTTTCTCT 57.073 33.333 1.71 0.00 38.39 3.10
705 706 6.949449 AGTTTCGATGAACTGTTTTTCTCTC 58.051 36.000 1.71 0.00 38.39 3.20
706 707 6.538742 AGTTTCGATGAACTGTTTTTCTCTCA 59.461 34.615 1.71 0.00 38.39 3.27
707 708 6.918892 TTCGATGAACTGTTTTTCTCTCAA 57.081 33.333 0.00 0.00 0.00 3.02
708 709 6.918892 TCGATGAACTGTTTTTCTCTCAAA 57.081 33.333 0.00 0.00 0.00 2.69
709 710 7.315247 TCGATGAACTGTTTTTCTCTCAAAA 57.685 32.000 0.00 0.00 0.00 2.44
710 711 7.757526 TCGATGAACTGTTTTTCTCTCAAAAA 58.242 30.769 0.00 0.00 0.00 1.94
738 739 8.989653 AGGAAAACAAGAAAATACAAAAACGA 57.010 26.923 0.00 0.00 0.00 3.85
739 740 9.425577 AGGAAAACAAGAAAATACAAAAACGAA 57.574 25.926 0.00 0.00 0.00 3.85
762 763 9.741168 CGAAAAGAAAAAGAAAAAGAGAAAACC 57.259 29.630 0.00 0.00 0.00 3.27
766 767 9.554395 AAGAAAAAGAAAAAGAGAAAACCAACA 57.446 25.926 0.00 0.00 0.00 3.33
767 768 9.554395 AGAAAAAGAAAAAGAGAAAACCAACAA 57.446 25.926 0.00 0.00 0.00 2.83
768 769 9.594038 GAAAAAGAAAAAGAGAAAACCAACAAC 57.406 29.630 0.00 0.00 0.00 3.32
769 770 8.902540 AAAAGAAAAAGAGAAAACCAACAACT 57.097 26.923 0.00 0.00 0.00 3.16
770 771 7.889589 AAGAAAAAGAGAAAACCAACAACTG 57.110 32.000 0.00 0.00 0.00 3.16
771 772 7.227049 AGAAAAAGAGAAAACCAACAACTGA 57.773 32.000 0.00 0.00 0.00 3.41
772 773 7.315890 AGAAAAAGAGAAAACCAACAACTGAG 58.684 34.615 0.00 0.00 0.00 3.35
773 774 6.834168 AAAAGAGAAAACCAACAACTGAGA 57.166 33.333 0.00 0.00 0.00 3.27
774 775 6.834168 AAAGAGAAAACCAACAACTGAGAA 57.166 33.333 0.00 0.00 0.00 2.87
775 776 6.834168 AAGAGAAAACCAACAACTGAGAAA 57.166 33.333 0.00 0.00 0.00 2.52
776 777 6.834168 AGAGAAAACCAACAACTGAGAAAA 57.166 33.333 0.00 0.00 0.00 2.29
777 778 7.227049 AGAGAAAACCAACAACTGAGAAAAA 57.773 32.000 0.00 0.00 0.00 1.94
803 804 4.688770 AAAAACCAGCACCCCGAA 57.311 50.000 0.00 0.00 0.00 4.30
804 805 2.425562 AAAAACCAGCACCCCGAAG 58.574 52.632 0.00 0.00 0.00 3.79
805 806 1.744320 AAAAACCAGCACCCCGAAGC 61.744 55.000 0.00 0.00 0.00 3.86
806 807 2.920076 AAAACCAGCACCCCGAAGCA 62.920 55.000 0.00 0.00 0.00 3.91
807 808 2.713531 AAACCAGCACCCCGAAGCAT 62.714 55.000 0.00 0.00 0.00 3.79
808 809 3.136123 CCAGCACCCCGAAGCATG 61.136 66.667 0.00 0.00 0.00 4.06
809 810 3.136123 CAGCACCCCGAAGCATGG 61.136 66.667 0.00 0.00 0.00 3.66
810 811 3.650950 AGCACCCCGAAGCATGGT 61.651 61.111 0.00 0.00 0.00 3.55
811 812 2.676471 GCACCCCGAAGCATGGTT 60.676 61.111 10.50 10.50 0.00 3.67
812 813 2.993471 GCACCCCGAAGCATGGTTG 61.993 63.158 16.18 7.43 0.00 3.77
821 822 3.354678 GCATGGTTGCGGTCACTT 58.645 55.556 0.00 0.00 39.49 3.16
827 828 2.422597 TGGTTGCGGTCACTTATTGAG 58.577 47.619 0.00 0.00 33.71 3.02
957 959 1.877443 GTGGTAAACATCCGTGCACTT 59.123 47.619 16.19 3.53 0.00 3.16
962 964 0.951558 AACATCCGTGCACTTGTTCC 59.048 50.000 16.19 0.00 0.00 3.62
1394 1396 2.645297 TGGCTGTATCCTGTTGGGTTTA 59.355 45.455 0.00 0.00 36.25 2.01
2299 2859 4.742201 CACGCTACCGGCTGCAGT 62.742 66.667 16.64 13.20 39.22 4.40
2386 2947 5.121454 GCTTTATCTATGCCTGCTATGTGTC 59.879 44.000 0.00 0.00 0.00 3.67
2425 2986 2.108952 AGCTGAGGGGAAGATTTTGTGT 59.891 45.455 0.00 0.00 0.00 3.72
3079 3695 7.230849 TGTGATTTGGCTTGACTGAATTAAT 57.769 32.000 0.00 0.00 0.00 1.40
3313 3932 4.718276 TCAGTTGATGAATCATCCCTCTGA 59.282 41.667 23.89 23.89 39.87 3.27
4094 4931 5.045578 TCTCAGGTTTAAGAATGCTAAGCCT 60.046 40.000 0.00 0.00 35.28 4.58
4231 5068 2.036733 CTCTTGTTAACTCACCGGGTGA 59.963 50.000 27.17 27.17 40.50 4.02
4232 5069 2.635915 TCTTGTTAACTCACCGGGTGAT 59.364 45.455 28.85 18.17 41.94 3.06
4233 5070 2.465860 TGTTAACTCACCGGGTGATG 57.534 50.000 28.85 22.99 41.94 3.07
4234 5071 1.972075 TGTTAACTCACCGGGTGATGA 59.028 47.619 28.85 14.80 41.94 2.92
4235 5072 2.369203 TGTTAACTCACCGGGTGATGAA 59.631 45.455 28.85 19.28 41.94 2.57
4236 5073 3.181453 TGTTAACTCACCGGGTGATGAAA 60.181 43.478 28.85 19.07 41.94 2.69
4237 5074 2.879103 AACTCACCGGGTGATGAAAT 57.121 45.000 28.85 11.54 41.94 2.17
4238 5075 2.879103 ACTCACCGGGTGATGAAATT 57.121 45.000 28.85 7.83 41.94 1.82
4353 5200 2.462456 ATATGCATGGAGTAGCGGTG 57.538 50.000 10.16 0.00 0.00 4.94
4451 5300 1.003545 GCCCACGATCGATCACAATTG 60.004 52.381 24.34 3.24 0.00 2.32
4452 5301 1.599071 CCCACGATCGATCACAATTGG 59.401 52.381 24.34 19.00 0.00 3.16
4580 5429 1.268625 CATGCAGCTTCATGTGTGTGT 59.731 47.619 17.07 0.00 39.10 3.72
4581 5430 0.664224 TGCAGCTTCATGTGTGTGTG 59.336 50.000 0.00 0.00 0.00 3.82
4607 5462 2.126424 TATACACACACGCGCGCA 60.126 55.556 32.58 9.24 0.00 6.09
4756 5611 1.267806 CTGATTACATTCCCCATGCGC 59.732 52.381 0.00 0.00 36.14 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.183492 GGGATTACTGATGGCAGCCA 59.817 55.000 18.99 18.99 46.26 4.75
7 8 0.538287 GGGGATTACTGATGGCAGCC 60.538 60.000 3.66 3.66 46.26 4.85
8 9 0.475906 AGGGGATTACTGATGGCAGC 59.524 55.000 0.00 0.00 46.26 5.25
10 11 2.173356 CAAGAGGGGATTACTGATGGCA 59.827 50.000 0.00 0.00 0.00 4.92
11 12 2.856222 CAAGAGGGGATTACTGATGGC 58.144 52.381 0.00 0.00 0.00 4.40
12 13 2.441001 AGCAAGAGGGGATTACTGATGG 59.559 50.000 0.00 0.00 0.00 3.51
13 14 3.118112 ACAGCAAGAGGGGATTACTGATG 60.118 47.826 0.00 0.00 0.00 3.07
14 15 3.118531 ACAGCAAGAGGGGATTACTGAT 58.881 45.455 0.00 0.00 0.00 2.90
15 16 2.551270 ACAGCAAGAGGGGATTACTGA 58.449 47.619 0.00 0.00 0.00 3.41
16 17 3.012518 CAACAGCAAGAGGGGATTACTG 58.987 50.000 0.00 0.00 0.00 2.74
17 18 2.912956 TCAACAGCAAGAGGGGATTACT 59.087 45.455 0.00 0.00 0.00 2.24
18 19 3.350219 TCAACAGCAAGAGGGGATTAC 57.650 47.619 0.00 0.00 0.00 1.89
19 20 3.561313 GGTTCAACAGCAAGAGGGGATTA 60.561 47.826 0.00 0.00 0.00 1.75
20 21 2.519013 GTTCAACAGCAAGAGGGGATT 58.481 47.619 0.00 0.00 0.00 3.01
21 22 1.272147 GGTTCAACAGCAAGAGGGGAT 60.272 52.381 0.00 0.00 0.00 3.85
22 23 0.110486 GGTTCAACAGCAAGAGGGGA 59.890 55.000 0.00 0.00 0.00 4.81
23 24 0.111253 AGGTTCAACAGCAAGAGGGG 59.889 55.000 0.00 0.00 0.00 4.79
24 25 1.610522 CAAGGTTCAACAGCAAGAGGG 59.389 52.381 0.00 0.00 0.00 4.30
25 26 1.000938 GCAAGGTTCAACAGCAAGAGG 60.001 52.381 0.00 0.00 0.00 3.69
26 27 1.677576 TGCAAGGTTCAACAGCAAGAG 59.322 47.619 0.00 0.00 31.42 2.85
27 28 1.677576 CTGCAAGGTTCAACAGCAAGA 59.322 47.619 3.59 0.00 34.45 3.02
28 29 1.677576 TCTGCAAGGTTCAACAGCAAG 59.322 47.619 3.59 0.00 34.45 4.01
29 30 1.677576 CTCTGCAAGGTTCAACAGCAA 59.322 47.619 3.59 0.00 34.45 3.91
30 31 1.311859 CTCTGCAAGGTTCAACAGCA 58.688 50.000 2.19 2.19 0.00 4.41
31 32 0.595095 CCTCTGCAAGGTTCAACAGC 59.405 55.000 6.74 0.00 40.67 4.40
53 54 2.864114 CCATCCTGGTCTTGCACAG 58.136 57.895 0.00 0.00 31.35 3.66
81 82 1.522806 TTTCGCGTTCTGCCACACT 60.523 52.632 5.77 0.00 42.08 3.55
83 84 2.539338 GGTTTCGCGTTCTGCCACA 61.539 57.895 5.77 0.00 42.08 4.17
85 86 3.342627 CGGTTTCGCGTTCTGCCA 61.343 61.111 5.77 0.00 42.08 4.92
108 109 4.554363 CTGCCGCCGAGGTCGTAG 62.554 72.222 0.00 0.00 43.70 3.51
115 116 3.423162 CTTCTCCTCTGCCGCCGAG 62.423 68.421 4.89 4.89 0.00 4.63
116 117 3.452786 CTTCTCCTCTGCCGCCGA 61.453 66.667 0.00 0.00 0.00 5.54
117 118 3.423162 CTCTTCTCCTCTGCCGCCG 62.423 68.421 0.00 0.00 0.00 6.46
118 119 2.498726 CTCTTCTCCTCTGCCGCC 59.501 66.667 0.00 0.00 0.00 6.13
119 120 2.015227 CTCCTCTTCTCCTCTGCCGC 62.015 65.000 0.00 0.00 0.00 6.53
120 121 1.391157 CCTCCTCTTCTCCTCTGCCG 61.391 65.000 0.00 0.00 0.00 5.69
121 122 1.685355 GCCTCCTCTTCTCCTCTGCC 61.685 65.000 0.00 0.00 0.00 4.85
122 123 1.822615 GCCTCCTCTTCTCCTCTGC 59.177 63.158 0.00 0.00 0.00 4.26
123 124 1.391157 CCGCCTCCTCTTCTCCTCTG 61.391 65.000 0.00 0.00 0.00 3.35
124 125 1.076339 CCGCCTCCTCTTCTCCTCT 60.076 63.158 0.00 0.00 0.00 3.69
125 126 2.791868 GCCGCCTCCTCTTCTCCTC 61.792 68.421 0.00 0.00 0.00 3.71
126 127 2.762043 GCCGCCTCCTCTTCTCCT 60.762 66.667 0.00 0.00 0.00 3.69
127 128 4.214327 CGCCGCCTCCTCTTCTCC 62.214 72.222 0.00 0.00 0.00 3.71
128 129 4.214327 CCGCCGCCTCCTCTTCTC 62.214 72.222 0.00 0.00 0.00 2.87
143 144 4.474846 CATTTTCCGCCACCGCCG 62.475 66.667 0.00 0.00 0.00 6.46
144 145 4.794439 GCATTTTCCGCCACCGCC 62.794 66.667 0.00 0.00 0.00 6.13
145 146 3.969642 CTGCATTTTCCGCCACCGC 62.970 63.158 0.00 0.00 0.00 5.68
146 147 2.179018 CTGCATTTTCCGCCACCG 59.821 61.111 0.00 0.00 0.00 4.94
147 148 2.125952 GCTGCATTTTCCGCCACC 60.126 61.111 0.00 0.00 0.00 4.61
148 149 2.504681 CGCTGCATTTTCCGCCAC 60.505 61.111 0.00 0.00 0.00 5.01
149 150 2.671276 TCGCTGCATTTTCCGCCA 60.671 55.556 0.00 0.00 0.00 5.69
150 151 2.202479 GTCGCTGCATTTTCCGCC 60.202 61.111 0.00 0.00 0.00 6.13
151 152 2.574212 CGTCGCTGCATTTTCCGC 60.574 61.111 0.00 0.00 0.00 5.54
152 153 1.225745 GTCGTCGCTGCATTTTCCG 60.226 57.895 0.00 0.00 0.00 4.30
153 154 1.134694 GGTCGTCGCTGCATTTTCC 59.865 57.895 0.00 0.00 0.00 3.13
154 155 1.225745 CGGTCGTCGCTGCATTTTC 60.226 57.895 0.00 0.00 0.00 2.29
155 156 2.677003 CCGGTCGTCGCTGCATTTT 61.677 57.895 0.00 0.00 37.59 1.82
156 157 3.118454 CCGGTCGTCGCTGCATTT 61.118 61.111 0.00 0.00 37.59 2.32
157 158 4.063967 TCCGGTCGTCGCTGCATT 62.064 61.111 0.00 0.00 37.59 3.56
158 159 4.796231 GTCCGGTCGTCGCTGCAT 62.796 66.667 0.00 0.00 37.59 3.96
165 166 3.507009 CTCCTCCGTCCGGTCGTC 61.507 72.222 19.43 0.00 36.47 4.20
167 168 4.790962 TCCTCCTCCGTCCGGTCG 62.791 72.222 14.43 14.43 36.47 4.79
168 169 2.829458 CTCCTCCTCCGTCCGGTC 60.829 72.222 0.00 0.00 36.47 4.79
169 170 4.444081 CCTCCTCCTCCGTCCGGT 62.444 72.222 0.00 0.00 36.47 5.28
170 171 4.124943 TCCTCCTCCTCCGTCCGG 62.125 72.222 0.00 0.00 0.00 5.14
171 172 2.517402 CTCCTCCTCCTCCGTCCG 60.517 72.222 0.00 0.00 0.00 4.79
172 173 2.123640 CCTCCTCCTCCTCCGTCC 60.124 72.222 0.00 0.00 0.00 4.79
173 174 1.755008 CACCTCCTCCTCCTCCGTC 60.755 68.421 0.00 0.00 0.00 4.79
174 175 2.360980 CACCTCCTCCTCCTCCGT 59.639 66.667 0.00 0.00 0.00 4.69
175 176 2.443016 CCACCTCCTCCTCCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
176 177 2.766229 GCCACCTCCTCCTCCTCC 60.766 72.222 0.00 0.00 0.00 4.30
177 178 3.151022 CGCCACCTCCTCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
178 179 3.673597 TCGCCACCTCCTCCTCCT 61.674 66.667 0.00 0.00 0.00 3.69
179 180 3.462678 GTCGCCACCTCCTCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
180 181 2.363147 AGTCGCCACCTCCTCCTC 60.363 66.667 0.00 0.00 0.00 3.71
181 182 2.681778 CAGTCGCCACCTCCTCCT 60.682 66.667 0.00 0.00 0.00 3.69
182 183 3.775654 CCAGTCGCCACCTCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
183 184 3.775654 CCCAGTCGCCACCTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
205 206 2.115291 GCGTCAGAATGGGAAGGCC 61.115 63.158 0.00 0.00 36.16 5.19
206 207 2.464459 CGCGTCAGAATGGGAAGGC 61.464 63.158 0.00 0.00 36.16 4.35
207 208 2.464459 GCGCGTCAGAATGGGAAGG 61.464 63.158 8.43 0.00 36.16 3.46
208 209 1.424493 GAGCGCGTCAGAATGGGAAG 61.424 60.000 8.43 0.00 36.16 3.46
209 210 1.447838 GAGCGCGTCAGAATGGGAA 60.448 57.895 8.43 0.00 36.16 3.97
210 211 2.184322 GAGCGCGTCAGAATGGGA 59.816 61.111 8.43 0.00 36.16 4.37
211 212 3.257561 CGAGCGCGTCAGAATGGG 61.258 66.667 8.43 0.00 36.16 4.00
212 213 3.918220 GCGAGCGCGTCAGAATGG 61.918 66.667 12.44 0.00 40.36 3.16
213 214 1.208642 TATGCGAGCGCGTCAGAATG 61.209 55.000 13.32 0.00 45.51 2.67
214 215 1.065764 TATGCGAGCGCGTCAGAAT 59.934 52.632 13.32 1.52 45.51 2.40
215 216 1.872234 GTATGCGAGCGCGTCAGAA 60.872 57.895 13.32 0.00 45.51 3.02
216 217 2.277949 GTATGCGAGCGCGTCAGA 60.278 61.111 13.32 4.61 45.51 3.27
217 218 2.388494 TAGGTATGCGAGCGCGTCAG 62.388 60.000 13.32 0.00 45.51 3.51
218 219 1.995646 TTAGGTATGCGAGCGCGTCA 61.996 55.000 13.32 10.48 45.51 4.35
219 220 1.269444 CTTAGGTATGCGAGCGCGTC 61.269 60.000 13.32 4.48 45.51 5.19
220 221 1.299165 CTTAGGTATGCGAGCGCGT 60.299 57.895 12.44 14.37 45.51 6.01
221 222 2.016704 CCTTAGGTATGCGAGCGCG 61.017 63.158 5.14 5.14 45.51 6.86
222 223 0.940047 GACCTTAGGTATGCGAGCGC 60.940 60.000 2.88 8.08 35.25 5.92
223 224 0.669077 AGACCTTAGGTATGCGAGCG 59.331 55.000 2.88 0.00 35.25 5.03
224 225 1.957877 AGAGACCTTAGGTATGCGAGC 59.042 52.381 2.16 0.00 35.25 5.03
225 226 4.643463 TCTAGAGACCTTAGGTATGCGAG 58.357 47.826 2.16 2.63 35.25 5.03
226 227 4.643463 CTCTAGAGACCTTAGGTATGCGA 58.357 47.826 15.05 0.00 35.25 5.10
227 228 3.189702 GCTCTAGAGACCTTAGGTATGCG 59.810 52.174 24.24 0.00 35.25 4.73
228 229 3.508402 GGCTCTAGAGACCTTAGGTATGC 59.492 52.174 24.24 0.00 35.25 3.14
239 240 0.313672 CGCTCATGGGCTCTAGAGAC 59.686 60.000 24.24 21.27 35.10 3.36
240 241 0.183731 TCGCTCATGGGCTCTAGAGA 59.816 55.000 24.24 0.61 0.00 3.10
241 242 0.313672 GTCGCTCATGGGCTCTAGAG 59.686 60.000 17.16 15.85 0.00 2.43
242 243 1.109920 GGTCGCTCATGGGCTCTAGA 61.110 60.000 17.16 1.87 0.00 2.43
243 244 1.365633 GGTCGCTCATGGGCTCTAG 59.634 63.158 17.16 0.00 0.00 2.43
244 245 0.975556 TTGGTCGCTCATGGGCTCTA 60.976 55.000 17.16 3.72 0.00 2.43
245 246 2.249413 CTTGGTCGCTCATGGGCTCT 62.249 60.000 17.16 0.00 0.00 4.09
246 247 1.817099 CTTGGTCGCTCATGGGCTC 60.817 63.158 17.16 8.52 0.00 4.70
247 248 2.270205 CTTGGTCGCTCATGGGCT 59.730 61.111 17.16 0.00 0.00 5.19
248 249 3.512516 GCTTGGTCGCTCATGGGC 61.513 66.667 7.77 7.77 0.00 5.36
249 250 3.197790 CGCTTGGTCGCTCATGGG 61.198 66.667 0.00 0.00 0.00 4.00
250 251 3.197790 CCGCTTGGTCGCTCATGG 61.198 66.667 0.00 0.00 0.00 3.66
251 252 3.197790 CCCGCTTGGTCGCTCATG 61.198 66.667 0.00 0.00 0.00 3.07
269 270 4.918201 GAGAGCGGAATGGGCGGG 62.918 72.222 0.00 0.00 35.00 6.13
282 283 1.787281 CGAGTCGTTACACTGCGAGAG 60.787 57.143 3.82 0.00 37.82 3.20
283 284 0.165295 CGAGTCGTTACACTGCGAGA 59.835 55.000 3.82 0.00 37.82 4.04
284 285 0.793478 CCGAGTCGTTACACTGCGAG 60.793 60.000 12.31 0.00 37.82 5.03
285 286 1.208358 CCGAGTCGTTACACTGCGA 59.792 57.895 12.31 0.00 34.54 5.10
286 287 0.662374 AACCGAGTCGTTACACTGCG 60.662 55.000 12.31 0.00 0.00 5.18
287 288 1.058404 GAACCGAGTCGTTACACTGC 58.942 55.000 12.31 0.00 0.00 4.40
288 289 2.410785 TGAACCGAGTCGTTACACTG 57.589 50.000 12.31 0.00 0.00 3.66
289 290 3.067180 TCTTTGAACCGAGTCGTTACACT 59.933 43.478 12.31 0.00 0.00 3.55
290 291 3.374745 TCTTTGAACCGAGTCGTTACAC 58.625 45.455 12.31 0.00 0.00 2.90
291 292 3.713858 TCTTTGAACCGAGTCGTTACA 57.286 42.857 12.31 5.31 0.00 2.41
292 293 5.634896 TCTATCTTTGAACCGAGTCGTTAC 58.365 41.667 12.31 2.66 0.00 2.50
293 294 5.645067 TCTCTATCTTTGAACCGAGTCGTTA 59.355 40.000 12.31 0.00 0.00 3.18
294 295 4.458295 TCTCTATCTTTGAACCGAGTCGTT 59.542 41.667 12.31 5.94 0.00 3.85
295 296 4.008330 TCTCTATCTTTGAACCGAGTCGT 58.992 43.478 12.31 0.00 0.00 4.34
296 297 4.593157 CTCTCTATCTTTGAACCGAGTCG 58.407 47.826 5.29 5.29 0.00 4.18
297 298 4.356289 GCTCTCTATCTTTGAACCGAGTC 58.644 47.826 0.00 0.00 0.00 3.36
298 299 3.181495 CGCTCTCTATCTTTGAACCGAGT 60.181 47.826 0.00 0.00 0.00 4.18
299 300 3.367607 CGCTCTCTATCTTTGAACCGAG 58.632 50.000 0.00 0.00 0.00 4.63
300 301 2.099263 CCGCTCTCTATCTTTGAACCGA 59.901 50.000 0.00 0.00 0.00 4.69
301 302 2.159226 ACCGCTCTCTATCTTTGAACCG 60.159 50.000 0.00 0.00 0.00 4.44
302 303 3.528597 ACCGCTCTCTATCTTTGAACC 57.471 47.619 0.00 0.00 0.00 3.62
303 304 3.866327 GGAACCGCTCTCTATCTTTGAAC 59.134 47.826 0.00 0.00 0.00 3.18
304 305 3.513912 TGGAACCGCTCTCTATCTTTGAA 59.486 43.478 0.00 0.00 0.00 2.69
305 306 3.096852 TGGAACCGCTCTCTATCTTTGA 58.903 45.455 0.00 0.00 0.00 2.69
306 307 3.526931 TGGAACCGCTCTCTATCTTTG 57.473 47.619 0.00 0.00 0.00 2.77
307 308 4.762289 AATGGAACCGCTCTCTATCTTT 57.238 40.909 0.00 0.00 0.00 2.52
308 309 4.762289 AAATGGAACCGCTCTCTATCTT 57.238 40.909 0.00 0.00 0.00 2.40
309 310 4.407296 AGAAAATGGAACCGCTCTCTATCT 59.593 41.667 0.00 0.00 0.00 1.98
310 311 4.698575 AGAAAATGGAACCGCTCTCTATC 58.301 43.478 0.00 0.00 0.00 2.08
311 312 4.762289 AGAAAATGGAACCGCTCTCTAT 57.238 40.909 0.00 0.00 0.00 1.98
312 313 4.553330 AAGAAAATGGAACCGCTCTCTA 57.447 40.909 0.00 0.00 0.00 2.43
313 314 3.425162 AAGAAAATGGAACCGCTCTCT 57.575 42.857 0.00 0.00 0.00 3.10
314 315 4.023193 TGAAAAGAAAATGGAACCGCTCTC 60.023 41.667 0.00 0.00 0.00 3.20
315 316 3.888930 TGAAAAGAAAATGGAACCGCTCT 59.111 39.130 0.00 0.00 0.00 4.09
316 317 4.237349 TGAAAAGAAAATGGAACCGCTC 57.763 40.909 0.00 0.00 0.00 5.03
317 318 4.664150 TTGAAAAGAAAATGGAACCGCT 57.336 36.364 0.00 0.00 0.00 5.52
318 319 7.545615 AGAATATTGAAAAGAAAATGGAACCGC 59.454 33.333 0.00 0.00 0.00 5.68
319 320 8.863049 CAGAATATTGAAAAGAAAATGGAACCG 58.137 33.333 0.00 0.00 0.00 4.44
320 321 9.710900 ACAGAATATTGAAAAGAAAATGGAACC 57.289 29.630 0.00 0.00 0.00 3.62
358 359 8.536175 AGACCAAATGTAAAAACTCCTGAAAAA 58.464 29.630 0.00 0.00 0.00 1.94
359 360 8.073467 AGACCAAATGTAAAAACTCCTGAAAA 57.927 30.769 0.00 0.00 0.00 2.29
360 361 7.654022 AGACCAAATGTAAAAACTCCTGAAA 57.346 32.000 0.00 0.00 0.00 2.69
361 362 7.654022 AAGACCAAATGTAAAAACTCCTGAA 57.346 32.000 0.00 0.00 0.00 3.02
362 363 7.654022 AAAGACCAAATGTAAAAACTCCTGA 57.346 32.000 0.00 0.00 0.00 3.86
363 364 9.810545 TTAAAAGACCAAATGTAAAAACTCCTG 57.189 29.630 0.00 0.00 0.00 3.86
389 390 9.733556 ACCAAGGTAGAATTTTGTTTTTCTTTT 57.266 25.926 0.00 0.00 34.22 2.27
390 391 9.378551 GACCAAGGTAGAATTTTGTTTTTCTTT 57.621 29.630 0.00 0.00 34.22 2.52
391 392 8.536175 TGACCAAGGTAGAATTTTGTTTTTCTT 58.464 29.630 0.00 0.00 34.22 2.52
392 393 8.073467 TGACCAAGGTAGAATTTTGTTTTTCT 57.927 30.769 0.00 0.00 36.26 2.52
393 394 7.042725 GCTGACCAAGGTAGAATTTTGTTTTTC 60.043 37.037 0.00 0.00 0.00 2.29
394 395 6.761242 GCTGACCAAGGTAGAATTTTGTTTTT 59.239 34.615 0.00 0.00 0.00 1.94
395 396 6.127196 TGCTGACCAAGGTAGAATTTTGTTTT 60.127 34.615 0.00 0.00 0.00 2.43
396 397 5.362430 TGCTGACCAAGGTAGAATTTTGTTT 59.638 36.000 0.00 0.00 0.00 2.83
397 398 4.892934 TGCTGACCAAGGTAGAATTTTGTT 59.107 37.500 0.00 0.00 0.00 2.83
398 399 4.469657 TGCTGACCAAGGTAGAATTTTGT 58.530 39.130 0.00 0.00 0.00 2.83
399 400 5.649782 ATGCTGACCAAGGTAGAATTTTG 57.350 39.130 0.00 0.00 0.00 2.44
400 401 7.961326 AATATGCTGACCAAGGTAGAATTTT 57.039 32.000 0.00 0.00 0.00 1.82
401 402 7.961326 AAATATGCTGACCAAGGTAGAATTT 57.039 32.000 0.00 0.00 0.00 1.82
402 403 9.646522 ATTAAATATGCTGACCAAGGTAGAATT 57.353 29.630 0.00 0.00 0.00 2.17
403 404 9.646522 AATTAAATATGCTGACCAAGGTAGAAT 57.353 29.630 0.00 0.00 0.00 2.40
404 405 9.474313 AAATTAAATATGCTGACCAAGGTAGAA 57.526 29.630 0.00 0.00 0.00 2.10
405 406 9.120538 GAAATTAAATATGCTGACCAAGGTAGA 57.879 33.333 0.00 0.00 0.00 2.59
406 407 8.352942 GGAAATTAAATATGCTGACCAAGGTAG 58.647 37.037 0.00 0.00 0.00 3.18
407 408 8.058847 AGGAAATTAAATATGCTGACCAAGGTA 58.941 33.333 0.00 0.00 0.00 3.08
408 409 6.897413 AGGAAATTAAATATGCTGACCAAGGT 59.103 34.615 0.00 0.00 0.00 3.50
409 410 7.068593 TCAGGAAATTAAATATGCTGACCAAGG 59.931 37.037 5.88 0.00 36.74 3.61
410 411 7.999679 TCAGGAAATTAAATATGCTGACCAAG 58.000 34.615 5.88 0.00 36.74 3.61
411 412 7.953005 TCAGGAAATTAAATATGCTGACCAA 57.047 32.000 5.88 0.00 36.74 3.67
415 416 8.347004 TGTTGTCAGGAAATTAAATATGCTGA 57.653 30.769 5.88 5.88 38.90 4.26
416 417 9.590451 AATGTTGTCAGGAAATTAAATATGCTG 57.410 29.630 2.06 2.06 34.27 4.41
426 427 8.934507 TTTTCGTAAAATGTTGTCAGGAAATT 57.065 26.923 0.00 0.00 0.00 1.82
427 428 8.934507 TTTTTCGTAAAATGTTGTCAGGAAAT 57.065 26.923 0.00 0.00 0.00 2.17
463 464 7.701501 GGGAATGTACACAGAACGTTTTAAAAA 59.298 33.333 0.46 0.00 0.00 1.94
464 465 7.067251 AGGGAATGTACACAGAACGTTTTAAAA 59.933 33.333 0.46 0.00 0.00 1.52
465 466 6.543100 AGGGAATGTACACAGAACGTTTTAAA 59.457 34.615 0.46 0.00 0.00 1.52
466 467 6.056884 AGGGAATGTACACAGAACGTTTTAA 58.943 36.000 0.46 0.00 0.00 1.52
467 468 5.613329 AGGGAATGTACACAGAACGTTTTA 58.387 37.500 0.46 0.00 0.00 1.52
468 469 4.457466 AGGGAATGTACACAGAACGTTTT 58.543 39.130 0.46 0.00 0.00 2.43
469 470 4.081322 AGGGAATGTACACAGAACGTTT 57.919 40.909 0.46 0.00 0.00 3.60
470 471 3.764237 AGGGAATGTACACAGAACGTT 57.236 42.857 0.00 0.00 0.00 3.99
471 472 3.399330 CAAGGGAATGTACACAGAACGT 58.601 45.455 0.00 0.00 0.00 3.99
472 473 2.742053 CCAAGGGAATGTACACAGAACG 59.258 50.000 0.00 0.00 0.00 3.95
473 474 4.015872 TCCAAGGGAATGTACACAGAAC 57.984 45.455 0.00 0.00 0.00 3.01
474 475 4.715534 TTCCAAGGGAATGTACACAGAA 57.284 40.909 0.00 0.00 36.71 3.02
475 476 4.715534 TTTCCAAGGGAATGTACACAGA 57.284 40.909 0.00 0.00 41.71 3.41
476 477 4.218417 CCTTTTCCAAGGGAATGTACACAG 59.782 45.833 0.00 0.00 45.63 3.66
477 478 4.148838 CCTTTTCCAAGGGAATGTACACA 58.851 43.478 0.00 0.00 45.63 3.72
478 479 4.783764 CCTTTTCCAAGGGAATGTACAC 57.216 45.455 0.00 0.00 45.63 2.90
557 558 8.635328 GGGTTTTTAGAAAGTGATCAAAAGGTA 58.365 33.333 0.00 0.00 0.00 3.08
558 559 7.125053 TGGGTTTTTAGAAAGTGATCAAAAGGT 59.875 33.333 0.00 0.00 0.00 3.50
559 560 7.496747 TGGGTTTTTAGAAAGTGATCAAAAGG 58.503 34.615 0.00 0.00 0.00 3.11
560 561 8.413229 TCTGGGTTTTTAGAAAGTGATCAAAAG 58.587 33.333 0.00 0.00 0.00 2.27
561 562 8.299990 TCTGGGTTTTTAGAAAGTGATCAAAA 57.700 30.769 0.00 0.00 0.00 2.44
562 563 7.889873 TCTGGGTTTTTAGAAAGTGATCAAA 57.110 32.000 0.00 0.00 0.00 2.69
563 564 7.889873 TTCTGGGTTTTTAGAAAGTGATCAA 57.110 32.000 0.00 0.00 30.49 2.57
564 565 7.889873 TTTCTGGGTTTTTAGAAAGTGATCA 57.110 32.000 0.00 0.00 37.83 2.92
577 578 9.439500 CACATCATCAATTAATTTCTGGGTTTT 57.561 29.630 0.00 0.00 0.00 2.43
578 579 8.814931 TCACATCATCAATTAATTTCTGGGTTT 58.185 29.630 0.00 0.00 0.00 3.27
579 580 8.365060 TCACATCATCAATTAATTTCTGGGTT 57.635 30.769 0.00 0.00 0.00 4.11
580 581 7.959658 TCACATCATCAATTAATTTCTGGGT 57.040 32.000 0.00 0.02 0.00 4.51
581 582 9.826574 AATTCACATCATCAATTAATTTCTGGG 57.173 29.630 0.00 0.00 0.00 4.45
619 620 9.545105 TGAGATGCAGTTTTAAAATGTTCAATT 57.455 25.926 3.52 0.00 0.00 2.32
620 621 9.715121 ATGAGATGCAGTTTTAAAATGTTCAAT 57.285 25.926 3.52 0.00 0.00 2.57
621 622 8.980610 CATGAGATGCAGTTTTAAAATGTTCAA 58.019 29.630 3.52 0.00 0.00 2.69
622 623 8.143193 ACATGAGATGCAGTTTTAAAATGTTCA 58.857 29.630 3.52 6.62 0.00 3.18
623 624 8.524870 ACATGAGATGCAGTTTTAAAATGTTC 57.475 30.769 3.52 4.93 0.00 3.18
624 625 7.326789 CGACATGAGATGCAGTTTTAAAATGTT 59.673 33.333 3.52 0.00 0.00 2.71
625 626 6.803320 CGACATGAGATGCAGTTTTAAAATGT 59.197 34.615 3.52 0.30 0.00 2.71
626 627 7.022979 TCGACATGAGATGCAGTTTTAAAATG 58.977 34.615 3.52 0.41 0.00 2.32
627 628 7.144722 TCGACATGAGATGCAGTTTTAAAAT 57.855 32.000 3.52 0.00 0.00 1.82
628 629 6.552859 TCGACATGAGATGCAGTTTTAAAA 57.447 33.333 0.00 0.00 0.00 1.52
629 630 9.206121 GAGCTCGACATGAGATGCAGTTTTAAA 62.206 40.741 0.00 0.00 45.13 1.52
630 631 7.825396 GAGCTCGACATGAGATGCAGTTTTAA 61.825 42.308 0.00 0.00 45.13 1.52
631 632 6.414966 GAGCTCGACATGAGATGCAGTTTTA 61.415 44.000 0.00 0.00 45.13 1.52
632 633 5.678964 GAGCTCGACATGAGATGCAGTTTT 61.679 45.833 0.00 0.00 45.13 2.43
633 634 4.228356 GAGCTCGACATGAGATGCAGTTT 61.228 47.826 0.00 0.00 45.13 2.66
634 635 2.738000 GAGCTCGACATGAGATGCAGTT 60.738 50.000 0.00 0.00 45.13 3.16
635 636 1.202394 GAGCTCGACATGAGATGCAGT 60.202 52.381 0.00 0.00 45.13 4.40
636 637 1.067364 AGAGCTCGACATGAGATGCAG 59.933 52.381 8.37 0.00 45.13 4.41
637 638 1.109609 AGAGCTCGACATGAGATGCA 58.890 50.000 8.37 0.00 45.13 3.96
638 639 2.126467 GAAGAGCTCGACATGAGATGC 58.874 52.381 8.37 4.78 45.13 3.91
639 640 3.433513 TGAAGAGCTCGACATGAGATG 57.566 47.619 8.37 0.00 45.13 2.90
643 644 6.398095 TCTAATTTTGAAGAGCTCGACATGA 58.602 36.000 8.37 5.06 0.00 3.07
644 645 6.653273 TCTAATTTTGAAGAGCTCGACATG 57.347 37.500 8.37 0.00 0.00 3.21
645 646 6.481644 GGATCTAATTTTGAAGAGCTCGACAT 59.518 38.462 8.37 0.00 0.00 3.06
646 647 5.812642 GGATCTAATTTTGAAGAGCTCGACA 59.187 40.000 8.37 9.84 0.00 4.35
647 648 5.235401 GGGATCTAATTTTGAAGAGCTCGAC 59.765 44.000 8.37 7.15 0.00 4.20
648 649 5.104941 TGGGATCTAATTTTGAAGAGCTCGA 60.105 40.000 8.37 0.00 31.11 4.04
649 650 5.118990 TGGGATCTAATTTTGAAGAGCTCG 58.881 41.667 8.37 0.00 31.11 5.03
650 651 8.860780 ATATGGGATCTAATTTTGAAGAGCTC 57.139 34.615 5.27 5.27 0.00 4.09
677 678 9.665264 GAGAAAAACAGTTCATCGAAACTTATT 57.335 29.630 0.00 0.00 37.38 1.40
678 679 9.057089 AGAGAAAAACAGTTCATCGAAACTTAT 57.943 29.630 0.00 0.00 37.38 1.73
679 680 8.433421 AGAGAAAAACAGTTCATCGAAACTTA 57.567 30.769 0.00 0.00 37.38 2.24
680 681 7.065803 TGAGAGAAAAACAGTTCATCGAAACTT 59.934 33.333 0.00 0.00 37.38 2.66
681 682 6.538742 TGAGAGAAAAACAGTTCATCGAAACT 59.461 34.615 0.00 0.00 40.08 2.66
682 683 6.715464 TGAGAGAAAAACAGTTCATCGAAAC 58.285 36.000 0.00 0.00 0.00 2.78
683 684 6.918892 TGAGAGAAAAACAGTTCATCGAAA 57.081 33.333 0.00 0.00 0.00 3.46
684 685 6.918892 TTGAGAGAAAAACAGTTCATCGAA 57.081 33.333 0.00 0.00 0.00 3.71
685 686 6.918892 TTTGAGAGAAAAACAGTTCATCGA 57.081 33.333 0.00 0.00 0.00 3.59
686 687 7.969387 TTTTTGAGAGAAAAACAGTTCATCG 57.031 32.000 0.00 0.00 0.00 3.84
712 713 9.425577 TCGTTTTTGTATTTTCTTGTTTTCCTT 57.574 25.926 0.00 0.00 0.00 3.36
713 714 8.989653 TCGTTTTTGTATTTTCTTGTTTTCCT 57.010 26.923 0.00 0.00 0.00 3.36
736 737 9.741168 GGTTTTCTCTTTTTCTTTTTCTTTTCG 57.259 29.630 0.00 0.00 0.00 3.46
740 741 9.554395 TGTTGGTTTTCTCTTTTTCTTTTTCTT 57.446 25.926 0.00 0.00 0.00 2.52
741 742 9.554395 TTGTTGGTTTTCTCTTTTTCTTTTTCT 57.446 25.926 0.00 0.00 0.00 2.52
742 743 9.594038 GTTGTTGGTTTTCTCTTTTTCTTTTTC 57.406 29.630 0.00 0.00 0.00 2.29
743 744 9.337396 AGTTGTTGGTTTTCTCTTTTTCTTTTT 57.663 25.926 0.00 0.00 0.00 1.94
744 745 8.773645 CAGTTGTTGGTTTTCTCTTTTTCTTTT 58.226 29.630 0.00 0.00 0.00 2.27
745 746 8.147704 TCAGTTGTTGGTTTTCTCTTTTTCTTT 58.852 29.630 0.00 0.00 0.00 2.52
746 747 7.666623 TCAGTTGTTGGTTTTCTCTTTTTCTT 58.333 30.769 0.00 0.00 0.00 2.52
747 748 7.176690 TCTCAGTTGTTGGTTTTCTCTTTTTCT 59.823 33.333 0.00 0.00 0.00 2.52
748 749 7.312899 TCTCAGTTGTTGGTTTTCTCTTTTTC 58.687 34.615 0.00 0.00 0.00 2.29
749 750 7.227049 TCTCAGTTGTTGGTTTTCTCTTTTT 57.773 32.000 0.00 0.00 0.00 1.94
750 751 6.834168 TCTCAGTTGTTGGTTTTCTCTTTT 57.166 33.333 0.00 0.00 0.00 2.27
751 752 6.834168 TTCTCAGTTGTTGGTTTTCTCTTT 57.166 33.333 0.00 0.00 0.00 2.52
752 753 6.834168 TTTCTCAGTTGTTGGTTTTCTCTT 57.166 33.333 0.00 0.00 0.00 2.85
753 754 6.834168 TTTTCTCAGTTGTTGGTTTTCTCT 57.166 33.333 0.00 0.00 0.00 3.10
786 787 1.744320 GCTTCGGGGTGCTGGTTTTT 61.744 55.000 0.00 0.00 0.00 1.94
787 788 2.200337 GCTTCGGGGTGCTGGTTTT 61.200 57.895 0.00 0.00 0.00 2.43
788 789 2.597510 GCTTCGGGGTGCTGGTTT 60.598 61.111 0.00 0.00 0.00 3.27
789 790 3.210012 ATGCTTCGGGGTGCTGGTT 62.210 57.895 0.00 0.00 0.00 3.67
790 791 3.650950 ATGCTTCGGGGTGCTGGT 61.651 61.111 0.00 0.00 0.00 4.00
791 792 3.136123 CATGCTTCGGGGTGCTGG 61.136 66.667 0.00 0.00 0.00 4.85
792 793 3.136123 CCATGCTTCGGGGTGCTG 61.136 66.667 0.00 0.00 0.00 4.41
793 794 3.210012 AACCATGCTTCGGGGTGCT 62.210 57.895 0.00 0.00 34.51 4.40
794 795 2.676471 AACCATGCTTCGGGGTGC 60.676 61.111 0.00 0.00 34.51 5.01
795 796 3.277133 CAACCATGCTTCGGGGTG 58.723 61.111 0.00 0.00 35.16 4.61
804 805 6.722225 CTCAATAAGTGACCGCAACCATGC 62.722 50.000 0.00 0.00 39.56 4.06
805 806 2.746904 TCAATAAGTGACCGCAACCATG 59.253 45.455 0.00 0.00 0.00 3.66
806 807 3.009723 CTCAATAAGTGACCGCAACCAT 58.990 45.455 0.00 0.00 31.13 3.55
807 808 2.422597 CTCAATAAGTGACCGCAACCA 58.577 47.619 0.00 0.00 31.13 3.67
808 809 1.130561 GCTCAATAAGTGACCGCAACC 59.869 52.381 0.00 0.00 29.82 3.77
809 810 1.804151 TGCTCAATAAGTGACCGCAAC 59.196 47.619 0.00 0.00 35.21 4.17
810 811 2.177394 TGCTCAATAAGTGACCGCAA 57.823 45.000 0.00 0.00 35.21 4.85
811 812 2.401583 ATGCTCAATAAGTGACCGCA 57.598 45.000 0.00 0.00 40.53 5.69
812 813 6.539649 TTTATATGCTCAATAAGTGACCGC 57.460 37.500 0.00 0.00 31.13 5.68
813 814 8.223769 GTGATTTATATGCTCAATAAGTGACCG 58.776 37.037 0.00 0.00 31.13 4.79
814 815 9.277783 AGTGATTTATATGCTCAATAAGTGACC 57.722 33.333 0.00 0.00 31.13 4.02
827 828 6.402550 CGGGTTGCATAGAGTGATTTATATGC 60.403 42.308 8.67 8.67 46.81 3.14
957 959 2.632512 TCATGCAGTGTACAGAGGAACA 59.367 45.455 0.00 0.00 0.00 3.18
962 964 3.736433 GCCTAGTCATGCAGTGTACAGAG 60.736 52.174 0.00 0.00 0.00 3.35
1017 1019 1.304282 GACTGCCACATGGACCCAT 59.696 57.895 0.87 0.00 37.39 4.00
1394 1396 1.204941 CAGGCGCTGTAACTCCTAAGT 59.795 52.381 7.64 0.00 37.32 2.24
2386 2947 2.061028 GCTTGCTTGGATTTTTGTCGG 58.939 47.619 0.00 0.00 0.00 4.79
3079 3695 7.151308 CACAAAAGTGGGCATACAGAAAATAA 58.849 34.615 0.00 0.00 0.00 1.40
3313 3932 3.382546 GCCACATGCCTTCAATAAGACAT 59.617 43.478 0.00 0.00 36.36 3.06
3483 4107 9.378551 TCATTTGGCTGTATAGTTTACTTACAG 57.621 33.333 17.99 17.99 43.58 2.74
4273 5120 8.235226 TGTACGAGTAGAATACAAACTCAGAAG 58.765 37.037 0.00 0.00 46.26 2.85
4350 5197 5.923684 TCTTTTTATTTTGACCAATCGCACC 59.076 36.000 0.00 0.00 0.00 5.01
4353 5200 6.089417 CCTGTCTTTTTATTTTGACCAATCGC 59.911 38.462 0.00 0.00 0.00 4.58
4451 5300 1.061131 CATGTTCGTCGACTTGATGCC 59.939 52.381 14.70 0.00 33.35 4.40
4452 5301 1.992667 TCATGTTCGTCGACTTGATGC 59.007 47.619 14.70 1.96 33.35 3.91
4607 5462 2.045926 GGGCTCATGGCTTCACGT 60.046 61.111 6.20 0.00 41.46 4.49
4756 5611 0.179029 AAGGGTGGGAACGTCAACAG 60.179 55.000 0.00 0.00 0.00 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.