Multiple sequence alignment - TraesCS5A01G366800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G366800 chr5A 100.000 5468 0 0 710 6177 566701001 566706468 0.000000e+00 10098
1 TraesCS5A01G366800 chr5A 86.930 811 79 10 4446 5244 566781066 566781861 0.000000e+00 885
2 TraesCS5A01G366800 chr5A 100.000 398 0 0 1 398 566700292 566700689 0.000000e+00 736
3 TraesCS5A01G366800 chr5A 86.535 609 72 4 4741 5340 566734016 566734623 0.000000e+00 662
4 TraesCS5A01G366800 chr5A 90.726 496 27 11 5101 5596 566732377 566732853 1.450000e-180 643
5 TraesCS5A01G366800 chr5A 90.979 388 21 2 5644 6027 566733044 566733421 1.540000e-140 510
6 TraesCS5A01G366800 chr5A 86.726 452 38 7 5596 6027 566796019 566796468 3.350000e-132 483
7 TraesCS5A01G366800 chr5A 91.837 294 20 1 4833 5126 566795210 566795499 2.070000e-109 407
8 TraesCS5A01G366800 chr5A 89.908 327 17 7 5272 5598 566795547 566795857 2.070000e-109 407
9 TraesCS5A01G366800 chr5A 87.608 347 24 2 4771 5113 566713319 566713650 9.710000e-103 385
10 TraesCS5A01G366800 chr5A 83.744 406 41 8 5461 5854 566734658 566735050 1.640000e-95 361
11 TraesCS5A01G366800 chr5A 93.750 96 6 0 5520 5615 566782553 566782648 1.790000e-30 145
12 TraesCS5A01G366800 chr5B 91.317 2073 101 28 1444 3491 547653557 547655575 0.000000e+00 2758
13 TraesCS5A01G366800 chr5B 92.356 1609 97 14 3686 5281 547655594 547657189 0.000000e+00 2266
14 TraesCS5A01G366800 chr5B 90.677 1727 118 13 3633 5340 547808224 547809926 0.000000e+00 2257
15 TraesCS5A01G366800 chr5B 91.568 842 50 11 2652 3481 547807164 547807996 0.000000e+00 1142
16 TraesCS5A01G366800 chr5B 89.918 734 67 5 4555 5281 547823869 547824602 0.000000e+00 939
17 TraesCS5A01G366800 chr5B 88.092 655 49 13 736 1387 547652927 547653555 0.000000e+00 750
18 TraesCS5A01G366800 chr5B 87.965 565 65 3 4779 5340 547859241 547859805 0.000000e+00 664
19 TraesCS5A01G366800 chr5B 84.854 581 65 9 5461 6027 547859843 547860414 1.160000e-156 564
20 TraesCS5A01G366800 chr5B 84.929 564 49 11 5464 6015 547809963 547810502 7.050000e-149 538
21 TraesCS5A01G366800 chr5B 88.720 328 25 4 5461 5776 547824670 547824997 2.090000e-104 390
22 TraesCS5A01G366800 chr5B 87.879 330 21 9 5461 5776 547657257 547657581 2.720000e-98 370
23 TraesCS5A01G366800 chr5B 85.366 287 28 4 5737 6023 547794855 547795127 1.010000e-72 285
24 TraesCS5A01G366800 chr5B 92.800 125 9 0 710 834 547639210 547639334 1.370000e-41 182
25 TraesCS5A01G366800 chr5B 91.509 106 5 4 297 398 547652714 547652819 6.450000e-30 143
26 TraesCS5A01G366800 chr5B 82.517 143 22 2 6028 6168 547795099 547795240 8.410000e-24 122
27 TraesCS5A01G366800 chr5D 91.708 2014 116 23 713 2703 448449147 448451132 0.000000e+00 2747
28 TraesCS5A01G366800 chr5D 94.804 1559 66 8 2923 4472 448451941 448453493 0.000000e+00 2416
29 TraesCS5A01G366800 chr5D 92.058 831 59 7 4509 5334 448453488 448454316 0.000000e+00 1162
30 TraesCS5A01G366800 chr5D 79.184 735 87 31 5463 6176 448454361 448455050 3.400000e-122 449
31 TraesCS5A01G366800 chr5D 98.684 152 2 0 2701 2852 448451436 448451587 2.840000e-68 270
32 TraesCS5A01G366800 chr5D 90.303 165 12 2 235 398 448448907 448449068 4.850000e-51 213
33 TraesCS5A01G366800 chr5D 76.607 389 51 28 1 379 448370008 448370366 1.770000e-40 178
34 TraesCS5A01G366800 chr5D 90.588 85 8 0 5943 6027 448454862 448454946 5.060000e-21 113
35 TraesCS5A01G366800 chr7D 86.087 115 16 0 4603 4717 79629834 79629948 2.340000e-24 124
36 TraesCS5A01G366800 chr7D 85.047 107 16 0 4604 4710 566782912 566783018 6.550000e-20 110
37 TraesCS5A01G366800 chr7A 86.538 104 14 0 4607 4710 82510165 82510268 1.410000e-21 115
38 TraesCS5A01G366800 chrUn 84.545 110 17 0 4600 4709 3061875 3061984 6.550000e-20 110
39 TraesCS5A01G366800 chr3B 83.784 111 17 1 4599 4709 505264681 505264572 3.050000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G366800 chr5A 566700292 566706468 6176 False 5417.000000 10098 100.000000 1 6177 2 chr5A.!!$F2 6176
1 TraesCS5A01G366800 chr5A 566732377 566735050 2673 False 544.000000 662 87.996000 4741 6027 4 chr5A.!!$F3 1286
2 TraesCS5A01G366800 chr5A 566781066 566782648 1582 False 515.000000 885 90.340000 4446 5615 2 chr5A.!!$F4 1169
3 TraesCS5A01G366800 chr5A 566795210 566796468 1258 False 432.333333 483 89.490333 4833 6027 3 chr5A.!!$F5 1194
4 TraesCS5A01G366800 chr5B 547807164 547810502 3338 False 1312.333333 2257 89.058000 2652 6015 3 chr5B.!!$F4 3363
5 TraesCS5A01G366800 chr5B 547652714 547657581 4867 False 1257.400000 2758 90.230600 297 5776 5 chr5B.!!$F2 5479
6 TraesCS5A01G366800 chr5B 547823869 547824997 1128 False 664.500000 939 89.319000 4555 5776 2 chr5B.!!$F5 1221
7 TraesCS5A01G366800 chr5B 547859241 547860414 1173 False 614.000000 664 86.409500 4779 6027 2 chr5B.!!$F6 1248
8 TraesCS5A01G366800 chr5D 448448907 448455050 6143 False 1052.857143 2747 91.047000 235 6176 7 chr5D.!!$F2 5941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.183492 CACATGTGGATAGGGGGTGG 59.817 60.000 18.51 0.0 0.00 4.61 F
1011 1021 0.327924 CCACCACCATGCCTCTTACA 59.672 55.000 0.00 0.0 0.00 2.41 F
1156 1166 0.758734 CAAGGTCATATCCTCCGGCA 59.241 55.000 0.00 0.0 36.74 5.69 F
1238 1248 0.884704 CTCGGTCCCAAAGGTGTGTG 60.885 60.000 0.00 0.0 0.00 3.82 F
2907 3257 0.912006 AAAGCCCCTCCCTCACTCTC 60.912 60.000 0.00 0.0 0.00 3.20 F
3920 4639 1.000283 GCACATCCCTCTATGAGACCG 60.000 57.143 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1880 0.036577 GAAGAGCAAGCAGGCAGAGA 60.037 55.0 2.37 0.00 35.83 3.10 R
2884 3234 0.183731 GTGAGGGAGGGGCTTTATGG 59.816 60.0 0.00 0.00 0.00 2.74 R
3065 3707 0.465705 CCCTTCTGAGCTTGCCGATA 59.534 55.0 0.00 0.00 0.00 2.92 R
3067 3709 1.267574 ATCCCTTCTGAGCTTGCCGA 61.268 55.0 0.00 0.00 0.00 5.54 R
4394 5121 0.252057 TCTCTTCCGGGTCATCCACA 60.252 55.0 0.00 0.00 34.36 4.17 R
5377 6168 0.322456 GGTACCCATTCACTGCTGCA 60.322 55.0 0.00 0.88 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.963318 CTGCTTGGTCTCCCATCTTATA 57.037 45.455 0.00 0.00 41.49 0.98
22 23 5.495926 CTGCTTGGTCTCCCATCTTATAT 57.504 43.478 0.00 0.00 41.49 0.86
23 24 6.611613 CTGCTTGGTCTCCCATCTTATATA 57.388 41.667 0.00 0.00 41.49 0.86
25 26 5.843969 TGCTTGGTCTCCCATCTTATATACA 59.156 40.000 0.00 0.00 41.49 2.29
26 27 6.166982 GCTTGGTCTCCCATCTTATATACAC 58.833 44.000 0.00 0.00 41.49 2.90
27 28 5.977489 TGGTCTCCCATCTTATATACACG 57.023 43.478 0.00 0.00 35.17 4.49
28 29 5.637127 TGGTCTCCCATCTTATATACACGA 58.363 41.667 0.00 0.00 35.17 4.35
29 30 6.253758 TGGTCTCCCATCTTATATACACGAT 58.746 40.000 0.00 0.00 35.17 3.73
30 31 6.152831 TGGTCTCCCATCTTATATACACGATG 59.847 42.308 0.00 8.09 35.17 3.84
31 32 6.377429 GGTCTCCCATCTTATATACACGATGA 59.623 42.308 13.50 0.00 36.29 2.92
32 33 7.068839 GGTCTCCCATCTTATATACACGATGAT 59.931 40.741 13.50 0.00 36.29 2.45
34 35 9.121658 TCTCCCATCTTATATACACGATGATAC 57.878 37.037 13.50 0.00 36.29 2.24
37 38 9.684448 CCCATCTTATATACACGATGATACATC 57.316 37.037 13.50 0.00 36.29 3.06
38 39 9.387123 CCATCTTATATACACGATGATACATCG 57.613 37.037 25.41 25.41 46.02 3.84
50 51 7.333288 CGATGATACATCGTACTTTATTGCA 57.667 36.000 20.97 0.00 36.84 4.08
51 52 7.783209 CGATGATACATCGTACTTTATTGCAA 58.217 34.615 20.97 0.00 36.84 4.08
53 54 9.586150 GATGATACATCGTACTTTATTGCAAAG 57.414 33.333 1.71 0.00 0.00 2.77
54 55 7.406553 TGATACATCGTACTTTATTGCAAAGC 58.593 34.615 1.71 0.00 0.00 3.51
55 56 5.621197 ACATCGTACTTTATTGCAAAGCA 57.379 34.783 1.71 0.00 36.47 3.91
57 58 4.413495 TCGTACTTTATTGCAAAGCACC 57.587 40.909 1.71 0.00 38.71 5.01
59 60 3.364565 CGTACTTTATTGCAAAGCACCGT 60.365 43.478 1.71 0.00 38.71 4.83
60 61 3.282831 ACTTTATTGCAAAGCACCGTC 57.717 42.857 1.71 0.00 38.71 4.79
61 62 2.884639 ACTTTATTGCAAAGCACCGTCT 59.115 40.909 1.71 0.00 38.71 4.18
62 63 3.317993 ACTTTATTGCAAAGCACCGTCTT 59.682 39.130 1.71 0.00 38.71 3.01
63 64 4.202111 ACTTTATTGCAAAGCACCGTCTTT 60.202 37.500 1.71 0.00 38.71 2.52
68 69 2.681152 CAAAGCACCGTCTTTGTACC 57.319 50.000 11.54 0.00 44.69 3.34
70 71 1.589803 AAGCACCGTCTTTGTACCAC 58.410 50.000 0.00 0.00 0.00 4.16
71 72 0.466543 AGCACCGTCTTTGTACCACA 59.533 50.000 0.00 0.00 0.00 4.17
72 73 1.071699 AGCACCGTCTTTGTACCACAT 59.928 47.619 0.00 0.00 0.00 3.21
73 74 1.196808 GCACCGTCTTTGTACCACATG 59.803 52.381 0.00 0.00 0.00 3.21
75 76 2.223144 CACCGTCTTTGTACCACATGTG 59.777 50.000 19.31 19.31 0.00 3.21
86 87 3.806941 CACATGTGGATAGGGGGTG 57.193 57.895 18.51 0.00 0.00 4.61
87 88 0.183492 CACATGTGGATAGGGGGTGG 59.817 60.000 18.51 0.00 0.00 4.61
90 91 2.131854 CATGTGGATAGGGGGTGGTAA 58.868 52.381 0.00 0.00 0.00 2.85
91 92 1.587066 TGTGGATAGGGGGTGGTAAC 58.413 55.000 0.00 0.00 0.00 2.50
92 93 1.081513 TGTGGATAGGGGGTGGTAACT 59.918 52.381 0.00 0.00 37.61 2.24
93 94 1.767088 GTGGATAGGGGGTGGTAACTC 59.233 57.143 0.00 0.00 37.61 3.01
94 95 1.366787 TGGATAGGGGGTGGTAACTCA 59.633 52.381 0.00 0.00 37.61 3.41
95 96 2.225934 TGGATAGGGGGTGGTAACTCAA 60.226 50.000 0.00 0.00 37.61 3.02
96 97 2.848071 GGATAGGGGGTGGTAACTCAAA 59.152 50.000 0.00 0.00 37.61 2.69
97 98 3.462205 GGATAGGGGGTGGTAACTCAAAT 59.538 47.826 0.00 0.00 37.61 2.32
99 100 3.451402 AGGGGGTGGTAACTCAAATTC 57.549 47.619 0.00 0.00 37.61 2.17
100 101 2.993863 AGGGGGTGGTAACTCAAATTCT 59.006 45.455 0.00 0.00 37.61 2.40
103 104 4.508584 GGGGGTGGTAACTCAAATTCTTCT 60.509 45.833 0.00 0.00 37.61 2.85
104 105 5.077564 GGGGTGGTAACTCAAATTCTTCTT 58.922 41.667 0.00 0.00 37.61 2.52
105 106 5.183331 GGGGTGGTAACTCAAATTCTTCTTC 59.817 44.000 0.00 0.00 37.61 2.87
106 107 6.004574 GGGTGGTAACTCAAATTCTTCTTCT 58.995 40.000 0.00 0.00 37.61 2.85
108 109 7.119407 GGGTGGTAACTCAAATTCTTCTTCTAC 59.881 40.741 0.00 0.00 37.61 2.59
109 110 7.660208 GGTGGTAACTCAAATTCTTCTTCTACA 59.340 37.037 0.00 0.00 37.61 2.74
110 111 8.496751 GTGGTAACTCAAATTCTTCTTCTACAC 58.503 37.037 0.00 0.00 37.61 2.90
111 112 8.208224 TGGTAACTCAAATTCTTCTTCTACACA 58.792 33.333 0.00 0.00 37.61 3.72
114 115 7.678947 ACTCAAATTCTTCTTCTACACATGG 57.321 36.000 0.00 0.00 0.00 3.66
117 118 8.868522 TCAAATTCTTCTTCTACACATGGATT 57.131 30.769 0.00 0.00 0.00 3.01
118 119 8.733458 TCAAATTCTTCTTCTACACATGGATTG 58.267 33.333 0.00 0.00 0.00 2.67
121 122 7.854557 TTCTTCTTCTACACATGGATTGATG 57.145 36.000 0.00 0.00 0.00 3.07
123 124 8.078060 TCTTCTTCTACACATGGATTGATGTA 57.922 34.615 0.00 0.00 34.69 2.29
124 125 7.981789 TCTTCTTCTACACATGGATTGATGTAC 59.018 37.037 0.00 0.00 34.69 2.90
126 127 5.290493 TCTACACATGGATTGATGTACCC 57.710 43.478 0.00 0.00 34.69 3.69
127 128 3.297134 ACACATGGATTGATGTACCCC 57.703 47.619 0.00 0.00 34.69 4.95
129 130 3.269381 ACACATGGATTGATGTACCCCTT 59.731 43.478 0.00 0.00 34.69 3.95
130 131 3.885297 CACATGGATTGATGTACCCCTTC 59.115 47.826 0.00 0.00 34.69 3.46
131 132 3.788142 ACATGGATTGATGTACCCCTTCT 59.212 43.478 0.00 0.00 34.69 2.85
133 134 4.503714 TGGATTGATGTACCCCTTCTTC 57.496 45.455 0.00 0.00 0.00 2.87
134 135 3.849574 TGGATTGATGTACCCCTTCTTCA 59.150 43.478 0.00 0.00 0.00 3.02
135 136 4.478317 TGGATTGATGTACCCCTTCTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
136 137 4.823989 GGATTGATGTACCCCTTCTTCATG 59.176 45.833 0.00 0.00 0.00 3.07
139 140 3.199946 TGATGTACCCCTTCTTCATGTCC 59.800 47.826 0.00 0.00 0.00 4.02
142 143 2.586648 ACCCCTTCTTCATGTCCAAC 57.413 50.000 0.00 0.00 0.00 3.77
143 144 2.065799 ACCCCTTCTTCATGTCCAACT 58.934 47.619 0.00 0.00 0.00 3.16
144 145 3.256704 ACCCCTTCTTCATGTCCAACTA 58.743 45.455 0.00 0.00 0.00 2.24
145 146 3.009143 ACCCCTTCTTCATGTCCAACTAC 59.991 47.826 0.00 0.00 0.00 2.73
146 147 3.610911 CCCTTCTTCATGTCCAACTACC 58.389 50.000 0.00 0.00 0.00 3.18
147 148 3.009033 CCCTTCTTCATGTCCAACTACCA 59.991 47.826 0.00 0.00 0.00 3.25
149 150 5.256474 CCTTCTTCATGTCCAACTACCAAT 58.744 41.667 0.00 0.00 0.00 3.16
150 151 5.711976 CCTTCTTCATGTCCAACTACCAATT 59.288 40.000 0.00 0.00 0.00 2.32
151 152 6.209391 CCTTCTTCATGTCCAACTACCAATTT 59.791 38.462 0.00 0.00 0.00 1.82
152 153 7.255942 CCTTCTTCATGTCCAACTACCAATTTT 60.256 37.037 0.00 0.00 0.00 1.82
153 154 7.595819 TCTTCATGTCCAACTACCAATTTTT 57.404 32.000 0.00 0.00 0.00 1.94
154 155 7.657336 TCTTCATGTCCAACTACCAATTTTTC 58.343 34.615 0.00 0.00 0.00 2.29
155 156 6.968263 TCATGTCCAACTACCAATTTTTCA 57.032 33.333 0.00 0.00 0.00 2.69
156 157 7.537596 TCATGTCCAACTACCAATTTTTCAT 57.462 32.000 0.00 0.00 0.00 2.57
158 159 6.723298 TGTCCAACTACCAATTTTTCATGT 57.277 33.333 0.00 0.00 0.00 3.21
159 160 6.511416 TGTCCAACTACCAATTTTTCATGTG 58.489 36.000 0.00 0.00 0.00 3.21
160 161 6.322456 TGTCCAACTACCAATTTTTCATGTGA 59.678 34.615 0.00 0.00 0.00 3.58
161 162 7.147828 TGTCCAACTACCAATTTTTCATGTGAA 60.148 33.333 0.00 0.00 0.00 3.18
162 163 7.708752 GTCCAACTACCAATTTTTCATGTGAAA 59.291 33.333 4.16 4.16 41.77 2.69
163 164 7.925483 TCCAACTACCAATTTTTCATGTGAAAG 59.075 33.333 8.07 0.48 43.90 2.62
164 165 7.307337 CCAACTACCAATTTTTCATGTGAAAGC 60.307 37.037 8.07 0.00 43.90 3.51
166 167 7.271511 ACTACCAATTTTTCATGTGAAAGCAA 58.728 30.769 8.07 2.50 43.90 3.91
167 168 6.998968 ACCAATTTTTCATGTGAAAGCAAA 57.001 29.167 8.07 1.87 43.90 3.68
169 170 7.998580 ACCAATTTTTCATGTGAAAGCAAAAT 58.001 26.923 8.07 3.58 43.90 1.82
182 183 8.825745 TGTGAAAGCAAAATATTCAAAAACTCC 58.174 29.630 0.00 0.00 35.07 3.85
183 184 8.003784 GTGAAAGCAAAATATTCAAAAACTCCG 58.996 33.333 0.00 0.00 35.07 4.63
184 185 6.466308 AAGCAAAATATTCAAAAACTCCGC 57.534 33.333 0.00 0.00 0.00 5.54
185 186 4.929211 AGCAAAATATTCAAAAACTCCGCC 59.071 37.500 0.00 0.00 0.00 6.13
186 187 4.688413 GCAAAATATTCAAAAACTCCGCCA 59.312 37.500 0.00 0.00 0.00 5.69
187 188 5.178438 GCAAAATATTCAAAAACTCCGCCAA 59.822 36.000 0.00 0.00 0.00 4.52
188 189 6.293135 GCAAAATATTCAAAAACTCCGCCAAA 60.293 34.615 0.00 0.00 0.00 3.28
189 190 7.634522 CAAAATATTCAAAAACTCCGCCAAAA 58.365 30.769 0.00 0.00 0.00 2.44
191 192 7.977789 AATATTCAAAAACTCCGCCAAAAAT 57.022 28.000 0.00 0.00 0.00 1.82
192 193 7.977789 ATATTCAAAAACTCCGCCAAAAATT 57.022 28.000 0.00 0.00 0.00 1.82
193 194 6.691754 ATTCAAAAACTCCGCCAAAAATTT 57.308 29.167 0.00 0.00 0.00 1.82
194 195 7.793927 ATTCAAAAACTCCGCCAAAAATTTA 57.206 28.000 0.00 0.00 0.00 1.40
195 196 7.793927 TTCAAAAACTCCGCCAAAAATTTAT 57.206 28.000 0.00 0.00 0.00 1.40
196 197 8.888579 TTCAAAAACTCCGCCAAAAATTTATA 57.111 26.923 0.00 0.00 0.00 0.98
197 198 8.527567 TCAAAAACTCCGCCAAAAATTTATAG 57.472 30.769 0.00 0.00 0.00 1.31
198 199 8.361139 TCAAAAACTCCGCCAAAAATTTATAGA 58.639 29.630 0.00 0.00 0.00 1.98
199 200 9.150348 CAAAAACTCCGCCAAAAATTTATAGAT 57.850 29.630 0.00 0.00 0.00 1.98
200 201 8.926715 AAAACTCCGCCAAAAATTTATAGATC 57.073 30.769 0.00 0.00 0.00 2.75
201 202 6.300354 ACTCCGCCAAAAATTTATAGATCG 57.700 37.500 0.00 0.00 0.00 3.69
202 203 6.053005 ACTCCGCCAAAAATTTATAGATCGA 58.947 36.000 0.00 0.00 0.00 3.59
203 204 6.540914 ACTCCGCCAAAAATTTATAGATCGAA 59.459 34.615 0.00 0.00 0.00 3.71
204 205 7.066525 ACTCCGCCAAAAATTTATAGATCGAAA 59.933 33.333 0.00 0.00 0.00 3.46
205 206 7.763356 TCCGCCAAAAATTTATAGATCGAAAA 58.237 30.769 0.00 0.00 0.00 2.29
207 208 8.479280 CCGCCAAAAATTTATAGATCGAAAATG 58.521 33.333 0.00 0.00 0.00 2.32
216 217 8.833231 TTTATAGATCGAAAATGATCAGGTCC 57.167 34.615 0.09 0.00 45.81 4.46
217 218 4.760530 AGATCGAAAATGATCAGGTCCA 57.239 40.909 0.09 0.00 45.81 4.02
218 219 5.102953 AGATCGAAAATGATCAGGTCCAA 57.897 39.130 0.09 0.00 45.81 3.53
221 222 5.414789 TCGAAAATGATCAGGTCCAACTA 57.585 39.130 0.09 0.00 0.00 2.24
223 224 5.874810 TCGAAAATGATCAGGTCCAACTAAG 59.125 40.000 0.09 0.00 0.00 2.18
224 225 5.874810 CGAAAATGATCAGGTCCAACTAAGA 59.125 40.000 0.09 0.00 0.00 2.10
225 226 6.371548 CGAAAATGATCAGGTCCAACTAAGAA 59.628 38.462 0.09 0.00 0.00 2.52
226 227 7.094805 CGAAAATGATCAGGTCCAACTAAGAAA 60.095 37.037 0.09 0.00 0.00 2.52
227 228 8.477419 AAAATGATCAGGTCCAACTAAGAAAA 57.523 30.769 0.09 0.00 0.00 2.29
228 229 8.477419 AAATGATCAGGTCCAACTAAGAAAAA 57.523 30.769 0.09 0.00 0.00 1.94
232 233 4.522789 TCAGGTCCAACTAAGAAAAATGGC 59.477 41.667 0.00 0.00 0.00 4.40
233 234 4.524328 CAGGTCCAACTAAGAAAAATGGCT 59.476 41.667 0.00 0.00 0.00 4.75
241 242 1.345063 AGAAAAATGGCTGGCTGCTT 58.655 45.000 16.14 1.93 42.39 3.91
332 333 5.542251 TGGAAATCCCCTAAACCTCAAAAAG 59.458 40.000 0.00 0.00 34.29 2.27
336 337 2.604139 CCCTAAACCTCAAAAAGCCCA 58.396 47.619 0.00 0.00 0.00 5.36
345 348 4.140536 CCTCAAAAAGCCCATATCTCTCC 58.859 47.826 0.00 0.00 0.00 3.71
364 367 1.079750 GTCGCCCACTCTTCTCCAC 60.080 63.158 0.00 0.00 0.00 4.02
737 741 2.665185 GGTTGCTGCGACGAGGTT 60.665 61.111 13.57 0.00 0.00 3.50
772 782 2.124695 GGTCGCCCCAATCCACTC 60.125 66.667 0.00 0.00 0.00 3.51
877 887 4.733725 CCCCACCTCTTCCCCCGA 62.734 72.222 0.00 0.00 0.00 5.14
1011 1021 0.327924 CCACCACCATGCCTCTTACA 59.672 55.000 0.00 0.00 0.00 2.41
1017 1027 1.098050 CCATGCCTCTTACAACAGCC 58.902 55.000 0.00 0.00 0.00 4.85
1100 1110 4.530857 GCTACACAGGCCGGCGAT 62.531 66.667 22.54 8.99 0.00 4.58
1156 1166 0.758734 CAAGGTCATATCCTCCGGCA 59.241 55.000 0.00 0.00 36.74 5.69
1238 1248 0.884704 CTCGGTCCCAAAGGTGTGTG 60.885 60.000 0.00 0.00 0.00 3.82
1242 1252 1.886542 GGTCCCAAAGGTGTGTGATTC 59.113 52.381 0.00 0.00 0.00 2.52
1292 1302 8.727910 GGTCAGATATATCACTGTAATCGTACA 58.272 37.037 15.08 0.00 37.92 2.90
1347 1359 8.301252 TGTTTGCTATGGTGTATAGTCTAGAA 57.699 34.615 0.00 0.00 40.77 2.10
1402 1430 7.293535 TGGATTCTTTTTCCCCTTTTTATTGGA 59.706 33.333 0.00 0.00 31.87 3.53
1451 1479 1.541588 GTCAATGTTCCTGTTGAGCCC 59.458 52.381 0.00 0.00 35.22 5.19
1738 1767 2.491693 TCCAATGGATCGTTTTTGCTCC 59.508 45.455 0.00 0.00 0.00 4.70
1807 1836 7.495606 CAGTGTACTAGTGGATATTGCAAATGA 59.504 37.037 1.71 0.00 0.00 2.57
1851 1880 8.829746 TGAGATATAGGATCACCAAATTATGCT 58.170 33.333 0.00 0.00 38.94 3.79
1881 1910 5.279156 CCTGCTTGCTCTTCCTTGTTAAATT 60.279 40.000 0.00 0.00 0.00 1.82
1890 1919 7.381408 GCTCTTCCTTGTTAAATTTGTTACCAC 59.619 37.037 0.00 0.00 0.00 4.16
1942 1973 5.163109 TGTTGGGATCATATATGCCTGAACA 60.163 40.000 7.92 12.95 0.00 3.18
1985 2016 5.191426 AGTGCTATTGATTGCTGAGAACAT 58.809 37.500 0.00 0.00 0.00 2.71
2083 2114 3.115390 TGCCAAGGCTATAGAACTTCCT 58.885 45.455 12.96 0.00 42.51 3.36
2128 2159 4.832248 CCATGCTACTTCAAGAGGTACAA 58.168 43.478 0.00 0.00 0.00 2.41
2400 2431 1.831736 CCCGTGAGTACAAAGGAGGAT 59.168 52.381 0.00 0.00 0.00 3.24
2490 2521 3.391296 TGGAGAAGCAACTACTGGACTTT 59.609 43.478 0.00 0.00 0.00 2.66
2545 2576 7.593825 ACTAAGCAAAAATGGTGTATGTTCTC 58.406 34.615 0.00 0.00 0.00 2.87
2550 2581 8.893727 AGCAAAAATGGTGTATGTTCTCTATAC 58.106 33.333 0.00 0.00 0.00 1.47
2597 2628 9.090692 CAAATTTGAAGTAATAAAGGGATGCAG 57.909 33.333 13.08 0.00 0.00 4.41
2616 2649 4.341806 TGCAGACCATCATGTTGTCTTTTT 59.658 37.500 10.43 0.00 37.25 1.94
2626 2659 8.918658 CATCATGTTGTCTTTTTATTTCTGTGG 58.081 33.333 0.00 0.00 0.00 4.17
2628 2661 8.134895 TCATGTTGTCTTTTTATTTCTGTGGAC 58.865 33.333 0.00 0.00 0.00 4.02
2634 2667 8.352201 TGTCTTTTTATTTCTGTGGACATTCTG 58.648 33.333 0.00 0.00 0.00 3.02
2665 2705 5.030295 GGAATGAAATACGCACACATTCAG 58.970 41.667 16.21 0.00 44.55 3.02
2668 2708 5.029650 TGAAATACGCACACATTCAGTTC 57.970 39.130 0.00 0.00 0.00 3.01
2884 3234 5.594317 AGGAATGAAGGTACATTTATGTGGC 59.406 40.000 5.64 0.00 41.89 5.01
2900 3250 3.346870 GCCATAAAGCCCCTCCCT 58.653 61.111 0.00 0.00 0.00 4.20
2902 3252 1.645402 GCCATAAAGCCCCTCCCTCA 61.645 60.000 0.00 0.00 0.00 3.86
2904 3254 1.216990 CATAAAGCCCCTCCCTCACT 58.783 55.000 0.00 0.00 0.00 3.41
2907 3257 0.912006 AAAGCCCCTCCCTCACTCTC 60.912 60.000 0.00 0.00 0.00 3.20
2910 3260 1.950748 GCCCCTCCCTCACTCTCCTA 61.951 65.000 0.00 0.00 0.00 2.94
2912 3262 1.482177 CCCCTCCCTCACTCTCCTATG 60.482 61.905 0.00 0.00 0.00 2.23
2915 3265 2.238521 CTCCCTCACTCTCCTATGAGC 58.761 57.143 0.00 0.00 40.92 4.26
2967 3600 3.186909 CAACAAAGCATGGCATCATCTG 58.813 45.455 0.00 0.00 0.00 2.90
3030 3672 8.574196 AACATTCCAAAAAGTTAACAATCTCG 57.426 30.769 8.61 0.00 0.00 4.04
3083 3725 2.540265 ATATCGGCAAGCTCAGAAGG 57.460 50.000 0.00 0.00 0.00 3.46
3094 3736 6.072230 GGCAAGCTCAGAAGGGATAATTATTC 60.072 42.308 0.00 0.00 0.00 1.75
3321 3963 1.138047 CGCATTCGGTGTACTCGACC 61.138 60.000 10.49 1.59 36.30 4.79
3405 4047 5.762711 GGGAGATGAAAAGAAGGCTATTCTC 59.237 44.000 5.39 0.00 0.00 2.87
3460 4102 7.442656 TGTAGATTTACTATTGCTAAGCTCCC 58.557 38.462 0.00 0.00 33.39 4.30
3542 4184 8.175069 GTCTTTATCGTTTGTGATATCTTTGCA 58.825 33.333 3.98 0.00 31.24 4.08
3545 4187 6.932356 ATCGTTTGTGATATCTTTGCAGAT 57.068 33.333 3.98 0.65 42.83 2.90
3605 4247 8.872845 CATACATTTTTATCAGTTGCTTTTCCC 58.127 33.333 0.00 0.00 0.00 3.97
3617 4259 5.420104 AGTTGCTTTTCCCCTCTAATGAATG 59.580 40.000 0.00 0.00 0.00 2.67
3770 4489 3.385111 GTGCCTGACTACAGCCTAAGTAT 59.615 47.826 0.00 0.00 42.25 2.12
3920 4639 1.000283 GCACATCCCTCTATGAGACCG 60.000 57.143 0.00 0.00 0.00 4.79
3983 4702 3.055530 AGGAGACAACAAGTGCCTATCTG 60.056 47.826 0.00 0.00 31.71 2.90
4050 4769 2.160417 GCAGTTATCAAGGTGTGTGAGC 59.840 50.000 0.00 0.00 0.00 4.26
4086 4812 7.490000 ACTACCTACATTCCAATAGTTCTTCG 58.510 38.462 0.00 0.00 0.00 3.79
4140 4866 8.288208 GCAATCATTACATAGAGTTTCAGGATG 58.712 37.037 0.00 0.00 37.54 3.51
4176 4902 6.897259 ATGCAGAAATCATTGTAATTGTGC 57.103 33.333 0.00 11.19 31.90 4.57
4197 4924 6.071616 TGTGCTATTAAATTTGTCCCCTGTTC 60.072 38.462 0.00 0.00 0.00 3.18
4271 4998 3.558746 CCACTGAAGCTGAACTTGAGGAT 60.559 47.826 0.00 0.00 43.28 3.24
4379 5106 5.769662 TGTTGAACTGTCAAAGCATATTCCT 59.230 36.000 0.00 0.00 45.29 3.36
4394 5121 8.621126 AGCATATTCCTAGTATCATGGATCTT 57.379 34.615 0.00 0.00 0.00 2.40
4426 5153 3.933332 CCGGAAGAGAAGATTGGTGTAAC 59.067 47.826 0.00 0.00 0.00 2.50
4436 5163 5.772393 AGATTGGTGTAACTATTGTGGGA 57.228 39.130 0.00 0.00 36.74 4.37
4546 5285 2.354906 GGTTGCCCAATCATTGCATTCA 60.355 45.455 0.00 0.00 34.51 2.57
4568 5307 4.072131 ACCGCTGATTTTGTGTAAGATGT 58.928 39.130 0.00 0.00 0.00 3.06
4611 5354 7.914427 ACATCATAACTAAGATACACCCTCA 57.086 36.000 0.00 0.00 0.00 3.86
4617 5360 6.980416 AACTAAGATACACCCTCAGATACC 57.020 41.667 0.00 0.00 0.00 2.73
4619 5362 6.071984 ACTAAGATACACCCTCAGATACCTG 58.928 44.000 0.00 0.00 41.74 4.00
4627 5370 3.197983 ACCCTCAGATACCTGTTAGTTGC 59.802 47.826 0.00 0.00 41.16 4.17
4634 5377 0.320771 ACCTGTTAGTTGCCGCTCAG 60.321 55.000 0.00 0.00 0.00 3.35
4636 5379 1.406069 CCTGTTAGTTGCCGCTCAGAT 60.406 52.381 0.00 0.00 0.00 2.90
4681 5424 4.639310 ACGTCTAGATACATCCGTTTCAGT 59.361 41.667 0.00 0.00 0.00 3.41
4690 5434 5.862924 ACATCCGTTTCAGTGACAATTAG 57.137 39.130 0.00 0.00 0.00 1.73
4693 5437 6.367969 ACATCCGTTTCAGTGACAATTAGTAC 59.632 38.462 0.00 0.00 0.00 2.73
4694 5438 5.232463 TCCGTTTCAGTGACAATTAGTACC 58.768 41.667 0.00 0.00 0.00 3.34
4711 5457 7.756395 TTAGTACCAATCGAAGGGAGTATAG 57.244 40.000 12.21 0.00 0.00 1.31
4806 5553 8.557029 AGCACTTGTAACACTTTTGTACTTATC 58.443 33.333 0.00 0.00 33.55 1.75
4818 5565 9.855021 ACTTTTGTACTTATCCAAATTACATGC 57.145 29.630 0.00 0.00 31.20 4.06
4842 5589 6.420306 GCATCTATCGCATATCATCCTAACTG 59.580 42.308 0.00 0.00 0.00 3.16
4844 5591 8.624776 CATCTATCGCATATCATCCTAACTGTA 58.375 37.037 0.00 0.00 0.00 2.74
5201 5971 6.258947 GGTCTGAGCAATTCTTATCCTGTTAC 59.741 42.308 1.28 0.00 0.00 2.50
5213 5983 7.523415 TCTTATCCTGTTACCAAAGAAGGTTT 58.477 34.615 0.00 0.00 43.08 3.27
5260 6030 1.872679 GCTAAGAACGGAGTCGGCG 60.873 63.158 0.00 0.00 45.00 6.46
5345 6136 3.253838 GTGGGGGTGGGTACAGCA 61.254 66.667 0.00 0.00 46.66 4.41
5363 6154 2.226912 AGCACTTCTCACGAGTGTCTAC 59.773 50.000 2.97 0.00 44.88 2.59
5364 6155 2.031069 GCACTTCTCACGAGTGTCTACA 60.031 50.000 2.97 0.00 44.88 2.74
5365 6156 3.816091 CACTTCTCACGAGTGTCTACAG 58.184 50.000 2.97 0.00 39.66 2.74
5366 6157 2.226912 ACTTCTCACGAGTGTCTACAGC 59.773 50.000 2.97 0.00 0.00 4.40
5367 6158 1.892209 TCTCACGAGTGTCTACAGCA 58.108 50.000 2.97 0.00 0.00 4.41
5368 6159 1.807142 TCTCACGAGTGTCTACAGCAG 59.193 52.381 2.97 0.00 0.00 4.24
5370 6161 1.266989 TCACGAGTGTCTACAGCAGTG 59.733 52.381 2.97 5.79 0.00 3.66
5372 6163 2.095008 CACGAGTGTCTACAGCAGTGAT 60.095 50.000 0.00 0.00 0.00 3.06
5373 6164 2.558795 ACGAGTGTCTACAGCAGTGATT 59.441 45.455 0.00 0.00 0.00 2.57
5374 6165 2.919859 CGAGTGTCTACAGCAGTGATTG 59.080 50.000 0.00 0.00 0.00 2.67
5375 6166 3.612717 CGAGTGTCTACAGCAGTGATTGT 60.613 47.826 0.00 0.00 0.00 2.71
5377 6168 3.576118 AGTGTCTACAGCAGTGATTGTCT 59.424 43.478 0.00 0.00 0.00 3.41
5378 6169 3.677121 GTGTCTACAGCAGTGATTGTCTG 59.323 47.826 0.00 0.00 37.14 3.51
5388 6179 1.875514 GTGATTGTCTGCAGCAGTGAA 59.124 47.619 22.10 15.37 32.61 3.18
5433 6226 3.492102 AGTAGGCTTGCTCTGTTTTCA 57.508 42.857 0.00 0.00 0.00 2.69
5599 6985 8.574251 TCATACCTGCACAATATTTTTGTAGT 57.426 30.769 9.67 2.94 0.00 2.73
5634 7022 4.623932 TGATTACAGTGGCAGAACTTCT 57.376 40.909 0.00 0.00 0.00 2.85
5717 7116 7.986889 GGCCCTTTGTTTGATACATAATGAAAT 59.013 33.333 0.00 0.00 36.44 2.17
5810 7222 2.680370 GGGGTAGTTGGGCAGGGAG 61.680 68.421 0.00 0.00 0.00 4.30
5813 7225 0.404426 GGTAGTTGGGCAGGGAGTTT 59.596 55.000 0.00 0.00 0.00 2.66
5854 7266 4.014406 TGTATCATGTCGTCTGTACCAGT 58.986 43.478 0.00 0.00 32.61 4.00
5860 7273 4.859304 TGTCGTCTGTACCAGTTTGTAT 57.141 40.909 0.00 0.00 32.61 2.29
5867 7287 5.049680 GTCTGTACCAGTTTGTATTGGTGTG 60.050 44.000 6.43 0.00 46.74 3.82
5884 7305 5.477510 TGGTGTGATGTGCAATATTTTTCC 58.522 37.500 0.00 0.00 0.00 3.13
5901 7322 5.782893 TTTTCCTATATGCCGGATTTTGG 57.217 39.130 5.05 0.00 0.00 3.28
5938 7359 9.630098 GGATAACTGGCATGTTATATTGATTTG 57.370 33.333 16.81 0.00 41.52 2.32
5945 7397 8.089597 TGGCATGTTATATTGATTTGCTTATGG 58.910 33.333 0.00 0.00 0.00 2.74
6007 7460 2.408333 GCAGTGTGTTGCCTCTTGT 58.592 52.632 0.00 0.00 38.13 3.16
6008 7461 0.740737 GCAGTGTGTTGCCTCTTGTT 59.259 50.000 0.00 0.00 38.13 2.83
6009 7462 1.134946 GCAGTGTGTTGCCTCTTGTTT 59.865 47.619 0.00 0.00 38.13 2.83
6010 7463 2.801063 CAGTGTGTTGCCTCTTGTTTG 58.199 47.619 0.00 0.00 0.00 2.93
6011 7464 2.423185 CAGTGTGTTGCCTCTTGTTTGA 59.577 45.455 0.00 0.00 0.00 2.69
6012 7465 3.067180 CAGTGTGTTGCCTCTTGTTTGAT 59.933 43.478 0.00 0.00 0.00 2.57
6013 7466 4.275689 CAGTGTGTTGCCTCTTGTTTGATA 59.724 41.667 0.00 0.00 0.00 2.15
6014 7467 4.275936 AGTGTGTTGCCTCTTGTTTGATAC 59.724 41.667 0.00 0.00 0.00 2.24
6015 7468 3.568007 TGTGTTGCCTCTTGTTTGATACC 59.432 43.478 0.00 0.00 0.00 2.73
6016 7469 3.821033 GTGTTGCCTCTTGTTTGATACCT 59.179 43.478 0.00 0.00 0.00 3.08
6017 7470 3.820467 TGTTGCCTCTTGTTTGATACCTG 59.180 43.478 0.00 0.00 0.00 4.00
6018 7471 4.072131 GTTGCCTCTTGTTTGATACCTGA 58.928 43.478 0.00 0.00 0.00 3.86
6019 7472 3.674997 TGCCTCTTGTTTGATACCTGAC 58.325 45.455 0.00 0.00 0.00 3.51
6020 7473 3.072330 TGCCTCTTGTTTGATACCTGACA 59.928 43.478 0.00 0.00 0.00 3.58
6021 7474 4.072131 GCCTCTTGTTTGATACCTGACAA 58.928 43.478 0.00 0.00 0.00 3.18
6022 7475 4.518970 GCCTCTTGTTTGATACCTGACAAA 59.481 41.667 0.00 0.00 32.25 2.83
6023 7476 5.183904 GCCTCTTGTTTGATACCTGACAAAT 59.816 40.000 0.00 0.00 38.09 2.32
6024 7477 6.615088 CCTCTTGTTTGATACCTGACAAATG 58.385 40.000 0.00 0.00 38.09 2.32
6025 7478 6.207417 CCTCTTGTTTGATACCTGACAAATGT 59.793 38.462 0.00 0.00 38.09 2.71
6026 7479 6.969366 TCTTGTTTGATACCTGACAAATGTG 58.031 36.000 0.00 0.00 38.09 3.21
6027 7480 5.703978 TGTTTGATACCTGACAAATGTGG 57.296 39.130 0.00 0.00 38.09 4.17
6028 7481 5.136828 TGTTTGATACCTGACAAATGTGGT 58.863 37.500 0.00 0.00 38.09 4.16
6029 7482 5.009510 TGTTTGATACCTGACAAATGTGGTG 59.990 40.000 5.97 0.00 38.09 4.17
6030 7483 4.365514 TGATACCTGACAAATGTGGTGT 57.634 40.909 5.97 0.08 34.33 4.16
6031 7484 4.724399 TGATACCTGACAAATGTGGTGTT 58.276 39.130 5.97 0.00 34.33 3.32
6032 7485 4.518590 TGATACCTGACAAATGTGGTGTTG 59.481 41.667 5.97 0.00 34.33 3.33
6033 7486 1.408702 ACCTGACAAATGTGGTGTTGC 59.591 47.619 0.00 0.00 0.00 4.17
6034 7487 1.269726 CCTGACAAATGTGGTGTTGCC 60.270 52.381 0.00 0.00 37.90 4.52
6035 7488 1.682854 CTGACAAATGTGGTGTTGCCT 59.317 47.619 0.00 0.00 38.35 4.75
6036 7489 1.680735 TGACAAATGTGGTGTTGCCTC 59.319 47.619 0.00 0.00 38.35 4.70
6037 7490 1.956477 GACAAATGTGGTGTTGCCTCT 59.044 47.619 0.00 0.00 38.35 3.69
6038 7491 2.362077 GACAAATGTGGTGTTGCCTCTT 59.638 45.455 0.00 0.00 38.35 2.85
6039 7492 2.101249 ACAAATGTGGTGTTGCCTCTTG 59.899 45.455 0.00 0.00 38.35 3.02
6040 7493 2.071778 AATGTGGTGTTGCCTCTTGT 57.928 45.000 0.00 0.00 38.35 3.16
6062 7515 9.180678 CTTGTTTGATACCTAACAAATGTGAAC 57.819 33.333 0.00 0.00 43.53 3.18
6072 7525 7.874016 ACCTAACAAATGTGAACTATACGAACA 59.126 33.333 0.00 0.00 0.00 3.18
6073 7526 8.166706 CCTAACAAATGTGAACTATACGAACAC 58.833 37.037 0.00 0.00 0.00 3.32
6074 7527 7.724305 AACAAATGTGAACTATACGAACACT 57.276 32.000 0.00 0.00 33.41 3.55
6075 7528 8.821147 AACAAATGTGAACTATACGAACACTA 57.179 30.769 0.00 0.00 33.41 2.74
6076 7529 8.236084 ACAAATGTGAACTATACGAACACTAC 57.764 34.615 0.00 0.00 33.41 2.73
6077 7530 7.868922 ACAAATGTGAACTATACGAACACTACA 59.131 33.333 0.00 0.00 33.41 2.74
6078 7531 8.869897 CAAATGTGAACTATACGAACACTACAT 58.130 33.333 0.00 0.00 33.41 2.29
6079 7532 7.987268 ATGTGAACTATACGAACACTACATG 57.013 36.000 0.00 0.00 33.41 3.21
6080 7533 6.916440 TGTGAACTATACGAACACTACATGT 58.084 36.000 2.69 2.69 46.42 3.21
6100 7553 6.708949 ACATGTGTACTATTTTCTGTTTCGGT 59.291 34.615 0.00 0.00 0.00 4.69
6101 7554 7.874016 ACATGTGTACTATTTTCTGTTTCGGTA 59.126 33.333 0.00 0.00 0.00 4.02
6115 7568 5.948588 TGTTTCGGTATTGATGTCAAATGG 58.051 37.500 0.00 0.00 39.55 3.16
6125 7578 9.935682 GTATTGATGTCAAATGGTAGTGTAATG 57.064 33.333 0.00 0.00 39.55 1.90
6131 7584 3.620427 AATGGTAGTGTAATGTCCGCA 57.380 42.857 0.00 0.00 0.00 5.69
6132 7585 2.373540 TGGTAGTGTAATGTCCGCAC 57.626 50.000 0.00 0.00 0.00 5.34
6144 7597 0.109272 GTCCGCACTGAACGATCTCA 60.109 55.000 0.00 0.00 0.00 3.27
6145 7598 0.171231 TCCGCACTGAACGATCTCAG 59.829 55.000 9.77 9.77 46.94 3.35
6147 7600 1.263776 CGCACTGAACGATCTCAGAC 58.736 55.000 16.58 8.59 44.82 3.51
6154 7609 1.400846 GAACGATCTCAGACGGTAGCA 59.599 52.381 0.00 0.00 0.00 3.49
6158 7613 3.821600 ACGATCTCAGACGGTAGCATAAT 59.178 43.478 0.00 0.00 0.00 1.28
6168 7623 7.664318 TCAGACGGTAGCATAATCTGATTACTA 59.336 37.037 12.04 7.71 40.59 1.82
6170 7625 7.447545 AGACGGTAGCATAATCTGATTACTACA 59.552 37.037 24.56 6.45 31.26 2.74
6171 7626 7.368833 ACGGTAGCATAATCTGATTACTACAC 58.631 38.462 24.56 17.78 31.26 2.90
6172 7627 7.230913 ACGGTAGCATAATCTGATTACTACACT 59.769 37.037 24.56 15.76 31.26 3.55
6173 7628 8.082852 CGGTAGCATAATCTGATTACTACACTT 58.917 37.037 24.56 6.23 31.26 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.392494 TCATCGTGTATATAAGATGGGAGAC 57.608 40.000 19.79 0.00 40.43 3.36
8 9 9.121658 GTATCATCGTGTATATAAGATGGGAGA 57.878 37.037 19.79 6.36 40.43 3.71
9 10 8.903820 TGTATCATCGTGTATATAAGATGGGAG 58.096 37.037 19.79 1.44 40.43 4.30
10 11 8.817092 TGTATCATCGTGTATATAAGATGGGA 57.183 34.615 19.79 9.50 40.43 4.37
11 12 9.684448 GATGTATCATCGTGTATATAAGATGGG 57.316 37.037 19.79 2.29 40.43 4.00
12 13 9.387123 CGATGTATCATCGTGTATATAAGATGG 57.613 37.037 19.79 6.90 40.43 3.51
26 27 7.333288 TGCAATAAAGTACGATGTATCATCG 57.667 36.000 24.10 24.10 46.02 3.84
27 28 9.586150 CTTTGCAATAAAGTACGATGTATCATC 57.414 33.333 0.00 0.25 0.00 2.92
28 29 8.070171 GCTTTGCAATAAAGTACGATGTATCAT 58.930 33.333 0.00 0.00 0.00 2.45
29 30 7.065204 TGCTTTGCAATAAAGTACGATGTATCA 59.935 33.333 0.00 0.00 34.76 2.15
30 31 7.373441 GTGCTTTGCAATAAAGTACGATGTATC 59.627 37.037 0.00 0.00 41.47 2.24
31 32 7.186804 GTGCTTTGCAATAAAGTACGATGTAT 58.813 34.615 0.00 0.00 41.47 2.29
32 33 6.402766 GGTGCTTTGCAATAAAGTACGATGTA 60.403 38.462 0.00 0.00 41.47 2.29
34 35 4.793216 GGTGCTTTGCAATAAAGTACGATG 59.207 41.667 0.00 0.00 41.47 3.84
37 38 3.160545 CGGTGCTTTGCAATAAAGTACG 58.839 45.455 0.00 0.00 41.47 3.67
38 39 4.083484 AGACGGTGCTTTGCAATAAAGTAC 60.083 41.667 0.00 4.55 41.47 2.73
39 40 4.069304 AGACGGTGCTTTGCAATAAAGTA 58.931 39.130 0.00 0.00 41.47 2.24
41 42 3.559238 AGACGGTGCTTTGCAATAAAG 57.441 42.857 0.00 0.00 41.47 1.85
42 43 4.047822 CAAAGACGGTGCTTTGCAATAAA 58.952 39.130 0.00 0.00 45.52 1.40
43 44 3.637432 CAAAGACGGTGCTTTGCAATAA 58.363 40.909 0.00 0.00 45.52 1.40
44 45 3.281341 CAAAGACGGTGCTTTGCAATA 57.719 42.857 0.00 0.00 45.52 1.90
45 46 2.138596 CAAAGACGGTGCTTTGCAAT 57.861 45.000 0.00 0.00 45.52 3.56
50 51 1.944709 GTGGTACAAAGACGGTGCTTT 59.055 47.619 0.00 0.00 44.16 3.51
51 52 1.134340 TGTGGTACAAAGACGGTGCTT 60.134 47.619 0.00 0.00 44.16 3.91
53 54 1.196808 CATGTGGTACAAAGACGGTGC 59.803 52.381 0.00 0.00 44.16 5.01
54 55 2.223144 CACATGTGGTACAAAGACGGTG 59.777 50.000 18.51 0.00 44.16 4.94
55 56 2.489971 CACATGTGGTACAAAGACGGT 58.510 47.619 18.51 0.00 44.16 4.83
68 69 0.183492 CCACCCCCTATCCACATGTG 59.817 60.000 19.31 19.31 0.00 3.21
70 71 1.814429 TACCACCCCCTATCCACATG 58.186 55.000 0.00 0.00 0.00 3.21
71 72 2.132686 GTTACCACCCCCTATCCACAT 58.867 52.381 0.00 0.00 0.00 3.21
72 73 1.081513 AGTTACCACCCCCTATCCACA 59.918 52.381 0.00 0.00 0.00 4.17
73 74 1.767088 GAGTTACCACCCCCTATCCAC 59.233 57.143 0.00 0.00 0.00 4.02
75 76 2.185663 TGAGTTACCACCCCCTATCC 57.814 55.000 0.00 0.00 0.00 2.59
77 78 4.794067 AGAATTTGAGTTACCACCCCCTAT 59.206 41.667 0.00 0.00 0.00 2.57
79 80 2.993863 AGAATTTGAGTTACCACCCCCT 59.006 45.455 0.00 0.00 0.00 4.79
80 81 3.451402 AGAATTTGAGTTACCACCCCC 57.549 47.619 0.00 0.00 0.00 5.40
82 83 6.004574 AGAAGAAGAATTTGAGTTACCACCC 58.995 40.000 0.00 0.00 0.00 4.61
84 85 8.496751 GTGTAGAAGAAGAATTTGAGTTACCAC 58.503 37.037 0.00 0.00 0.00 4.16
85 86 8.208224 TGTGTAGAAGAAGAATTTGAGTTACCA 58.792 33.333 0.00 0.00 0.00 3.25
86 87 8.603242 TGTGTAGAAGAAGAATTTGAGTTACC 57.397 34.615 0.00 0.00 0.00 2.85
90 91 7.453393 TCCATGTGTAGAAGAAGAATTTGAGT 58.547 34.615 0.00 0.00 0.00 3.41
91 92 7.912056 TCCATGTGTAGAAGAAGAATTTGAG 57.088 36.000 0.00 0.00 0.00 3.02
92 93 8.733458 CAATCCATGTGTAGAAGAAGAATTTGA 58.267 33.333 0.00 0.00 0.00 2.69
93 94 8.733458 TCAATCCATGTGTAGAAGAAGAATTTG 58.267 33.333 0.00 0.00 0.00 2.32
94 95 8.868522 TCAATCCATGTGTAGAAGAAGAATTT 57.131 30.769 0.00 0.00 0.00 1.82
95 96 8.900781 CATCAATCCATGTGTAGAAGAAGAATT 58.099 33.333 0.00 0.00 0.00 2.17
96 97 8.051535 ACATCAATCCATGTGTAGAAGAAGAAT 58.948 33.333 0.00 0.00 35.57 2.40
97 98 7.397221 ACATCAATCCATGTGTAGAAGAAGAA 58.603 34.615 0.00 0.00 35.57 2.52
99 100 7.225538 GGTACATCAATCCATGTGTAGAAGAAG 59.774 40.741 0.00 0.00 37.57 2.85
100 101 7.047891 GGTACATCAATCCATGTGTAGAAGAA 58.952 38.462 0.00 0.00 37.57 2.52
103 104 5.397447 GGGGTACATCAATCCATGTGTAGAA 60.397 44.000 0.00 0.00 37.57 2.10
104 105 4.102524 GGGGTACATCAATCCATGTGTAGA 59.897 45.833 0.00 0.00 37.57 2.59
105 106 4.103153 AGGGGTACATCAATCCATGTGTAG 59.897 45.833 0.00 0.00 37.57 2.74
106 107 4.044308 AGGGGTACATCAATCCATGTGTA 58.956 43.478 0.00 0.00 37.57 2.90
108 109 3.582998 AGGGGTACATCAATCCATGTG 57.417 47.619 0.00 0.00 37.57 3.21
109 110 3.788142 AGAAGGGGTACATCAATCCATGT 59.212 43.478 0.00 0.00 40.28 3.21
110 111 4.443978 AGAAGGGGTACATCAATCCATG 57.556 45.455 0.00 0.00 0.00 3.66
111 112 4.478317 TGAAGAAGGGGTACATCAATCCAT 59.522 41.667 0.00 0.00 0.00 3.41
113 114 4.503714 TGAAGAAGGGGTACATCAATCC 57.496 45.455 0.00 0.00 0.00 3.01
114 115 5.440610 ACATGAAGAAGGGGTACATCAATC 58.559 41.667 0.00 0.00 0.00 2.67
117 118 3.199946 GGACATGAAGAAGGGGTACATCA 59.800 47.826 0.00 0.00 0.00 3.07
118 119 3.199946 TGGACATGAAGAAGGGGTACATC 59.800 47.826 0.00 0.00 0.00 3.06
121 122 3.009143 AGTTGGACATGAAGAAGGGGTAC 59.991 47.826 0.00 0.00 0.00 3.34
123 124 2.065799 AGTTGGACATGAAGAAGGGGT 58.934 47.619 0.00 0.00 0.00 4.95
124 125 2.887151 AGTTGGACATGAAGAAGGGG 57.113 50.000 0.00 0.00 0.00 4.79
126 127 4.286297 TGGTAGTTGGACATGAAGAAGG 57.714 45.455 0.00 0.00 0.00 3.46
127 128 6.824305 AATTGGTAGTTGGACATGAAGAAG 57.176 37.500 0.00 0.00 0.00 2.85
129 130 7.286546 TGAAAAATTGGTAGTTGGACATGAAGA 59.713 33.333 0.00 0.00 0.00 2.87
130 131 7.432869 TGAAAAATTGGTAGTTGGACATGAAG 58.567 34.615 0.00 0.00 0.00 3.02
131 132 7.353414 TGAAAAATTGGTAGTTGGACATGAA 57.647 32.000 0.00 0.00 0.00 2.57
133 134 7.116662 CACATGAAAAATTGGTAGTTGGACATG 59.883 37.037 0.00 0.00 37.06 3.21
134 135 7.015098 TCACATGAAAAATTGGTAGTTGGACAT 59.985 33.333 0.00 0.00 0.00 3.06
135 136 6.322456 TCACATGAAAAATTGGTAGTTGGACA 59.678 34.615 0.00 0.00 0.00 4.02
136 137 6.744112 TCACATGAAAAATTGGTAGTTGGAC 58.256 36.000 0.00 0.00 0.00 4.02
139 140 7.224362 TGCTTTCACATGAAAAATTGGTAGTTG 59.776 33.333 8.33 0.00 42.72 3.16
142 143 7.712264 TTGCTTTCACATGAAAAATTGGTAG 57.288 32.000 8.33 0.00 42.72 3.18
143 144 8.498054 TTTTGCTTTCACATGAAAAATTGGTA 57.502 26.923 8.33 0.00 42.72 3.25
144 145 6.998968 TTTGCTTTCACATGAAAAATTGGT 57.001 29.167 8.33 0.00 42.72 3.67
156 157 8.825745 GGAGTTTTTGAATATTTTGCTTTCACA 58.174 29.630 0.00 0.00 0.00 3.58
158 159 7.307101 GCGGAGTTTTTGAATATTTTGCTTTCA 60.307 33.333 0.00 0.00 0.00 2.69
159 160 7.009440 GCGGAGTTTTTGAATATTTTGCTTTC 58.991 34.615 0.00 0.00 0.00 2.62
160 161 6.073276 GGCGGAGTTTTTGAATATTTTGCTTT 60.073 34.615 0.00 0.00 0.00 3.51
161 162 5.408299 GGCGGAGTTTTTGAATATTTTGCTT 59.592 36.000 0.00 0.00 0.00 3.91
162 163 4.929211 GGCGGAGTTTTTGAATATTTTGCT 59.071 37.500 0.00 0.00 0.00 3.91
163 164 4.688413 TGGCGGAGTTTTTGAATATTTTGC 59.312 37.500 0.00 0.00 0.00 3.68
164 165 6.777526 TTGGCGGAGTTTTTGAATATTTTG 57.222 33.333 0.00 0.00 0.00 2.44
166 167 7.793927 TTTTTGGCGGAGTTTTTGAATATTT 57.206 28.000 0.00 0.00 0.00 1.40
167 168 7.977789 ATTTTTGGCGGAGTTTTTGAATATT 57.022 28.000 0.00 0.00 0.00 1.28
169 170 7.793927 AAATTTTTGGCGGAGTTTTTGAATA 57.206 28.000 0.00 0.00 0.00 1.75
171 172 7.793927 ATAAATTTTTGGCGGAGTTTTTGAA 57.206 28.000 0.00 0.00 0.00 2.69
172 173 8.361139 TCTATAAATTTTTGGCGGAGTTTTTGA 58.639 29.630 0.00 0.00 0.00 2.69
173 174 8.527567 TCTATAAATTTTTGGCGGAGTTTTTG 57.472 30.769 0.00 0.00 0.00 2.44
174 175 9.366216 GATCTATAAATTTTTGGCGGAGTTTTT 57.634 29.630 0.00 0.00 0.00 1.94
175 176 7.700656 CGATCTATAAATTTTTGGCGGAGTTTT 59.299 33.333 0.00 0.00 0.00 2.43
176 177 7.066525 TCGATCTATAAATTTTTGGCGGAGTTT 59.933 33.333 0.00 0.00 0.00 2.66
177 178 6.540914 TCGATCTATAAATTTTTGGCGGAGTT 59.459 34.615 0.00 0.00 0.00 3.01
178 179 6.053005 TCGATCTATAAATTTTTGGCGGAGT 58.947 36.000 0.00 0.00 0.00 3.85
180 181 6.928979 TTCGATCTATAAATTTTTGGCGGA 57.071 33.333 0.00 0.00 0.00 5.54
182 183 9.232082 TCATTTTCGATCTATAAATTTTTGGCG 57.768 29.630 0.00 0.00 0.00 5.69
191 192 8.428852 TGGACCTGATCATTTTCGATCTATAAA 58.571 33.333 0.00 0.00 42.01 1.40
192 193 7.962441 TGGACCTGATCATTTTCGATCTATAA 58.038 34.615 0.00 0.00 42.01 0.98
193 194 7.539034 TGGACCTGATCATTTTCGATCTATA 57.461 36.000 0.00 0.00 42.01 1.31
194 195 6.425210 TGGACCTGATCATTTTCGATCTAT 57.575 37.500 0.00 0.00 42.01 1.98
195 196 5.869649 TGGACCTGATCATTTTCGATCTA 57.130 39.130 0.00 0.00 42.01 1.98
196 197 4.760530 TGGACCTGATCATTTTCGATCT 57.239 40.909 0.00 0.00 42.01 2.75
197 198 4.878397 AGTTGGACCTGATCATTTTCGATC 59.122 41.667 0.00 0.00 41.88 3.69
198 199 4.848357 AGTTGGACCTGATCATTTTCGAT 58.152 39.130 0.00 0.00 0.00 3.59
199 200 4.286297 AGTTGGACCTGATCATTTTCGA 57.714 40.909 0.00 0.00 0.00 3.71
200 201 5.874810 TCTTAGTTGGACCTGATCATTTTCG 59.125 40.000 0.00 0.00 0.00 3.46
201 202 7.687941 TTCTTAGTTGGACCTGATCATTTTC 57.312 36.000 0.00 0.00 0.00 2.29
202 203 8.477419 TTTTCTTAGTTGGACCTGATCATTTT 57.523 30.769 0.00 0.00 0.00 1.82
203 204 8.477419 TTTTTCTTAGTTGGACCTGATCATTT 57.523 30.769 0.00 0.00 0.00 2.32
204 205 8.526147 CATTTTTCTTAGTTGGACCTGATCATT 58.474 33.333 0.00 0.00 0.00 2.57
205 206 7.123247 CCATTTTTCTTAGTTGGACCTGATCAT 59.877 37.037 0.00 0.00 0.00 2.45
207 208 6.625960 GCCATTTTTCTTAGTTGGACCTGATC 60.626 42.308 0.00 0.00 0.00 2.92
209 210 4.522789 GCCATTTTTCTTAGTTGGACCTGA 59.477 41.667 0.00 0.00 0.00 3.86
210 211 4.524328 AGCCATTTTTCTTAGTTGGACCTG 59.476 41.667 0.00 0.00 0.00 4.00
215 216 3.259123 AGCCAGCCATTTTTCTTAGTTGG 59.741 43.478 0.00 0.00 0.00 3.77
216 217 4.240096 CAGCCAGCCATTTTTCTTAGTTG 58.760 43.478 0.00 0.00 0.00 3.16
217 218 3.306294 GCAGCCAGCCATTTTTCTTAGTT 60.306 43.478 0.00 0.00 37.23 2.24
218 219 2.232208 GCAGCCAGCCATTTTTCTTAGT 59.768 45.455 0.00 0.00 37.23 2.24
221 222 3.921257 GCAGCCAGCCATTTTTCTT 57.079 47.368 0.00 0.00 37.23 2.52
232 233 2.337532 GCCACAACAAGCAGCCAG 59.662 61.111 0.00 0.00 0.00 4.85
233 234 3.225798 GGCCACAACAAGCAGCCA 61.226 61.111 0.00 0.00 43.32 4.75
332 333 1.080434 GCGACGGAGAGATATGGGC 60.080 63.158 0.00 0.00 0.00 5.36
336 337 0.178987 AGTGGGCGACGGAGAGATAT 60.179 55.000 0.00 0.00 0.00 1.63
345 348 2.182030 GGAGAAGAGTGGGCGACG 59.818 66.667 0.00 0.00 0.00 5.12
729 733 3.033764 TGCGCGTTGAACCTCGTC 61.034 61.111 8.43 0.00 0.00 4.20
732 736 4.072088 CGGTGCGCGTTGAACCTC 62.072 66.667 8.43 0.00 0.00 3.85
772 782 2.757077 GTGAAGTGGGTGGGGAGG 59.243 66.667 0.00 0.00 0.00 4.30
923 933 4.715130 CCGGACAGGGTGGGAGGA 62.715 72.222 0.00 0.00 35.97 3.71
960 970 1.712018 GAATTTAGTGCCCCGGCGTC 61.712 60.000 6.01 0.00 45.51 5.19
1003 1013 2.675317 CGAAGGAGGCTGTTGTAAGAGG 60.675 54.545 0.00 0.00 0.00 3.69
1033 1043 0.758123 GAGGAGGATGAGGAGCAAGG 59.242 60.000 0.00 0.00 0.00 3.61
1238 1248 4.021632 AGGAAGGAAGCAAGCAAAAGAATC 60.022 41.667 0.00 0.00 0.00 2.52
1242 1252 3.320256 AGAAGGAAGGAAGCAAGCAAAAG 59.680 43.478 0.00 0.00 0.00 2.27
1314 1326 5.835113 ACACCATAGCAAACATTATCCAC 57.165 39.130 0.00 0.00 0.00 4.02
1347 1359 5.520376 GCAATTGGCAACCTCACTATATT 57.480 39.130 0.00 0.00 43.97 1.28
1402 1430 4.401202 CAGTTTCCACCTTTGTACCAGTTT 59.599 41.667 0.00 0.00 0.00 2.66
1771 1800 5.193124 TCCACTAGTACACTGGATTAGAGGA 59.807 44.000 6.02 6.02 31.54 3.71
1776 1805 7.289084 TGCAATATCCACTAGTACACTGGATTA 59.711 37.037 18.80 9.49 41.24 1.75
1851 1880 0.036577 GAAGAGCAAGCAGGCAGAGA 60.037 55.000 2.37 0.00 35.83 3.10
1890 1919 9.827411 CATGAACAGCATCTATATCAATGAAAG 57.173 33.333 0.00 0.00 34.15 2.62
1985 2016 1.547675 CCTCCCTGCAGCAAACCTTTA 60.548 52.381 8.66 0.00 0.00 1.85
2083 2114 3.018856 CCCTGCATGCTCAAGTGAATTA 58.981 45.455 20.33 0.00 0.00 1.40
2165 2196 3.763097 TGCAATGAATAAGAAGCGGTG 57.237 42.857 0.00 0.00 0.00 4.94
2168 2199 5.574055 ACATGTTTGCAATGAATAAGAAGCG 59.426 36.000 0.00 0.00 0.00 4.68
2400 2431 7.201974 CCCAGGAGACGAAGATTACCTTTTATA 60.202 40.741 0.00 0.00 34.68 0.98
2490 2521 1.499368 TGCTGGGCAGATATCAGACA 58.501 50.000 5.32 0.00 33.32 3.41
2545 2576 5.431765 AGGTGCAGTTCCATTTCAGTATAG 58.568 41.667 0.00 0.00 0.00 1.31
2550 2581 3.820467 TGTAAGGTGCAGTTCCATTTCAG 59.180 43.478 0.00 0.00 0.00 3.02
2597 2628 9.132521 CAGAAATAAAAAGACAACATGATGGTC 57.867 33.333 7.95 7.80 0.00 4.02
2609 2640 8.733857 CAGAATGTCCACAGAAATAAAAAGAC 57.266 34.615 0.00 0.00 0.00 3.01
2628 2661 9.225201 CGTATTTCATTCCACAATTACAGAATG 57.775 33.333 13.45 13.45 44.44 2.67
2634 2667 6.250527 GTGTGCGTATTTCATTCCACAATTAC 59.749 38.462 0.00 0.00 35.30 1.89
2668 2708 7.864686 TGACTAATCTGACTGTTCAACATTTG 58.135 34.615 0.00 0.00 0.00 2.32
2776 3126 2.103263 ACCTATCTTCTCCAATGCGTCC 59.897 50.000 0.00 0.00 0.00 4.79
2884 3234 0.183731 GTGAGGGAGGGGCTTTATGG 59.816 60.000 0.00 0.00 0.00 2.74
2892 3242 0.863956 ATAGGAGAGTGAGGGAGGGG 59.136 60.000 0.00 0.00 0.00 4.79
2896 3246 1.856259 AGCTCATAGGAGAGTGAGGGA 59.144 52.381 8.95 0.00 44.26 4.20
2900 3250 4.861196 AGTTACAGCTCATAGGAGAGTGA 58.139 43.478 8.95 0.00 44.26 3.41
2939 3572 2.433604 TGCCATGCTTTGTTGGAAAAGA 59.566 40.909 0.99 0.00 39.12 2.52
2940 3573 2.836262 TGCCATGCTTTGTTGGAAAAG 58.164 42.857 0.00 0.00 39.66 2.27
2967 3600 4.881920 ACATGGCCTTTGTTTATGTGTTC 58.118 39.130 3.32 0.00 31.34 3.18
3009 3650 8.665643 TCTACGAGATTGTTAACTTTTTGGAA 57.334 30.769 7.22 0.00 0.00 3.53
3065 3707 0.465705 CCCTTCTGAGCTTGCCGATA 59.534 55.000 0.00 0.00 0.00 2.92
3067 3709 1.267574 ATCCCTTCTGAGCTTGCCGA 61.268 55.000 0.00 0.00 0.00 5.54
3094 3736 5.057819 CAGGGATCAGACAGAGAATCATTG 58.942 45.833 0.00 0.00 37.82 2.82
3321 3963 5.301805 ACCATTCAGTTTGTTAAGAACCAGG 59.698 40.000 0.00 0.00 0.00 4.45
3405 4047 5.771666 ACCTGTCATAATGGCAATATCTTGG 59.228 40.000 0.00 0.00 28.17 3.61
3516 4158 8.175069 TGCAAAGATATCACAAACGATAAAGAC 58.825 33.333 5.32 0.00 31.80 3.01
3561 4203 9.612066 AAATGTATGAAAAAGAGCTTTTGGAAA 57.388 25.926 8.80 0.00 41.45 3.13
3562 4204 9.612066 AAAATGTATGAAAAAGAGCTTTTGGAA 57.388 25.926 8.80 0.00 41.45 3.53
3563 4205 9.612066 AAAAATGTATGAAAAAGAGCTTTTGGA 57.388 25.926 8.80 0.28 41.45 3.53
3605 4247 5.642919 GGCTCATCTTAGCATTCATTAGAGG 59.357 44.000 0.00 0.00 44.64 3.69
3617 4259 6.934048 ATACAAGAAAAGGCTCATCTTAGC 57.066 37.500 12.67 0.00 41.99 3.09
3784 4503 2.555757 ACAAAGAAATCTGCACCTGCTC 59.444 45.455 0.00 0.00 42.66 4.26
3920 4639 4.019860 TGCATAATCCTAGCCTCAATCTCC 60.020 45.833 0.00 0.00 0.00 3.71
3983 4702 7.624661 CAATTCTTGCAGAAAACCTTTCTTTC 58.375 34.615 0.00 0.00 37.82 2.62
4013 4732 0.459489 CTGCTACACCTCTGGAGAGC 59.541 60.000 0.00 1.21 40.75 4.09
4019 4738 4.081420 ACCTTGATAACTGCTACACCTCTG 60.081 45.833 0.00 0.00 0.00 3.35
4050 4769 6.323996 TGGAATGTAGGTAGTCTAGTGAATGG 59.676 42.308 0.00 0.00 0.00 3.16
4063 4782 7.414222 ACGAAGAACTATTGGAATGTAGGTA 57.586 36.000 0.00 0.00 0.00 3.08
4113 4839 6.479990 TCCTGAAACTCTATGTAATGATTGCG 59.520 38.462 0.00 0.00 0.00 4.85
4176 4902 7.119387 AGAGGAACAGGGGACAAATTTAATAG 58.881 38.462 0.00 0.00 0.00 1.73
4187 4913 1.700186 ACAAAGAGAGGAACAGGGGAC 59.300 52.381 0.00 0.00 0.00 4.46
4189 4915 1.271597 CCACAAAGAGAGGAACAGGGG 60.272 57.143 0.00 0.00 0.00 4.79
4197 4924 2.490903 CTCAAATGCCCACAAAGAGAGG 59.509 50.000 0.00 0.00 0.00 3.69
4271 4998 3.458044 TCCTCCACTCTCAGCTTTCTA 57.542 47.619 0.00 0.00 0.00 2.10
4379 5106 6.014242 GGTCATCCACAAGATCCATGATACTA 60.014 42.308 0.00 0.00 30.59 1.82
4394 5121 0.252057 TCTCTTCCGGGTCATCCACA 60.252 55.000 0.00 0.00 34.36 4.17
4426 5153 4.837093 TGACCTACCTTTCCCACAATAG 57.163 45.455 0.00 0.00 0.00 1.73
4436 5163 3.959495 ATGCATGGATGACCTACCTTT 57.041 42.857 0.00 0.00 37.04 3.11
4473 5200 2.305927 CCTTCCCCACAGTATTCACACT 59.694 50.000 0.00 0.00 0.00 3.55
4546 5285 4.072131 ACATCTTACACAAAATCAGCGGT 58.928 39.130 0.00 0.00 0.00 5.68
4568 5307 3.280295 TGTTTAGGTTCGCAAAAGTGGA 58.720 40.909 0.00 0.00 0.00 4.02
4605 5344 3.197983 GCAACTAACAGGTATCTGAGGGT 59.802 47.826 10.76 2.00 43.49 4.34
4611 5354 1.831736 AGCGGCAACTAACAGGTATCT 59.168 47.619 1.45 0.00 0.00 1.98
4617 5360 1.662629 CATCTGAGCGGCAACTAACAG 59.337 52.381 1.45 2.29 0.00 3.16
4619 5362 1.009829 CCATCTGAGCGGCAACTAAC 58.990 55.000 1.45 0.00 0.00 2.34
4627 5370 3.428725 GCTAGATACATCCATCTGAGCGG 60.429 52.174 0.00 0.00 35.99 5.52
4634 5377 7.274468 CGTATTTCAGTGCTAGATACATCCATC 59.726 40.741 0.00 0.00 0.00 3.51
4636 5379 6.040504 ACGTATTTCAGTGCTAGATACATCCA 59.959 38.462 0.00 0.00 0.00 3.41
4681 5424 5.188163 TCCCTTCGATTGGTACTAATTGTCA 59.812 40.000 16.36 6.44 0.00 3.58
4690 5434 6.645790 TTCTATACTCCCTTCGATTGGTAC 57.354 41.667 4.59 0.00 0.00 3.34
4693 5437 6.073003 GCAAATTCTATACTCCCTTCGATTGG 60.073 42.308 0.00 0.00 0.00 3.16
4694 5438 6.708054 AGCAAATTCTATACTCCCTTCGATTG 59.292 38.462 0.00 0.00 0.00 2.67
4711 5457 6.595716 AGTCACCATAACTGACTAGCAAATTC 59.404 38.462 0.00 0.00 45.35 2.17
4806 5553 5.361135 TGCGATAGATGCATGTAATTTGG 57.639 39.130 2.46 0.00 37.44 3.28
4818 5565 7.487484 ACAGTTAGGATGATATGCGATAGATG 58.513 38.462 0.00 0.00 39.76 2.90
4825 5572 9.385902 CAAATTTTACAGTTAGGATGATATGCG 57.614 33.333 0.00 0.00 0.00 4.73
4842 5589 7.475771 TGGAACAGCATTTCACAAATTTTAC 57.524 32.000 0.00 0.00 0.00 2.01
5201 5971 8.359642 TCTTCACATTTATGAAACCTTCTTTGG 58.640 33.333 0.00 0.00 38.12 3.28
5260 6030 3.591023 GTGAGAAGAGCTGTCCTTTACC 58.409 50.000 0.00 0.00 0.00 2.85
5345 6136 2.226912 GCTGTAGACACTCGTGAGAAGT 59.773 50.000 3.44 1.84 41.32 3.01
5366 6157 1.197036 CACTGCTGCAGACAATCACTG 59.803 52.381 34.28 16.26 38.27 3.66
5367 6158 1.071228 TCACTGCTGCAGACAATCACT 59.929 47.619 34.28 7.99 35.18 3.41
5368 6159 1.516161 TCACTGCTGCAGACAATCAC 58.484 50.000 34.28 0.00 35.18 3.06
5370 6161 2.159421 CCATTCACTGCTGCAGACAATC 60.159 50.000 34.28 0.00 35.18 2.67
5372 6163 1.241165 CCATTCACTGCTGCAGACAA 58.759 50.000 34.28 24.19 35.18 3.18
5373 6164 0.607217 CCCATTCACTGCTGCAGACA 60.607 55.000 34.28 17.60 35.18 3.41
5374 6165 0.607489 ACCCATTCACTGCTGCAGAC 60.607 55.000 34.28 9.67 35.18 3.51
5375 6166 0.983467 TACCCATTCACTGCTGCAGA 59.017 50.000 34.28 14.20 35.18 4.26
5377 6168 0.322456 GGTACCCATTCACTGCTGCA 60.322 55.000 0.00 0.88 0.00 4.41
5378 6169 0.322456 TGGTACCCATTCACTGCTGC 60.322 55.000 10.07 0.00 0.00 5.25
5379 6170 2.425143 ATGGTACCCATTCACTGCTG 57.575 50.000 10.07 0.00 42.23 4.41
5433 6226 9.150028 ACCCCACAAAATAAACAGTACTAAAAT 57.850 29.630 0.00 0.00 0.00 1.82
5453 6246 7.919091 CAGTACTAAAAAGAAAAAGAACCCCAC 59.081 37.037 0.00 0.00 0.00 4.61
5599 6985 9.923143 GCCACTGTAATCATACTATGTTACATA 57.077 33.333 16.36 4.89 36.80 2.29
5621 7008 1.865865 TCGACAAGAAGTTCTGCCAC 58.134 50.000 6.06 0.00 0.00 5.01
5634 7022 6.885952 TCTTAAACATTTGGGAATCGACAA 57.114 33.333 0.00 0.00 0.00 3.18
5717 7116 2.992543 GCAGCGCATTTGATTTTACCAA 59.007 40.909 11.47 0.00 0.00 3.67
5810 7222 3.506067 AGTTGAAATCGATGGGTCCAAAC 59.494 43.478 0.00 0.00 0.00 2.93
5813 7225 2.039746 ACAGTTGAAATCGATGGGTCCA 59.960 45.455 0.00 0.00 0.00 4.02
5854 7266 4.926140 TTGCACATCACACCAATACAAA 57.074 36.364 0.00 0.00 0.00 2.83
5860 7273 5.931146 GGAAAAATATTGCACATCACACCAA 59.069 36.000 0.00 0.00 0.00 3.67
5867 7287 7.485913 CGGCATATAGGAAAAATATTGCACATC 59.514 37.037 0.00 0.00 0.00 3.06
5884 7305 5.762045 CTTGTTCCAAAATCCGGCATATAG 58.238 41.667 0.00 0.00 0.00 1.31
5901 7322 2.162408 GCCAGTTATCCTGTGCTTGTTC 59.838 50.000 0.00 0.00 39.74 3.18
6007 7460 5.136828 ACACCACATTTGTCAGGTATCAAA 58.863 37.500 0.00 0.00 37.82 2.69
6008 7461 4.724399 ACACCACATTTGTCAGGTATCAA 58.276 39.130 0.00 0.00 32.01 2.57
6009 7462 4.365514 ACACCACATTTGTCAGGTATCA 57.634 40.909 0.00 0.00 32.01 2.15
6010 7463 4.615912 GCAACACCACATTTGTCAGGTATC 60.616 45.833 0.00 0.00 32.01 2.24
6011 7464 3.255642 GCAACACCACATTTGTCAGGTAT 59.744 43.478 0.00 0.00 32.01 2.73
6012 7465 2.621055 GCAACACCACATTTGTCAGGTA 59.379 45.455 0.00 0.00 32.01 3.08
6013 7466 1.408702 GCAACACCACATTTGTCAGGT 59.591 47.619 0.00 0.00 33.91 4.00
6014 7467 1.269726 GGCAACACCACATTTGTCAGG 60.270 52.381 0.00 0.00 38.86 3.86
6015 7468 1.682854 AGGCAACACCACATTTGTCAG 59.317 47.619 0.00 0.00 43.14 3.51
6016 7469 1.680735 GAGGCAACACCACATTTGTCA 59.319 47.619 0.00 0.00 43.14 3.58
6017 7470 1.956477 AGAGGCAACACCACATTTGTC 59.044 47.619 0.00 0.00 43.14 3.18
6018 7471 2.071778 AGAGGCAACACCACATTTGT 57.928 45.000 0.00 0.00 43.14 2.83
6019 7472 2.101249 ACAAGAGGCAACACCACATTTG 59.899 45.455 0.00 0.00 43.14 2.32
6020 7473 2.387757 ACAAGAGGCAACACCACATTT 58.612 42.857 0.00 0.00 43.14 2.32
6021 7474 2.071778 ACAAGAGGCAACACCACATT 57.928 45.000 0.00 0.00 43.14 2.71
6022 7475 2.071778 AACAAGAGGCAACACCACAT 57.928 45.000 0.00 0.00 43.14 3.21
6023 7476 1.476085 CAAACAAGAGGCAACACCACA 59.524 47.619 0.00 0.00 43.14 4.17
6024 7477 1.748493 TCAAACAAGAGGCAACACCAC 59.252 47.619 0.00 0.00 43.14 4.16
6025 7478 2.136298 TCAAACAAGAGGCAACACCA 57.864 45.000 0.00 0.00 43.14 4.17
6026 7479 3.057526 GGTATCAAACAAGAGGCAACACC 60.058 47.826 0.00 0.00 41.41 4.16
6027 7480 3.821033 AGGTATCAAACAAGAGGCAACAC 59.179 43.478 0.00 0.00 41.41 3.32
6028 7481 4.098914 AGGTATCAAACAAGAGGCAACA 57.901 40.909 0.00 0.00 41.41 3.33
6029 7482 5.472137 TGTTAGGTATCAAACAAGAGGCAAC 59.528 40.000 0.00 0.00 32.86 4.17
6030 7483 5.626142 TGTTAGGTATCAAACAAGAGGCAA 58.374 37.500 0.00 0.00 32.86 4.52
6031 7484 5.235850 TGTTAGGTATCAAACAAGAGGCA 57.764 39.130 0.00 0.00 32.86 4.75
6032 7485 6.569179 TTTGTTAGGTATCAAACAAGAGGC 57.431 37.500 0.00 0.00 44.05 4.70
6033 7486 8.023128 CACATTTGTTAGGTATCAAACAAGAGG 58.977 37.037 0.00 0.00 44.05 3.69
6034 7487 8.783093 TCACATTTGTTAGGTATCAAACAAGAG 58.217 33.333 0.00 0.00 44.05 2.85
6035 7488 8.684386 TCACATTTGTTAGGTATCAAACAAGA 57.316 30.769 0.00 0.00 44.05 3.02
6036 7489 9.180678 GTTCACATTTGTTAGGTATCAAACAAG 57.819 33.333 0.00 0.00 44.05 3.16
6037 7490 8.908903 AGTTCACATTTGTTAGGTATCAAACAA 58.091 29.630 0.00 0.00 42.27 2.83
6038 7491 8.458573 AGTTCACATTTGTTAGGTATCAAACA 57.541 30.769 0.00 0.00 36.58 2.83
6072 7525 8.922676 CGAAACAGAAAATAGTACACATGTAGT 58.077 33.333 0.00 1.92 37.82 2.73
6073 7526 8.380644 CCGAAACAGAAAATAGTACACATGTAG 58.619 37.037 0.00 0.00 0.00 2.74
6074 7527 7.874016 ACCGAAACAGAAAATAGTACACATGTA 59.126 33.333 0.00 0.00 0.00 2.29
6075 7528 6.708949 ACCGAAACAGAAAATAGTACACATGT 59.291 34.615 0.00 0.00 0.00 3.21
6076 7529 7.129109 ACCGAAACAGAAAATAGTACACATG 57.871 36.000 0.00 0.00 0.00 3.21
6077 7530 9.444600 AATACCGAAACAGAAAATAGTACACAT 57.555 29.630 0.00 0.00 0.00 3.21
6078 7531 8.714179 CAATACCGAAACAGAAAATAGTACACA 58.286 33.333 0.00 0.00 0.00 3.72
6079 7532 8.928733 TCAATACCGAAACAGAAAATAGTACAC 58.071 33.333 0.00 0.00 0.00 2.90
6080 7533 9.661563 ATCAATACCGAAACAGAAAATAGTACA 57.338 29.630 0.00 0.00 0.00 2.90
6081 7534 9.916397 CATCAATACCGAAACAGAAAATAGTAC 57.084 33.333 0.00 0.00 0.00 2.73
6082 7535 9.661563 ACATCAATACCGAAACAGAAAATAGTA 57.338 29.630 0.00 0.00 0.00 1.82
6100 7553 9.679661 ACATTACACTACCATTTGACATCAATA 57.320 29.630 0.00 0.00 35.55 1.90
6101 7554 8.579850 ACATTACACTACCATTTGACATCAAT 57.420 30.769 0.00 0.00 35.55 2.57
6115 7568 3.226346 TCAGTGCGGACATTACACTAC 57.774 47.619 10.52 0.00 42.59 2.73
6125 7578 0.109272 TGAGATCGTTCAGTGCGGAC 60.109 55.000 0.00 0.00 0.00 4.79
6131 7584 1.535833 ACCGTCTGAGATCGTTCAGT 58.464 50.000 10.76 0.00 43.96 3.41
6132 7585 2.539953 GCTACCGTCTGAGATCGTTCAG 60.540 54.545 5.77 5.77 44.74 3.02
6144 7597 6.902771 AGTAATCAGATTATGCTACCGTCT 57.097 37.500 6.14 0.00 0.00 4.18
6145 7598 7.537991 GTGTAGTAATCAGATTATGCTACCGTC 59.462 40.741 19.19 11.36 29.81 4.79
6147 7600 7.594714 AGTGTAGTAATCAGATTATGCTACCG 58.405 38.462 19.19 0.00 29.81 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.