Multiple sequence alignment - TraesCS5A01G366400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G366400 chr5A 100.000 2657 0 0 1 2657 566144387 566141731 0.000000e+00 4907.0
1 TraesCS5A01G366400 chr5A 93.280 2009 89 9 1 1968 650676333 650678336 0.000000e+00 2920.0
2 TraesCS5A01G366400 chr5A 92.404 1988 86 9 1 1968 599728159 599726217 0.000000e+00 2774.0
3 TraesCS5A01G366400 chr5A 92.593 1917 79 12 1 1888 491738509 491740391 0.000000e+00 2695.0
4 TraesCS5A01G366400 chr5A 92.655 708 35 5 1274 1968 556781203 556781906 0.000000e+00 1003.0
5 TraesCS5A01G366400 chr5A 92.126 127 8 1 1840 1966 491740385 491740509 7.560000e-41 178.0
6 TraesCS5A01G366400 chr5A 90.226 133 11 1 1834 1966 657494659 657494529 3.520000e-39 172.0
7 TraesCS5A01G366400 chr5A 82.286 175 29 2 2345 2518 566090011 566089838 1.650000e-32 150.0
8 TraesCS5A01G366400 chr2A 93.454 1986 102 8 1 1966 703351120 703353097 0.000000e+00 2922.0
9 TraesCS5A01G366400 chr2A 92.530 1901 106 9 1 1868 758117095 758115198 0.000000e+00 2691.0
10 TraesCS5A01G366400 chr2A 87.884 619 43 9 1367 1968 136968978 136969581 0.000000e+00 699.0
11 TraesCS5A01G366400 chr7A 92.744 2012 97 14 1 1967 662137560 662139567 0.000000e+00 2861.0
12 TraesCS5A01G366400 chr7A 91.808 1941 94 17 1 1891 18188372 18186447 0.000000e+00 2643.0
13 TraesCS5A01G366400 chr7A 87.008 2032 172 39 1 1968 465794993 465796996 0.000000e+00 2206.0
14 TraesCS5A01G366400 chr7A 94.698 1358 47 5 1 1333 725469834 725471191 0.000000e+00 2085.0
15 TraesCS5A01G366400 chr7A 95.279 1292 58 3 1 1289 474516196 474517487 0.000000e+00 2045.0
16 TraesCS5A01G366400 chr4A 93.557 1909 86 10 1 1888 612663305 612665197 0.000000e+00 2809.0
17 TraesCS5A01G366400 chr4A 91.523 2029 84 12 2 1968 684298639 684300641 0.000000e+00 2713.0
18 TraesCS5A01G366400 chr4A 95.478 1150 48 2 1 1149 539142664 539141518 0.000000e+00 1832.0
19 TraesCS5A01G366400 chr4A 88.256 579 45 8 1411 1968 6474264 6473688 0.000000e+00 671.0
20 TraesCS5A01G366400 chr4A 89.339 469 25 6 1524 1971 41934041 41934505 1.380000e-157 566.0
21 TraesCS5A01G366400 chr6A 91.716 2040 94 12 1 1972 544168213 544166181 0.000000e+00 2761.0
22 TraesCS5A01G366400 chr6A 87.153 1907 198 28 1 1886 515656802 515654922 0.000000e+00 2121.0
23 TraesCS5A01G366400 chr6A 90.506 158 7 5 1732 1888 119763085 119763235 4.480000e-48 202.0
24 TraesCS5A01G366400 chr6A 85.811 148 6 4 1840 1975 189549190 189549334 2.760000e-30 143.0
25 TraesCS5A01G366400 chr1A 93.005 1830 80 12 178 1968 18104105 18105925 0.000000e+00 2627.0
26 TraesCS5A01G366400 chr1A 88.920 704 55 8 1277 1968 520126691 520125999 0.000000e+00 846.0
27 TraesCS5A01G366400 chr1A 91.457 199 9 5 1692 1888 394573539 394573731 1.570000e-67 267.0
28 TraesCS5A01G366400 chr1A 94.355 124 5 1 1842 1965 420528465 420528344 3.490000e-44 189.0
29 TraesCS5A01G366400 chr1A 93.701 127 6 1 1842 1968 465431632 465431756 3.490000e-44 189.0
30 TraesCS5A01G366400 chr1A 89.630 135 12 1 1834 1968 208879044 208878912 1.260000e-38 171.0
31 TraesCS5A01G366400 chr4D 90.890 1921 115 22 1 1888 93439722 93441615 0.000000e+00 2523.0
32 TraesCS5A01G366400 chr3D 90.796 1923 115 24 1 1881 336809497 336811399 0.000000e+00 2514.0
33 TraesCS5A01G366400 chr2B 87.665 2043 153 40 1 1966 57914565 57916585 0.000000e+00 2285.0
34 TraesCS5A01G366400 chr2B 84.775 1353 173 19 1 1340 25263919 25262587 0.000000e+00 1327.0
35 TraesCS5A01G366400 chr3B 87.393 1404 155 16 1 1398 739877601 739876214 0.000000e+00 1592.0
36 TraesCS5A01G366400 chr4B 82.202 1826 239 52 1 1769 520199015 520197219 0.000000e+00 1493.0
37 TraesCS5A01G366400 chr3A 90.390 666 38 12 1317 1969 518680048 518679396 0.000000e+00 852.0
38 TraesCS5A01G366400 chr3A 91.620 179 6 6 1711 1888 19311089 19311259 3.420000e-59 239.0
39 TraesCS5A01G366400 chr5D 96.208 501 19 0 1965 2465 447950415 447949915 0.000000e+00 821.0
40 TraesCS5A01G366400 chr5D 78.571 182 36 3 2328 2508 447911867 447911688 1.670000e-22 117.0
41 TraesCS5A01G366400 chr5B 88.058 695 73 5 1965 2656 547062742 547062055 0.000000e+00 815.0
42 TraesCS5A01G366400 chr5B 90.850 153 10 1 1965 2113 546918946 546918794 4.480000e-48 202.0
43 TraesCS5A01G366400 chr5B 78.733 221 38 7 2301 2515 547002773 547002556 3.570000e-29 139.0
44 TraesCS5A01G366400 chr5B 81.395 129 22 2 2391 2518 546857575 546857448 1.300000e-18 104.0
45 TraesCS5A01G366400 chr5B 86.301 73 10 0 2446 2518 546854446 546854374 2.190000e-11 80.5
46 TraesCS5A01G366400 chrUn 86.809 470 19 6 1420 1868 150818591 150819038 3.980000e-133 484.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G366400 chr5A 566141731 566144387 2656 True 4907.0 4907 100.0000 1 2657 1 chr5A.!!$R2 2656
1 TraesCS5A01G366400 chr5A 650676333 650678336 2003 False 2920.0 2920 93.2800 1 1968 1 chr5A.!!$F2 1967
2 TraesCS5A01G366400 chr5A 599726217 599728159 1942 True 2774.0 2774 92.4040 1 1968 1 chr5A.!!$R3 1967
3 TraesCS5A01G366400 chr5A 491738509 491740509 2000 False 1436.5 2695 92.3595 1 1966 2 chr5A.!!$F3 1965
4 TraesCS5A01G366400 chr5A 556781203 556781906 703 False 1003.0 1003 92.6550 1274 1968 1 chr5A.!!$F1 694
5 TraesCS5A01G366400 chr2A 703351120 703353097 1977 False 2922.0 2922 93.4540 1 1966 1 chr2A.!!$F2 1965
6 TraesCS5A01G366400 chr2A 758115198 758117095 1897 True 2691.0 2691 92.5300 1 1868 1 chr2A.!!$R1 1867
7 TraesCS5A01G366400 chr2A 136968978 136969581 603 False 699.0 699 87.8840 1367 1968 1 chr2A.!!$F1 601
8 TraesCS5A01G366400 chr7A 662137560 662139567 2007 False 2861.0 2861 92.7440 1 1967 1 chr7A.!!$F3 1966
9 TraesCS5A01G366400 chr7A 18186447 18188372 1925 True 2643.0 2643 91.8080 1 1891 1 chr7A.!!$R1 1890
10 TraesCS5A01G366400 chr7A 465794993 465796996 2003 False 2206.0 2206 87.0080 1 1968 1 chr7A.!!$F1 1967
11 TraesCS5A01G366400 chr7A 725469834 725471191 1357 False 2085.0 2085 94.6980 1 1333 1 chr7A.!!$F4 1332
12 TraesCS5A01G366400 chr7A 474516196 474517487 1291 False 2045.0 2045 95.2790 1 1289 1 chr7A.!!$F2 1288
13 TraesCS5A01G366400 chr4A 612663305 612665197 1892 False 2809.0 2809 93.5570 1 1888 1 chr4A.!!$F2 1887
14 TraesCS5A01G366400 chr4A 684298639 684300641 2002 False 2713.0 2713 91.5230 2 1968 1 chr4A.!!$F3 1966
15 TraesCS5A01G366400 chr4A 539141518 539142664 1146 True 1832.0 1832 95.4780 1 1149 1 chr4A.!!$R2 1148
16 TraesCS5A01G366400 chr4A 6473688 6474264 576 True 671.0 671 88.2560 1411 1968 1 chr4A.!!$R1 557
17 TraesCS5A01G366400 chr6A 544166181 544168213 2032 True 2761.0 2761 91.7160 1 1972 1 chr6A.!!$R2 1971
18 TraesCS5A01G366400 chr6A 515654922 515656802 1880 True 2121.0 2121 87.1530 1 1886 1 chr6A.!!$R1 1885
19 TraesCS5A01G366400 chr1A 18104105 18105925 1820 False 2627.0 2627 93.0050 178 1968 1 chr1A.!!$F1 1790
20 TraesCS5A01G366400 chr1A 520125999 520126691 692 True 846.0 846 88.9200 1277 1968 1 chr1A.!!$R3 691
21 TraesCS5A01G366400 chr4D 93439722 93441615 1893 False 2523.0 2523 90.8900 1 1888 1 chr4D.!!$F1 1887
22 TraesCS5A01G366400 chr3D 336809497 336811399 1902 False 2514.0 2514 90.7960 1 1881 1 chr3D.!!$F1 1880
23 TraesCS5A01G366400 chr2B 57914565 57916585 2020 False 2285.0 2285 87.6650 1 1966 1 chr2B.!!$F1 1965
24 TraesCS5A01G366400 chr2B 25262587 25263919 1332 True 1327.0 1327 84.7750 1 1340 1 chr2B.!!$R1 1339
25 TraesCS5A01G366400 chr3B 739876214 739877601 1387 True 1592.0 1592 87.3930 1 1398 1 chr3B.!!$R1 1397
26 TraesCS5A01G366400 chr4B 520197219 520199015 1796 True 1493.0 1493 82.2020 1 1769 1 chr4B.!!$R1 1768
27 TraesCS5A01G366400 chr3A 518679396 518680048 652 True 852.0 852 90.3900 1317 1969 1 chr3A.!!$R1 652
28 TraesCS5A01G366400 chr5D 447949915 447950415 500 True 821.0 821 96.2080 1965 2465 1 chr5D.!!$R2 500
29 TraesCS5A01G366400 chr5B 547062055 547062742 687 True 815.0 815 88.0580 1965 2656 1 chr5B.!!$R3 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 287 1.048724 CGAGGAGGGTGAGGGCATTA 61.049 60.0 0.0 0.0 0.00 1.90 F
1149 1261 0.321346 TGAGCAATGAGGAGCGAACA 59.679 50.0 0.0 0.0 35.48 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 1724 0.107214 CCCATGGTGGTCATAGCGTT 60.107 55.0 11.73 0.0 35.17 4.84 R
2196 2714 0.246635 GGCCGTGTCTCTTGCTTCTA 59.753 55.0 0.00 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 152 9.362539 AGATAGCTTATTTGCATTGTTCAAAAG 57.637 29.630 0.00 0.00 37.04 2.27
239 250 6.045072 ACCAATGACATGCATTTTGAAGAT 57.955 33.333 11.21 0.00 44.68 2.40
276 287 1.048724 CGAGGAGGGTGAGGGCATTA 61.049 60.000 0.00 0.00 0.00 1.90
474 485 1.831736 CCAACCGATCACTTAGGTCCT 59.168 52.381 0.00 0.00 37.26 3.85
672 692 5.114785 TGTAGTACAACATTGCGCAAAAT 57.885 34.783 28.81 15.49 0.00 1.82
767 788 4.264253 TGCTATGAAGTGTTGAAGGATGG 58.736 43.478 0.00 0.00 0.00 3.51
779 800 4.226427 TGAAGGATGGTGAGAAATGGAG 57.774 45.455 0.00 0.00 0.00 3.86
844 865 6.938030 ACGGAAGTGAACAATTAAGTTGGATA 59.062 34.615 0.00 0.00 46.97 2.59
860 905 5.944599 AGTTGGATAATGATGATGATGAGGC 59.055 40.000 0.00 0.00 0.00 4.70
1149 1261 0.321346 TGAGCAATGAGGAGCGAACA 59.679 50.000 0.00 0.00 35.48 3.18
1171 1283 4.934797 AGATTGTTGGAATGGGAGAAGA 57.065 40.909 0.00 0.00 0.00 2.87
1205 1317 6.119536 TCTTGAACACAACTAACCTCAATGT 58.880 36.000 0.00 0.00 0.00 2.71
1223 1335 3.641437 TGTGGCACAAAAAGAGTATGC 57.359 42.857 19.74 0.00 44.16 3.14
1433 1760 0.918799 ACCACCATGGGAGGCATGTA 60.919 55.000 21.68 0.00 43.37 2.29
1721 2123 1.216678 TGGTTGGATGAACTTGTGGGT 59.783 47.619 0.00 0.00 34.66 4.51
1724 2126 3.694566 GGTTGGATGAACTTGTGGGTATC 59.305 47.826 0.00 0.00 34.66 2.24
1973 2491 5.931146 CCTGTTGGAGATGCTCTAATGATAC 59.069 44.000 0.00 0.00 33.81 2.24
2117 2635 1.526575 CGCAAGCCCAACAACTCCAT 61.527 55.000 0.00 0.00 0.00 3.41
2172 2690 0.892358 ACACGAGCTACCGTCCTGAA 60.892 55.000 0.00 0.00 41.29 3.02
2222 2740 2.809861 AAGAGACACGGCCAGCCATG 62.810 60.000 9.78 6.30 35.12 3.66
2363 2881 6.380274 ACATAGCCTAGCTAACTTGTCAGTTA 59.620 38.462 0.00 0.00 44.62 2.24
2365 2883 6.301169 AGCCTAGCTAACTTGTCAGTTAAT 57.699 37.500 0.00 0.00 43.57 1.40
2382 2900 5.512788 CAGTTAATTGCAGCCTACAAATTCG 59.487 40.000 0.00 0.00 0.00 3.34
2433 2951 6.708054 GGGTATCATGTCTTCAAGTATTCTGG 59.292 42.308 0.00 0.00 0.00 3.86
2485 3003 8.885693 ACTCACCATATCATAAGTGCTCTATA 57.114 34.615 0.00 0.00 0.00 1.31
2518 3036 8.647143 AAATGAATATTTTTACGGATGCCAAG 57.353 30.769 0.00 0.00 32.70 3.61
2532 3050 0.383231 GCCAAGATCAGGAAATGGCG 59.617 55.000 8.29 0.00 46.11 5.69
2536 3054 0.749454 AGATCAGGAAATGGCGCCAC 60.749 55.000 35.50 20.09 0.00 5.01
2542 3060 1.506262 GAAATGGCGCCACGAACAT 59.494 52.632 35.50 12.76 0.00 2.71
2568 3086 2.353208 GCAATCAGTCTCACTTCCGAGT 60.353 50.000 0.00 0.00 36.25 4.18
2574 3092 2.966516 AGTCTCACTTCCGAGTTTTCCT 59.033 45.455 0.00 0.00 32.54 3.36
2578 3096 2.631062 TCACTTCCGAGTTTTCCTAGCA 59.369 45.455 0.00 0.00 32.54 3.49
2590 3108 4.473477 TTTCCTAGCAGGCTTTAGTCTC 57.527 45.455 0.00 0.00 34.61 3.36
2593 3111 4.465886 TCCTAGCAGGCTTTAGTCTCTAG 58.534 47.826 0.00 9.18 34.61 2.43
2594 3112 4.166337 TCCTAGCAGGCTTTAGTCTCTAGA 59.834 45.833 0.00 0.00 34.61 2.43
2595 3113 4.890581 CCTAGCAGGCTTTAGTCTCTAGAA 59.109 45.833 0.00 0.00 33.43 2.10
2596 3114 5.009610 CCTAGCAGGCTTTAGTCTCTAGAAG 59.990 48.000 0.00 0.00 33.43 2.85
2597 3115 4.349365 AGCAGGCTTTAGTCTCTAGAAGT 58.651 43.478 0.00 0.00 0.00 3.01
2598 3116 4.775253 AGCAGGCTTTAGTCTCTAGAAGTT 59.225 41.667 0.00 0.00 0.00 2.66
2599 3117 5.952947 AGCAGGCTTTAGTCTCTAGAAGTTA 59.047 40.000 0.00 0.00 0.00 2.24
2600 3118 6.096282 AGCAGGCTTTAGTCTCTAGAAGTTAG 59.904 42.308 0.00 0.00 0.00 2.34
2611 3129 8.780003 AGTCTCTAGAAGTTAGATAACCTGGTA 58.220 37.037 0.00 0.00 36.88 3.25
2616 3134 9.315363 CTAGAAGTTAGATAACCTGGTATCCAT 57.685 37.037 0.00 0.00 36.88 3.41
2641 3162 7.323420 TCAAGTCACTCCTGATTTACACATAG 58.677 38.462 0.00 0.00 0.00 2.23
2642 3163 7.178451 TCAAGTCACTCCTGATTTACACATAGA 59.822 37.037 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 152 7.700505 TGCATCATCATTGAGACTACAATTTC 58.299 34.615 0.00 0.00 38.25 2.17
239 250 0.526211 CGTCCACCTCGAACTCATGA 59.474 55.000 0.00 0.00 0.00 3.07
276 287 1.156736 CTTCCTTTTGGTGCGTCGAT 58.843 50.000 0.00 0.00 41.38 3.59
474 485 1.604438 CGAGTTGATTGTCGACCACCA 60.604 52.381 14.12 0.00 38.50 4.17
672 692 5.630415 TCCTCTCCTCTTCTTTGAACAAA 57.370 39.130 0.17 0.17 0.00 2.83
767 788 1.734465 CACGCTTCCTCCATTTCTCAC 59.266 52.381 0.00 0.00 0.00 3.51
779 800 3.009723 TCATCCAAATCTTCACGCTTCC 58.990 45.455 0.00 0.00 0.00 3.46
844 865 3.759086 GCATCAGCCTCATCATCATCATT 59.241 43.478 0.00 0.00 33.58 2.57
1104 1195 1.074566 CTCTCCTCCAAAGCCACCTTT 59.925 52.381 0.00 0.00 41.86 3.11
1149 1261 5.261040 TCTTCTCCCATTCCAACAATCTT 57.739 39.130 0.00 0.00 0.00 2.40
1186 1298 3.317993 GCCACATTGAGGTTAGTTGTGTT 59.682 43.478 1.98 0.00 36.75 3.32
1359 1656 1.005924 CCTCCCATTGCACCTAAACCT 59.994 52.381 0.00 0.00 0.00 3.50
1405 1724 0.107214 CCCATGGTGGTCATAGCGTT 60.107 55.000 11.73 0.00 35.17 4.84
1433 1760 3.629087 CCTCCCATGAGAGAAGCAAAAT 58.371 45.455 5.69 0.00 41.42 1.82
1582 1918 2.756907 TGAATCTTCCTCCCTCTCCTG 58.243 52.381 0.00 0.00 0.00 3.86
1605 1947 1.299468 CGATTCTTCCGCCTCCGAG 60.299 63.158 0.00 0.00 36.29 4.63
1721 2123 7.473735 TCATGCCCACAAGTTTAAAATGATA 57.526 32.000 8.74 0.00 0.00 2.15
1724 2126 5.990996 AGTTCATGCCCACAAGTTTAAAATG 59.009 36.000 0.00 0.00 0.00 2.32
1973 2491 1.172180 TTGTTTCCAGCCCAAGCGAG 61.172 55.000 0.00 0.00 46.67 5.03
2021 2539 0.685458 GCTTTGATGAGGGTGGCCAT 60.685 55.000 9.72 0.00 0.00 4.40
2117 2635 3.749064 GACGAGCTGAGCACCGGA 61.749 66.667 19.84 0.00 32.95 5.14
2196 2714 0.246635 GGCCGTGTCTCTTGCTTCTA 59.753 55.000 0.00 0.00 0.00 2.10
2363 2881 2.417243 GCCGAATTTGTAGGCTGCAATT 60.417 45.455 18.73 12.43 46.83 2.32
2365 2883 0.525761 GCCGAATTTGTAGGCTGCAA 59.474 50.000 14.27 14.27 46.83 4.08
2433 2951 1.611491 TCCAAACTGTCCCGCAAATTC 59.389 47.619 0.00 0.00 0.00 2.17
2508 3026 2.042686 TTTCCTGATCTTGGCATCCG 57.957 50.000 0.00 0.00 0.00 4.18
2517 3035 0.749454 GTGGCGCCATTTCCTGATCT 60.749 55.000 35.23 0.00 0.00 2.75
2518 3036 1.729881 GTGGCGCCATTTCCTGATC 59.270 57.895 35.23 12.77 0.00 2.92
2532 3050 0.523072 ATTGCTGACATGTTCGTGGC 59.477 50.000 0.00 1.34 0.00 5.01
2536 3054 2.998670 AGACTGATTGCTGACATGTTCG 59.001 45.455 0.00 0.00 0.00 3.95
2542 3060 3.555795 GGAAGTGAGACTGATTGCTGACA 60.556 47.826 0.00 0.00 0.00 3.58
2568 3086 4.532521 AGAGACTAAAGCCTGCTAGGAAAA 59.467 41.667 6.40 0.00 37.67 2.29
2574 3092 5.511363 ACTTCTAGAGACTAAAGCCTGCTA 58.489 41.667 0.00 0.00 0.00 3.49
2578 3096 9.924010 TTATCTAACTTCTAGAGACTAAAGCCT 57.076 33.333 0.00 0.00 0.00 4.58
2590 3108 8.707796 TGGATACCAGGTTATCTAACTTCTAG 57.292 38.462 0.00 0.00 36.47 2.43
2593 3111 7.963532 TGATGGATACCAGGTTATCTAACTTC 58.036 38.462 0.00 0.00 36.75 3.01
2594 3112 7.931015 TGATGGATACCAGGTTATCTAACTT 57.069 36.000 0.00 0.00 36.75 2.66
2595 3113 7.569111 ACTTGATGGATACCAGGTTATCTAACT 59.431 37.037 0.00 0.00 36.75 2.24
2596 3114 7.736893 ACTTGATGGATACCAGGTTATCTAAC 58.263 38.462 0.00 0.00 36.75 2.34
2597 3115 7.567250 TGACTTGATGGATACCAGGTTATCTAA 59.433 37.037 0.00 0.00 36.75 2.10
2598 3116 7.015292 GTGACTTGATGGATACCAGGTTATCTA 59.985 40.741 0.00 0.00 36.75 1.98
2599 3117 5.905331 TGACTTGATGGATACCAGGTTATCT 59.095 40.000 0.00 0.00 36.75 1.98
2600 3118 5.992217 GTGACTTGATGGATACCAGGTTATC 59.008 44.000 0.00 0.00 36.75 1.75
2611 3129 5.447778 AAATCAGGAGTGACTTGATGGAT 57.552 39.130 0.87 0.00 43.00 3.41
2616 3134 5.545063 TGTGTAAATCAGGAGTGACTTGA 57.455 39.130 0.00 0.00 38.88 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.