Multiple sequence alignment - TraesCS5A01G366200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G366200 chr5A 100.000 7396 0 0 1 7396 565766909 565774304 0.000000e+00 13658.0
1 TraesCS5A01G366200 chr5A 91.892 259 21 0 6940 7198 681639284 681639542 5.450000e-96 363.0
2 TraesCS5A01G366200 chr5A 91.705 217 14 4 6702 6916 456063213 456063427 1.560000e-76 298.0
3 TraesCS5A01G366200 chr5A 93.421 152 10 0 2156 2307 613088777 613088928 7.470000e-55 226.0
4 TraesCS5A01G366200 chr5A 92.763 152 11 0 2156 2307 170895455 170895606 3.470000e-53 220.0
5 TraesCS5A01G366200 chr5A 92.763 152 11 0 2156 2307 323345963 323346114 3.470000e-53 220.0
6 TraesCS5A01G366200 chr5A 92.763 152 11 0 2156 2307 500383699 500383850 3.470000e-53 220.0
7 TraesCS5A01G366200 chr5A 93.878 49 3 0 6902 6950 565773856 565773904 2.860000e-09 75.0
8 TraesCS5A01G366200 chr5A 93.878 49 3 0 6902 6950 681639292 681639340 2.860000e-09 75.0
9 TraesCS5A01G366200 chr5B 96.366 2174 71 6 4531 6700 546849480 546851649 0.000000e+00 3570.0
10 TraesCS5A01G366200 chr5B 94.042 1779 88 10 4925 6700 546866908 546868671 0.000000e+00 2682.0
11 TraesCS5A01G366200 chr5B 86.402 1787 165 36 4701 6452 546971867 546973610 0.000000e+00 1882.0
12 TraesCS5A01G366200 chr5B 86.346 1787 166 36 4701 6452 546980280 546982023 0.000000e+00 1877.0
13 TraesCS5A01G366200 chr5B 94.824 1024 52 1 5117 6140 546906274 546907296 0.000000e+00 1596.0
14 TraesCS5A01G366200 chr5B 85.922 1378 74 48 652 1971 546845420 546846735 0.000000e+00 1360.0
15 TraesCS5A01G366200 chr5B 92.857 896 42 9 3385 4278 546848458 546849333 0.000000e+00 1280.0
16 TraesCS5A01G366200 chr5B 96.359 714 24 2 2323 3035 546847316 546848028 0.000000e+00 1173.0
17 TraesCS5A01G366200 chr5B 90.520 865 53 7 5836 6697 546994990 546995828 0.000000e+00 1116.0
18 TraesCS5A01G366200 chr5B 92.437 714 43 3 2325 3037 546970343 546971046 0.000000e+00 1009.0
19 TraesCS5A01G366200 chr5B 92.437 714 43 3 2325 3037 546974914 546975617 0.000000e+00 1009.0
20 TraesCS5A01G366200 chr5B 92.437 714 43 3 2325 3037 546978756 546979459 0.000000e+00 1009.0
21 TraesCS5A01G366200 chr5B 80.795 1182 144 47 5420 6583 546855303 546856419 0.000000e+00 848.0
22 TraesCS5A01G366200 chr5B 78.995 1214 172 46 5505 6700 546999596 547000744 0.000000e+00 752.0
23 TraesCS5A01G366200 chr5B 80.815 933 125 34 5501 6411 546881842 546882742 0.000000e+00 682.0
24 TraesCS5A01G366200 chr5B 93.780 418 24 2 6284 6700 546907460 546907876 1.750000e-175 627.0
25 TraesCS5A01G366200 chr5B 93.925 214 11 2 6705 6916 594675658 594675871 9.260000e-84 322.0
26 TraesCS5A01G366200 chr5B 95.628 183 5 3 6166 6347 546907286 546907466 2.610000e-74 291.0
27 TraesCS5A01G366200 chr5B 94.086 186 11 0 4531 4716 546971456 546971641 4.370000e-72 283.0
28 TraesCS5A01G366200 chr5B 94.086 186 11 0 4531 4716 546976027 546976212 4.370000e-72 283.0
29 TraesCS5A01G366200 chr5B 94.086 186 11 0 4531 4716 546979869 546980054 4.370000e-72 283.0
30 TraesCS5A01G366200 chr5B 95.000 160 8 0 4315 4474 546849324 546849483 1.230000e-62 252.0
31 TraesCS5A01G366200 chr5B 91.875 160 13 0 4315 4474 546971300 546971459 2.690000e-54 224.0
32 TraesCS5A01G366200 chr5B 91.875 160 13 0 4315 4474 546975871 546976030 2.690000e-54 224.0
33 TraesCS5A01G366200 chr5B 91.875 160 13 0 4315 4474 546979713 546979872 2.690000e-54 224.0
34 TraesCS5A01G366200 chr5B 94.495 109 6 0 7205 7313 546995826 546995934 1.280000e-37 169.0
35 TraesCS5A01G366200 chr5B 94.495 109 5 1 7272 7379 546995938 546996046 4.590000e-37 167.0
36 TraesCS5A01G366200 chr5B 92.857 98 7 0 7282 7379 546851747 546851844 7.740000e-30 143.0
37 TraesCS5A01G366200 chr5B 91.837 98 7 1 7282 7379 546868769 546868865 1.290000e-27 135.0
38 TraesCS5A01G366200 chr5B 85.859 99 6 4 7282 7380 546907974 546908064 1.700000e-16 99.0
39 TraesCS5A01G366200 chr5D 95.864 2176 79 8 4531 6700 447893160 447895330 0.000000e+00 3509.0
40 TraesCS5A01G366200 chr5D 88.401 1345 89 36 657 1971 447889136 447890443 0.000000e+00 1557.0
41 TraesCS5A01G366200 chr5D 91.499 1141 62 15 3361 4474 447892031 447893163 0.000000e+00 1537.0
42 TraesCS5A01G366200 chr5D 96.369 716 22 3 2323 3037 447891029 447891741 0.000000e+00 1175.0
43 TraesCS5A01G366200 chr5D 95.758 660 26 2 1 659 318819211 318818553 0.000000e+00 1062.0
44 TraesCS5A01G366200 chr5D 95.441 658 27 3 1 657 539720395 539721050 0.000000e+00 1046.0
45 TraesCS5A01G366200 chr5D 80.296 1350 186 45 5351 6685 447899253 447900537 0.000000e+00 946.0
46 TraesCS5A01G366200 chr5D 85.227 440 29 9 1878 2307 447890438 447890851 3.190000e-113 420.0
47 TraesCS5A01G366200 chr5D 90.323 186 16 2 7196 7379 447895313 447895498 7.410000e-60 243.0
48 TraesCS5A01G366200 chr5D 91.346 104 9 0 5291 5394 447977771 447977874 7.740000e-30 143.0
49 TraesCS5A01G366200 chr5D 90.141 71 7 0 5934 6004 447977867 447977937 7.900000e-15 93.5
50 TraesCS5A01G366200 chr6D 95.441 658 28 2 1 657 68858880 68859536 0.000000e+00 1048.0
51 TraesCS5A01G366200 chr6D 85.689 559 37 22 978 1519 12486938 12487470 3.900000e-152 549.0
52 TraesCS5A01G366200 chr6D 90.361 83 5 3 3281 3363 294774841 294774920 1.010000e-18 106.0
53 TraesCS5A01G366200 chr2D 95.159 661 30 2 1 659 314360123 314360783 0.000000e+00 1042.0
54 TraesCS5A01G366200 chr2D 95.152 660 29 3 1 659 555390909 555391566 0.000000e+00 1038.0
55 TraesCS5A01G366200 chr2D 82.099 162 23 5 3128 3289 146237636 146237481 4.660000e-27 134.0
56 TraesCS5A01G366200 chr4B 95.015 662 28 4 1 659 517262692 517263351 0.000000e+00 1035.0
57 TraesCS5A01G366200 chr4B 91.892 259 21 0 6940 7198 1986557 1986815 5.450000e-96 363.0
58 TraesCS5A01G366200 chr4B 89.412 85 5 4 3280 3363 389117521 389117440 3.650000e-18 104.0
59 TraesCS5A01G366200 chr4A 95.137 658 29 3 1 657 597455794 597456449 0.000000e+00 1035.0
60 TraesCS5A01G366200 chr4A 95.137 658 29 3 1 657 597634670 597635325 0.000000e+00 1035.0
61 TraesCS5A01G366200 chr4A 92.776 263 18 1 6940 7201 52610496 52610234 5.420000e-101 379.0
62 TraesCS5A01G366200 chr4A 92.694 219 13 3 6701 6916 52610935 52610717 5.570000e-81 313.0
63 TraesCS5A01G366200 chr4A 91.791 134 11 0 1838 1971 509595789 509595922 3.520000e-43 187.0
64 TraesCS5A01G366200 chr4A 91.667 84 3 4 3285 3368 615196362 615196441 6.060000e-21 113.0
65 TraesCS5A01G366200 chr4A 95.652 46 2 0 6905 6950 52610485 52610440 2.860000e-09 75.0
66 TraesCS5A01G366200 chr1A 95.008 661 30 3 1 660 549500954 549500296 0.000000e+00 1035.0
67 TraesCS5A01G366200 chr1A 93.023 258 17 1 6945 7201 503374816 503374559 7.010000e-100 375.0
68 TraesCS5A01G366200 chr1A 87.843 255 11 8 978 1232 493288796 493289030 1.570000e-71 281.0
69 TraesCS5A01G366200 chr1A 93.289 149 10 0 2159 2307 356015137 356014989 3.470000e-53 220.0
70 TraesCS5A01G366200 chr1A 92.593 54 2 2 2323 2375 411074586 411074534 7.960000e-10 76.8
71 TraesCS5A01G366200 chr1A 90.909 55 4 1 2323 2376 356014814 356014760 1.030000e-08 73.1
72 TraesCS5A01G366200 chr7D 93.916 263 14 2 6940 7201 530030493 530030232 5.380000e-106 396.0
73 TraesCS5A01G366200 chr7D 92.202 218 14 3 6705 6919 89597424 89597207 9.320000e-79 305.0
74 TraesCS5A01G366200 chr7D 73.828 661 144 19 2377 3028 265261329 265261969 1.240000e-57 235.0
75 TraesCS5A01G366200 chr7D 78.355 231 36 10 3564 3789 265262462 265262683 3.600000e-28 137.0
76 TraesCS5A01G366200 chr7D 95.652 46 2 0 6905 6950 530030482 530030437 2.860000e-09 75.0
77 TraesCS5A01G366200 chr6B 93.536 263 16 1 6940 7201 32446627 32446889 2.500000e-104 390.0
78 TraesCS5A01G366200 chr6B 94.787 211 8 2 6701 6911 667201080 667200873 7.160000e-85 326.0
79 TraesCS5A01G366200 chr6B 93.421 76 2 3 3288 3363 434668380 434668452 7.850000e-20 110.0
80 TraesCS5A01G366200 chr2B 93.156 263 17 1 6940 7201 135787979 135788241 1.160000e-102 385.0
81 TraesCS5A01G366200 chr2B 91.635 263 21 1 6940 7201 453225002 453224740 5.450000e-96 363.0
82 TraesCS5A01G366200 chr2B 95.067 223 6 5 6701 6919 135792975 135793196 5.490000e-91 346.0
83 TraesCS5A01G366200 chr2B 94.170 223 8 5 6701 6919 135787541 135787762 1.190000e-87 335.0
84 TraesCS5A01G366200 chr2B 83.613 238 29 8 3053 3289 206287635 206287407 1.620000e-51 215.0
85 TraesCS5A01G366200 chr2B 86.792 106 9 5 3261 3365 602760697 602760798 6.060000e-21 113.0
86 TraesCS5A01G366200 chr2B 97.619 42 1 0 6902 6943 135787987 135788028 1.030000e-08 73.1
87 TraesCS5A01G366200 chr7A 92.015 263 19 2 6940 7201 609580924 609580663 1.170000e-97 368.0
88 TraesCS5A01G366200 chr7A 93.636 220 9 5 6701 6919 9361439 9361224 2.570000e-84 324.0
89 TraesCS5A01G366200 chr7A 92.202 218 14 3 6701 6916 609581352 609581136 9.320000e-79 305.0
90 TraesCS5A01G366200 chr7A 73.035 649 137 26 2391 3028 290284767 290285388 2.110000e-45 195.0
91 TraesCS5A01G366200 chr7A 77.826 230 38 7 3564 3789 290285880 290286100 6.020000e-26 130.0
92 TraesCS5A01G366200 chr7A 92.593 54 2 2 2323 2375 59688834 59688886 7.960000e-10 76.8
93 TraesCS5A01G366200 chr7A 95.652 46 2 0 6905 6950 9360992 9360947 2.860000e-09 75.0
94 TraesCS5A01G366200 chr7A 95.652 46 2 0 6905 6950 609580913 609580868 2.860000e-09 75.0
95 TraesCS5A01G366200 chr3D 85.659 258 13 11 981 1238 450574738 450574505 4.430000e-62 250.0
96 TraesCS5A01G366200 chr3D 84.151 265 14 9 978 1232 281082673 281082919 1.600000e-56 231.0
97 TraesCS5A01G366200 chr7B 73.867 662 141 21 2377 3028 245674246 245674885 1.240000e-57 235.0
98 TraesCS5A01G366200 chr7B 79.295 227 38 8 3564 3789 245675364 245675582 4.620000e-32 150.0
99 TraesCS5A01G366200 chr6A 93.289 149 10 0 2159 2307 308787180 308787032 3.470000e-53 220.0
100 TraesCS5A01G366200 chr6A 89.412 85 5 3 3288 3368 291332381 291332465 3.650000e-18 104.0
101 TraesCS5A01G366200 chr6A 92.593 54 2 2 2323 2375 65351666 65351718 7.960000e-10 76.8
102 TraesCS5A01G366200 chr3A 92.763 152 11 0 2156 2307 404762247 404762398 3.470000e-53 220.0
103 TraesCS5A01G366200 chr3A 93.333 150 9 1 2159 2307 526715277 526715128 3.470000e-53 220.0
104 TraesCS5A01G366200 chr4D 83.529 255 20 7 978 1232 500037380 500037612 1.250000e-52 219.0
105 TraesCS5A01G366200 chr1D 90.805 87 3 5 3286 3372 118886244 118886163 2.180000e-20 111.0
106 TraesCS5A01G366200 chrUn 90.123 81 6 2 3288 3367 110687484 110687405 3.650000e-18 104.0
107 TraesCS5A01G366200 chr1B 88.043 92 4 6 3276 3365 344044754 344044840 1.310000e-17 102.0
108 TraesCS5A01G366200 chr3B 93.878 49 3 0 6902 6950 59960163 59960211 2.860000e-09 75.0
109 TraesCS5A01G366200 chr3B 95.652 46 2 0 6905 6950 742462090 742462045 2.860000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G366200 chr5A 565766909 565774304 7395 False 6866.500000 13658 96.939000 1 7396 2 chr5A.!!$F6 7395
1 TraesCS5A01G366200 chr5B 546866908 546868865 1957 False 1408.500000 2682 92.939500 4925 7379 2 chr5B.!!$F4 2454
2 TraesCS5A01G366200 chr5B 546845420 546856419 10999 False 1232.285714 3570 91.450857 652 7379 7 chr5B.!!$F3 6727
3 TraesCS5A01G366200 chr5B 546970343 546982023 11680 False 755.181818 1882 91.631091 2325 6452 11 chr5B.!!$F6 4127
4 TraesCS5A01G366200 chr5B 546881842 546882742 900 False 682.000000 682 80.815000 5501 6411 1 chr5B.!!$F1 910
5 TraesCS5A01G366200 chr5B 546906274 546908064 1790 False 653.250000 1596 92.522750 5117 7380 4 chr5B.!!$F5 2263
6 TraesCS5A01G366200 chr5B 546994990 547000744 5754 False 551.000000 1116 89.626250 5505 7379 4 chr5B.!!$F7 1874
7 TraesCS5A01G366200 chr5D 447889136 447900537 11401 False 1341.000000 3509 89.711286 657 7379 7 chr5D.!!$F2 6722
8 TraesCS5A01G366200 chr5D 318818553 318819211 658 True 1062.000000 1062 95.758000 1 659 1 chr5D.!!$R1 658
9 TraesCS5A01G366200 chr5D 539720395 539721050 655 False 1046.000000 1046 95.441000 1 657 1 chr5D.!!$F1 656
10 TraesCS5A01G366200 chr6D 68858880 68859536 656 False 1048.000000 1048 95.441000 1 657 1 chr6D.!!$F2 656
11 TraesCS5A01G366200 chr6D 12486938 12487470 532 False 549.000000 549 85.689000 978 1519 1 chr6D.!!$F1 541
12 TraesCS5A01G366200 chr2D 314360123 314360783 660 False 1042.000000 1042 95.159000 1 659 1 chr2D.!!$F1 658
13 TraesCS5A01G366200 chr2D 555390909 555391566 657 False 1038.000000 1038 95.152000 1 659 1 chr2D.!!$F2 658
14 TraesCS5A01G366200 chr4B 517262692 517263351 659 False 1035.000000 1035 95.015000 1 659 1 chr4B.!!$F2 658
15 TraesCS5A01G366200 chr4A 597455794 597456449 655 False 1035.000000 1035 95.137000 1 657 1 chr4A.!!$F2 656
16 TraesCS5A01G366200 chr4A 597634670 597635325 655 False 1035.000000 1035 95.137000 1 657 1 chr4A.!!$F3 656
17 TraesCS5A01G366200 chr4A 52610234 52610935 701 True 255.666667 379 93.707333 6701 7201 3 chr4A.!!$R1 500
18 TraesCS5A01G366200 chr1A 549500296 549500954 658 True 1035.000000 1035 95.008000 1 660 1 chr1A.!!$R3 659
19 TraesCS5A01G366200 chr2B 135787541 135788241 700 False 264.366667 385 94.981667 6701 7201 3 chr2B.!!$F3 500
20 TraesCS5A01G366200 chr7A 609580663 609581352 689 True 249.333333 368 93.289667 6701 7201 3 chr7A.!!$R2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.535780 GCAATCTCGATGGGGCATCA 60.536 55.000 0.00 0.00 40.54 3.07 F
1187 1223 0.783850 CCCTTTCCCTTTCCTCCCAA 59.216 55.000 0.00 0.00 0.00 4.12 F
1998 2199 0.246635 ATCGAACCTGGTGAACCTCG 59.753 55.000 10.76 10.76 36.82 4.63 F
2004 2205 0.606401 CCTGGTGAACCTCGCACATT 60.606 55.000 0.37 0.00 37.99 2.71 F
2336 2700 0.971386 AGCCCAAGCCTCAATTGTTG 59.029 50.000 5.13 2.54 41.25 3.33 F
2790 3155 1.276421 AGCGCTATTGGAACACACTCT 59.724 47.619 8.99 0.00 39.29 3.24 F
4751 5476 1.155042 CAGCTGTGTTCCTTCTCTGC 58.845 55.000 5.25 0.00 0.00 4.26 F
5268 6008 0.033228 CTCGGGCATCATCCTCTGTC 59.967 60.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1866 0.546598 CCTTGGAAACCCGCCTAGAT 59.453 55.000 0.00 0.0 31.12 1.98 R
2311 2513 0.322816 TTGAGGCTTGGGCTTAGCAG 60.323 55.000 6.53 0.0 38.98 4.24 R
3947 4416 1.276989 AGCAATGCCCACTCCAAATTG 59.723 47.619 0.00 0.0 0.00 2.32 R
4111 4586 7.881751 TGCTGCTTCAGATATTATAGCAAAGAT 59.118 33.333 0.00 0.0 40.90 2.40 R
4267 4750 1.103398 ACAAGAGGCTGTGCAACCAC 61.103 55.000 0.00 0.0 42.40 4.16 R
4772 5497 3.990092 TGCGACCACATAATCATAGGTC 58.010 45.455 0.00 0.0 44.05 3.85 R
5802 6565 1.723608 TTGTGTTCGCAGGTGCAAGG 61.724 55.000 2.33 0.0 42.21 3.61 R
6870 13127 0.038892 GCGTGGTGGTACTTCTTCGA 60.039 55.000 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 0.535780 GCAATCTCGATGGGGCATCA 60.536 55.000 0.00 0.00 40.54 3.07
254 255 2.076863 GAGTAGCGGCAACATTTGAGT 58.923 47.619 1.45 0.00 0.00 3.41
323 325 4.808558 GCAACTGCAGAATGATTTGGTTA 58.191 39.130 23.35 0.00 39.69 2.85
354 356 2.094545 GGACTCATGTTGGCAACCAATC 60.095 50.000 26.31 15.87 45.80 2.67
366 368 5.432645 TGGCAACCAATCGATGTATCTTTA 58.567 37.500 0.00 0.00 0.00 1.85
495 500 6.958752 CACAATATGTTGAATGCAATGCAAAG 59.041 34.615 13.45 0.00 45.25 2.77
528 533 1.227823 GGCCACGCCTGCACATATA 60.228 57.895 0.00 0.00 46.69 0.86
542 547 1.343142 ACATATAGGTCGGCGCATTGA 59.657 47.619 10.83 0.00 0.00 2.57
639 645 2.030401 CGCCGTTCATTTGGGTCGA 61.030 57.895 0.00 0.00 0.00 4.20
662 668 4.222145 ACCCGTTGAAGTTGCTCTTAGATA 59.778 41.667 0.00 0.00 36.40 1.98
670 676 8.087982 TGAAGTTGCTCTTAGATAACACTTTG 57.912 34.615 10.58 0.00 36.40 2.77
697 710 2.526304 TATACTTGCCATGCCGTCTC 57.474 50.000 0.00 0.00 0.00 3.36
728 741 1.068434 ACCAAATGGCAACTCAAACCG 59.932 47.619 0.00 0.00 39.32 4.44
748 765 2.676342 CGTACCATACAAAAGCCCTCAC 59.324 50.000 0.00 0.00 0.00 3.51
754 771 2.457366 ACAAAAGCCCTCACTAGTCG 57.543 50.000 0.00 0.00 0.00 4.18
833 852 0.979665 CCAGATCACCATCGGGCTAT 59.020 55.000 0.00 0.00 37.53 2.97
849 868 3.558109 GGGCTATAGAGAGAAACCCATGC 60.558 52.174 3.21 0.00 35.84 4.06
960 993 5.345741 CCATTATTCTTGCACTGGAAAAACG 59.654 40.000 0.00 0.00 0.00 3.60
1187 1223 0.783850 CCCTTTCCCTTTCCTCCCAA 59.216 55.000 0.00 0.00 0.00 4.12
1223 1268 2.041762 AGCAGCTGGGATGGGAGA 59.958 61.111 17.12 0.00 0.00 3.71
1243 1288 2.278271 GTACGCGCTCTCTGCTCC 60.278 66.667 5.73 0.00 40.11 4.70
1263 1308 1.964891 CCGATCCCTAGCTCGCGTA 60.965 63.158 5.77 0.00 33.63 4.42
1508 1575 4.179579 GCCCGTGCTCGATTTGGC 62.180 66.667 10.21 9.95 39.71 4.52
1524 1606 2.579738 GCGTGGTTCCTCCTCCTC 59.420 66.667 0.00 0.00 37.07 3.71
1612 1713 5.215160 GTCTGAAATGGTTGCTTGTTACTG 58.785 41.667 0.00 0.00 0.00 2.74
1627 1728 6.348540 GCTTGTTACTGGTGATTAAACTGGAG 60.349 42.308 0.00 0.00 0.00 3.86
1720 1825 7.445402 GCTAAATTATCCACTTATGCTCTGGAA 59.555 37.037 0.00 0.00 37.62 3.53
1728 1833 3.135530 ACTTATGCTCTGGAATGAGGTCC 59.864 47.826 0.00 0.00 38.27 4.46
1761 1866 2.819608 GTTTGGTCTATTTCTGGCTGCA 59.180 45.455 0.50 0.00 0.00 4.41
1816 1921 5.221028 CCATGCAAATGTAGGCGATTTAGAA 60.221 40.000 0.00 0.00 0.00 2.10
1825 1930 1.596727 GGCGATTTAGAAGAGCTGCAG 59.403 52.381 10.11 10.11 0.00 4.41
1862 1968 2.314246 TGTCAATGAATGGTGGTGCAA 58.686 42.857 0.00 0.00 0.00 4.08
1879 1985 2.286359 TGCAATATCGCGATGTTTCTGC 60.286 45.455 31.05 27.55 33.35 4.26
1976 2177 5.011023 CCAAGTTAGCCCTTGTCTGAATTTT 59.989 40.000 7.38 0.00 40.17 1.82
1986 2187 4.159377 TGTCTGAATTTTGCATCGAACC 57.841 40.909 0.00 0.00 0.00 3.62
1990 2191 2.890311 TGAATTTTGCATCGAACCTGGT 59.110 40.909 0.00 0.00 0.00 4.00
1991 2192 3.244976 GAATTTTGCATCGAACCTGGTG 58.755 45.455 0.00 0.00 0.00 4.17
1992 2193 1.974265 TTTTGCATCGAACCTGGTGA 58.026 45.000 0.00 0.00 0.00 4.02
1993 2194 1.974265 TTTGCATCGAACCTGGTGAA 58.026 45.000 0.00 0.00 0.00 3.18
1994 2195 1.234821 TTGCATCGAACCTGGTGAAC 58.765 50.000 0.00 0.00 0.00 3.18
1995 2196 0.605319 TGCATCGAACCTGGTGAACC 60.605 55.000 0.00 0.00 0.00 3.62
1996 2197 0.321653 GCATCGAACCTGGTGAACCT 60.322 55.000 0.00 0.00 36.82 3.50
1997 2198 1.726853 CATCGAACCTGGTGAACCTC 58.273 55.000 0.00 0.00 36.82 3.85
1998 2199 0.246635 ATCGAACCTGGTGAACCTCG 59.753 55.000 10.76 10.76 36.82 4.63
1999 2200 2.027625 CGAACCTGGTGAACCTCGC 61.028 63.158 0.00 0.00 36.82 5.03
2000 2201 1.070786 GAACCTGGTGAACCTCGCA 59.929 57.895 0.00 0.00 36.82 5.10
2001 2202 1.227853 AACCTGGTGAACCTCGCAC 60.228 57.895 0.00 0.00 36.82 5.34
2002 2203 1.978455 AACCTGGTGAACCTCGCACA 61.978 55.000 0.00 0.00 37.99 4.57
2003 2204 1.003355 CCTGGTGAACCTCGCACAT 60.003 57.895 0.37 0.00 37.99 3.21
2004 2205 0.606401 CCTGGTGAACCTCGCACATT 60.606 55.000 0.37 0.00 37.99 2.71
2032 2233 6.235231 AGAAAACTCTTACTGGTCAAGTGA 57.765 37.500 0.00 0.00 40.26 3.41
2039 2240 1.609208 ACTGGTCAAGTGATGGCAAC 58.391 50.000 0.00 0.00 37.88 4.17
2045 2246 9.741638 TACTGGTCAAGTGATGGCAACAACTTA 62.742 40.741 11.09 0.00 43.93 2.24
2058 2259 7.684062 GGCAACAACTTACATGCTAATAATG 57.316 36.000 0.00 0.00 38.79 1.90
2106 2307 4.497006 GCCACATGTCAGATATCTTTGTGC 60.497 45.833 19.75 14.68 0.00 4.57
2108 2309 5.448225 CCACATGTCAGATATCTTTGTGCAC 60.448 44.000 10.75 10.75 0.00 4.57
2127 2328 1.875963 GGTGGTCTTCCGCAACATG 59.124 57.895 0.00 0.00 45.25 3.21
2222 2423 8.068892 TCTGTTTTTAAAAAGGAAAGCCAGTA 57.931 30.769 13.58 4.28 36.29 2.74
2228 2429 7.648039 TTAAAAAGGAAAGCCAGTAGTTCAA 57.352 32.000 0.00 0.00 36.29 2.69
2231 2432 1.464997 GGAAAGCCAGTAGTTCAAGCG 59.535 52.381 0.00 0.00 0.00 4.68
2248 2450 7.595130 AGTTCAAGCGTCAAGAAAATAATTTCC 59.405 33.333 0.00 0.00 44.96 3.13
2307 2509 7.331687 TCGGCATGTACATTTCTGTCATATATG 59.668 37.037 5.37 6.36 36.79 1.78
2308 2510 7.118245 CGGCATGTACATTTCTGTCATATATGT 59.882 37.037 5.37 0.00 36.79 2.29
2309 2511 8.786898 GGCATGTACATTTCTGTCATATATGTT 58.213 33.333 5.37 0.00 36.79 2.71
2320 2522 7.378966 TCTGTCATATATGTTACTGCTAAGCC 58.621 38.462 12.42 0.00 0.00 4.35
2332 2696 1.272648 TGCTAAGCCCAAGCCTCAATT 60.273 47.619 0.60 0.00 41.25 2.32
2336 2700 0.971386 AGCCCAAGCCTCAATTGTTG 59.029 50.000 5.13 2.54 41.25 3.33
2521 2886 4.459337 GGCATTTATACTCCCATGGTAAGC 59.541 45.833 11.73 3.28 0.00 3.09
2539 2904 6.775629 TGGTAAGCCTTAAAAAGACTCATTGT 59.224 34.615 0.00 0.00 35.27 2.71
2616 2981 3.673902 TCATTTCCACTCTTCGCATCAA 58.326 40.909 0.00 0.00 0.00 2.57
2790 3155 1.276421 AGCGCTATTGGAACACACTCT 59.724 47.619 8.99 0.00 39.29 3.24
3108 3517 8.238481 GAATTTTACGGCATGAAAAATTCTGA 57.762 30.769 23.82 0.00 46.37 3.27
3196 3610 9.708222 GTGCTTGTATGTGAGATATACAAAAAG 57.292 33.333 10.60 2.86 45.28 2.27
3213 3627 7.245419 ACAAAAAGGACAAATACATGCAAAC 57.755 32.000 0.00 0.00 0.00 2.93
3217 3631 7.856145 AAAGGACAAATACATGCAAACAAAA 57.144 28.000 0.00 0.00 0.00 2.44
3218 3632 7.856145 AAGGACAAATACATGCAAACAAAAA 57.144 28.000 0.00 0.00 0.00 1.94
3219 3633 8.449251 AAGGACAAATACATGCAAACAAAAAT 57.551 26.923 0.00 0.00 0.00 1.82
3220 3634 8.449251 AGGACAAATACATGCAAACAAAAATT 57.551 26.923 0.00 0.00 0.00 1.82
3221 3635 8.344098 AGGACAAATACATGCAAACAAAAATTG 58.656 29.630 0.00 0.00 0.00 2.32
3222 3636 7.590689 GGACAAATACATGCAAACAAAAATTGG 59.409 33.333 0.00 0.00 34.12 3.16
3252 3666 4.737855 TTTTGTTGATTTTGGGACGGAA 57.262 36.364 0.00 0.00 0.00 4.30
3265 3679 4.939271 TGGGACGGAATTTTGTCTTTTTC 58.061 39.130 9.88 0.00 35.45 2.29
3267 3681 5.128008 TGGGACGGAATTTTGTCTTTTTCTT 59.872 36.000 9.88 0.00 35.45 2.52
3302 3716 2.642171 AATGTACTCCCTCTGTCCCA 57.358 50.000 0.00 0.00 0.00 4.37
3303 3717 2.877154 ATGTACTCCCTCTGTCCCAT 57.123 50.000 0.00 0.00 0.00 4.00
3312 3726 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3313 3727 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
3314 3728 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
3315 3729 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
3317 3731 6.295349 CCTCTGTCCCATAATATAAGAACGCT 60.295 42.308 0.00 0.00 0.00 5.07
3319 3733 7.506114 TCTGTCCCATAATATAAGAACGCTTT 58.494 34.615 0.00 0.00 35.56 3.51
3320 3734 7.990886 TCTGTCCCATAATATAAGAACGCTTTT 59.009 33.333 0.00 0.00 35.56 2.27
3321 3735 8.514330 TGTCCCATAATATAAGAACGCTTTTT 57.486 30.769 0.00 0.00 35.56 1.94
3322 3736 9.616156 TGTCCCATAATATAAGAACGCTTTTTA 57.384 29.630 0.00 0.00 35.56 1.52
3323 3737 9.874215 GTCCCATAATATAAGAACGCTTTTTAC 57.126 33.333 0.00 0.00 35.56 2.01
3324 3738 9.616156 TCCCATAATATAAGAACGCTTTTTACA 57.384 29.630 0.00 0.00 35.56 2.41
3325 3739 9.659830 CCCATAATATAAGAACGCTTTTTACAC 57.340 33.333 0.00 0.00 35.56 2.90
3332 3746 6.913873 AAGAACGCTTTTTACACACTAGAA 57.086 33.333 0.00 0.00 0.00 2.10
3333 3747 6.526566 AGAACGCTTTTTACACACTAGAAG 57.473 37.500 0.00 0.00 0.00 2.85
3334 3748 4.727235 ACGCTTTTTACACACTAGAAGC 57.273 40.909 0.00 0.00 36.92 3.86
3336 3750 4.727235 GCTTTTTACACACTAGAAGCGT 57.273 40.909 0.00 0.00 31.51 5.07
3338 3752 5.138095 GCTTTTTACACACTAGAAGCGTTC 58.862 41.667 0.00 0.00 31.51 3.95
3339 3753 5.050295 GCTTTTTACACACTAGAAGCGTTCT 60.050 40.000 0.00 5.74 43.72 3.01
3340 3754 6.511282 GCTTTTTACACACTAGAAGCGTTCTT 60.511 38.462 0.00 0.00 41.14 2.52
3341 3755 7.306983 GCTTTTTACACACTAGAAGCGTTCTTA 60.307 37.037 0.00 0.00 41.14 2.10
3342 3756 8.597662 TTTTTACACACTAGAAGCGTTCTTAT 57.402 30.769 0.00 0.00 41.14 1.73
3343 3757 9.695526 TTTTTACACACTAGAAGCGTTCTTATA 57.304 29.630 0.00 0.00 41.14 0.98
3344 3758 9.865321 TTTTACACACTAGAAGCGTTCTTATAT 57.135 29.630 0.00 0.00 41.14 0.86
3345 3759 9.865321 TTTACACACTAGAAGCGTTCTTATATT 57.135 29.630 0.00 0.00 41.14 1.28
3349 3763 8.916654 CACACTAGAAGCGTTCTTATATTATGG 58.083 37.037 0.00 0.00 41.14 2.74
3350 3764 8.088981 ACACTAGAAGCGTTCTTATATTATGGG 58.911 37.037 0.00 0.00 41.14 4.00
3351 3765 8.304596 CACTAGAAGCGTTCTTATATTATGGGA 58.695 37.037 0.00 0.00 41.14 4.37
3352 3766 8.305317 ACTAGAAGCGTTCTTATATTATGGGAC 58.695 37.037 0.00 0.00 41.14 4.46
3353 3767 6.157211 AGAAGCGTTCTTATATTATGGGACG 58.843 40.000 7.50 7.50 36.36 4.79
3354 3768 4.817517 AGCGTTCTTATATTATGGGACGG 58.182 43.478 11.52 0.00 0.00 4.79
3355 3769 4.525487 AGCGTTCTTATATTATGGGACGGA 59.475 41.667 11.52 0.00 0.00 4.69
3356 3770 4.863131 GCGTTCTTATATTATGGGACGGAG 59.137 45.833 11.52 0.00 0.00 4.63
3357 3771 5.408356 CGTTCTTATATTATGGGACGGAGG 58.592 45.833 0.00 0.00 0.00 4.30
3358 3772 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3359 3773 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3414 3871 4.511454 ACCACATGCATACGTATTCATGTC 59.489 41.667 35.50 14.13 43.62 3.06
3494 3951 2.042639 GCTCCAATGCCCCCATGT 60.043 61.111 0.00 0.00 0.00 3.21
3506 3963 1.568597 CCCCCATGTTCCATAAGTCCA 59.431 52.381 0.00 0.00 0.00 4.02
3664 4121 5.741388 ACTTTCTTGAACTGTGTTAGCAG 57.259 39.130 0.00 0.00 41.92 4.24
3665 4122 5.428253 ACTTTCTTGAACTGTGTTAGCAGA 58.572 37.500 0.00 0.00 39.62 4.26
3947 4416 4.488126 TTACTGTGACAGCTTGCAATTC 57.512 40.909 13.37 0.00 34.37 2.17
3989 4458 4.260985 TGTTCTTGTTCTCTGCTTTGTCA 58.739 39.130 0.00 0.00 0.00 3.58
3994 4463 7.566760 TCTTGTTCTCTGCTTTGTCAATAAA 57.433 32.000 0.00 0.00 0.00 1.40
4156 4639 2.879756 GCACCTTTCCACCATTAGCTGA 60.880 50.000 0.00 0.00 0.00 4.26
4183 4666 3.806949 ATCCCAAGACTGTTTGCCTTA 57.193 42.857 0.00 0.00 0.00 2.69
4199 4682 3.559655 TGCCTTATATTTGCTGCACTACG 59.440 43.478 0.00 0.00 0.00 3.51
4218 4701 2.360801 ACGTGCTATGTTGGCAAAGTTT 59.639 40.909 0.00 0.00 41.54 2.66
4230 4713 3.638484 GGCAAAGTTTTGACGCTGTTAT 58.362 40.909 8.70 0.00 40.55 1.89
4239 4722 7.960793 AGTTTTGACGCTGTTATCTATGTTAC 58.039 34.615 0.00 0.00 0.00 2.50
4300 4783 3.130633 CCTCTTGTCACAACACATCGAA 58.869 45.455 0.00 0.00 34.35 3.71
4301 4784 3.748048 CCTCTTGTCACAACACATCGAAT 59.252 43.478 0.00 0.00 34.35 3.34
4302 4785 4.377738 CCTCTTGTCACAACACATCGAATG 60.378 45.833 0.00 0.00 34.35 2.67
4303 4786 2.967459 TGTCACAACACATCGAATGC 57.033 45.000 0.00 0.00 0.00 3.56
4429 4912 1.787155 CGCTTACCTATAGTGCTTGCG 59.213 52.381 0.00 4.77 35.22 4.85
4474 4957 6.202516 AGCATCACTCACTAGTTCTTACTC 57.797 41.667 0.00 0.00 35.78 2.59
4475 4958 5.126384 AGCATCACTCACTAGTTCTTACTCC 59.874 44.000 0.00 0.00 35.78 3.85
4476 4959 5.680151 GCATCACTCACTAGTTCTTACTCCC 60.680 48.000 0.00 0.00 35.78 4.30
4477 4960 5.258216 TCACTCACTAGTTCTTACTCCCT 57.742 43.478 0.00 0.00 35.78 4.20
4478 4961 5.254901 TCACTCACTAGTTCTTACTCCCTC 58.745 45.833 0.00 0.00 35.78 4.30
4479 4962 5.014333 TCACTCACTAGTTCTTACTCCCTCT 59.986 44.000 0.00 0.00 35.78 3.69
4480 4963 5.124776 CACTCACTAGTTCTTACTCCCTCTG 59.875 48.000 0.00 0.00 35.78 3.35
4481 4964 5.222171 ACTCACTAGTTCTTACTCCCTCTGT 60.222 44.000 0.00 0.00 35.78 3.41
4482 4965 6.012683 ACTCACTAGTTCTTACTCCCTCTGTA 60.013 42.308 0.00 0.00 35.78 2.74
4483 4966 6.787170 TCACTAGTTCTTACTCCCTCTGTAA 58.213 40.000 0.00 0.00 35.78 2.41
4484 4967 7.236529 TCACTAGTTCTTACTCCCTCTGTAAA 58.763 38.462 0.00 0.00 35.78 2.01
4485 4968 7.176340 TCACTAGTTCTTACTCCCTCTGTAAAC 59.824 40.741 0.00 0.00 35.78 2.01
4486 4969 7.008941 ACTAGTTCTTACTCCCTCTGTAAACA 58.991 38.462 0.00 0.00 35.78 2.83
4487 4970 6.936968 AGTTCTTACTCCCTCTGTAAACAT 57.063 37.500 0.00 0.00 30.72 2.71
4488 4971 9.186837 CTAGTTCTTACTCCCTCTGTAAACATA 57.813 37.037 0.00 0.00 35.78 2.29
4489 4972 8.611051 AGTTCTTACTCCCTCTGTAAACATAT 57.389 34.615 0.00 0.00 30.72 1.78
4490 4973 9.710818 AGTTCTTACTCCCTCTGTAAACATATA 57.289 33.333 0.00 0.00 30.72 0.86
4497 4980 9.830186 ACTCCCTCTGTAAACATATATAGTGAT 57.170 33.333 0.00 0.00 0.00 3.06
4750 5475 2.298446 TCTCAGCTGTGTTCCTTCTCTG 59.702 50.000 14.67 0.00 0.00 3.35
4751 5476 1.155042 CAGCTGTGTTCCTTCTCTGC 58.845 55.000 5.25 0.00 0.00 4.26
4772 5497 3.999663 GCATTCTTTATCAGGGGATCTCG 59.000 47.826 0.00 0.00 34.89 4.04
4971 5696 3.146066 CAGGTAAGCTGCCTGTGTAAAA 58.854 45.455 22.67 0.00 46.22 1.52
4975 5700 0.890683 AGCTGCCTGTGTAAAATGCC 59.109 50.000 0.00 0.00 0.00 4.40
4977 5702 1.669795 GCTGCCTGTGTAAAATGCCAC 60.670 52.381 0.00 0.00 0.00 5.01
4984 5709 5.698545 GCCTGTGTAAAATGCCACATTTTTA 59.301 36.000 19.87 9.78 40.53 1.52
4988 5713 9.994432 CTGTGTAAAATGCCACATTTTTAAAAA 57.006 25.926 19.87 15.38 40.53 1.94
5127 5867 1.355720 CCTGGGATGGTTCCTTCAACT 59.644 52.381 6.98 0.00 42.20 3.16
5268 6008 0.033228 CTCGGGCATCATCCTCTGTC 59.967 60.000 0.00 0.00 0.00 3.51
5394 6134 3.388552 TCAAGGAGTGAGATGAGGCTA 57.611 47.619 0.00 0.00 0.00 3.93
5491 6231 2.757980 TTTAAGCAGCCCGGTCCACC 62.758 60.000 0.00 0.00 0.00 4.61
5589 6329 0.111639 TTACAAGGCCACCTGTTCCC 59.888 55.000 5.01 0.00 32.13 3.97
5802 6565 0.890683 CAGGCAACCATGGGAGAAAC 59.109 55.000 18.09 0.86 37.17 2.78
5865 6628 1.203287 CAGCCGTCTGAGAGATTGACA 59.797 52.381 0.00 0.00 42.95 3.58
6442 12207 5.007234 TGACTTTGTTCACATTACGGACTTG 59.993 40.000 0.00 0.00 0.00 3.16
6532 12297 1.719780 CAACTGTCTTAGCGTTCGACC 59.280 52.381 0.00 0.00 0.00 4.79
6548 12317 2.933906 TCGACCGCTTTATTTCCATGTC 59.066 45.455 0.00 0.00 0.00 3.06
6562 12332 3.544684 TCCATGTCGAGGGAATGAATTG 58.455 45.455 0.00 0.00 0.00 2.32
6566 12336 4.014569 TGTCGAGGGAATGAATTGAACA 57.985 40.909 0.00 0.00 0.00 3.18
6644 12414 8.902806 GTGAGATGGGTATGATTACAATTGAAA 58.097 33.333 13.59 0.00 0.00 2.69
6688 12458 5.163764 TGAGTTCATGGCTAATTAAACTGCG 60.164 40.000 3.33 0.00 0.00 5.18
6690 12460 2.357637 TCATGGCTAATTAAACTGCGGC 59.642 45.455 0.00 0.00 0.00 6.53
6691 12461 2.122783 TGGCTAATTAAACTGCGGCT 57.877 45.000 0.00 0.00 0.00 5.52
6692 12462 2.442413 TGGCTAATTAAACTGCGGCTT 58.558 42.857 0.00 0.00 0.00 4.35
6693 12463 3.611970 TGGCTAATTAAACTGCGGCTTA 58.388 40.909 0.00 0.00 0.00 3.09
6695 12465 4.642885 TGGCTAATTAAACTGCGGCTTATT 59.357 37.500 0.00 0.00 0.00 1.40
6697 12467 6.017440 TGGCTAATTAAACTGCGGCTTATTAG 60.017 38.462 0.00 3.03 0.00 1.73
6698 12468 6.017357 GGCTAATTAAACTGCGGCTTATTAGT 60.017 38.462 0.00 0.00 0.00 2.24
6699 12469 6.851330 GCTAATTAAACTGCGGCTTATTAGTG 59.149 38.462 0.00 0.00 0.00 2.74
6766 12640 3.345028 ATCCAGCTTGCTGGGGCT 61.345 61.111 33.12 19.51 44.34 5.19
6900 13157 1.376424 CACCACGCTTCCAGCATCT 60.376 57.895 0.00 0.00 42.58 2.90
6907 13164 2.687842 CTTCCAGCATCTCGAAGCC 58.312 57.895 1.07 0.00 0.00 4.35
6908 13165 1.150567 CTTCCAGCATCTCGAAGCCG 61.151 60.000 1.07 0.00 37.07 5.52
6910 13167 3.267860 CAGCATCTCGAAGCCGCC 61.268 66.667 1.07 0.00 35.37 6.13
6912 13169 4.838152 GCATCTCGAAGCCGCCCA 62.838 66.667 0.00 0.00 35.37 5.36
6914 13171 4.162690 ATCTCGAAGCCGCCCACC 62.163 66.667 0.00 0.00 35.37 4.61
6928 13545 2.598099 CACCAGCATGTGCCACCA 60.598 61.111 0.57 0.00 43.38 4.17
6930 13547 3.740397 CCAGCATGTGCCACCACG 61.740 66.667 0.57 0.00 45.04 4.94
6934 13551 1.969064 GCATGTGCCACCACGGTTA 60.969 57.895 0.00 0.00 45.04 2.85
7187 14202 1.344087 ACCCGGACAGTCCCTATCATT 60.344 52.381 14.46 0.00 31.13 2.57
7194 14209 0.107456 AGTCCCTATCATTGCGCTGG 59.893 55.000 9.73 0.00 0.00 4.85
7198 14213 0.947244 CCTATCATTGCGCTGGAACC 59.053 55.000 9.73 0.00 0.00 3.62
7270 14825 3.439540 TTGCAGAATTCCCCGCGC 61.440 61.111 0.00 0.00 0.00 6.86
7317 15070 5.881923 TGTCAAGGATAATGGTAGTACCC 57.118 43.478 16.91 0.43 37.50 3.69
7380 15135 5.744171 TGCTGTAAGGAAGCATCATCTTTA 58.256 37.500 0.00 0.00 45.50 1.85
7383 15138 6.018343 GCTGTAAGGAAGCATCATCTTTAGTC 60.018 42.308 0.00 0.00 40.52 2.59
7384 15139 7.187824 TGTAAGGAAGCATCATCTTTAGTCT 57.812 36.000 0.00 0.00 0.00 3.24
7387 15142 6.305272 AGGAAGCATCATCTTTAGTCTCAA 57.695 37.500 0.00 0.00 0.00 3.02
7389 15144 5.295540 GGAAGCATCATCTTTAGTCTCAACC 59.704 44.000 0.00 0.00 0.00 3.77
7390 15145 5.690464 AGCATCATCTTTAGTCTCAACCT 57.310 39.130 0.00 0.00 0.00 3.50
7391 15146 6.798427 AGCATCATCTTTAGTCTCAACCTA 57.202 37.500 0.00 0.00 0.00 3.08
7392 15147 6.815089 AGCATCATCTTTAGTCTCAACCTAG 58.185 40.000 0.00 0.00 0.00 3.02
7393 15148 5.465056 GCATCATCTTTAGTCTCAACCTAGC 59.535 44.000 0.00 0.00 0.00 3.42
7394 15149 6.685116 GCATCATCTTTAGTCTCAACCTAGCT 60.685 42.308 0.00 0.00 0.00 3.32
7395 15150 7.470702 GCATCATCTTTAGTCTCAACCTAGCTA 60.471 40.741 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 5.542635 TCCAAGTATTAGCAGGATACCGAAT 59.457 40.000 0.00 0.00 31.76 3.34
187 188 3.822735 CCTGAAACTGAAAGCCTTGATCA 59.177 43.478 0.00 0.00 37.60 2.92
254 255 6.816136 TGTCTTCATGAAACTGAGTGAACTA 58.184 36.000 9.88 0.00 0.00 2.24
310 311 7.649306 GTCCACATATGCTTAACCAAATCATTC 59.351 37.037 1.58 0.00 0.00 2.67
323 325 3.949754 CCAACATGAGTCCACATATGCTT 59.050 43.478 1.58 0.00 0.00 3.91
639 645 2.367567 TCTAAGAGCAACTTCAACGGGT 59.632 45.455 0.00 0.00 39.72 5.28
647 653 8.854614 ATCAAAGTGTTATCTAAGAGCAACTT 57.145 30.769 2.10 2.10 42.04 2.66
662 668 8.200792 TGGCAAGTATAAACAAATCAAAGTGTT 58.799 29.630 0.00 0.00 39.63 3.32
670 676 4.739716 CGGCATGGCAAGTATAAACAAATC 59.260 41.667 20.37 0.00 0.00 2.17
697 710 2.890311 TGCCATTTGGTGAGTTTAGGTG 59.110 45.455 0.00 0.00 37.57 4.00
728 741 3.951663 AGTGAGGGCTTTTGTATGGTAC 58.048 45.455 0.00 0.00 0.00 3.34
748 765 1.369625 GTCAACCAATGCCCGACTAG 58.630 55.000 0.00 0.00 0.00 2.57
814 831 0.979665 ATAGCCCGATGGTGATCTGG 59.020 55.000 0.00 0.00 36.33 3.86
825 844 2.091499 TGGGTTTCTCTCTATAGCCCGA 60.091 50.000 0.00 0.00 37.49 5.14
833 852 3.758554 GCTTTTGCATGGGTTTCTCTCTA 59.241 43.478 0.00 0.00 46.58 2.43
849 868 3.380637 CCCTCTCTCATTCATGGCTTTTG 59.619 47.826 0.00 0.00 0.00 2.44
894 916 2.689034 CCTCTGGTGGTCTCCCCC 60.689 72.222 0.00 0.00 0.00 5.40
895 917 2.689034 CCCTCTGGTGGTCTCCCC 60.689 72.222 0.00 0.00 0.00 4.81
896 918 2.689034 CCCCTCTGGTGGTCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
905 927 8.258007 GGAAGATTTTAATTAAAACCCCTCTGG 58.742 37.037 22.35 0.00 37.92 3.86
906 928 8.258007 GGGAAGATTTTAATTAAAACCCCTCTG 58.742 37.037 24.07 0.00 37.92 3.35
907 929 8.184249 AGGGAAGATTTTAATTAAAACCCCTCT 58.816 33.333 27.90 22.11 38.44 3.69
908 930 8.375493 AGGGAAGATTTTAATTAAAACCCCTC 57.625 34.615 27.90 20.91 38.44 4.30
921 954 6.601332 AGAATAATGGCGAGGGAAGATTTTA 58.399 36.000 0.00 0.00 0.00 1.52
1168 1204 0.783850 TTGGGAGGAAAGGGAAAGGG 59.216 55.000 0.00 0.00 0.00 3.95
1187 1223 3.665226 CGCCGATCCGAGCTAGCT 61.665 66.667 19.45 19.45 0.00 3.32
1508 1575 1.305381 AGGAGGAGGAGGAACCACG 60.305 63.158 0.00 0.00 42.04 4.94
1612 1713 6.541934 ACTACTACCTCCAGTTTAATCACC 57.458 41.667 0.00 0.00 0.00 4.02
1627 1728 8.210265 ACCTATTCAGACAGTACTACTACTACC 58.790 40.741 0.00 0.00 31.46 3.18
1679 1780 9.363401 GGATAATTTAGCATAAAGGGGTTTACT 57.637 33.333 0.00 0.00 0.00 2.24
1685 1786 7.839680 AAGTGGATAATTTAGCATAAAGGGG 57.160 36.000 0.00 0.00 0.00 4.79
1728 1833 1.515521 GACCAAACAAGCAGGTCCCG 61.516 60.000 0.00 0.00 44.72 5.14
1737 1842 4.616835 GCAGCCAGAAATAGACCAAACAAG 60.617 45.833 0.00 0.00 0.00 3.16
1761 1866 0.546598 CCTTGGAAACCCGCCTAGAT 59.453 55.000 0.00 0.00 31.12 1.98
1847 1953 2.294233 GCGATATTGCACCACCATTCAT 59.706 45.455 10.24 0.00 34.15 2.57
1862 1968 2.138320 CAGGCAGAAACATCGCGATAT 58.862 47.619 23.22 8.00 0.00 1.63
1879 1985 5.006386 AGCCAACAGAATCTAGAAAACAGG 58.994 41.667 0.00 0.00 0.00 4.00
1976 2177 0.605319 GGTTCACCAGGTTCGATGCA 60.605 55.000 0.00 0.00 35.64 3.96
1986 2187 1.069022 CAAATGTGCGAGGTTCACCAG 60.069 52.381 0.00 0.00 38.89 4.00
1990 2191 2.037902 TCTACCAAATGTGCGAGGTTCA 59.962 45.455 0.00 0.00 35.62 3.18
1991 2192 2.695359 TCTACCAAATGTGCGAGGTTC 58.305 47.619 0.00 0.00 35.62 3.62
1992 2193 2.851263 TCTACCAAATGTGCGAGGTT 57.149 45.000 0.00 0.00 35.62 3.50
1993 2194 2.851263 TTCTACCAAATGTGCGAGGT 57.149 45.000 0.00 0.00 38.14 3.85
1994 2195 3.502211 AGTTTTCTACCAAATGTGCGAGG 59.498 43.478 0.00 0.00 0.00 4.63
1995 2196 4.452455 AGAGTTTTCTACCAAATGTGCGAG 59.548 41.667 0.00 0.00 0.00 5.03
1996 2197 4.385825 AGAGTTTTCTACCAAATGTGCGA 58.614 39.130 0.00 0.00 0.00 5.10
1997 2198 4.749245 AGAGTTTTCTACCAAATGTGCG 57.251 40.909 0.00 0.00 0.00 5.34
1998 2199 7.078228 CAGTAAGAGTTTTCTACCAAATGTGC 58.922 38.462 0.00 0.00 31.96 4.57
1999 2200 7.228706 ACCAGTAAGAGTTTTCTACCAAATGTG 59.771 37.037 0.00 0.00 31.96 3.21
2000 2201 7.287810 ACCAGTAAGAGTTTTCTACCAAATGT 58.712 34.615 0.00 0.00 31.96 2.71
2001 2202 7.444183 TGACCAGTAAGAGTTTTCTACCAAATG 59.556 37.037 0.00 0.00 31.96 2.32
2002 2203 7.514721 TGACCAGTAAGAGTTTTCTACCAAAT 58.485 34.615 0.00 0.00 31.96 2.32
2003 2204 6.891388 TGACCAGTAAGAGTTTTCTACCAAA 58.109 36.000 0.00 0.00 31.96 3.28
2004 2205 6.488769 TGACCAGTAAGAGTTTTCTACCAA 57.511 37.500 0.00 0.00 31.96 3.67
2032 2233 5.920193 ATTAGCATGTAAGTTGTTGCCAT 57.080 34.783 0.00 0.00 35.71 4.40
2053 2254 9.349713 TGACCACAAAAGAAACTAGAACATTAT 57.650 29.630 0.00 0.00 0.00 1.28
2054 2255 8.740123 TGACCACAAAAGAAACTAGAACATTA 57.260 30.769 0.00 0.00 0.00 1.90
2055 2256 7.639113 TGACCACAAAAGAAACTAGAACATT 57.361 32.000 0.00 0.00 0.00 2.71
2058 2259 6.459710 CCCTTGACCACAAAAGAAACTAGAAC 60.460 42.308 0.00 0.00 35.49 3.01
2077 2278 0.994247 ATCTGACATGTGGCCCTTGA 59.006 50.000 1.15 0.00 0.00 3.02
2078 2279 2.715749 TATCTGACATGTGGCCCTTG 57.284 50.000 1.15 2.84 0.00 3.61
2088 2289 3.873361 CCGTGCACAAAGATATCTGACAT 59.127 43.478 18.64 0.00 0.00 3.06
2156 2357 9.507329 ACAATCACTTAACAACATCTATTGAGT 57.493 29.630 0.00 0.00 33.57 3.41
2157 2358 9.764870 CACAATCACTTAACAACATCTATTGAG 57.235 33.333 0.00 0.00 33.57 3.02
2222 2423 7.595130 GGAAATTATTTTCTTGACGCTTGAACT 59.405 33.333 9.34 0.00 40.91 3.01
2228 2429 5.710099 TCTGGGAAATTATTTTCTTGACGCT 59.290 36.000 9.34 0.00 40.91 5.07
2248 2450 4.973168 TGGGCTTAGCAGTAATATTCTGG 58.027 43.478 6.53 0.00 33.98 3.86
2276 2478 6.542005 TGACAGAAATGTACATGCCGATTAAT 59.458 34.615 9.63 0.00 0.00 1.40
2307 2509 1.095600 GGCTTGGGCTTAGCAGTAAC 58.904 55.000 6.53 0.00 40.42 2.50
2308 2510 0.991920 AGGCTTGGGCTTAGCAGTAA 59.008 50.000 6.53 0.00 40.42 2.24
2309 2511 0.541863 GAGGCTTGGGCTTAGCAGTA 59.458 55.000 6.53 0.00 38.98 2.74
2310 2512 1.301293 GAGGCTTGGGCTTAGCAGT 59.699 57.895 6.53 0.85 38.98 4.40
2311 2513 0.322816 TTGAGGCTTGGGCTTAGCAG 60.323 55.000 6.53 0.00 38.98 4.24
2312 2514 0.332632 ATTGAGGCTTGGGCTTAGCA 59.667 50.000 6.53 0.00 38.98 3.49
2313 2515 1.135721 CAATTGAGGCTTGGGCTTAGC 59.864 52.381 0.00 0.00 38.98 3.09
2314 2516 2.450476 ACAATTGAGGCTTGGGCTTAG 58.550 47.619 13.59 0.00 38.98 2.18
2316 2518 1.345415 CAACAATTGAGGCTTGGGCTT 59.655 47.619 13.59 0.00 38.98 4.35
2317 2519 0.971386 CAACAATTGAGGCTTGGGCT 59.029 50.000 13.59 0.00 42.48 5.19
2320 2522 3.731652 TGAACAACAATTGAGGCTTGG 57.268 42.857 13.59 0.00 0.00 3.61
2332 2696 6.424176 TTCAATGTACGAACTTGAACAACA 57.576 33.333 0.00 0.00 34.80 3.33
2336 2700 4.909880 GCCTTTCAATGTACGAACTTGAAC 59.090 41.667 10.42 0.76 38.30 3.18
2732 3097 4.747810 CAAGTTTATGCCTTCCAATCCAC 58.252 43.478 0.00 0.00 0.00 4.02
2790 3155 3.008375 AGCTTCTGCAAGTAGATGTTGGA 59.992 43.478 0.00 0.00 42.74 3.53
2984 3349 3.793465 GCAAAACAGAGCTTCTTCACCAC 60.793 47.826 0.00 0.00 0.00 4.16
2988 3353 3.016031 TGTGCAAAACAGAGCTTCTTCA 58.984 40.909 0.00 0.00 33.78 3.02
3085 3493 8.600449 TTTCAGAATTTTTCATGCCGTAAAAT 57.400 26.923 0.00 0.00 36.48 1.82
3196 3610 7.590689 CCAATTTTTGTTTGCATGTATTTGTCC 59.409 33.333 0.00 0.00 0.00 4.02
3247 3661 7.222031 GCTACAAAGAAAAAGACAAAATTCCGT 59.778 33.333 0.00 0.00 0.00 4.69
3248 3662 7.555582 GCTACAAAGAAAAAGACAAAATTCCG 58.444 34.615 0.00 0.00 0.00 4.30
3296 3710 8.514330 AAAAAGCGTTCTTATATTATGGGACA 57.486 30.769 0.00 0.00 35.33 4.02
3299 3713 9.659830 GTGTAAAAAGCGTTCTTATATTATGGG 57.340 33.333 0.00 0.00 31.02 4.00
3312 3726 4.318546 CGCTTCTAGTGTGTAAAAAGCGTT 60.319 41.667 17.80 0.00 46.48 4.84
3313 3727 3.183775 CGCTTCTAGTGTGTAAAAAGCGT 59.816 43.478 17.80 0.00 46.48 5.07
3314 3728 3.722123 CGCTTCTAGTGTGTAAAAAGCG 58.278 45.455 14.06 14.06 46.48 4.68
3315 3729 4.727235 ACGCTTCTAGTGTGTAAAAAGC 57.273 40.909 3.61 0.00 37.59 3.51
3317 3731 6.913873 AAGAACGCTTCTAGTGTGTAAAAA 57.086 33.333 5.45 0.00 38.11 1.94
3319 3733 9.865321 AATATAAGAACGCTTCTAGTGTGTAAA 57.135 29.630 5.45 0.00 38.11 2.01
3322 3736 9.464714 CATAATATAAGAACGCTTCTAGTGTGT 57.535 33.333 0.00 0.00 38.11 3.72
3323 3737 8.916654 CCATAATATAAGAACGCTTCTAGTGTG 58.083 37.037 0.00 0.00 38.11 3.82
3324 3738 8.088981 CCCATAATATAAGAACGCTTCTAGTGT 58.911 37.037 1.53 0.00 41.35 3.55
3325 3739 8.304596 TCCCATAATATAAGAACGCTTCTAGTG 58.695 37.037 1.53 0.00 39.61 2.74
3326 3740 8.305317 GTCCCATAATATAAGAACGCTTCTAGT 58.695 37.037 1.53 0.00 39.61 2.57
3328 3742 7.310664 CGTCCCATAATATAAGAACGCTTCTA 58.689 38.462 1.53 0.00 39.61 2.10
3330 3744 5.347907 CCGTCCCATAATATAAGAACGCTTC 59.652 44.000 0.00 0.00 35.56 3.86
3332 3746 4.525487 TCCGTCCCATAATATAAGAACGCT 59.475 41.667 0.00 0.00 0.00 5.07
3333 3747 4.813027 TCCGTCCCATAATATAAGAACGC 58.187 43.478 0.00 0.00 0.00 4.84
3334 3748 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3335 3749 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3336 3750 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3338 3752 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3339 3753 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3340 3754 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3341 3755 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3342 3756 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
3343 3757 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3344 3758 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
3345 3759 4.687262 ATAATACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
3349 3763 4.587684 TCTTCAATAATACTCCCTCCGTCC 59.412 45.833 0.00 0.00 0.00 4.79
3350 3764 5.786264 TCTTCAATAATACTCCCTCCGTC 57.214 43.478 0.00 0.00 0.00 4.79
3351 3765 6.555463 TTTCTTCAATAATACTCCCTCCGT 57.445 37.500 0.00 0.00 0.00 4.69
3352 3766 8.451908 AATTTTCTTCAATAATACTCCCTCCG 57.548 34.615 0.00 0.00 0.00 4.63
3383 3797 4.933330 ACGTATGCATGTGGTCTAAGTAG 58.067 43.478 10.16 0.00 0.00 2.57
3436 3893 7.147637 ACCTCCAAAATGGTGCTTAAAAGTTTA 60.148 33.333 0.00 0.00 39.03 2.01
3473 3930 3.543641 GGGGGCATTGGAGCATGC 61.544 66.667 10.51 10.51 42.67 4.06
3475 3932 1.458777 CATGGGGGCATTGGAGCAT 60.459 57.895 0.00 0.00 35.83 3.79
3494 3951 4.640201 GCATGCTAAAGTGGACTTATGGAA 59.360 41.667 11.37 0.00 34.61 3.53
3664 4121 5.350633 CAGAATCAGATGTCAGAAGGTCTC 58.649 45.833 0.00 0.00 0.00 3.36
3665 4122 4.382901 GCAGAATCAGATGTCAGAAGGTCT 60.383 45.833 0.00 0.00 0.00 3.85
3820 4284 1.461091 GCAGCCCACATGCATGCTAT 61.461 55.000 26.53 4.35 43.31 2.97
3821 4285 2.122797 GCAGCCCACATGCATGCTA 61.123 57.895 26.53 5.73 43.31 3.49
3864 4329 2.814336 CAAACCTCTAGAACCAAGTGGC 59.186 50.000 0.00 0.00 39.32 5.01
3928 4397 2.300433 TGAATTGCAAGCTGTCACAGT 58.700 42.857 6.68 0.00 33.43 3.55
3947 4416 1.276989 AGCAATGCCCACTCCAAATTG 59.723 47.619 0.00 0.00 0.00 2.32
4111 4586 7.881751 TGCTGCTTCAGATATTATAGCAAAGAT 59.118 33.333 0.00 0.00 40.90 2.40
4156 4639 4.338879 CAAACAGTCTTGGGATTCCTCAT 58.661 43.478 2.01 0.00 0.00 2.90
4199 4682 4.209080 GTCAAAACTTTGCCAACATAGCAC 59.791 41.667 0.00 0.00 40.69 4.40
4218 4701 6.627243 ACAGTAACATAGATAACAGCGTCAA 58.373 36.000 0.00 0.00 0.00 3.18
4267 4750 1.103398 ACAAGAGGCTGTGCAACCAC 61.103 55.000 0.00 0.00 42.40 4.16
4456 4939 5.124776 CAGAGGGAGTAAGAACTAGTGAGTG 59.875 48.000 0.00 0.00 35.56 3.51
4464 4947 6.936968 ATGTTTACAGAGGGAGTAAGAACT 57.063 37.500 0.00 0.00 39.21 3.01
4520 5003 9.091220 ACTTGTTCTAAATAGTACTTCCTCTGT 57.909 33.333 0.00 0.00 0.00 3.41
4521 5004 9.575783 GACTTGTTCTAAATAGTACTTCCTCTG 57.424 37.037 0.00 0.00 0.00 3.35
4522 5005 9.536510 AGACTTGTTCTAAATAGTACTTCCTCT 57.463 33.333 0.00 0.00 30.17 3.69
4524 5007 9.930693 CAAGACTTGTTCTAAATAGTACTTCCT 57.069 33.333 0.00 0.00 32.51 3.36
4525 5008 9.708092 ACAAGACTTGTTCTAAATAGTACTTCC 57.292 33.333 15.23 0.00 42.22 3.46
4738 5463 6.475504 TGATAAAGAATGCAGAGAAGGAACA 58.524 36.000 0.00 0.00 0.00 3.18
4750 5475 3.999663 CGAGATCCCCTGATAAAGAATGC 59.000 47.826 0.00 0.00 0.00 3.56
4751 5476 5.233988 GTCGAGATCCCCTGATAAAGAATG 58.766 45.833 0.00 0.00 0.00 2.67
4772 5497 3.990092 TGCGACCACATAATCATAGGTC 58.010 45.455 0.00 0.00 44.05 3.85
4984 5709 8.125978 TCCAGCTGAGTCATGATTAAATTTTT 57.874 30.769 17.39 0.00 0.00 1.94
4988 5713 7.707624 TTTTCCAGCTGAGTCATGATTAAAT 57.292 32.000 17.39 0.00 0.00 1.40
5039 5779 8.851416 CACAACTAAATTCAGTAGAGTCTTACG 58.149 37.037 0.00 0.00 0.00 3.18
5046 5786 7.658179 TTCAGCACAACTAAATTCAGTAGAG 57.342 36.000 0.00 0.00 0.00 2.43
5047 5787 7.715249 AGTTTCAGCACAACTAAATTCAGTAGA 59.285 33.333 0.00 0.00 32.48 2.59
5127 5867 1.680860 CCAGCAGCATCAGGATCAACA 60.681 52.381 0.00 0.00 0.00 3.33
5268 6008 0.035458 GGGCATCTATTGGTCGGAGG 59.965 60.000 0.00 0.00 0.00 4.30
5394 6134 6.719370 GTGGATATGAGTTCTGTAGAGGAGAT 59.281 42.308 0.00 0.00 0.00 2.75
5491 6231 1.676967 GAGGGGCAAGCTTGTGGAG 60.677 63.158 26.55 2.13 0.00 3.86
5589 6329 3.425404 GTTGTTGCTTATATGTGTGGCG 58.575 45.455 0.00 0.00 0.00 5.69
5802 6565 1.723608 TTGTGTTCGCAGGTGCAAGG 61.724 55.000 2.33 0.00 42.21 3.61
5865 6628 7.201938 CCAAAGAATATTGATTGGCCTGTGTAT 60.202 37.037 3.32 0.00 36.25 2.29
5994 6760 1.735376 GAGCCTTCTCGCCACGGATA 61.735 60.000 0.00 0.00 0.00 2.59
6442 12207 2.485814 GAGACTTGCAATGAACACTCCC 59.514 50.000 0.00 0.00 0.00 4.30
6532 12297 2.287915 CCCTCGACATGGAAATAAAGCG 59.712 50.000 0.00 0.00 0.00 4.68
6542 12307 3.544684 TCAATTCATTCCCTCGACATGG 58.455 45.455 0.00 0.00 0.00 3.66
6548 12317 4.002982 TCTGTGTTCAATTCATTCCCTCG 58.997 43.478 0.00 0.00 0.00 4.63
6562 12332 3.937706 AGCAAGCAGTATCATCTGTGTTC 59.062 43.478 0.00 0.00 37.70 3.18
6566 12336 2.286872 GCAGCAAGCAGTATCATCTGT 58.713 47.619 0.00 0.00 44.79 3.41
6674 12444 6.851330 CACTAATAAGCCGCAGTTTAATTAGC 59.149 38.462 0.00 0.00 0.00 3.09
6688 12458 6.835819 AACCCTTTTTCTCACTAATAAGCC 57.164 37.500 0.00 0.00 0.00 4.35
6690 12460 8.637196 AGGAAACCCTTTTTCTCACTAATAAG 57.363 34.615 0.00 0.00 0.00 1.73
6691 12461 7.668469 GGAGGAAACCCTTTTTCTCACTAATAA 59.332 37.037 7.55 0.00 46.01 1.40
6692 12462 7.173032 GGAGGAAACCCTTTTTCTCACTAATA 58.827 38.462 7.55 0.00 46.01 0.98
6693 12463 6.010850 GGAGGAAACCCTTTTTCTCACTAAT 58.989 40.000 7.55 0.00 46.01 1.73
6695 12465 4.202535 GGGAGGAAACCCTTTTTCTCACTA 60.203 45.833 7.55 0.00 44.70 2.74
6697 12467 2.891580 GGGAGGAAACCCTTTTTCTCAC 59.108 50.000 7.55 0.46 46.01 3.51
6698 12468 2.488347 CGGGAGGAAACCCTTTTTCTCA 60.488 50.000 7.55 0.00 46.01 3.27
6699 12469 2.160205 CGGGAGGAAACCCTTTTTCTC 58.840 52.381 0.00 0.00 44.16 2.87
6766 12640 1.921982 TTGGGCTTTTCTATGCTGCA 58.078 45.000 4.13 4.13 0.00 4.41
6773 12916 7.616313 TCTTGTTTTTCTTTTGGGCTTTTCTA 58.384 30.769 0.00 0.00 0.00 2.10
6868 13125 2.056577 CGTGGTGGTACTTCTTCGAAC 58.943 52.381 0.00 0.00 0.00 3.95
6870 13127 0.038892 GCGTGGTGGTACTTCTTCGA 60.039 55.000 0.00 0.00 0.00 3.71
6910 13167 3.376078 GGTGGCACATGCTGGTGG 61.376 66.667 20.82 0.00 44.52 4.61
6912 13169 2.598394 GTGGTGGCACATGCTGGT 60.598 61.111 20.82 0.00 44.52 4.00
6914 13171 3.740397 CCGTGGTGGCACATGCTG 61.740 66.667 20.82 3.87 44.52 4.41
6915 13172 2.404566 TAACCGTGGTGGCACATGCT 62.405 55.000 20.82 0.78 44.52 3.79
6916 13173 1.969064 TAACCGTGGTGGCACATGC 60.969 57.895 20.82 7.57 44.52 4.06
6917 13174 1.582610 GGTAACCGTGGTGGCACATG 61.583 60.000 20.82 10.66 44.52 3.21
6919 13176 2.111460 GGTAACCGTGGTGGCACA 59.889 61.111 20.82 2.61 43.94 4.57
6920 13177 3.045492 CGGTAACCGTGGTGGCAC 61.045 66.667 9.70 9.70 42.73 5.01
6928 13545 3.698820 GGCTGGTCCGGTAACCGT 61.699 66.667 0.00 0.00 46.80 4.83
6930 13547 2.046604 GTGGCTGGTCCGGTAACC 60.047 66.667 0.00 2.69 39.94 2.85
7061 14076 0.964358 CTCCCACCGGTCGAGTAGTT 60.964 60.000 16.87 0.00 0.00 2.24
7194 14209 0.303796 GCACTAATAAGCCGCGGTTC 59.696 55.000 28.70 11.34 0.00 3.62
7240 14255 4.725790 ATTCTGCAACATCCTTTAAGCC 57.274 40.909 0.00 0.00 0.00 4.35
7243 14258 4.466015 GGGGAATTCTGCAACATCCTTTAA 59.534 41.667 5.23 0.00 0.00 1.52
7245 14260 2.833943 GGGGAATTCTGCAACATCCTTT 59.166 45.455 5.23 0.00 0.00 3.11
7270 14825 9.840427 CATGTTCAAATAGGTAGTTTACAAAGG 57.160 33.333 0.00 0.00 0.00 3.11
7317 15070 8.728088 ATGCAATGAAACTAAGTTTAACTTCG 57.272 30.769 14.03 10.53 39.51 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.