Multiple sequence alignment - TraesCS5A01G364400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G364400 chr5A 100.000 5776 0 0 1 5776 564599524 564605299 0.000000e+00 10667.0
1 TraesCS5A01G364400 chr5A 89.924 1707 98 25 4100 5776 564664604 564666266 0.000000e+00 2132.0
2 TraesCS5A01G364400 chr5D 91.539 2281 111 27 1 2219 446758388 446760648 0.000000e+00 3068.0
3 TraesCS5A01G364400 chr5D 95.575 1401 38 12 4381 5776 446762699 446764080 0.000000e+00 2222.0
4 TraesCS5A01G364400 chr5D 93.791 1079 50 9 2947 4012 446761127 446762201 0.000000e+00 1605.0
5 TraesCS5A01G364400 chr5D 96.466 283 10 0 4106 4388 446762201 446762483 8.760000e-128 468.0
6 TraesCS5A01G364400 chr5D 90.141 284 21 3 2474 2757 446760644 446760920 4.250000e-96 363.0
7 TraesCS5A01G364400 chr5D 96.842 95 3 0 2851 2945 446760981 446761075 5.990000e-35 159.0
8 TraesCS5A01G364400 chr5B 93.787 1706 70 17 535 2220 544909292 544910981 0.000000e+00 2531.0
9 TraesCS5A01G364400 chr5B 91.795 1682 64 17 4100 5771 544912544 544914161 0.000000e+00 2274.0
10 TraesCS5A01G364400 chr5B 93.376 1087 53 11 2947 4018 544911464 544912546 0.000000e+00 1591.0
11 TraesCS5A01G364400 chr5B 92.289 817 36 12 4284 5100 544985109 544985898 0.000000e+00 1134.0
12 TraesCS5A01G364400 chr5B 88.836 627 49 16 5165 5776 544989334 544989954 0.000000e+00 750.0
13 TraesCS5A01G364400 chr5B 95.076 264 13 0 2218 2481 273258509 273258246 3.220000e-112 416.0
14 TraesCS5A01G364400 chr5B 96.875 96 3 0 4010 4105 330847845 330847750 1.670000e-35 161.0
15 TraesCS5A01G364400 chr5B 93.548 93 6 0 2853 2945 544911324 544911416 7.800000e-29 139.0
16 TraesCS5A01G364400 chr5B 100.000 34 0 0 5095 5128 544989286 544989319 4.830000e-06 63.9
17 TraesCS5A01G364400 chr4A 99.248 266 1 1 2218 2483 374622292 374622556 4.050000e-131 479.0
18 TraesCS5A01G364400 chr4A 94.444 270 15 0 2213 2482 722895472 722895741 3.220000e-112 416.0
19 TraesCS5A01G364400 chr4A 94.737 76 4 0 2777 2852 90592985 90592910 1.020000e-22 119.0
20 TraesCS5A01G364400 chr7D 95.539 269 11 1 2213 2481 78042678 78042411 4.140000e-116 429.0
21 TraesCS5A01G364400 chr7D 94.424 269 15 0 2211 2479 205549974 205550242 1.160000e-111 414.0
22 TraesCS5A01G364400 chrUn 96.169 261 10 0 2218 2478 24269871 24270131 1.490000e-115 427.0
23 TraesCS5A01G364400 chrUn 86.861 137 9 9 3995 4128 339555167 339555037 1.680000e-30 145.0
24 TraesCS5A01G364400 chrUn 92.857 70 5 0 164 233 377157994 377157925 1.020000e-17 102.0
25 TraesCS5A01G364400 chr2D 96.169 261 10 0 2218 2478 647763100 647763360 1.490000e-115 427.0
26 TraesCS5A01G364400 chr2D 94.737 76 3 1 2776 2851 467971428 467971354 3.660000e-22 117.0
27 TraesCS5A01G364400 chr6D 95.802 262 10 1 2218 2478 141141496 141141757 6.920000e-114 422.0
28 TraesCS5A01G364400 chr6D 93.907 279 14 3 2214 2490 203349391 203349114 8.950000e-113 418.0
29 TraesCS5A01G364400 chr6D 92.857 70 5 0 164 233 40663052 40663121 1.020000e-17 102.0
30 TraesCS5A01G364400 chr6D 92.857 70 5 0 164 233 468741227 468741296 1.020000e-17 102.0
31 TraesCS5A01G364400 chr2A 92.920 113 5 3 4013 4124 659614679 659614569 1.670000e-35 161.0
32 TraesCS5A01G364400 chr2A 94.937 79 3 1 2773 2851 608647270 608647347 7.860000e-24 122.0
33 TraesCS5A01G364400 chr2A 93.902 82 3 2 2770 2851 608647364 608647285 7.860000e-24 122.0
34 TraesCS5A01G364400 chr3A 93.458 107 5 2 4001 4105 602764875 602764769 2.150000e-34 158.0
35 TraesCS5A01G364400 chr7B 94.118 102 4 1 4013 4114 534830236 534830137 2.790000e-33 154.0
36 TraesCS5A01G364400 chr7B 92.523 107 6 2 4001 4105 177360635 177360529 1.000000e-32 152.0
37 TraesCS5A01G364400 chr7B 94.059 101 5 1 4003 4102 456359410 456359510 1.000000e-32 152.0
38 TraesCS5A01G364400 chr3B 96.774 93 2 1 4013 4104 652291746 652291838 2.790000e-33 154.0
39 TraesCS5A01G364400 chr1A 93.000 100 5 2 4017 4114 61846104 61846005 1.680000e-30 145.0
40 TraesCS5A01G364400 chr1A 97.297 74 2 0 2778 2851 304031972 304031899 6.080000e-25 126.0
41 TraesCS5A01G364400 chr1A 94.805 77 4 0 2775 2851 304031885 304031961 2.830000e-23 121.0
42 TraesCS5A01G364400 chr6B 98.630 73 1 0 2778 2850 560192913 560192841 4.700000e-26 130.0
43 TraesCS5A01G364400 chr6B 97.260 73 2 0 2778 2850 540593287 540593359 2.190000e-24 124.0
44 TraesCS5A01G364400 chr2B 93.671 79 4 1 2773 2851 546987483 546987560 3.660000e-22 117.0
45 TraesCS5A01G364400 chr3D 92.857 70 5 0 164 233 24924251 24924182 1.020000e-17 102.0
46 TraesCS5A01G364400 chr3D 92.857 70 5 0 164 233 525208535 525208604 1.020000e-17 102.0
47 TraesCS5A01G364400 chr1D 92.857 70 5 0 164 233 187584878 187584809 1.020000e-17 102.0
48 TraesCS5A01G364400 chr1D 92.857 70 5 0 164 233 392821833 392821902 1.020000e-17 102.0
49 TraesCS5A01G364400 chr1D 92.857 70 5 0 164 233 470413287 470413218 1.020000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G364400 chr5A 564599524 564605299 5775 False 10667.000000 10667 100.000000 1 5776 1 chr5A.!!$F1 5775
1 TraesCS5A01G364400 chr5A 564664604 564666266 1662 False 2132.000000 2132 89.924000 4100 5776 1 chr5A.!!$F2 1676
2 TraesCS5A01G364400 chr5D 446758388 446764080 5692 False 1314.166667 3068 94.059000 1 5776 6 chr5D.!!$F1 5775
3 TraesCS5A01G364400 chr5B 544909292 544914161 4869 False 1633.750000 2531 93.126500 535 5771 4 chr5B.!!$F1 5236
4 TraesCS5A01G364400 chr5B 544985109 544989954 4845 False 649.300000 1134 93.708333 4284 5776 3 chr5B.!!$F2 1492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 386 0.179045 ACCTTGTCTCAGCACACACC 60.179 55.000 0.00 0.0 0.00 4.16 F
1519 1574 1.001641 GGCACTCCCACATTGCTCT 60.002 57.895 0.00 0.0 36.46 4.09 F
2098 2167 0.250338 GTTCCTTCCAAGGTGAGCGT 60.250 55.000 5.24 0.0 46.54 5.07 F
2818 2930 0.109723 AAGACGCTGGGGCAGTTTAA 59.890 50.000 0.00 0.0 38.60 1.52 F
2819 2931 0.109723 AGACGCTGGGGCAGTTTAAA 59.890 50.000 0.00 0.0 38.60 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2090 0.251742 CAAGCCCCAACCTTCCATCA 60.252 55.000 0.00 0.00 0.00 3.07 R
2799 2911 0.109723 TTAAACTGCCCCAGCGTCTT 59.890 50.000 0.00 0.00 44.31 3.01 R
3494 3667 1.200716 CTTGTATGCTGCACCAACCAG 59.799 52.381 3.57 1.51 0.00 4.00 R
4680 5089 0.548031 GGGCTTGGATCCTCATCACA 59.452 55.000 14.23 0.00 0.00 3.58 R
4875 5284 1.804748 GTTTTCGCCAACTGAGTAGGG 59.195 52.381 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 7.944000 TGCAGCCTTTATGATAATTATCTGGAA 59.056 33.333 22.77 12.84 33.88 3.53
48 50 8.457261 CAGCCTTTATGATAATTATCTGGAAGC 58.543 37.037 22.77 17.77 33.88 3.86
67 75 1.340889 GCTCTTCATGCCAACCAAACA 59.659 47.619 0.00 0.00 0.00 2.83
79 87 1.039856 ACCAAACATGGCTGGAACAC 58.960 50.000 19.20 0.00 36.49 3.32
95 105 5.657474 TGGAACACAGAGTATAACGGATTC 58.343 41.667 0.00 0.00 0.00 2.52
98 108 6.405508 GGAACACAGAGTATAACGGATTCAGA 60.406 42.308 0.00 0.00 0.00 3.27
99 109 6.716934 ACACAGAGTATAACGGATTCAGAT 57.283 37.500 0.00 0.00 0.00 2.90
100 110 7.818997 ACACAGAGTATAACGGATTCAGATA 57.181 36.000 0.00 0.00 0.00 1.98
105 115 9.066939 CAGAGTATAACGGATTCAGATAATTCG 57.933 37.037 0.00 0.00 34.90 3.34
160 170 7.414814 AAAAACTAACAACACCACAAGTTTG 57.585 32.000 0.00 0.00 37.27 2.93
183 199 4.024387 GCGAAACTGTCAAACTGGAACATA 60.024 41.667 0.00 0.00 38.20 2.29
221 237 1.066071 GGGCACTAGAGGTTCTGGTTC 60.066 57.143 0.00 0.00 35.96 3.62
233 249 2.660189 TCTGGTTCGGACGGTAAATC 57.340 50.000 0.00 0.00 0.00 2.17
258 275 2.484264 ACTCAAAATGCCTACGTTGCTC 59.516 45.455 10.56 0.00 0.00 4.26
273 290 4.483476 GTTGCTCACAACGGACTAAATT 57.517 40.909 0.00 0.00 46.20 1.82
274 291 4.219033 GTTGCTCACAACGGACTAAATTG 58.781 43.478 0.00 0.00 46.20 2.32
275 292 3.472652 TGCTCACAACGGACTAAATTGT 58.527 40.909 0.00 0.00 37.02 2.71
282 299 4.885325 ACAACGGACTAAATTGTGACCTTT 59.115 37.500 0.00 0.00 35.28 3.11
283 300 5.008316 ACAACGGACTAAATTGTGACCTTTC 59.992 40.000 0.00 0.00 35.28 2.62
284 301 4.969484 ACGGACTAAATTGTGACCTTTCT 58.031 39.130 0.00 0.00 0.00 2.52
285 302 4.755123 ACGGACTAAATTGTGACCTTTCTG 59.245 41.667 0.00 0.00 0.00 3.02
290 307 8.451748 GGACTAAATTGTGACCTTTCTGATAAC 58.548 37.037 0.00 0.00 0.00 1.89
294 311 8.463930 AAATTGTGACCTTTCTGATAACTTCA 57.536 30.769 0.00 0.00 0.00 3.02
341 372 2.821969 CTGTTCCAAGATCCCAACCTTG 59.178 50.000 0.00 0.00 39.43 3.61
355 386 0.179045 ACCTTGTCTCAGCACACACC 60.179 55.000 0.00 0.00 0.00 4.16
401 432 5.489249 CTGGCTAGGATCTACGTACATCTA 58.511 45.833 10.18 1.87 0.00 1.98
463 499 4.798263 GCCCCAGCATAATCAATCATGTTG 60.798 45.833 0.00 0.00 39.53 3.33
495 531 6.870439 CCCAAGATCCATTTTGTTTTCTCTTC 59.130 38.462 0.00 0.00 0.00 2.87
503 539 8.522830 TCCATTTTGTTTTCTCTTCATATGGTC 58.477 33.333 2.13 0.00 0.00 4.02
504 540 8.306038 CCATTTTGTTTTCTCTTCATATGGTCA 58.694 33.333 2.13 0.00 0.00 4.02
541 579 1.219393 GAGAACCGGCTGGAAGGAG 59.781 63.158 21.41 0.00 39.21 3.69
549 590 2.069430 GCTGGAAGGAGGGAGAGGG 61.069 68.421 0.00 0.00 0.00 4.30
943 991 3.949113 AGCTTCTGTGCTCCTACTACTAC 59.051 47.826 0.00 0.00 39.34 2.73
944 992 3.949113 GCTTCTGTGCTCCTACTACTACT 59.051 47.826 0.00 0.00 0.00 2.57
945 993 5.104444 AGCTTCTGTGCTCCTACTACTACTA 60.104 44.000 0.00 0.00 39.34 1.82
963 1011 2.306219 ACTAGTTGCTTCCTTCCTTCCC 59.694 50.000 0.00 0.00 0.00 3.97
1519 1574 1.001641 GGCACTCCCACATTGCTCT 60.002 57.895 0.00 0.00 36.46 4.09
1720 1777 1.532868 CTGTTGCCGAGGAAAGTGAAG 59.467 52.381 0.00 0.00 0.00 3.02
1759 1816 2.126734 GTGCACATTGCCACGAGC 60.127 61.111 13.17 0.00 44.23 5.03
1805 1862 6.912591 CACAGAATCAGGTTGTTTGTAACTTC 59.087 38.462 0.00 0.00 0.00 3.01
1813 1870 7.776030 TCAGGTTGTTTGTAACTTCTTATCCAA 59.224 33.333 0.00 0.00 0.00 3.53
1817 1874 7.435068 TGTTTGTAACTTCTTATCCAAGCTC 57.565 36.000 0.00 0.00 0.00 4.09
1821 1878 9.733556 TTTGTAACTTCTTATCCAAGCTCAATA 57.266 29.630 0.00 0.00 0.00 1.90
1834 1891 7.847096 TCCAAGCTCAATACAGAAATACACTA 58.153 34.615 0.00 0.00 0.00 2.74
1892 1955 9.554395 TGAATAGTATGAGAAAGTGAACACAAA 57.446 29.630 7.68 0.00 0.00 2.83
1940 2003 6.357579 TGTTGAAATATTGGCCTTGTGATT 57.642 33.333 3.32 0.00 0.00 2.57
1941 2004 6.164876 TGTTGAAATATTGGCCTTGTGATTG 58.835 36.000 3.32 0.00 0.00 2.67
1953 2022 3.371168 CTTGTGATTGTCAAAACACCCG 58.629 45.455 17.53 9.11 38.07 5.28
1994 2063 1.145803 GACGGCTTGTAACAGGTGAC 58.854 55.000 0.00 0.00 0.00 3.67
2021 2090 0.324943 CTTGGGGTCGTGATGAAGGT 59.675 55.000 0.00 0.00 0.00 3.50
2033 2102 3.441572 GTGATGAAGGTGATGGAAGGTTG 59.558 47.826 0.00 0.00 0.00 3.77
2042 2111 1.442886 ATGGAAGGTTGGGGCTTGGA 61.443 55.000 0.00 0.00 0.00 3.53
2066 2135 2.529744 GGGTGGTCCAGGTGAAGCT 61.530 63.158 0.00 0.00 35.00 3.74
2098 2167 0.250338 GTTCCTTCCAAGGTGAGCGT 60.250 55.000 5.24 0.00 46.54 5.07
2230 2299 9.822185 TTAATTTATTAACTACTCCCTCCGTTC 57.178 33.333 0.00 0.00 0.00 3.95
2231 2300 5.859205 TTATTAACTACTCCCTCCGTTCC 57.141 43.478 0.00 0.00 0.00 3.62
2232 2301 1.755179 TAACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
2233 2302 0.251519 AACTACTCCCTCCGTTCCGT 60.252 55.000 0.00 0.00 0.00 4.69
2234 2303 0.620556 ACTACTCCCTCCGTTCCGTA 59.379 55.000 0.00 0.00 0.00 4.02
2235 2304 1.004745 ACTACTCCCTCCGTTCCGTAA 59.995 52.381 0.00 0.00 0.00 3.18
2236 2305 2.305009 CTACTCCCTCCGTTCCGTAAT 58.695 52.381 0.00 0.00 0.00 1.89
2237 2306 0.822164 ACTCCCTCCGTTCCGTAATG 59.178 55.000 0.00 0.00 0.00 1.90
2238 2307 0.822164 CTCCCTCCGTTCCGTAATGT 59.178 55.000 0.00 0.00 0.00 2.71
2239 2308 2.026641 CTCCCTCCGTTCCGTAATGTA 58.973 52.381 0.00 0.00 0.00 2.29
2241 2310 1.753073 CCCTCCGTTCCGTAATGTAGT 59.247 52.381 0.00 0.00 0.00 2.73
2242 2311 2.480759 CCCTCCGTTCCGTAATGTAGTG 60.481 54.545 0.00 0.00 0.00 2.74
2243 2312 2.190981 CTCCGTTCCGTAATGTAGTGC 58.809 52.381 0.00 0.00 0.00 4.40
2244 2313 1.135024 TCCGTTCCGTAATGTAGTGCC 60.135 52.381 0.00 0.00 0.00 5.01
2247 2316 3.243636 CCGTTCCGTAATGTAGTGCCTAT 60.244 47.826 0.00 0.00 0.00 2.57
2248 2317 4.022935 CCGTTCCGTAATGTAGTGCCTATA 60.023 45.833 0.00 0.00 0.00 1.31
2249 2318 5.152097 CGTTCCGTAATGTAGTGCCTATAG 58.848 45.833 0.00 0.00 0.00 1.31
2250 2319 5.049198 CGTTCCGTAATGTAGTGCCTATAGA 60.049 44.000 0.00 0.00 0.00 1.98
2251 2320 6.349115 CGTTCCGTAATGTAGTGCCTATAGAT 60.349 42.308 0.00 0.00 0.00 1.98
2252 2321 7.376615 GTTCCGTAATGTAGTGCCTATAGATT 58.623 38.462 0.00 0.00 0.00 2.40
2253 2322 7.534723 TCCGTAATGTAGTGCCTATAGATTT 57.465 36.000 0.00 0.00 0.00 2.17
2254 2323 7.959175 TCCGTAATGTAGTGCCTATAGATTTT 58.041 34.615 0.00 0.00 0.00 1.82
2255 2324 8.086522 TCCGTAATGTAGTGCCTATAGATTTTC 58.913 37.037 0.00 0.00 0.00 2.29
2256 2325 8.088981 CCGTAATGTAGTGCCTATAGATTTTCT 58.911 37.037 0.00 0.00 0.00 2.52
2257 2326 8.916654 CGTAATGTAGTGCCTATAGATTTTCTG 58.083 37.037 0.00 0.00 0.00 3.02
2258 2327 9.982651 GTAATGTAGTGCCTATAGATTTTCTGA 57.017 33.333 0.00 0.00 0.00 3.27
2260 2329 9.905713 AATGTAGTGCCTATAGATTTTCTGAAA 57.094 29.630 0.00 0.00 0.00 2.69
2261 2330 9.905713 ATGTAGTGCCTATAGATTTTCTGAAAA 57.094 29.630 17.04 17.04 34.41 2.29
2262 2331 9.383519 TGTAGTGCCTATAGATTTTCTGAAAAG 57.616 33.333 19.14 6.10 33.22 2.27
2263 2332 9.384764 GTAGTGCCTATAGATTTTCTGAAAAGT 57.615 33.333 19.14 12.14 33.22 2.66
2264 2333 8.499403 AGTGCCTATAGATTTTCTGAAAAGTC 57.501 34.615 19.14 15.59 33.22 3.01
2265 2334 8.103305 AGTGCCTATAGATTTTCTGAAAAGTCA 58.897 33.333 19.14 8.21 34.49 3.41
2266 2335 8.730680 GTGCCTATAGATTTTCTGAAAAGTCAA 58.269 33.333 19.14 6.98 34.49 3.18
2267 2336 9.295825 TGCCTATAGATTTTCTGAAAAGTCAAA 57.704 29.630 19.14 10.35 34.49 2.69
2268 2337 9.561270 GCCTATAGATTTTCTGAAAAGTCAAAC 57.439 33.333 19.14 7.81 34.49 2.93
2273 2342 8.189709 AGATTTTCTGAAAAGTCAAACTTTGC 57.810 30.769 19.14 4.89 46.78 3.68
2281 2350 7.765228 GAAAAGTCAAACTTTGCAAACTTTG 57.235 32.000 25.88 25.88 46.78 2.77
2282 2351 7.489574 AAAAGTCAAACTTTGCAAACTTTGA 57.510 28.000 28.34 28.34 46.78 2.69
2283 2352 6.466308 AAGTCAAACTTTGCAAACTTTGAC 57.534 33.333 37.83 37.83 43.81 3.18
2284 2353 4.929211 AGTCAAACTTTGCAAACTTTGACC 59.071 37.500 39.05 30.33 44.13 4.02
2285 2354 4.688413 GTCAAACTTTGCAAACTTTGACCA 59.312 37.500 36.59 21.78 41.10 4.02
2286 2355 5.178438 GTCAAACTTTGCAAACTTTGACCAA 59.822 36.000 36.59 21.55 41.10 3.67
2287 2356 5.407995 TCAAACTTTGCAAACTTTGACCAAG 59.592 36.000 28.34 12.42 38.64 3.61
2300 2369 7.696992 ACTTTGACCAAGTTTGTAGAGAAAA 57.303 32.000 0.00 0.00 43.89 2.29
2301 2370 8.117813 ACTTTGACCAAGTTTGTAGAGAAAAA 57.882 30.769 0.00 0.00 43.89 1.94
2302 2371 8.749354 ACTTTGACCAAGTTTGTAGAGAAAAAT 58.251 29.630 0.00 0.00 43.89 1.82
2414 2483 9.883142 AAATATTTTTCTTCACAAACTTGGTCA 57.117 25.926 0.00 0.00 0.00 4.02
2415 2484 9.883142 AATATTTTTCTTCACAAACTTGGTCAA 57.117 25.926 0.00 0.00 0.00 3.18
2416 2485 9.883142 ATATTTTTCTTCACAAACTTGGTCAAA 57.117 25.926 0.00 0.00 0.00 2.69
2417 2486 7.650834 TTTTTCTTCACAAACTTGGTCAAAG 57.349 32.000 0.00 0.00 42.07 2.77
2430 2499 6.817270 CTTGGTCAAAGTTTGTGAGATTTG 57.183 37.500 15.08 0.00 34.66 2.32
2431 2500 6.522625 TTGGTCAAAGTTTGTGAGATTTGA 57.477 33.333 15.08 0.00 38.85 2.69
2437 2506 8.687824 TCAAAGTTTGTGAGATTTGACTTTTC 57.312 30.769 15.08 0.00 36.89 2.29
2438 2507 8.303156 TCAAAGTTTGTGAGATTTGACTTTTCA 58.697 29.630 15.08 0.00 36.89 2.69
2439 2508 8.924691 CAAAGTTTGTGAGATTTGACTTTTCAA 58.075 29.630 7.48 0.00 40.14 2.69
2469 2538 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44
2470 2539 2.769663 AGGCACTACATTATGGAACGGA 59.230 45.455 0.00 0.00 36.02 4.69
2471 2540 3.131396 GGCACTACATTATGGAACGGAG 58.869 50.000 0.00 0.00 0.00 4.63
2472 2541 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
2473 2542 3.181469 GCACTACATTATGGAACGGAGGA 60.181 47.826 0.00 0.00 0.00 3.71
2474 2543 4.682320 GCACTACATTATGGAACGGAGGAA 60.682 45.833 0.00 0.00 0.00 3.36
2475 2544 5.050490 CACTACATTATGGAACGGAGGAAG 58.950 45.833 0.00 0.00 0.00 3.46
2476 2545 4.715297 ACTACATTATGGAACGGAGGAAGT 59.285 41.667 0.00 0.00 0.00 3.01
2477 2546 5.895534 ACTACATTATGGAACGGAGGAAGTA 59.104 40.000 0.00 0.00 0.00 2.24
2485 2554 4.529377 TGGAACGGAGGAAGTAGTAAACAT 59.471 41.667 0.00 0.00 0.00 2.71
2489 2558 7.414222 AACGGAGGAAGTAGTAAACATCATA 57.586 36.000 0.00 0.00 0.00 2.15
2538 2607 6.486993 GCTCTTCTTCAGAAACTAGGGAAAAA 59.513 38.462 0.00 0.00 33.07 1.94
2608 2677 9.608617 CAGTTCATATTAAGCTGCAATTATGAG 57.391 33.333 1.02 0.00 0.00 2.90
2616 2685 9.793252 ATTAAGCTGCAATTATGAGTTTACAAG 57.207 29.630 1.02 0.00 0.00 3.16
2621 2690 6.919721 TGCAATTATGAGTTTACAAGGTTCC 58.080 36.000 0.00 0.00 0.00 3.62
2645 2714 4.305769 GCTAATGTGAAATGTTGTGGCAA 58.694 39.130 0.00 0.00 0.00 4.52
2669 2738 5.891551 ACACAACATTTTTCCTCCAACTACT 59.108 36.000 0.00 0.00 0.00 2.57
2683 2752 3.222603 CAACTACTTGCCCAGACCTTTT 58.777 45.455 0.00 0.00 0.00 2.27
2710 2779 4.887071 TCATCCATTGGGCATAAGTTACAC 59.113 41.667 2.09 0.00 0.00 2.90
2711 2780 4.584638 TCCATTGGGCATAAGTTACACT 57.415 40.909 2.09 0.00 0.00 3.55
2712 2781 4.929479 TCCATTGGGCATAAGTTACACTT 58.071 39.130 2.09 0.00 41.97 3.16
2713 2782 6.068461 TCCATTGGGCATAAGTTACACTTA 57.932 37.500 2.09 0.00 43.95 2.24
2714 2783 6.119536 TCCATTGGGCATAAGTTACACTTAG 58.880 40.000 2.09 0.00 43.17 2.18
2715 2784 6.069905 TCCATTGGGCATAAGTTACACTTAGA 60.070 38.462 2.09 0.00 43.17 2.10
2735 2804 9.838339 ACTTAGATGGGTTATGATAGTTTTCTG 57.162 33.333 0.00 0.00 0.00 3.02
2782 2894 9.757227 AATCTCAATGATCTTGCTTAGTACTAC 57.243 33.333 0.91 0.00 33.57 2.73
2783 2895 7.717568 TCTCAATGATCTTGCTTAGTACTACC 58.282 38.462 0.91 0.00 0.00 3.18
2785 2897 7.717568 TCAATGATCTTGCTTAGTACTACCTC 58.282 38.462 0.91 0.00 0.00 3.85
2786 2898 6.658188 ATGATCTTGCTTAGTACTACCTCC 57.342 41.667 0.91 0.00 0.00 4.30
2787 2899 5.516044 TGATCTTGCTTAGTACTACCTCCA 58.484 41.667 0.91 0.00 0.00 3.86
2788 2900 6.136857 TGATCTTGCTTAGTACTACCTCCAT 58.863 40.000 0.91 0.00 0.00 3.41
2789 2901 6.611642 TGATCTTGCTTAGTACTACCTCCATT 59.388 38.462 0.91 0.00 0.00 3.16
2790 2902 6.466885 TCTTGCTTAGTACTACCTCCATTC 57.533 41.667 0.91 0.00 0.00 2.67
2791 2903 5.363005 TCTTGCTTAGTACTACCTCCATTCC 59.637 44.000 0.91 0.00 0.00 3.01
2792 2904 4.880164 TGCTTAGTACTACCTCCATTCCT 58.120 43.478 0.91 0.00 0.00 3.36
2793 2905 6.022107 TGCTTAGTACTACCTCCATTCCTA 57.978 41.667 0.91 0.00 0.00 2.94
2794 2906 6.437755 TGCTTAGTACTACCTCCATTCCTAA 58.562 40.000 0.91 0.00 0.00 2.69
2795 2907 6.899075 TGCTTAGTACTACCTCCATTCCTAAA 59.101 38.462 0.91 0.00 0.00 1.85
2796 2908 7.567622 TGCTTAGTACTACCTCCATTCCTAAAT 59.432 37.037 0.91 0.00 0.00 1.40
2797 2909 9.086758 GCTTAGTACTACCTCCATTCCTAAATA 57.913 37.037 0.91 0.00 0.00 1.40
2804 2916 8.804204 ACTACCTCCATTCCTAAATATAAGACG 58.196 37.037 0.00 0.00 0.00 4.18
2805 2917 6.465084 ACCTCCATTCCTAAATATAAGACGC 58.535 40.000 0.00 0.00 0.00 5.19
2806 2918 6.270231 ACCTCCATTCCTAAATATAAGACGCT 59.730 38.462 0.00 0.00 0.00 5.07
2807 2919 6.591834 CCTCCATTCCTAAATATAAGACGCTG 59.408 42.308 0.00 0.00 0.00 5.18
2808 2920 6.464222 TCCATTCCTAAATATAAGACGCTGG 58.536 40.000 0.00 0.00 0.00 4.85
2809 2921 5.643777 CCATTCCTAAATATAAGACGCTGGG 59.356 44.000 0.00 0.00 0.00 4.45
2810 2922 4.884668 TCCTAAATATAAGACGCTGGGG 57.115 45.455 0.00 0.00 0.00 4.96
2811 2923 3.007614 TCCTAAATATAAGACGCTGGGGC 59.992 47.826 0.00 0.00 0.00 5.80
2812 2924 3.244422 CCTAAATATAAGACGCTGGGGCA 60.244 47.826 0.00 0.00 38.60 5.36
2813 2925 2.550830 AATATAAGACGCTGGGGCAG 57.449 50.000 0.00 0.00 38.60 4.85
2814 2926 1.424638 ATATAAGACGCTGGGGCAGT 58.575 50.000 0.00 0.00 38.60 4.40
2815 2927 1.200519 TATAAGACGCTGGGGCAGTT 58.799 50.000 0.00 0.00 38.60 3.16
2816 2928 0.328258 ATAAGACGCTGGGGCAGTTT 59.672 50.000 0.00 0.00 38.60 2.66
2817 2929 0.978151 TAAGACGCTGGGGCAGTTTA 59.022 50.000 0.00 0.00 38.60 2.01
2818 2930 0.109723 AAGACGCTGGGGCAGTTTAA 59.890 50.000 0.00 0.00 38.60 1.52
2819 2931 0.109723 AGACGCTGGGGCAGTTTAAA 59.890 50.000 0.00 0.00 38.60 1.52
2820 2932 1.173913 GACGCTGGGGCAGTTTAAAT 58.826 50.000 0.00 0.00 38.60 1.40
2821 2933 1.544246 GACGCTGGGGCAGTTTAAATT 59.456 47.619 0.00 0.00 38.60 1.82
2822 2934 2.750712 GACGCTGGGGCAGTTTAAATTA 59.249 45.455 0.00 0.00 38.60 1.40
2823 2935 3.158676 ACGCTGGGGCAGTTTAAATTAA 58.841 40.909 0.00 0.00 38.60 1.40
2824 2936 3.574826 ACGCTGGGGCAGTTTAAATTAAA 59.425 39.130 0.00 0.00 38.60 1.52
2825 2937 3.924073 CGCTGGGGCAGTTTAAATTAAAC 59.076 43.478 18.07 18.07 46.36 2.01
2835 2947 5.832568 GTTTAAATTAAACTGCCCCAACG 57.167 39.130 18.36 0.00 43.50 4.10
2836 2948 5.291178 GTTTAAATTAAACTGCCCCAACGT 58.709 37.500 18.36 0.00 43.50 3.99
2837 2949 3.653539 AAATTAAACTGCCCCAACGTC 57.346 42.857 0.00 0.00 0.00 4.34
2838 2950 2.579410 ATTAAACTGCCCCAACGTCT 57.421 45.000 0.00 0.00 0.00 4.18
2839 2951 2.351706 TTAAACTGCCCCAACGTCTT 57.648 45.000 0.00 0.00 0.00 3.01
2840 2952 3.488778 TTAAACTGCCCCAACGTCTTA 57.511 42.857 0.00 0.00 0.00 2.10
2841 2953 2.579410 AAACTGCCCCAACGTCTTAT 57.421 45.000 0.00 0.00 0.00 1.73
2842 2954 3.706600 AAACTGCCCCAACGTCTTATA 57.293 42.857 0.00 0.00 0.00 0.98
2843 2955 3.926058 AACTGCCCCAACGTCTTATAT 57.074 42.857 0.00 0.00 0.00 0.86
2844 2956 3.926058 ACTGCCCCAACGTCTTATATT 57.074 42.857 0.00 0.00 0.00 1.28
2845 2957 4.230745 ACTGCCCCAACGTCTTATATTT 57.769 40.909 0.00 0.00 0.00 1.40
2846 2958 5.362105 ACTGCCCCAACGTCTTATATTTA 57.638 39.130 0.00 0.00 0.00 1.40
2847 2959 5.365619 ACTGCCCCAACGTCTTATATTTAG 58.634 41.667 0.00 0.00 0.00 1.85
2848 2960 4.710324 TGCCCCAACGTCTTATATTTAGG 58.290 43.478 0.00 0.00 0.00 2.69
2849 2961 4.409574 TGCCCCAACGTCTTATATTTAGGA 59.590 41.667 0.00 0.00 0.00 2.94
2850 2962 5.104444 TGCCCCAACGTCTTATATTTAGGAA 60.104 40.000 0.00 0.00 0.00 3.36
2851 2963 5.469084 GCCCCAACGTCTTATATTTAGGAAG 59.531 44.000 0.00 0.00 0.00 3.46
2852 2964 6.589135 CCCCAACGTCTTATATTTAGGAAGT 58.411 40.000 0.00 0.00 29.63 3.01
2853 2965 7.687592 GCCCCAACGTCTTATATTTAGGAAGTA 60.688 40.741 0.00 0.00 28.66 2.24
2854 2966 8.373220 CCCCAACGTCTTATATTTAGGAAGTAT 58.627 37.037 0.00 0.00 28.66 2.12
3152 3314 5.901552 TGTTGGAAATTCAGGTGTTTTCTC 58.098 37.500 0.00 0.00 31.57 2.87
3161 3323 8.697507 AATTCAGGTGTTTTCTCTGAACTAAT 57.302 30.769 7.08 0.00 46.17 1.73
3299 3461 7.284034 AGGAATATACATTTGCCTTTGTCTCAG 59.716 37.037 0.00 0.00 0.00 3.35
3305 3467 2.928801 TGCCTTTGTCTCAGCAAGTA 57.071 45.000 0.00 0.00 30.97 2.24
3315 3477 7.900782 TTGTCTCAGCAAGTAGGTTAATTAC 57.099 36.000 0.00 0.00 0.00 1.89
3317 3479 6.098017 GTCTCAGCAAGTAGGTTAATTACGT 58.902 40.000 0.00 0.00 0.00 3.57
3340 3502 2.879826 ACTGCTTGTTTTGACTGCAAC 58.120 42.857 0.00 0.00 32.79 4.17
3408 3570 4.081406 TGTTGGATCTTACAGCAAGCAAT 58.919 39.130 0.00 0.00 33.94 3.56
3412 3574 3.944015 GGATCTTACAGCAAGCAATCAGT 59.056 43.478 0.00 0.00 33.94 3.41
3413 3575 4.201891 GGATCTTACAGCAAGCAATCAGTG 60.202 45.833 0.00 0.00 33.94 3.66
3418 3580 2.224079 ACAGCAAGCAATCAGTGTAACG 59.776 45.455 0.00 0.00 45.86 3.18
3430 3592 2.968675 AGTGTAACGCCACTGTATTCC 58.031 47.619 2.55 0.00 43.86 3.01
3438 3600 4.726583 ACGCCACTGTATTCCTAGAGATA 58.273 43.478 0.00 0.00 0.00 1.98
3470 3643 4.286297 TGTATTACTTTCAGGCTGCTGT 57.714 40.909 10.34 10.49 0.00 4.40
3494 3667 3.904136 AGCAAGCACAGAACAATGTAC 57.096 42.857 0.00 0.00 0.00 2.90
3501 3674 3.304659 GCACAGAACAATGTACTGGTTGG 60.305 47.826 0.00 0.00 36.17 3.77
3617 3791 2.302733 AGGGCATCCAACCATTCAAAAC 59.697 45.455 0.00 0.00 34.83 2.43
3624 3798 6.567050 CATCCAACCATTCAAAACCATAGAG 58.433 40.000 0.00 0.00 0.00 2.43
3728 3902 5.360714 AGGTGAATGCTGTTTCTCTTTTTCA 59.639 36.000 0.00 0.00 0.00 2.69
3759 3933 5.882557 AGATAGTCATTCATGGTGGTTGTTC 59.117 40.000 0.00 0.00 0.00 3.18
3808 3982 6.023603 TCTTAGTCTCACCTACCTTCCATTT 58.976 40.000 0.00 0.00 0.00 2.32
3835 4010 8.274248 GCCATTTCTTTACTAGTAAATCGTAGC 58.726 37.037 24.61 18.98 34.86 3.58
3841 4016 8.464404 TCTTTACTAGTAAATCGTAGCACACAT 58.536 33.333 24.61 0.00 34.86 3.21
3847 4022 4.668576 AAATCGTAGCACACATTGTCTG 57.331 40.909 0.00 0.00 0.00 3.51
3870 4045 5.066893 TGTGCTGAAGATTCATAGGAAATGC 59.933 40.000 0.00 0.00 36.43 3.56
3875 4050 8.408601 GCTGAAGATTCATAGGAAATGCTAAAA 58.591 33.333 0.00 0.00 36.43 1.52
3905 4086 4.072131 ACCACCACATGACATTGAGTAAC 58.928 43.478 0.00 0.00 0.00 2.50
3952 4133 2.597455 ACCATTTGGGGAGTGAAAGTG 58.403 47.619 0.96 0.00 42.91 3.16
4018 4199 9.976511 TGTATAGTTTATAAGACTGGCATGTAC 57.023 33.333 0.00 0.00 0.00 2.90
4021 4202 6.583562 AGTTTATAAGACTGGCATGTACTCC 58.416 40.000 0.00 0.00 0.00 3.85
4022 4203 5.546621 TTATAAGACTGGCATGTACTCCC 57.453 43.478 0.00 0.00 0.00 4.30
4023 4204 1.958288 AAGACTGGCATGTACTCCCT 58.042 50.000 0.00 0.00 0.00 4.20
4024 4205 1.490574 AGACTGGCATGTACTCCCTC 58.509 55.000 0.00 0.00 0.00 4.30
4025 4206 0.466124 GACTGGCATGTACTCCCTCC 59.534 60.000 0.00 0.00 0.00 4.30
4026 4207 1.330655 ACTGGCATGTACTCCCTCCG 61.331 60.000 0.00 0.00 0.00 4.63
4027 4208 1.305802 TGGCATGTACTCCCTCCGT 60.306 57.895 0.00 0.00 0.00 4.69
4028 4209 0.907704 TGGCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
4029 4210 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
4030 4211 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
4031 4212 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
4032 4213 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
4033 4214 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
4034 4215 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
4035 4216 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
4036 4217 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
4037 4218 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4038 4219 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4039 4220 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4040 4221 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4041 4222 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4042 4223 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4043 4224 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4044 4225 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4045 4226 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4046 4227 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4047 4228 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4048 4229 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4049 4230 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4050 4231 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4051 4232 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4052 4233 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4053 4234 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
4054 4235 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
4055 4236 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
4056 4237 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4057 4238 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4058 4239 9.975218 AAATAGATGACCCAACTTTGTACTAAT 57.025 29.630 0.00 0.00 0.00 1.73
4059 4240 9.975218 AATAGATGACCCAACTTTGTACTAATT 57.025 29.630 0.00 0.00 0.00 1.40
4060 4241 9.975218 ATAGATGACCCAACTTTGTACTAATTT 57.025 29.630 0.00 0.00 0.00 1.82
4061 4242 8.706322 AGATGACCCAACTTTGTACTAATTTT 57.294 30.769 0.00 0.00 0.00 1.82
4062 4243 9.802039 AGATGACCCAACTTTGTACTAATTTTA 57.198 29.630 0.00 0.00 0.00 1.52
4064 4245 8.983702 TGACCCAACTTTGTACTAATTTTAGT 57.016 30.769 8.00 8.00 45.39 2.24
4088 4269 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
4089 4270 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
4090 4271 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
4091 4272 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4092 4273 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4093 4274 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4094 4275 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4095 4276 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4096 4277 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4097 4278 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4098 4279 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4165 4350 7.912250 GTCAGGCAGATAATCAGTATTTTGTTG 59.088 37.037 0.00 0.00 0.00 3.33
4182 4367 7.776933 TTTTGTTGCTGTTGTAATTATGCAA 57.223 28.000 0.00 0.00 37.96 4.08
4313 4498 7.899973 AGTAATGAAGAAGAAATGCCATTGTT 58.100 30.769 0.00 0.00 0.00 2.83
4317 4502 6.680810 TGAAGAAGAAATGCCATTGTTGTAG 58.319 36.000 0.00 0.00 0.00 2.74
4395 4803 6.369065 CACTGTAAGAGCCTCTTATTCGTTTT 59.631 38.462 16.78 0.00 40.64 2.43
4460 4869 8.135382 AGTTATGTTGCCTTCTTCTAGTTCTA 57.865 34.615 0.00 0.00 0.00 2.10
4461 4870 8.035984 AGTTATGTTGCCTTCTTCTAGTTCTAC 58.964 37.037 0.00 0.00 0.00 2.59
4462 4871 6.613153 ATGTTGCCTTCTTCTAGTTCTACT 57.387 37.500 0.00 0.00 0.00 2.57
4464 4873 6.921914 TGTTGCCTTCTTCTAGTTCTACTAC 58.078 40.000 0.00 0.00 0.00 2.73
4465 4874 6.720288 TGTTGCCTTCTTCTAGTTCTACTACT 59.280 38.462 0.00 0.00 0.00 2.57
4466 4875 7.232941 TGTTGCCTTCTTCTAGTTCTACTACTT 59.767 37.037 0.00 0.00 0.00 2.24
4467 4876 7.393841 TGCCTTCTTCTAGTTCTACTACTTC 57.606 40.000 0.00 0.00 0.00 3.01
4468 4877 7.176490 TGCCTTCTTCTAGTTCTACTACTTCT 58.824 38.462 0.00 0.00 0.00 2.85
4469 4878 7.121463 TGCCTTCTTCTAGTTCTACTACTTCTG 59.879 40.741 0.00 0.00 0.00 3.02
4470 4879 7.121611 GCCTTCTTCTAGTTCTACTACTTCTGT 59.878 40.741 0.00 0.00 0.00 3.41
4476 4885 9.790344 TTCTAGTTCTACTACTTCTGTACAAGT 57.210 33.333 5.57 5.57 39.94 3.16
4484 4893 9.291664 CTACTACTTCTGTACAAGTATTTCAGC 57.708 37.037 7.67 0.00 38.04 4.26
4592 5001 4.466370 CCAGAGAAAGGTGACCTGTACATA 59.534 45.833 4.15 0.00 32.13 2.29
4680 5089 9.736023 CTGTTAAAGTTAATTTTCTTGCTGACT 57.264 29.630 0.00 0.00 32.01 3.41
4917 5326 2.281484 GCTCGGTGAAGCCCAACA 60.281 61.111 0.00 0.00 36.22 3.33
5092 5501 9.606631 GATTCATAGATCCTTTTCTGTAGTTGT 57.393 33.333 0.00 0.00 0.00 3.32
5204 9010 0.832135 TTGCTTCCTCGGTCACTCCT 60.832 55.000 0.00 0.00 0.00 3.69
5220 9026 2.303311 ACTCCTCCTTTCAGTTACCTGC 59.697 50.000 0.00 0.00 38.66 4.85
5236 9042 7.438160 CAGTTACCTGCGATTATTCATGTCTTA 59.562 37.037 0.00 0.00 0.00 2.10
5295 9101 6.574350 TCGTTTTCCATGTGTAACCAAAATT 58.426 32.000 0.00 0.00 34.36 1.82
5340 9146 2.013563 GCTCGTTGATTCCATGGCTGA 61.014 52.381 6.96 0.00 0.00 4.26
5393 9204 6.457355 CATTTGTTGGGTGATCAAATCTTCA 58.543 36.000 0.00 0.00 38.96 3.02
5400 9211 4.761739 GGGTGATCAAATCTTCACACTTCA 59.238 41.667 0.00 0.00 41.92 3.02
5401 9212 5.335191 GGGTGATCAAATCTTCACACTTCAC 60.335 44.000 0.00 0.00 41.92 3.18
5480 9299 4.764823 CGAGAGATATATATCCCCCAGCTC 59.235 50.000 17.44 13.08 33.17 4.09
5536 9356 4.327680 AGAAACCACATAGTTCAAGCCTC 58.672 43.478 0.00 0.00 0.00 4.70
5611 9433 1.474879 GAGAAGTCCGGAGAGTCAAGG 59.525 57.143 3.06 0.00 0.00 3.61
5762 9603 7.727331 ATCTGAGCTGCTTTCTCAATTATAC 57.273 36.000 2.53 0.00 39.77 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 20 8.188799 CCAGATAATTATCATAAAGGCTGCATG 58.811 37.037 24.00 10.60 35.17 4.06
23 25 8.389366 AGCTTCCAGATAATTATCATAAAGGCT 58.611 33.333 24.00 20.29 35.17 4.58
32 34 7.148272 GGCATGAAGAGCTTCCAGATAATTATC 60.148 40.741 16.35 16.35 38.77 1.75
46 48 1.615392 GTTTGGTTGGCATGAAGAGCT 59.385 47.619 0.00 0.00 0.00 4.09
48 50 3.581755 CATGTTTGGTTGGCATGAAGAG 58.418 45.455 0.00 0.00 41.62 2.85
67 75 4.680708 CGTTATACTCTGTGTTCCAGCCAT 60.681 45.833 0.00 0.00 41.25 4.40
79 87 9.066939 CGAATTATCTGAATCCGTTATACTCTG 57.933 37.037 0.00 0.00 0.00 3.35
81 89 8.967552 ACGAATTATCTGAATCCGTTATACTC 57.032 34.615 0.00 0.00 0.00 2.59
84 92 7.972277 GCCTACGAATTATCTGAATCCGTTATA 59.028 37.037 0.00 0.00 0.00 0.98
85 93 6.812160 GCCTACGAATTATCTGAATCCGTTAT 59.188 38.462 0.00 0.00 0.00 1.89
88 96 4.038763 TGCCTACGAATTATCTGAATCCGT 59.961 41.667 0.00 0.00 0.00 4.69
89 97 4.556233 TGCCTACGAATTATCTGAATCCG 58.444 43.478 0.00 0.00 0.00 4.18
90 98 4.390297 GCTGCCTACGAATTATCTGAATCC 59.610 45.833 0.00 0.00 0.00 3.01
95 105 3.982475 TCTGCTGCCTACGAATTATCTG 58.018 45.455 0.00 0.00 0.00 2.90
98 108 4.408182 AACTCTGCTGCCTACGAATTAT 57.592 40.909 0.00 0.00 0.00 1.28
99 109 3.887621 AACTCTGCTGCCTACGAATTA 57.112 42.857 0.00 0.00 0.00 1.40
100 110 2.744202 CAAACTCTGCTGCCTACGAATT 59.256 45.455 0.00 0.00 0.00 2.17
136 146 6.073494 GCAAACTTGTGGTGTTGTTAGTTTTT 60.073 34.615 0.00 0.00 34.59 1.94
137 147 5.407084 GCAAACTTGTGGTGTTGTTAGTTTT 59.593 36.000 0.00 0.00 34.59 2.43
160 170 2.096819 TGTTCCAGTTTGACAGTTTCGC 59.903 45.455 0.00 0.00 0.00 4.70
183 199 5.070313 AGTGCCCACATCAATTTGTTAGTTT 59.930 36.000 0.82 0.00 0.00 2.66
221 237 1.475280 TGAGTCAGGATTTACCGTCCG 59.525 52.381 0.00 0.00 44.74 4.79
233 249 2.699954 ACGTAGGCATTTTGAGTCAGG 58.300 47.619 0.00 0.00 0.00 3.86
284 301 4.218417 GCCCTTTTTGCTCTGAAGTTATCA 59.782 41.667 0.00 0.00 36.38 2.15
285 302 4.460731 AGCCCTTTTTGCTCTGAAGTTATC 59.539 41.667 0.00 0.00 32.41 1.75
312 329 4.006319 GGGATCTTGGAACAGAAGAACAG 58.994 47.826 0.00 0.00 42.39 3.16
341 372 1.148273 TTGGGGTGTGTGCTGAGAC 59.852 57.895 0.00 0.00 0.00 3.36
355 386 2.572290 GATCCGAGTTATTGGGTTGGG 58.428 52.381 0.00 0.00 0.00 4.12
388 419 4.699735 TCCGTTGGTTTAGATGTACGTAGA 59.300 41.667 0.00 0.00 0.00 2.59
392 423 4.865925 TGATTCCGTTGGTTTAGATGTACG 59.134 41.667 0.00 0.00 0.00 3.67
401 432 2.890311 TGCTCATTGATTCCGTTGGTTT 59.110 40.909 0.00 0.00 0.00 3.27
463 499 2.671896 AATGGATCTTGGGAGGATGC 57.328 50.000 0.00 0.00 33.20 3.91
495 531 3.244911 GGATTACCCACCCTGACCATATG 60.245 52.174 0.00 0.00 34.14 1.78
499 535 2.704719 GGATTACCCACCCTGACCA 58.295 57.895 0.00 0.00 34.14 4.02
519 557 3.234630 TTCCAGCCGGTTCTCCACG 62.235 63.158 1.90 0.00 0.00 4.94
541 579 4.179599 CCTCCCCTCCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
619 660 2.732619 GGGCAACTCCTCCTACCGG 61.733 68.421 0.00 0.00 34.39 5.28
812 853 4.883354 GGAGGCATCTTGGGGGCG 62.883 72.222 0.00 0.00 34.32 6.13
943 991 2.573915 AGGGAAGGAAGGAAGCAACTAG 59.426 50.000 0.00 0.00 0.00 2.57
944 992 2.572104 GAGGGAAGGAAGGAAGCAACTA 59.428 50.000 0.00 0.00 0.00 2.24
945 993 1.352687 GAGGGAAGGAAGGAAGCAACT 59.647 52.381 0.00 0.00 0.00 3.16
1805 1862 9.330063 TGTATTTCTGTATTGAGCTTGGATAAG 57.670 33.333 0.00 0.00 36.97 1.73
1940 2003 0.736053 GAGTTGCGGGTGTTTTGACA 59.264 50.000 0.00 0.00 0.00 3.58
1941 2004 1.021968 AGAGTTGCGGGTGTTTTGAC 58.978 50.000 0.00 0.00 0.00 3.18
1953 2022 3.863142 AAATGCAAGGATCAGAGTTGC 57.137 42.857 12.08 12.08 45.56 4.17
1994 2063 2.104967 TCACGACCCCAAGTGTATAGG 58.895 52.381 0.00 0.00 39.25 2.57
2021 2090 0.251742 CAAGCCCCAACCTTCCATCA 60.252 55.000 0.00 0.00 0.00 3.07
2033 2102 4.382541 CCCCCACTTCCAAGCCCC 62.383 72.222 0.00 0.00 0.00 5.80
2042 2111 2.858974 CCTGGACCACCCCCACTT 60.859 66.667 0.00 0.00 34.81 3.16
2066 2135 1.620819 GAAGGAACACTGAGAGAGCCA 59.379 52.381 0.00 0.00 0.00 4.75
2239 2308 8.103305 TGACTTTTCAGAAAATCTATAGGCACT 58.897 33.333 8.81 0.00 46.37 4.40
2241 2310 8.862325 TTGACTTTTCAGAAAATCTATAGGCA 57.138 30.769 8.81 1.81 31.71 4.75
2242 2311 9.561270 GTTTGACTTTTCAGAAAATCTATAGGC 57.439 33.333 8.81 0.00 31.71 3.93
2247 2316 9.301153 GCAAAGTTTGACTTTTCAGAAAATCTA 57.699 29.630 19.82 4.13 45.38 1.98
2248 2317 7.818930 TGCAAAGTTTGACTTTTCAGAAAATCT 59.181 29.630 19.82 0.00 45.38 2.40
2249 2318 7.962917 TGCAAAGTTTGACTTTTCAGAAAATC 58.037 30.769 19.82 9.20 45.38 2.17
2250 2319 7.903995 TGCAAAGTTTGACTTTTCAGAAAAT 57.096 28.000 19.82 0.23 45.38 1.82
2251 2320 7.721286 TTGCAAAGTTTGACTTTTCAGAAAA 57.279 28.000 19.82 8.09 45.38 2.29
2252 2321 7.440856 AGTTTGCAAAGTTTGACTTTTCAGAAA 59.559 29.630 19.82 0.00 45.38 2.52
2253 2322 6.928492 AGTTTGCAAAGTTTGACTTTTCAGAA 59.072 30.769 19.82 2.24 45.38 3.02
2254 2323 6.454795 AGTTTGCAAAGTTTGACTTTTCAGA 58.545 32.000 19.82 0.00 45.38 3.27
2255 2324 6.710692 AGTTTGCAAAGTTTGACTTTTCAG 57.289 33.333 19.82 0.00 45.38 3.02
2256 2325 7.489574 AAAGTTTGCAAAGTTTGACTTTTCA 57.510 28.000 33.55 3.64 45.38 2.69
2265 2334 5.861222 CTTGGTCAAAGTTTGCAAAGTTT 57.139 34.783 30.47 30.47 41.01 2.66
2388 2457 9.883142 TGACCAAGTTTGTGAAGAAAAATATTT 57.117 25.926 0.00 0.00 0.00 1.40
2389 2458 9.883142 TTGACCAAGTTTGTGAAGAAAAATATT 57.117 25.926 0.00 0.00 0.00 1.28
2390 2459 9.883142 TTTGACCAAGTTTGTGAAGAAAAATAT 57.117 25.926 0.00 0.00 0.00 1.28
2391 2460 9.364989 CTTTGACCAAGTTTGTGAAGAAAAATA 57.635 29.630 0.00 0.00 0.00 1.40
2392 2461 7.877612 ACTTTGACCAAGTTTGTGAAGAAAAAT 59.122 29.630 6.75 0.00 43.89 1.82
2393 2462 7.213678 ACTTTGACCAAGTTTGTGAAGAAAAA 58.786 30.769 6.75 0.00 43.89 1.94
2394 2463 6.754193 ACTTTGACCAAGTTTGTGAAGAAAA 58.246 32.000 6.75 0.00 43.89 2.29
2395 2464 6.339587 ACTTTGACCAAGTTTGTGAAGAAA 57.660 33.333 6.75 0.00 43.89 2.52
2396 2465 5.975693 ACTTTGACCAAGTTTGTGAAGAA 57.024 34.783 6.75 0.00 43.89 2.52
2407 2476 6.473455 GTCAAATCTCACAAACTTTGACCAAG 59.527 38.462 8.55 0.96 45.88 3.61
2408 2477 6.329496 GTCAAATCTCACAAACTTTGACCAA 58.671 36.000 8.55 0.00 45.88 3.67
2409 2478 5.890334 GTCAAATCTCACAAACTTTGACCA 58.110 37.500 8.55 0.00 45.88 4.02
2412 2481 8.303156 TGAAAAGTCAAATCTCACAAACTTTGA 58.697 29.630 8.55 0.00 37.12 2.69
2413 2482 8.464770 TGAAAAGTCAAATCTCACAAACTTTG 57.535 30.769 0.00 0.00 37.12 2.77
2414 2483 9.487790 TTTGAAAAGTCAAATCTCACAAACTTT 57.512 25.926 0.00 0.00 46.48 2.66
2441 2510 9.726438 GTTCCATAATGTAGTGCCTATAGATTT 57.274 33.333 0.00 0.00 0.00 2.17
2442 2511 8.035394 CGTTCCATAATGTAGTGCCTATAGATT 58.965 37.037 0.00 0.00 0.00 2.40
2443 2512 7.363880 CCGTTCCATAATGTAGTGCCTATAGAT 60.364 40.741 0.00 0.00 0.00 1.98
2444 2513 6.071560 CCGTTCCATAATGTAGTGCCTATAGA 60.072 42.308 0.00 0.00 0.00 1.98
2445 2514 6.071560 TCCGTTCCATAATGTAGTGCCTATAG 60.072 42.308 0.00 0.00 0.00 1.31
2446 2515 5.776208 TCCGTTCCATAATGTAGTGCCTATA 59.224 40.000 0.00 0.00 0.00 1.31
2447 2516 4.591498 TCCGTTCCATAATGTAGTGCCTAT 59.409 41.667 0.00 0.00 0.00 2.57
2448 2517 3.962063 TCCGTTCCATAATGTAGTGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
2449 2518 2.769663 TCCGTTCCATAATGTAGTGCCT 59.230 45.455 0.00 0.00 0.00 4.75
2450 2519 3.131396 CTCCGTTCCATAATGTAGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
2451 2520 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
2452 2521 4.665833 TCCTCCGTTCCATAATGTAGTG 57.334 45.455 0.00 0.00 0.00 2.74
2453 2522 4.715297 ACTTCCTCCGTTCCATAATGTAGT 59.285 41.667 0.00 0.00 0.00 2.73
2454 2523 5.277857 ACTTCCTCCGTTCCATAATGTAG 57.722 43.478 0.00 0.00 0.00 2.74
2455 2524 5.895534 ACTACTTCCTCCGTTCCATAATGTA 59.104 40.000 0.00 0.00 0.00 2.29
2456 2525 4.715297 ACTACTTCCTCCGTTCCATAATGT 59.285 41.667 0.00 0.00 0.00 2.71
2457 2526 5.277857 ACTACTTCCTCCGTTCCATAATG 57.722 43.478 0.00 0.00 0.00 1.90
2458 2527 7.093201 TGTTTACTACTTCCTCCGTTCCATAAT 60.093 37.037 0.00 0.00 0.00 1.28
2459 2528 6.211184 TGTTTACTACTTCCTCCGTTCCATAA 59.789 38.462 0.00 0.00 0.00 1.90
2460 2529 5.716228 TGTTTACTACTTCCTCCGTTCCATA 59.284 40.000 0.00 0.00 0.00 2.74
2461 2530 4.529377 TGTTTACTACTTCCTCCGTTCCAT 59.471 41.667 0.00 0.00 0.00 3.41
2462 2531 3.896888 TGTTTACTACTTCCTCCGTTCCA 59.103 43.478 0.00 0.00 0.00 3.53
2463 2532 4.525912 TGTTTACTACTTCCTCCGTTCC 57.474 45.455 0.00 0.00 0.00 3.62
2464 2533 5.717119 TGATGTTTACTACTTCCTCCGTTC 58.283 41.667 0.00 0.00 31.60 3.95
2465 2534 5.733620 TGATGTTTACTACTTCCTCCGTT 57.266 39.130 0.00 0.00 31.60 4.44
2466 2535 5.934402 ATGATGTTTACTACTTCCTCCGT 57.066 39.130 0.00 0.00 31.60 4.69
2503 2572 6.538881 TTTCTGAAGAAGAGCATCAGTGCAG 61.539 44.000 3.03 0.00 43.48 4.41
2521 2590 9.498176 GTATACAACTTTTTCCCTAGTTTCTGA 57.502 33.333 0.00 0.00 32.50 3.27
2538 2607 8.883731 CATTAGCAGCAAGTTAAGTATACAACT 58.116 33.333 5.50 4.28 41.49 3.16
2555 2624 3.365820 GTGTTGCATTTCACATTAGCAGC 59.634 43.478 10.78 0.00 36.47 5.25
2621 2690 3.500982 CCACAACATTTCACATTAGCGG 58.499 45.455 0.00 0.00 0.00 5.52
2645 2714 5.891551 AGTAGTTGGAGGAAAAATGTTGTGT 59.108 36.000 0.00 0.00 0.00 3.72
2651 2720 4.321974 GGGCAAGTAGTTGGAGGAAAAATG 60.322 45.833 12.19 0.00 33.87 2.32
2669 2738 4.466015 GGATGAAATAAAAGGTCTGGGCAA 59.534 41.667 0.00 0.00 0.00 4.52
2683 2752 7.782168 TGTAACTTATGCCCAATGGATGAAATA 59.218 33.333 0.00 0.00 0.00 1.40
2713 2782 9.927081 ATTTCAGAAAACTATCATAACCCATCT 57.073 29.630 0.00 0.00 0.00 2.90
2714 2783 9.956720 CATTTCAGAAAACTATCATAACCCATC 57.043 33.333 0.00 0.00 0.00 3.51
2715 2784 8.416329 GCATTTCAGAAAACTATCATAACCCAT 58.584 33.333 0.00 0.00 0.00 4.00
2780 2892 7.453752 AGCGTCTTATATTTAGGAATGGAGGTA 59.546 37.037 0.00 0.00 0.00 3.08
2781 2893 6.270231 AGCGTCTTATATTTAGGAATGGAGGT 59.730 38.462 0.00 0.00 0.00 3.85
2782 2894 6.591834 CAGCGTCTTATATTTAGGAATGGAGG 59.408 42.308 0.00 0.00 0.00 4.30
2783 2895 6.591834 CCAGCGTCTTATATTTAGGAATGGAG 59.408 42.308 0.00 0.00 0.00 3.86
2785 2897 5.643777 CCCAGCGTCTTATATTTAGGAATGG 59.356 44.000 0.00 0.00 0.00 3.16
2786 2898 5.643777 CCCCAGCGTCTTATATTTAGGAATG 59.356 44.000 0.00 0.00 0.00 2.67
2787 2899 5.803470 GCCCCAGCGTCTTATATTTAGGAAT 60.803 44.000 0.00 0.00 0.00 3.01
2788 2900 4.504340 GCCCCAGCGTCTTATATTTAGGAA 60.504 45.833 0.00 0.00 0.00 3.36
2789 2901 3.007614 GCCCCAGCGTCTTATATTTAGGA 59.992 47.826 0.00 0.00 0.00 2.94
2790 2902 3.244422 TGCCCCAGCGTCTTATATTTAGG 60.244 47.826 0.00 0.00 44.31 2.69
2791 2903 3.997021 CTGCCCCAGCGTCTTATATTTAG 59.003 47.826 0.00 0.00 44.31 1.85
2792 2904 3.389983 ACTGCCCCAGCGTCTTATATTTA 59.610 43.478 0.00 0.00 44.31 1.40
2793 2905 2.172717 ACTGCCCCAGCGTCTTATATTT 59.827 45.455 0.00 0.00 44.31 1.40
2794 2906 1.768870 ACTGCCCCAGCGTCTTATATT 59.231 47.619 0.00 0.00 44.31 1.28
2795 2907 1.424638 ACTGCCCCAGCGTCTTATAT 58.575 50.000 0.00 0.00 44.31 0.86
2796 2908 1.200519 AACTGCCCCAGCGTCTTATA 58.799 50.000 0.00 0.00 44.31 0.98
2797 2909 0.328258 AAACTGCCCCAGCGTCTTAT 59.672 50.000 0.00 0.00 44.31 1.73
2798 2910 0.978151 TAAACTGCCCCAGCGTCTTA 59.022 50.000 0.00 0.00 44.31 2.10
2799 2911 0.109723 TTAAACTGCCCCAGCGTCTT 59.890 50.000 0.00 0.00 44.31 3.01
2800 2912 0.109723 TTTAAACTGCCCCAGCGTCT 59.890 50.000 0.00 0.00 44.31 4.18
2801 2913 1.173913 ATTTAAACTGCCCCAGCGTC 58.826 50.000 0.00 0.00 44.31 5.19
2802 2914 1.627864 AATTTAAACTGCCCCAGCGT 58.372 45.000 0.00 0.00 44.31 5.07
2803 2915 3.859411 TTAATTTAAACTGCCCCAGCG 57.141 42.857 0.00 0.00 44.31 5.18
2813 2925 5.291178 ACGTTGGGGCAGTTTAATTTAAAC 58.709 37.500 19.74 19.74 46.36 2.01
2814 2926 5.302313 AGACGTTGGGGCAGTTTAATTTAAA 59.698 36.000 0.00 0.00 0.00 1.52
2815 2927 4.828387 AGACGTTGGGGCAGTTTAATTTAA 59.172 37.500 0.00 0.00 0.00 1.52
2816 2928 4.400120 AGACGTTGGGGCAGTTTAATTTA 58.600 39.130 0.00 0.00 0.00 1.40
2817 2929 3.227614 AGACGTTGGGGCAGTTTAATTT 58.772 40.909 0.00 0.00 0.00 1.82
2818 2930 2.871453 AGACGTTGGGGCAGTTTAATT 58.129 42.857 0.00 0.00 0.00 1.40
2819 2931 2.579410 AGACGTTGGGGCAGTTTAAT 57.421 45.000 0.00 0.00 0.00 1.40
2820 2932 2.351706 AAGACGTTGGGGCAGTTTAA 57.648 45.000 0.00 0.00 0.00 1.52
2821 2933 3.706600 ATAAGACGTTGGGGCAGTTTA 57.293 42.857 0.00 0.00 0.00 2.01
2822 2934 2.579410 ATAAGACGTTGGGGCAGTTT 57.421 45.000 0.00 0.00 0.00 2.66
2823 2935 3.926058 ATATAAGACGTTGGGGCAGTT 57.074 42.857 0.00 0.00 0.00 3.16
2824 2936 3.926058 AATATAAGACGTTGGGGCAGT 57.074 42.857 0.00 0.00 0.00 4.40
2825 2937 4.755123 CCTAAATATAAGACGTTGGGGCAG 59.245 45.833 0.00 0.00 0.00 4.85
2826 2938 4.409574 TCCTAAATATAAGACGTTGGGGCA 59.590 41.667 0.00 0.00 0.00 5.36
2827 2939 4.964593 TCCTAAATATAAGACGTTGGGGC 58.035 43.478 0.00 0.00 0.00 5.80
2828 2940 6.589135 ACTTCCTAAATATAAGACGTTGGGG 58.411 40.000 0.00 0.00 0.00 4.96
2845 2957 9.944376 GATGTTATCTTTGCCATATACTTCCTA 57.056 33.333 0.00 0.00 0.00 2.94
2846 2958 8.664079 AGATGTTATCTTTGCCATATACTTCCT 58.336 33.333 0.00 0.00 35.76 3.36
2847 2959 8.854614 AGATGTTATCTTTGCCATATACTTCC 57.145 34.615 0.00 0.00 35.76 3.46
2848 2960 9.717942 AGAGATGTTATCTTTGCCATATACTTC 57.282 33.333 0.00 0.00 40.38 3.01
2850 2962 9.717942 GAAGAGATGTTATCTTTGCCATATACT 57.282 33.333 0.00 0.00 40.38 2.12
2851 2963 9.494271 TGAAGAGATGTTATCTTTGCCATATAC 57.506 33.333 0.00 0.00 40.38 1.47
2853 2965 9.584008 AATGAAGAGATGTTATCTTTGCCATAT 57.416 29.630 0.00 0.00 40.38 1.78
2854 2966 8.985315 AATGAAGAGATGTTATCTTTGCCATA 57.015 30.769 0.00 0.00 40.38 2.74
2855 2967 7.778853 AGAATGAAGAGATGTTATCTTTGCCAT 59.221 33.333 0.00 0.00 40.38 4.40
2856 2968 7.066645 CAGAATGAAGAGATGTTATCTTTGCCA 59.933 37.037 0.00 0.00 37.97 4.92
2857 2969 7.416022 CAGAATGAAGAGATGTTATCTTTGCC 58.584 38.462 0.00 0.00 37.97 4.52
2858 2970 7.416022 CCAGAATGAAGAGATGTTATCTTTGC 58.584 38.462 0.00 0.00 37.97 3.68
2859 2971 7.282675 AGCCAGAATGAAGAGATGTTATCTTTG 59.717 37.037 0.00 0.00 37.97 2.77
2860 2972 7.344913 AGCCAGAATGAAGAGATGTTATCTTT 58.655 34.615 0.00 0.00 37.97 2.52
3152 3314 5.712152 AAAGTTGCCTTCCATTAGTTCAG 57.288 39.130 0.00 0.00 0.00 3.02
3161 3323 3.565307 AGATCACAAAAGTTGCCTTCCA 58.435 40.909 0.00 0.00 0.00 3.53
3299 3461 6.020041 GCAGTAGACGTAATTAACCTACTTGC 60.020 42.308 14.83 15.94 38.26 4.01
3305 3467 6.034161 ACAAGCAGTAGACGTAATTAACCT 57.966 37.500 0.00 0.00 0.00 3.50
3315 3477 3.604772 GCAGTCAAAACAAGCAGTAGACG 60.605 47.826 0.00 0.00 34.07 4.18
3317 3479 3.540617 TGCAGTCAAAACAAGCAGTAGA 58.459 40.909 0.00 0.00 34.89 2.59
3340 3502 8.217131 TGTGGTCTTATGATTGAAGATCATTG 57.783 34.615 6.80 2.35 43.93 2.82
3382 3544 4.397417 GCTTGCTGTAAGATCCAACAGAAT 59.603 41.667 22.80 0.00 44.79 2.40
3412 3574 4.018490 TCTAGGAATACAGTGGCGTTACA 58.982 43.478 0.00 0.00 0.00 2.41
3413 3575 4.337555 TCTCTAGGAATACAGTGGCGTTAC 59.662 45.833 0.00 0.00 0.00 2.50
3418 3580 9.635404 AGTATATATCTCTAGGAATACAGTGGC 57.365 37.037 0.00 0.00 0.00 5.01
3470 3643 6.878923 AGTACATTGTTCTGTGCTTGCTATAA 59.121 34.615 0.00 0.00 38.71 0.98
3479 3652 3.304659 CCAACCAGTACATTGTTCTGTGC 60.305 47.826 18.48 0.00 30.71 4.57
3494 3667 1.200716 CTTGTATGCTGCACCAACCAG 59.799 52.381 3.57 1.51 0.00 4.00
3501 3674 3.684305 TGTCACATACTTGTATGCTGCAC 59.316 43.478 17.64 10.87 33.76 4.57
3581 3755 1.998530 CCCTAGTTGGCCATGTCCA 59.001 57.895 6.09 0.00 0.00 4.02
3624 3798 3.507622 AGAGCTTTAATGGCAAGTGGAAC 59.492 43.478 0.00 0.00 0.00 3.62
3728 3902 8.497745 ACCACCATGAATGACTATCTTTAAGAT 58.502 33.333 12.39 12.39 38.70 2.40
3771 3945 5.347364 GTGAGACTAAGAACATGTCAAGAGC 59.653 44.000 0.00 0.00 33.56 4.09
3808 3982 9.309516 CTACGATTTACTAGTAAAGAAATGGCA 57.690 33.333 27.21 7.17 38.30 4.92
3835 4010 8.162578 TGAATCTTCAGCACAGACAATGTGTG 62.163 42.308 9.08 9.08 45.60 3.82
3841 4016 5.046376 TCCTATGAATCTTCAGCACAGACAA 60.046 40.000 0.00 0.00 41.08 3.18
3847 4022 5.298777 AGCATTTCCTATGAATCTTCAGCAC 59.701 40.000 0.00 0.00 41.08 4.40
3849 4024 7.502120 TTAGCATTTCCTATGAATCTTCAGC 57.498 36.000 0.00 0.00 41.08 4.26
3870 4045 4.517952 TGTGGTGGTGATGCATTTTTAG 57.482 40.909 0.00 0.00 0.00 1.85
3875 4050 1.820519 GTCATGTGGTGGTGATGCATT 59.179 47.619 0.00 0.00 0.00 3.56
3881 4056 2.106338 ACTCAATGTCATGTGGTGGTGA 59.894 45.455 0.00 0.00 0.00 4.02
3905 4086 7.869016 TCAACGTAGACAGTTTTATTCTCAG 57.131 36.000 0.00 0.00 0.00 3.35
4018 4199 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4019 4200 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4020 4201 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4021 4202 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4022 4203 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4023 4204 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4024 4205 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4025 4206 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4026 4207 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4027 4208 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
4028 4209 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
4029 4210 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
4030 4211 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4031 4212 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4032 4213 9.975218 ATTAGTACAAAGTTGGGTCATCTATTT 57.025 29.630 0.00 0.00 0.00 1.40
4033 4214 9.975218 AATTAGTACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
4034 4215 9.975218 AAATTAGTACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
4035 4216 9.802039 AAAATTAGTACAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
4036 4217 8.706322 AAAATTAGTACAAAGTTGGGTCATCT 57.294 30.769 0.00 0.00 0.00 2.90
4038 4219 9.582648 ACTAAAATTAGTACAAAGTTGGGTCAT 57.417 29.630 4.05 0.00 41.92 3.06
4039 4220 8.983702 ACTAAAATTAGTACAAAGTTGGGTCA 57.016 30.769 4.05 0.00 41.92 4.02
4062 4243 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
4063 4244 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
4064 4245 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
4065 4246 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
4066 4247 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
4067 4248 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4068 4249 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4069 4250 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4070 4251 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4071 4252 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4072 4253 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4073 4254 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4074 4255 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4075 4256 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4076 4257 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4077 4258 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4078 4259 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4079 4260 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4080 4261 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4081 4262 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
4082 4263 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
4083 4264 4.076394 CAATTACTCCCTCCGTTCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
4084 4265 3.328343 TCAATTACTCCCTCCGTTCCAAA 59.672 43.478 0.00 0.00 0.00 3.28
4085 4266 2.907696 TCAATTACTCCCTCCGTTCCAA 59.092 45.455 0.00 0.00 0.00 3.53
4086 4267 2.500098 CTCAATTACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
4087 4268 2.764572 TCTCAATTACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
4088 4269 4.674281 ATCTCAATTACTCCCTCCGTTC 57.326 45.455 0.00 0.00 0.00 3.95
4089 4270 5.839063 TCATATCTCAATTACTCCCTCCGTT 59.161 40.000 0.00 0.00 0.00 4.44
4090 4271 5.394738 TCATATCTCAATTACTCCCTCCGT 58.605 41.667 0.00 0.00 0.00 4.69
4091 4272 5.712446 TCTCATATCTCAATTACTCCCTCCG 59.288 44.000 0.00 0.00 0.00 4.63
4092 4273 6.951198 TCTCTCATATCTCAATTACTCCCTCC 59.049 42.308 0.00 0.00 0.00 4.30
4093 4274 7.888021 TCTCTCTCATATCTCAATTACTCCCTC 59.112 40.741 0.00 0.00 0.00 4.30
4094 4275 7.764617 TCTCTCTCATATCTCAATTACTCCCT 58.235 38.462 0.00 0.00 0.00 4.20
4095 4276 8.415950 TTCTCTCTCATATCTCAATTACTCCC 57.584 38.462 0.00 0.00 0.00 4.30
4165 4350 6.308766 CCTGTTTCTTGCATAATTACAACAGC 59.691 38.462 0.00 0.00 38.92 4.40
4182 4367 1.890876 TGTATGCAACGCCTGTTTCT 58.109 45.000 0.00 0.00 35.72 2.52
4313 4498 6.659745 TGGACTAACTGAAGTTTAGCTACA 57.340 37.500 0.21 0.00 39.31 2.74
4460 4869 7.599245 GTGCTGAAATACTTGTACAGAAGTAGT 59.401 37.037 11.90 7.49 40.81 2.73
4461 4870 7.598869 TGTGCTGAAATACTTGTACAGAAGTAG 59.401 37.037 11.90 2.37 40.81 2.57
4462 4871 7.438564 TGTGCTGAAATACTTGTACAGAAGTA 58.561 34.615 9.33 9.33 41.53 2.24
4464 4873 6.785488 TGTGCTGAAATACTTGTACAGAAG 57.215 37.500 0.00 0.00 0.00 2.85
4465 4874 6.934083 TGATGTGCTGAAATACTTGTACAGAA 59.066 34.615 0.00 0.00 0.00 3.02
4466 4875 6.368791 GTGATGTGCTGAAATACTTGTACAGA 59.631 38.462 0.00 0.00 0.00 3.41
4467 4876 6.147656 TGTGATGTGCTGAAATACTTGTACAG 59.852 38.462 0.00 0.00 0.00 2.74
4468 4877 5.994668 TGTGATGTGCTGAAATACTTGTACA 59.005 36.000 0.00 0.00 0.00 2.90
4469 4878 6.480524 TGTGATGTGCTGAAATACTTGTAC 57.519 37.500 0.00 0.00 0.00 2.90
4470 4879 7.529158 CAATGTGATGTGCTGAAATACTTGTA 58.471 34.615 0.00 0.00 0.00 2.41
4472 4881 5.287752 GCAATGTGATGTGCTGAAATACTTG 59.712 40.000 0.00 0.00 37.78 3.16
4473 4882 5.047872 TGCAATGTGATGTGCTGAAATACTT 60.048 36.000 0.00 0.00 41.48 2.24
4474 4883 4.460034 TGCAATGTGATGTGCTGAAATACT 59.540 37.500 0.00 0.00 41.48 2.12
4475 4884 4.735985 TGCAATGTGATGTGCTGAAATAC 58.264 39.130 0.00 0.00 41.48 1.89
4476 4885 5.344884 CATGCAATGTGATGTGCTGAAATA 58.655 37.500 0.00 0.00 40.20 1.40
4477 4886 3.945981 TGCAATGTGATGTGCTGAAAT 57.054 38.095 0.00 0.00 41.48 2.17
4478 4887 3.580731 CATGCAATGTGATGTGCTGAAA 58.419 40.909 0.00 0.00 40.20 2.69
4479 4888 3.224884 CATGCAATGTGATGTGCTGAA 57.775 42.857 0.00 0.00 40.20 3.02
4480 4889 2.931512 CATGCAATGTGATGTGCTGA 57.068 45.000 0.00 0.00 40.20 4.26
4592 5001 2.731572 CAGTCTCTTGCATTTCCCCAT 58.268 47.619 0.00 0.00 0.00 4.00
4680 5089 0.548031 GGGCTTGGATCCTCATCACA 59.452 55.000 14.23 0.00 0.00 3.58
4875 5284 1.804748 GTTTTCGCCAACTGAGTAGGG 59.195 52.381 0.00 0.00 0.00 3.53
5220 9026 8.425577 ACCAAAGAGTAAGACATGAATAATCG 57.574 34.615 0.00 0.00 0.00 3.34
5236 9042 3.248024 TGACACCATCCTACCAAAGAGT 58.752 45.455 0.00 0.00 0.00 3.24
5295 9101 9.691362 GCTTTTTACTTACATGGAATCAAAGAA 57.309 29.630 12.12 1.29 0.00 2.52
5340 9146 1.260544 GCAAGGGAAGTGGCAAAGAT 58.739 50.000 0.00 0.00 0.00 2.40
5393 9204 2.158755 AGCAAGCAGGTAAGTGAAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
5400 9211 2.224621 ACACATGAGCAAGCAGGTAAGT 60.225 45.455 0.00 0.00 30.79 2.24
5401 9212 2.430465 ACACATGAGCAAGCAGGTAAG 58.570 47.619 0.00 0.00 30.79 2.34
5536 9356 2.357637 ACAAACATGTTCCACTCAACCG 59.642 45.455 12.39 0.00 0.00 4.44
5611 9433 5.581126 TTTCATATGAACACCTGGCATTC 57.419 39.130 17.76 0.00 33.13 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.