Multiple sequence alignment - TraesCS5A01G363900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G363900 chr5A 100.000 2929 0 0 1 2929 564352787 564349859 0.000000e+00 5409.0
1 TraesCS5A01G363900 chr5A 96.912 2461 62 4 1 2460 570487987 570490434 0.000000e+00 4111.0
2 TraesCS5A01G363900 chr5A 97.033 337 10 0 2593 2929 645711963 645712299 4.240000e-158 568.0
3 TraesCS5A01G363900 chr5A 78.621 435 71 19 2482 2903 26028278 26027853 4.810000e-68 268.0
4 TraesCS5A01G363900 chr5A 98.571 70 1 0 1961 2030 564350776 564350707 1.100000e-24 124.0
5 TraesCS5A01G363900 chr2A 97.235 2459 54 3 1 2458 57825595 57828040 0.000000e+00 4152.0
6 TraesCS5A01G363900 chr2A 100.000 69 0 0 2013 2081 57827556 57827624 8.520000e-26 128.0
7 TraesCS5A01G363900 chr2A 97.143 70 2 0 1961 2030 57827606 57827675 5.130000e-23 119.0
8 TraesCS5A01G363900 chr2D 93.356 2047 104 11 1 2030 330865319 330863288 0.000000e+00 2998.0
9 TraesCS5A01G363900 chr2D 89.512 1373 102 19 776 2125 469107489 469106136 0.000000e+00 1700.0
10 TraesCS5A01G363900 chr2D 91.617 1002 72 10 1 994 469108346 469107349 0.000000e+00 1375.0
11 TraesCS5A01G363900 chr2D 87.764 474 52 6 2458 2929 12198706 12199175 1.530000e-152 549.0
12 TraesCS5A01G363900 chr2D 89.820 334 29 3 2126 2456 631747916 631747585 9.700000e-115 424.0
13 TraesCS5A01G363900 chr2D 94.030 67 3 1 2015 2080 631747975 631747909 1.860000e-17 100.0
14 TraesCS5A01G363900 chrUn 91.500 2153 136 25 1 2125 96552665 96554798 0.000000e+00 2918.0
15 TraesCS5A01G363900 chrUn 83.795 469 43 23 2012 2458 96554627 96555084 5.840000e-112 414.0
16 TraesCS5A01G363900 chr7A 92.687 1217 73 11 825 2029 48781641 48782853 0.000000e+00 1740.0
17 TraesCS5A01G363900 chr7A 97.085 343 10 0 2587 2929 295326014 295326356 1.960000e-161 579.0
18 TraesCS5A01G363900 chr2B 92.605 1217 74 11 825 2029 677292341 677293553 0.000000e+00 1735.0
19 TraesCS5A01G363900 chr4D 91.386 1277 76 20 768 2029 459191778 459193035 0.000000e+00 1718.0
20 TraesCS5A01G363900 chr4D 91.600 1000 74 10 1 994 459190933 459191928 0.000000e+00 1373.0
21 TraesCS5A01G363900 chr4D 80.844 1138 163 30 904 2013 348041172 348040062 0.000000e+00 843.0
22 TraesCS5A01G363900 chr4D 90.533 338 27 3 2126 2460 459193028 459193363 2.680000e-120 442.0
23 TraesCS5A01G363900 chr4D 82.708 480 66 14 2458 2926 337231217 337231690 7.550000e-111 411.0
24 TraesCS5A01G363900 chr4D 91.549 71 4 2 2012 2080 459192965 459193035 2.400000e-16 97.1
25 TraesCS5A01G363900 chr1B 90.538 1300 92 19 746 2029 127025955 127024671 0.000000e+00 1690.0
26 TraesCS5A01G363900 chr1B 90.691 999 82 11 1 994 127026778 127025786 0.000000e+00 1319.0
27 TraesCS5A01G363900 chr1B 92.148 433 21 6 1609 2029 470720338 470720769 1.500000e-167 599.0
28 TraesCS5A01G363900 chr1B 84.581 454 39 21 2014 2458 470720703 470721134 3.490000e-114 422.0
29 TraesCS5A01G363900 chr1A 89.761 1299 98 18 746 2030 461966372 461965095 0.000000e+00 1629.0
30 TraesCS5A01G363900 chr1A 92.191 986 66 11 1 979 35564413 35563432 0.000000e+00 1384.0
31 TraesCS5A01G363900 chr1A 91.309 1001 76 10 1 994 461967198 461966202 0.000000e+00 1356.0
32 TraesCS5A01G363900 chr1A 90.373 644 41 9 1395 2030 35559048 35558418 0.000000e+00 826.0
33 TraesCS5A01G363900 chr1A 97.033 337 10 0 2593 2929 398190893 398191229 4.240000e-158 568.0
34 TraesCS5A01G363900 chr1A 99.265 136 1 0 2458 2593 273528354 273528219 2.250000e-61 246.0
35 TraesCS5A01G363900 chr1A 99.265 136 1 0 2458 2593 406265334 406265469 2.250000e-61 246.0
36 TraesCS5A01G363900 chr1A 99.265 136 1 0 2458 2593 494480673 494480538 2.250000e-61 246.0
37 TraesCS5A01G363900 chr1A 99.265 136 1 0 2458 2593 537586223 537586358 2.250000e-61 246.0
38 TraesCS5A01G363900 chr7B 88.305 1351 104 29 746 2075 551484303 551482986 0.000000e+00 1570.0
39 TraesCS5A01G363900 chr7B 90.591 999 84 10 1 994 551485128 551484135 0.000000e+00 1315.0
40 TraesCS5A01G363900 chr7B 83.660 459 39 17 2014 2460 551483096 551482662 1.640000e-107 399.0
41 TraesCS5A01G363900 chr3D 82.074 1032 157 16 977 1997 339817279 339818293 0.000000e+00 856.0
42 TraesCS5A01G363900 chr3D 84.615 793 106 11 964 1754 148503703 148502925 0.000000e+00 774.0
43 TraesCS5A01G363900 chr3D 90.671 343 26 4 2125 2464 6992386 6992725 4.450000e-123 451.0
44 TraesCS5A01G363900 chr3D 91.131 327 19 5 1712 2029 5544737 5545062 4.480000e-118 435.0
45 TraesCS5A01G363900 chr3D 90.179 336 28 3 2126 2458 5545055 5545388 1.610000e-117 433.0
46 TraesCS5A01G363900 chr3D 91.429 70 5 1 2012 2080 6992325 6992394 8.640000e-16 95.3
47 TraesCS5A01G363900 chr7D 89.242 660 48 11 1380 2029 422343533 422344179 0.000000e+00 804.0
48 TraesCS5A01G363900 chr7D 83.871 465 50 19 2012 2458 69948474 69948931 1.260000e-113 420.0
49 TraesCS5A01G363900 chr5B 96.507 458 14 2 2003 2460 92572069 92572524 0.000000e+00 756.0
50 TraesCS5A01G363900 chr5B 97.222 72 2 0 1959 2030 92572074 92572145 3.960000e-24 122.0
51 TraesCS5A01G363900 chr6A 97.033 337 10 0 2593 2929 615499920 615500256 4.240000e-158 568.0
52 TraesCS5A01G363900 chr6A 96.439 337 12 0 2593 2929 506598984 506598648 9.170000e-155 556.0
53 TraesCS5A01G363900 chr6A 99.265 136 1 0 2458 2593 66866369 66866504 2.250000e-61 246.0
54 TraesCS5A01G363900 chr3A 97.033 337 10 0 2593 2929 568886767 568886431 4.240000e-158 568.0
55 TraesCS5A01G363900 chr3A 97.033 337 10 0 2593 2929 568916237 568915901 4.240000e-158 568.0
56 TraesCS5A01G363900 chr3A 83.193 476 62 11 2458 2920 81717996 81718466 1.260000e-113 420.0
57 TraesCS5A01G363900 chr3B 92.582 337 23 2 2122 2457 564172724 564173059 1.580000e-132 483.0
58 TraesCS5A01G363900 chr3B 90.351 342 27 4 2126 2464 8506550 8506888 7.450000e-121 444.0
59 TraesCS5A01G363900 chr3B 84.167 360 36 13 2122 2462 597428496 597428853 2.180000e-86 329.0
60 TraesCS5A01G363900 chr3B 86.192 239 27 5 2224 2460 576053190 576052956 1.350000e-63 254.0
61 TraesCS5A01G363900 chr4A 87.611 339 31 6 2122 2460 445298246 445297919 1.650000e-102 383.0
62 TraesCS5A01G363900 chr6D 93.671 79 4 1 2039 2116 175758110 175758032 1.840000e-22 117.0
63 TraesCS5A01G363900 chr6D 83.908 87 5 6 1988 2071 175758110 175758030 1.130000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G363900 chr5A 564349859 564352787 2928 True 2766.500000 5409 99.285500 1 2929 2 chr5A.!!$R2 2928
1 TraesCS5A01G363900 chr5A 570487987 570490434 2447 False 4111.000000 4111 96.912000 1 2460 1 chr5A.!!$F1 2459
2 TraesCS5A01G363900 chr2A 57825595 57828040 2445 False 1466.333333 4152 98.126000 1 2458 3 chr2A.!!$F1 2457
3 TraesCS5A01G363900 chr2D 330863288 330865319 2031 True 2998.000000 2998 93.356000 1 2030 1 chr2D.!!$R1 2029
4 TraesCS5A01G363900 chr2D 469106136 469108346 2210 True 1537.500000 1700 90.564500 1 2125 2 chr2D.!!$R2 2124
5 TraesCS5A01G363900 chrUn 96552665 96555084 2419 False 1666.000000 2918 87.647500 1 2458 2 chrUn.!!$F1 2457
6 TraesCS5A01G363900 chr7A 48781641 48782853 1212 False 1740.000000 1740 92.687000 825 2029 1 chr7A.!!$F1 1204
7 TraesCS5A01G363900 chr2B 677292341 677293553 1212 False 1735.000000 1735 92.605000 825 2029 1 chr2B.!!$F1 1204
8 TraesCS5A01G363900 chr4D 459190933 459193363 2430 False 907.525000 1718 91.267000 1 2460 4 chr4D.!!$F2 2459
9 TraesCS5A01G363900 chr4D 348040062 348041172 1110 True 843.000000 843 80.844000 904 2013 1 chr4D.!!$R1 1109
10 TraesCS5A01G363900 chr1B 127024671 127026778 2107 True 1504.500000 1690 90.614500 1 2029 2 chr1B.!!$R1 2028
11 TraesCS5A01G363900 chr1B 470720338 470721134 796 False 510.500000 599 88.364500 1609 2458 2 chr1B.!!$F1 849
12 TraesCS5A01G363900 chr1A 461965095 461967198 2103 True 1492.500000 1629 90.535000 1 2030 2 chr1A.!!$R5 2029
13 TraesCS5A01G363900 chr1A 35563432 35564413 981 True 1384.000000 1384 92.191000 1 979 1 chr1A.!!$R2 978
14 TraesCS5A01G363900 chr1A 35558418 35559048 630 True 826.000000 826 90.373000 1395 2030 1 chr1A.!!$R1 635
15 TraesCS5A01G363900 chr7B 551482662 551485128 2466 True 1094.666667 1570 87.518667 1 2460 3 chr7B.!!$R1 2459
16 TraesCS5A01G363900 chr3D 339817279 339818293 1014 False 856.000000 856 82.074000 977 1997 1 chr3D.!!$F1 1020
17 TraesCS5A01G363900 chr3D 148502925 148503703 778 True 774.000000 774 84.615000 964 1754 1 chr3D.!!$R1 790
18 TraesCS5A01G363900 chr3D 5544737 5545388 651 False 434.000000 435 90.655000 1712 2458 2 chr3D.!!$F2 746
19 TraesCS5A01G363900 chr7D 422343533 422344179 646 False 804.000000 804 89.242000 1380 2029 1 chr7D.!!$F2 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 307 1.203001 CCAAGCCTGGGTTCTTACCAA 60.203 52.381 8.43 0.0 46.96 3.67 F
916 921 2.028839 TGCAACATTTTGATGGCTGGAG 60.029 45.455 0.00 0.0 34.24 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1898 0.807496 GGCAAGGTGCTCTTCATCAC 59.193 55.000 0.00 0.0 44.28 3.06 R
2556 2718 1.958579 TCATCACCGGTAAGTATCCCG 59.041 52.381 6.87 0.0 43.82 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.964464 ACCACTCAAAATGTGATGGCAA 59.036 40.909 0.00 0.00 37.94 4.52
303 307 1.203001 CCAAGCCTGGGTTCTTACCAA 60.203 52.381 8.43 0.00 46.96 3.67
530 534 8.575589 TGTTGTGTTCTTCATAATTATGCACTT 58.424 29.630 22.61 0.00 33.76 3.16
557 561 7.173735 TCACAAGGGATCGATGAATTCATTATG 59.826 37.037 21.57 14.38 36.57 1.90
597 601 2.819608 ACCCAACCAATTCGAACATCAG 59.180 45.455 0.00 0.00 0.00 2.90
653 658 2.806945 TAGGCTACAAATTGCTGCCT 57.193 45.000 26.65 26.65 46.17 4.75
835 840 3.747854 TTGCAACATTTTGATGGCTGA 57.252 38.095 0.00 0.00 34.24 4.26
916 921 2.028839 TGCAACATTTTGATGGCTGGAG 60.029 45.455 0.00 0.00 34.24 3.86
1251 1336 3.399305 AGAAGTGGAGGAAGATTTGGGTT 59.601 43.478 0.00 0.00 0.00 4.11
1283 1374 9.130661 TGTCAATTTGAAGAATTTAAGTGGAGA 57.869 29.630 0.00 0.00 0.00 3.71
1483 1581 6.263842 CCAATTGAACACTATCATGCTATGGT 59.736 38.462 7.12 0.00 0.00 3.55
1798 1898 8.233190 GGATGTAGTCTCTTGTTTGAAAGAATG 58.767 37.037 0.00 0.00 35.79 2.67
1948 2057 8.698973 TTCTAAATTTGGTATGGTTGTCAAGA 57.301 30.769 0.00 0.00 0.00 3.02
1966 2079 6.698008 TCAAGAATGTGAACTTGACATGTT 57.302 33.333 0.00 6.43 44.59 2.71
2277 2439 9.737427 TTTCTTGAAAATACAAACGAAATGCTA 57.263 25.926 0.00 0.00 0.00 3.49
2303 2465 8.394877 ACCGAAAATTTGAATTTTTGTTCTTCC 58.605 29.630 19.96 6.00 45.70 3.46
2460 2622 3.139397 TCCTCAACCAAACACACCCTTAT 59.861 43.478 0.00 0.00 0.00 1.73
2461 2623 3.255642 CCTCAACCAAACACACCCTTATG 59.744 47.826 0.00 0.00 0.00 1.90
2462 2624 3.888930 CTCAACCAAACACACCCTTATGT 59.111 43.478 0.00 0.00 0.00 2.29
2463 2625 4.282496 TCAACCAAACACACCCTTATGTT 58.718 39.130 0.00 0.00 40.76 2.71
2465 2627 5.187967 TCAACCAAACACACCCTTATGTTTT 59.812 36.000 0.00 0.00 44.61 2.43
2466 2628 5.270893 ACCAAACACACCCTTATGTTTTC 57.729 39.130 0.00 0.00 44.61 2.29
2467 2629 4.712337 ACCAAACACACCCTTATGTTTTCA 59.288 37.500 0.00 0.00 44.61 2.69
2468 2630 5.365314 ACCAAACACACCCTTATGTTTTCAT 59.635 36.000 0.00 0.00 44.61 2.57
2469 2631 5.925969 CCAAACACACCCTTATGTTTTCATC 59.074 40.000 0.00 0.00 44.61 2.92
2470 2632 6.462207 CCAAACACACCCTTATGTTTTCATCA 60.462 38.462 0.00 0.00 44.61 3.07
2471 2633 6.723298 AACACACCCTTATGTTTTCATCAA 57.277 33.333 0.00 0.00 41.25 2.57
2472 2634 6.916360 ACACACCCTTATGTTTTCATCAAT 57.084 33.333 0.00 0.00 41.25 2.57
2473 2635 8.415950 AACACACCCTTATGTTTTCATCAATA 57.584 30.769 0.00 0.00 41.25 1.90
2474 2636 8.593945 ACACACCCTTATGTTTTCATCAATAT 57.406 30.769 0.00 0.00 41.25 1.28
2475 2637 9.693739 ACACACCCTTATGTTTTCATCAATATA 57.306 29.630 0.00 0.00 41.25 0.86
2499 2661 9.709495 ATATGAGAGTTCTTGATCTTATCTTGC 57.291 33.333 0.00 0.00 0.00 4.01
2500 2662 6.939622 TGAGAGTTCTTGATCTTATCTTGCA 58.060 36.000 0.00 0.00 0.00 4.08
2501 2663 7.389232 TGAGAGTTCTTGATCTTATCTTGCAA 58.611 34.615 0.00 0.00 0.00 4.08
2502 2664 7.548427 TGAGAGTTCTTGATCTTATCTTGCAAG 59.452 37.037 20.81 20.81 37.79 4.01
2503 2665 7.393216 AGAGTTCTTGATCTTATCTTGCAAGT 58.607 34.615 25.19 15.13 37.71 3.16
2504 2666 7.548780 AGAGTTCTTGATCTTATCTTGCAAGTC 59.451 37.037 25.19 14.82 37.71 3.01
2505 2667 7.393216 AGTTCTTGATCTTATCTTGCAAGTCT 58.607 34.615 25.19 16.18 37.71 3.24
2506 2668 8.535335 AGTTCTTGATCTTATCTTGCAAGTCTA 58.465 33.333 25.19 15.23 37.71 2.59
2507 2669 9.323985 GTTCTTGATCTTATCTTGCAAGTCTAT 57.676 33.333 25.19 14.41 37.71 1.98
2510 2672 9.979578 CTTGATCTTATCTTGCAAGTCTATAGT 57.020 33.333 25.19 8.23 33.22 2.12
2511 2673 9.973450 TTGATCTTATCTTGCAAGTCTATAGTC 57.027 33.333 25.19 15.88 0.00 2.59
2512 2674 9.136323 TGATCTTATCTTGCAAGTCTATAGTCA 57.864 33.333 25.19 17.88 0.00 3.41
2513 2675 9.405587 GATCTTATCTTGCAAGTCTATAGTCAC 57.594 37.037 25.19 6.67 0.00 3.67
2514 2676 7.717568 TCTTATCTTGCAAGTCTATAGTCACC 58.282 38.462 25.19 0.00 0.00 4.02
2515 2677 7.561722 TCTTATCTTGCAAGTCTATAGTCACCT 59.438 37.037 25.19 0.00 0.00 4.00
2516 2678 8.762481 TTATCTTGCAAGTCTATAGTCACCTA 57.238 34.615 25.19 1.76 0.00 3.08
2517 2679 7.847711 ATCTTGCAAGTCTATAGTCACCTAT 57.152 36.000 25.19 4.16 37.62 2.57
2518 2680 7.661536 TCTTGCAAGTCTATAGTCACCTATT 57.338 36.000 25.19 0.00 35.49 1.73
2519 2681 8.762481 TCTTGCAAGTCTATAGTCACCTATTA 57.238 34.615 25.19 0.00 35.49 0.98
2520 2682 9.368416 TCTTGCAAGTCTATAGTCACCTATTAT 57.632 33.333 25.19 0.00 35.49 1.28
2521 2683 9.416794 CTTGCAAGTCTATAGTCACCTATTATG 57.583 37.037 18.65 0.00 35.49 1.90
2522 2684 8.478775 TGCAAGTCTATAGTCACCTATTATGT 57.521 34.615 0.00 0.00 35.49 2.29
2523 2685 8.360390 TGCAAGTCTATAGTCACCTATTATGTG 58.640 37.037 0.00 0.00 35.49 3.21
2524 2686 8.361139 GCAAGTCTATAGTCACCTATTATGTGT 58.639 37.037 0.00 0.00 35.49 3.72
2533 2695 8.262601 AGTCACCTATTATGTGTTATGATCCA 57.737 34.615 0.00 0.00 35.25 3.41
2534 2696 8.884323 AGTCACCTATTATGTGTTATGATCCAT 58.116 33.333 0.00 0.00 35.25 3.41
2535 2697 9.507329 GTCACCTATTATGTGTTATGATCCATT 57.493 33.333 0.00 0.00 35.25 3.16
2541 2703 8.650143 ATTATGTGTTATGATCCATTAACCCC 57.350 34.615 0.00 0.00 0.00 4.95
2542 2704 4.456535 TGTGTTATGATCCATTAACCCCG 58.543 43.478 0.00 0.00 0.00 5.73
2543 2705 4.164413 TGTGTTATGATCCATTAACCCCGA 59.836 41.667 0.00 0.00 0.00 5.14
2544 2706 5.127491 GTGTTATGATCCATTAACCCCGAA 58.873 41.667 0.00 0.00 0.00 4.30
2545 2707 5.238650 GTGTTATGATCCATTAACCCCGAAG 59.761 44.000 0.00 0.00 0.00 3.79
2546 2708 5.104277 TGTTATGATCCATTAACCCCGAAGT 60.104 40.000 0.00 0.00 0.00 3.01
2547 2709 3.275617 TGATCCATTAACCCCGAAGTG 57.724 47.619 0.00 0.00 0.00 3.16
2548 2710 2.841266 TGATCCATTAACCCCGAAGTGA 59.159 45.455 0.00 0.00 0.00 3.41
2549 2711 2.773993 TCCATTAACCCCGAAGTGAC 57.226 50.000 0.00 0.00 0.00 3.67
2550 2712 1.979308 TCCATTAACCCCGAAGTGACA 59.021 47.619 0.00 0.00 0.00 3.58
2551 2713 2.372504 TCCATTAACCCCGAAGTGACAA 59.627 45.455 0.00 0.00 0.00 3.18
2552 2714 3.009695 TCCATTAACCCCGAAGTGACAAT 59.990 43.478 0.00 0.00 0.00 2.71
2553 2715 4.225492 TCCATTAACCCCGAAGTGACAATA 59.775 41.667 0.00 0.00 0.00 1.90
2554 2716 4.944930 CCATTAACCCCGAAGTGACAATAA 59.055 41.667 0.00 0.00 0.00 1.40
2555 2717 5.592688 CCATTAACCCCGAAGTGACAATAAT 59.407 40.000 0.00 0.00 0.00 1.28
2556 2718 6.238648 CCATTAACCCCGAAGTGACAATAATC 60.239 42.308 0.00 0.00 0.00 1.75
2557 2719 2.901249 ACCCCGAAGTGACAATAATCG 58.099 47.619 0.00 0.00 0.00 3.34
2560 2722 3.173668 CCGAAGTGACAATAATCGGGA 57.826 47.619 7.90 0.00 46.97 5.14
2561 2723 3.728845 CCGAAGTGACAATAATCGGGAT 58.271 45.455 7.90 0.00 46.97 3.85
2562 2724 4.878439 CCGAAGTGACAATAATCGGGATA 58.122 43.478 7.90 0.00 46.97 2.59
2563 2725 4.684703 CCGAAGTGACAATAATCGGGATAC 59.315 45.833 7.90 0.00 46.97 2.24
2564 2726 5.509163 CCGAAGTGACAATAATCGGGATACT 60.509 44.000 7.90 0.00 46.97 2.12
2565 2727 5.983720 CGAAGTGACAATAATCGGGATACTT 59.016 40.000 0.00 0.00 0.00 2.24
2566 2728 7.143340 CGAAGTGACAATAATCGGGATACTTA 58.857 38.462 0.00 0.00 0.00 2.24
2567 2729 7.114529 CGAAGTGACAATAATCGGGATACTTAC 59.885 40.741 0.00 0.00 0.00 2.34
2568 2730 6.756221 AGTGACAATAATCGGGATACTTACC 58.244 40.000 0.00 0.00 0.00 2.85
2572 2734 4.796038 ATAATCGGGATACTTACCGGTG 57.204 45.455 19.93 3.27 44.02 4.94
2573 2735 2.669781 AATCGGGATACTTACCGGTGA 58.330 47.619 19.93 8.52 44.02 4.02
2574 2736 3.236896 AATCGGGATACTTACCGGTGAT 58.763 45.455 19.93 4.76 44.02 3.06
2575 2737 2.433868 CGGGATACTTACCGGTGATG 57.566 55.000 19.93 9.60 46.08 3.07
2576 2738 1.958579 CGGGATACTTACCGGTGATGA 59.041 52.381 19.93 0.00 46.08 2.92
2577 2739 2.288030 CGGGATACTTACCGGTGATGAC 60.288 54.545 19.93 4.15 46.08 3.06
2578 2740 2.036862 GGGATACTTACCGGTGATGACC 59.963 54.545 19.93 13.12 39.14 4.02
2589 2751 2.618053 GGTGATGACCGTAGTTTGAGG 58.382 52.381 0.00 0.00 30.61 3.86
2590 2752 2.232941 GGTGATGACCGTAGTTTGAGGA 59.767 50.000 0.00 0.00 30.61 3.71
2591 2753 3.512680 GTGATGACCGTAGTTTGAGGAG 58.487 50.000 0.00 0.00 0.00 3.69
2592 2754 3.056749 GTGATGACCGTAGTTTGAGGAGT 60.057 47.826 0.00 0.00 0.00 3.85
2593 2755 3.056821 TGATGACCGTAGTTTGAGGAGTG 60.057 47.826 0.00 0.00 0.00 3.51
2594 2756 2.589720 TGACCGTAGTTTGAGGAGTGA 58.410 47.619 0.00 0.00 0.00 3.41
2595 2757 2.960384 TGACCGTAGTTTGAGGAGTGAA 59.040 45.455 0.00 0.00 0.00 3.18
2596 2758 3.005472 TGACCGTAGTTTGAGGAGTGAAG 59.995 47.826 0.00 0.00 0.00 3.02
2597 2759 2.299297 ACCGTAGTTTGAGGAGTGAAGG 59.701 50.000 0.00 0.00 0.00 3.46
2598 2760 2.561419 CCGTAGTTTGAGGAGTGAAGGA 59.439 50.000 0.00 0.00 0.00 3.36
2599 2761 3.006537 CCGTAGTTTGAGGAGTGAAGGAA 59.993 47.826 0.00 0.00 0.00 3.36
2600 2762 4.502604 CCGTAGTTTGAGGAGTGAAGGAAA 60.503 45.833 0.00 0.00 0.00 3.13
2601 2763 5.238583 CGTAGTTTGAGGAGTGAAGGAAAT 58.761 41.667 0.00 0.00 0.00 2.17
2602 2764 6.395629 CGTAGTTTGAGGAGTGAAGGAAATA 58.604 40.000 0.00 0.00 0.00 1.40
2603 2765 7.042335 CGTAGTTTGAGGAGTGAAGGAAATAT 58.958 38.462 0.00 0.00 0.00 1.28
2604 2766 7.010552 CGTAGTTTGAGGAGTGAAGGAAATATG 59.989 40.741 0.00 0.00 0.00 1.78
2605 2767 5.649831 AGTTTGAGGAGTGAAGGAAATATGC 59.350 40.000 0.00 0.00 0.00 3.14
2606 2768 4.156455 TGAGGAGTGAAGGAAATATGCC 57.844 45.455 0.00 0.00 0.00 4.40
2607 2769 3.117888 TGAGGAGTGAAGGAAATATGCCC 60.118 47.826 0.00 0.00 0.00 5.36
2608 2770 3.126453 AGGAGTGAAGGAAATATGCCCT 58.874 45.455 0.00 0.00 0.00 5.19
2609 2771 4.307259 AGGAGTGAAGGAAATATGCCCTA 58.693 43.478 0.00 0.00 31.36 3.53
2610 2772 4.349342 AGGAGTGAAGGAAATATGCCCTAG 59.651 45.833 0.00 0.00 31.36 3.02
2611 2773 4.348168 GGAGTGAAGGAAATATGCCCTAGA 59.652 45.833 0.00 0.00 31.36 2.43
2612 2774 5.512232 GGAGTGAAGGAAATATGCCCTAGAG 60.512 48.000 0.00 0.00 31.36 2.43
2613 2775 4.349342 AGTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
2707 2869 9.549078 TTAACAAGAAACATAGTACATGTGTGA 57.451 29.630 9.11 0.00 32.90 3.58
2708 2870 8.445275 AACAAGAAACATAGTACATGTGTGAA 57.555 30.769 9.11 0.00 32.90 3.18
2709 2871 8.621532 ACAAGAAACATAGTACATGTGTGAAT 57.378 30.769 9.11 0.00 32.90 2.57
2710 2872 9.719355 ACAAGAAACATAGTACATGTGTGAATA 57.281 29.630 9.11 0.00 32.90 1.75
2711 2873 9.973246 CAAGAAACATAGTACATGTGTGAATAC 57.027 33.333 9.11 0.00 32.90 1.89
2712 2874 9.719355 AAGAAACATAGTACATGTGTGAATACA 57.281 29.630 9.11 0.00 32.90 2.29
2713 2875 9.890629 AGAAACATAGTACATGTGTGAATACAT 57.109 29.630 9.11 0.00 41.77 2.29
2717 2879 9.967346 ACATAGTACATGTGTGAATACATAGAC 57.033 33.333 9.11 0.00 39.17 2.59
2718 2880 9.965824 CATAGTACATGTGTGAATACATAGACA 57.034 33.333 9.11 0.00 39.17 3.41
2721 2883 9.151471 AGTACATGTGTGAATACATAGACAAAC 57.849 33.333 9.11 0.00 39.17 2.93
2722 2884 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
2723 2885 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
2724 2886 7.661437 ACATGTGTGAATACATAGACAAACAGT 59.339 33.333 0.00 0.00 39.17 3.55
2725 2887 9.150348 CATGTGTGAATACATAGACAAACAGTA 57.850 33.333 0.00 0.00 39.17 2.74
2726 2888 9.890629 ATGTGTGAATACATAGACAAACAGTAT 57.109 29.630 0.00 0.00 39.40 2.12
2727 2889 9.150348 TGTGTGAATACATAGACAAACAGTATG 57.850 33.333 0.00 0.00 40.12 2.39
2728 2890 9.151471 GTGTGAATACATAGACAAACAGTATGT 57.849 33.333 0.00 0.00 46.47 2.29
2745 2907 6.904498 CAGTATGTCACTAGTATGCCTCTAC 58.096 44.000 0.00 0.00 34.98 2.59
2746 2908 6.712998 CAGTATGTCACTAGTATGCCTCTACT 59.287 42.308 0.00 0.00 34.98 2.57
2747 2909 7.229707 CAGTATGTCACTAGTATGCCTCTACTT 59.770 40.741 0.00 0.00 34.98 2.24
2748 2910 5.836821 TGTCACTAGTATGCCTCTACTTG 57.163 43.478 0.00 0.00 33.96 3.16
2749 2911 5.506708 TGTCACTAGTATGCCTCTACTTGA 58.493 41.667 0.00 0.18 33.96 3.02
2750 2912 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
2751 2913 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
2752 2914 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
2753 2915 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
2754 2916 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
2755 2917 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
2756 2918 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
2757 2919 3.087370 TGCCTCTACTTGACTAGCTCA 57.913 47.619 0.00 0.00 0.00 4.26
2758 2920 3.636679 TGCCTCTACTTGACTAGCTCAT 58.363 45.455 0.00 0.00 0.00 2.90
2759 2921 4.026744 TGCCTCTACTTGACTAGCTCATT 58.973 43.478 0.00 0.00 0.00 2.57
2760 2922 4.142071 TGCCTCTACTTGACTAGCTCATTG 60.142 45.833 0.00 0.00 0.00 2.82
2761 2923 4.367450 CCTCTACTTGACTAGCTCATTGC 58.633 47.826 0.00 0.00 43.29 3.56
2772 2934 2.328819 GCTCATTGCTCAGAGATGGT 57.671 50.000 0.00 0.00 38.95 3.55
2773 2935 2.641305 GCTCATTGCTCAGAGATGGTT 58.359 47.619 0.00 0.00 38.95 3.67
2774 2936 3.801698 GCTCATTGCTCAGAGATGGTTA 58.198 45.455 0.00 0.00 38.95 2.85
2775 2937 4.194640 GCTCATTGCTCAGAGATGGTTAA 58.805 43.478 0.00 0.00 38.95 2.01
2776 2938 4.272991 GCTCATTGCTCAGAGATGGTTAAG 59.727 45.833 0.00 0.00 38.95 1.85
2777 2939 5.426504 CTCATTGCTCAGAGATGGTTAAGT 58.573 41.667 0.00 0.00 33.74 2.24
2778 2940 5.809001 TCATTGCTCAGAGATGGTTAAGTT 58.191 37.500 0.00 0.00 0.00 2.66
2779 2941 6.240894 TCATTGCTCAGAGATGGTTAAGTTT 58.759 36.000 0.00 0.00 0.00 2.66
2780 2942 6.372659 TCATTGCTCAGAGATGGTTAAGTTTC 59.627 38.462 0.00 0.00 0.00 2.78
2781 2943 4.579869 TGCTCAGAGATGGTTAAGTTTCC 58.420 43.478 0.00 0.00 0.00 3.13
2782 2944 4.287067 TGCTCAGAGATGGTTAAGTTTCCT 59.713 41.667 0.00 0.00 0.00 3.36
2783 2945 5.483937 TGCTCAGAGATGGTTAAGTTTCCTA 59.516 40.000 0.00 0.00 0.00 2.94
2784 2946 6.013725 TGCTCAGAGATGGTTAAGTTTCCTAA 60.014 38.462 0.00 0.00 0.00 2.69
2785 2947 6.314152 GCTCAGAGATGGTTAAGTTTCCTAAC 59.686 42.308 0.00 0.00 34.36 2.34
2786 2948 6.708285 TCAGAGATGGTTAAGTTTCCTAACC 58.292 40.000 5.05 5.05 42.55 2.85
2793 2955 7.319052 TGGTTAAGTTTCCTAACCATAGACA 57.681 36.000 9.79 0.00 45.67 3.41
2794 2956 7.747690 TGGTTAAGTTTCCTAACCATAGACAA 58.252 34.615 9.79 0.00 45.67 3.18
2795 2957 8.219178 TGGTTAAGTTTCCTAACCATAGACAAA 58.781 33.333 9.79 0.00 45.67 2.83
2796 2958 8.727910 GGTTAAGTTTCCTAACCATAGACAAAG 58.272 37.037 6.84 0.00 41.99 2.77
2797 2959 9.281371 GTTAAGTTTCCTAACCATAGACAAAGT 57.719 33.333 0.00 0.00 34.71 2.66
2798 2960 7.745620 AAGTTTCCTAACCATAGACAAAGTG 57.254 36.000 0.00 0.00 34.71 3.16
2799 2961 6.838382 AGTTTCCTAACCATAGACAAAGTGT 58.162 36.000 0.00 0.00 34.71 3.55
2800 2962 7.287810 AGTTTCCTAACCATAGACAAAGTGTT 58.712 34.615 0.00 0.00 34.71 3.32
2801 2963 7.228706 AGTTTCCTAACCATAGACAAAGTGTTG 59.771 37.037 0.00 0.00 36.53 3.33
2833 2995 9.939802 TGATTAATGAGATCACATCATTAGGAG 57.060 33.333 6.08 0.00 45.52 3.69
2837 2999 8.850007 AATGAGATCACATCATTAGGAGAATG 57.150 34.615 6.08 0.00 43.75 2.67
2838 3000 7.607615 TGAGATCACATCATTAGGAGAATGA 57.392 36.000 2.66 2.66 40.50 2.57
2839 3001 8.203681 TGAGATCACATCATTAGGAGAATGAT 57.796 34.615 6.90 6.90 45.40 2.45
2849 3011 9.809395 ATCATTAGGAGAATGATGTGATTGAAT 57.191 29.630 11.08 0.00 43.52 2.57
2850 3012 9.636789 TCATTAGGAGAATGATGTGATTGAATT 57.363 29.630 0.00 0.00 32.21 2.17
2851 3013 9.678941 CATTAGGAGAATGATGTGATTGAATTG 57.321 33.333 0.00 0.00 0.00 2.32
2852 3014 9.636789 ATTAGGAGAATGATGTGATTGAATTGA 57.363 29.630 0.00 0.00 0.00 2.57
2853 3015 7.330900 AGGAGAATGATGTGATTGAATTGAC 57.669 36.000 0.00 0.00 0.00 3.18
2854 3016 6.320672 AGGAGAATGATGTGATTGAATTGACC 59.679 38.462 0.00 0.00 0.00 4.02
2855 3017 6.460676 GGAGAATGATGTGATTGAATTGACCC 60.461 42.308 0.00 0.00 0.00 4.46
2856 3018 5.953548 AGAATGATGTGATTGAATTGACCCA 59.046 36.000 0.00 0.00 0.00 4.51
2857 3019 6.610020 AGAATGATGTGATTGAATTGACCCAT 59.390 34.615 0.00 0.00 0.00 4.00
2858 3020 6.801718 ATGATGTGATTGAATTGACCCATT 57.198 33.333 0.00 0.00 0.00 3.16
2859 3021 6.211587 TGATGTGATTGAATTGACCCATTC 57.788 37.500 0.00 0.00 0.00 2.67
2860 3022 5.127519 TGATGTGATTGAATTGACCCATTCC 59.872 40.000 0.00 0.00 0.00 3.01
2861 3023 3.443329 TGTGATTGAATTGACCCATTCCG 59.557 43.478 0.00 0.00 0.00 4.30
2862 3024 3.443681 GTGATTGAATTGACCCATTCCGT 59.556 43.478 0.00 0.00 0.00 4.69
2863 3025 4.082245 GTGATTGAATTGACCCATTCCGTT 60.082 41.667 0.00 0.00 0.00 4.44
2864 3026 5.124776 GTGATTGAATTGACCCATTCCGTTA 59.875 40.000 0.00 0.00 0.00 3.18
2865 3027 5.890985 TGATTGAATTGACCCATTCCGTTAT 59.109 36.000 0.00 0.00 0.00 1.89
2866 3028 5.828299 TTGAATTGACCCATTCCGTTATC 57.172 39.130 0.00 0.00 0.00 1.75
2867 3029 5.110814 TGAATTGACCCATTCCGTTATCT 57.889 39.130 0.00 0.00 0.00 1.98
2868 3030 5.505780 TGAATTGACCCATTCCGTTATCTT 58.494 37.500 0.00 0.00 0.00 2.40
2869 3031 6.654959 TGAATTGACCCATTCCGTTATCTTA 58.345 36.000 0.00 0.00 0.00 2.10
2870 3032 6.765989 TGAATTGACCCATTCCGTTATCTTAG 59.234 38.462 0.00 0.00 0.00 2.18
2871 3033 4.067972 TGACCCATTCCGTTATCTTAGC 57.932 45.455 0.00 0.00 0.00 3.09
2872 3034 3.452990 TGACCCATTCCGTTATCTTAGCA 59.547 43.478 0.00 0.00 0.00 3.49
2873 3035 3.805207 ACCCATTCCGTTATCTTAGCAC 58.195 45.455 0.00 0.00 0.00 4.40
2874 3036 3.199071 ACCCATTCCGTTATCTTAGCACA 59.801 43.478 0.00 0.00 0.00 4.57
2875 3037 3.560068 CCCATTCCGTTATCTTAGCACAC 59.440 47.826 0.00 0.00 0.00 3.82
2876 3038 3.245284 CCATTCCGTTATCTTAGCACACG 59.755 47.826 0.00 0.00 0.00 4.49
2877 3039 3.853831 TTCCGTTATCTTAGCACACGA 57.146 42.857 0.00 0.00 32.51 4.35
2878 3040 4.380841 TTCCGTTATCTTAGCACACGAT 57.619 40.909 0.00 0.00 32.51 3.73
2879 3041 3.961182 TCCGTTATCTTAGCACACGATC 58.039 45.455 0.00 0.00 32.51 3.69
2880 3042 2.719556 CCGTTATCTTAGCACACGATCG 59.280 50.000 14.88 14.88 32.51 3.69
2881 3043 3.360533 CGTTATCTTAGCACACGATCGT 58.639 45.455 16.60 16.60 32.51 3.73
2882 3044 3.789756 CGTTATCTTAGCACACGATCGTT 59.210 43.478 20.14 6.72 32.51 3.85
2883 3045 4.264614 CGTTATCTTAGCACACGATCGTTT 59.735 41.667 20.14 10.13 32.51 3.60
2884 3046 5.453266 CGTTATCTTAGCACACGATCGTTTA 59.547 40.000 20.14 6.25 32.51 2.01
2885 3047 6.344002 CGTTATCTTAGCACACGATCGTTTAG 60.344 42.308 20.14 10.44 32.51 1.85
2886 3048 4.430137 TCTTAGCACACGATCGTTTAGT 57.570 40.909 20.14 11.17 0.00 2.24
2887 3049 5.550232 TCTTAGCACACGATCGTTTAGTA 57.450 39.130 20.14 5.55 0.00 1.82
2888 3050 6.127810 TCTTAGCACACGATCGTTTAGTAT 57.872 37.500 20.14 8.43 0.00 2.12
2889 3051 6.558009 TCTTAGCACACGATCGTTTAGTATT 58.442 36.000 20.14 7.77 0.00 1.89
2890 3052 6.690098 TCTTAGCACACGATCGTTTAGTATTC 59.310 38.462 20.14 6.60 0.00 1.75
2891 3053 4.995124 AGCACACGATCGTTTAGTATTCT 58.005 39.130 20.14 8.63 0.00 2.40
2892 3054 4.798907 AGCACACGATCGTTTAGTATTCTG 59.201 41.667 20.14 5.73 0.00 3.02
2893 3055 4.548346 GCACACGATCGTTTAGTATTCTGC 60.548 45.833 20.14 9.16 0.00 4.26
2894 3056 4.798907 CACACGATCGTTTAGTATTCTGCT 59.201 41.667 20.14 0.00 0.00 4.24
2895 3057 5.969435 CACACGATCGTTTAGTATTCTGCTA 59.031 40.000 20.14 0.00 0.00 3.49
2896 3058 6.637254 CACACGATCGTTTAGTATTCTGCTAT 59.363 38.462 20.14 0.00 0.00 2.97
2897 3059 7.167635 CACACGATCGTTTAGTATTCTGCTATT 59.832 37.037 20.14 0.00 0.00 1.73
2898 3060 7.167635 ACACGATCGTTTAGTATTCTGCTATTG 59.832 37.037 20.14 3.02 0.00 1.90
2899 3061 6.144080 ACGATCGTTTAGTATTCTGCTATTGC 59.856 38.462 16.60 0.00 40.20 3.56
2900 3062 6.363626 CGATCGTTTAGTATTCTGCTATTGCT 59.636 38.462 7.03 0.00 40.48 3.91
2901 3063 7.096023 CGATCGTTTAGTATTCTGCTATTGCTT 60.096 37.037 7.03 0.00 40.48 3.91
2902 3064 7.843490 TCGTTTAGTATTCTGCTATTGCTTT 57.157 32.000 0.00 0.00 40.48 3.51
2903 3065 7.906160 TCGTTTAGTATTCTGCTATTGCTTTC 58.094 34.615 0.00 0.00 40.48 2.62
2904 3066 7.764443 TCGTTTAGTATTCTGCTATTGCTTTCT 59.236 33.333 0.00 0.00 40.48 2.52
2905 3067 8.391106 CGTTTAGTATTCTGCTATTGCTTTCTT 58.609 33.333 0.00 0.00 40.48 2.52
2906 3068 9.709600 GTTTAGTATTCTGCTATTGCTTTCTTC 57.290 33.333 0.00 0.00 40.48 2.87
2907 3069 9.448438 TTTAGTATTCTGCTATTGCTTTCTTCA 57.552 29.630 0.00 0.00 40.48 3.02
2908 3070 9.618890 TTAGTATTCTGCTATTGCTTTCTTCAT 57.381 29.630 0.00 0.00 40.48 2.57
2909 3071 7.928103 AGTATTCTGCTATTGCTTTCTTCATG 58.072 34.615 0.00 0.00 40.48 3.07
2910 3072 7.772292 AGTATTCTGCTATTGCTTTCTTCATGA 59.228 33.333 0.00 0.00 40.48 3.07
2911 3073 6.432607 TTCTGCTATTGCTTTCTTCATGAG 57.567 37.500 0.00 0.00 40.48 2.90
2912 3074 5.494724 TCTGCTATTGCTTTCTTCATGAGT 58.505 37.500 0.00 0.00 40.48 3.41
2913 3075 5.942236 TCTGCTATTGCTTTCTTCATGAGTT 59.058 36.000 0.00 0.00 40.48 3.01
2914 3076 7.105588 TCTGCTATTGCTTTCTTCATGAGTTA 58.894 34.615 0.00 0.00 40.48 2.24
2915 3077 7.772292 TCTGCTATTGCTTTCTTCATGAGTTAT 59.228 33.333 0.00 0.00 40.48 1.89
2916 3078 8.962884 TGCTATTGCTTTCTTCATGAGTTATA 57.037 30.769 0.00 0.00 40.48 0.98
2917 3079 8.830580 TGCTATTGCTTTCTTCATGAGTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
2918 3080 8.830580 GCTATTGCTTTCTTCATGAGTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
2921 3083 8.565896 TTGCTTTCTTCATGAGTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
2922 3084 8.565896 TGCTTTCTTCATGAGTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
2923 3085 8.668353 TGCTTTCTTCATGAGTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
2924 3086 8.125448 GCTTTCTTCATGAGTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
2925 3087 9.388506 CTTTCTTCATGAGTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
2928 3090 9.987272 TCTTCATGAGTTATACATGTTCCTATG 57.013 33.333 2.30 1.10 43.56 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.567615 AGCGGAGGTCAAAATCTACTGT 59.432 45.455 0.00 0.00 0.00 3.55
206 207 7.790782 ATTGGTTACAATGGTTTCATAAGGT 57.209 32.000 0.00 0.00 45.27 3.50
249 253 5.163540 CGGCATCAACTAGGTAGTACTTTCT 60.164 44.000 0.00 1.63 34.99 2.52
303 307 2.335316 TACCTCACGCCACAAAAAGT 57.665 45.000 0.00 0.00 0.00 2.66
530 534 4.842574 TGAATTCATCGATCCCTTGTGAA 58.157 39.130 3.38 0.00 33.82 3.18
557 561 1.745489 GGTCCATGTCACTTCCGGC 60.745 63.158 0.00 0.00 0.00 6.13
597 601 5.394115 CCCTATTGTCACTTAATTGTTGCCC 60.394 44.000 0.00 0.00 0.00 5.36
653 658 5.450818 AGTTGCCTATCTTCCCACATTTA 57.549 39.130 0.00 0.00 0.00 1.40
733 738 4.500127 CAGCCATCAAATGAATGCAAAGA 58.500 39.130 0.00 0.00 0.00 2.52
995 1073 7.094975 CGGTAACTTCAACATTGTCCATTTCTA 60.095 37.037 0.00 0.00 0.00 2.10
1283 1374 6.043590 TGTGCAAGTATCTTCATCCCATAGAT 59.956 38.462 0.00 0.00 34.66 1.98
1435 1532 4.949856 GGTTATTCAAGAAGGGAGCATCAA 59.050 41.667 0.00 0.00 36.25 2.57
1483 1581 2.101582 CCGGTTGTTCCAAAAATGGTCA 59.898 45.455 0.00 0.00 35.57 4.02
1798 1898 0.807496 GGCAAGGTGCTCTTCATCAC 59.193 55.000 0.00 0.00 44.28 3.06
1934 2034 6.560253 AGTTCACATTCTTGACAACCATAC 57.440 37.500 0.00 0.00 0.00 2.39
1948 2057 4.099881 AGCCAAACATGTCAAGTTCACATT 59.900 37.500 0.00 0.00 31.83 2.71
2173 2315 3.853831 TGGCAATCATGTAGCAAGTTG 57.146 42.857 0.00 0.00 0.00 3.16
2277 2439 8.394877 GGAAGAACAAAAATTCAAATTTTCGGT 58.605 29.630 12.48 11.18 45.16 4.69
2303 2465 6.815142 GGTTTGGAAGAATGGAATGAAGAATG 59.185 38.462 0.00 0.00 0.00 2.67
2307 2469 5.726980 TGGTTTGGAAGAATGGAATGAAG 57.273 39.130 0.00 0.00 0.00 3.02
2473 2635 9.709495 GCAAGATAAGATCAAGAACTCTCATAT 57.291 33.333 0.00 0.00 0.00 1.78
2474 2636 8.699130 TGCAAGATAAGATCAAGAACTCTCATA 58.301 33.333 0.00 0.00 0.00 2.15
2475 2637 7.563020 TGCAAGATAAGATCAAGAACTCTCAT 58.437 34.615 0.00 0.00 0.00 2.90
2476 2638 6.939622 TGCAAGATAAGATCAAGAACTCTCA 58.060 36.000 0.00 0.00 0.00 3.27
2477 2639 7.548780 ACTTGCAAGATAAGATCAAGAACTCTC 59.451 37.037 32.50 0.00 37.96 3.20
2478 2640 7.393216 ACTTGCAAGATAAGATCAAGAACTCT 58.607 34.615 32.50 0.33 37.96 3.24
2479 2641 7.548780 AGACTTGCAAGATAAGATCAAGAACTC 59.451 37.037 32.50 13.13 37.96 3.01
2480 2642 7.393216 AGACTTGCAAGATAAGATCAAGAACT 58.607 34.615 32.50 4.02 37.96 3.01
2481 2643 7.608308 AGACTTGCAAGATAAGATCAAGAAC 57.392 36.000 32.50 6.03 37.96 3.01
2484 2646 9.979578 ACTATAGACTTGCAAGATAAGATCAAG 57.020 33.333 32.50 16.96 39.79 3.02
2485 2647 9.973450 GACTATAGACTTGCAAGATAAGATCAA 57.027 33.333 32.50 7.54 0.00 2.57
2486 2648 9.136323 TGACTATAGACTTGCAAGATAAGATCA 57.864 33.333 32.50 21.20 0.00 2.92
2487 2649 9.405587 GTGACTATAGACTTGCAAGATAAGATC 57.594 37.037 32.50 17.72 0.00 2.75
2488 2650 8.364142 GGTGACTATAGACTTGCAAGATAAGAT 58.636 37.037 32.50 18.12 0.00 2.40
2489 2651 7.561722 AGGTGACTATAGACTTGCAAGATAAGA 59.438 37.037 32.50 12.63 40.61 2.10
2490 2652 7.721402 AGGTGACTATAGACTTGCAAGATAAG 58.279 38.462 32.50 21.01 40.61 1.73
2491 2653 7.661536 AGGTGACTATAGACTTGCAAGATAA 57.338 36.000 32.50 16.33 40.61 1.75
2509 2671 9.507329 AATGGATCATAACACATAATAGGTGAC 57.493 33.333 12.25 0.00 39.53 3.67
2515 2677 9.747898 GGGGTTAATGGATCATAACACATAATA 57.252 33.333 15.26 0.00 0.00 0.98
2516 2678 7.393234 CGGGGTTAATGGATCATAACACATAAT 59.607 37.037 15.26 0.00 0.00 1.28
2517 2679 6.712998 CGGGGTTAATGGATCATAACACATAA 59.287 38.462 15.26 0.00 0.00 1.90
2518 2680 6.043358 TCGGGGTTAATGGATCATAACACATA 59.957 38.462 15.26 4.49 0.00 2.29
2519 2681 5.070001 CGGGGTTAATGGATCATAACACAT 58.930 41.667 15.26 0.00 0.00 3.21
2520 2682 4.164413 TCGGGGTTAATGGATCATAACACA 59.836 41.667 15.26 0.00 0.00 3.72
2521 2683 4.710324 TCGGGGTTAATGGATCATAACAC 58.290 43.478 13.78 11.18 0.00 3.32
2522 2684 5.104277 ACTTCGGGGTTAATGGATCATAACA 60.104 40.000 13.78 0.00 0.00 2.41
2523 2685 5.238650 CACTTCGGGGTTAATGGATCATAAC 59.761 44.000 0.00 1.14 0.00 1.89
2524 2686 5.131308 TCACTTCGGGGTTAATGGATCATAA 59.869 40.000 0.00 0.00 0.00 1.90
2525 2687 4.656575 TCACTTCGGGGTTAATGGATCATA 59.343 41.667 0.00 0.00 0.00 2.15
2526 2688 3.458118 TCACTTCGGGGTTAATGGATCAT 59.542 43.478 0.00 0.00 0.00 2.45
2527 2689 2.841266 TCACTTCGGGGTTAATGGATCA 59.159 45.455 0.00 0.00 0.00 2.92
2528 2690 3.203716 GTCACTTCGGGGTTAATGGATC 58.796 50.000 0.00 0.00 0.00 3.36
2529 2691 2.574369 TGTCACTTCGGGGTTAATGGAT 59.426 45.455 0.00 0.00 0.00 3.41
2530 2692 1.979308 TGTCACTTCGGGGTTAATGGA 59.021 47.619 0.00 0.00 0.00 3.41
2531 2693 2.483014 TGTCACTTCGGGGTTAATGG 57.517 50.000 0.00 0.00 0.00 3.16
2532 2694 6.511121 CGATTATTGTCACTTCGGGGTTAATG 60.511 42.308 0.00 0.00 0.00 1.90
2533 2695 5.526111 CGATTATTGTCACTTCGGGGTTAAT 59.474 40.000 0.00 0.00 0.00 1.40
2534 2696 4.871557 CGATTATTGTCACTTCGGGGTTAA 59.128 41.667 0.00 0.00 0.00 2.01
2535 2697 4.435425 CGATTATTGTCACTTCGGGGTTA 58.565 43.478 0.00 0.00 0.00 2.85
2536 2698 3.267483 CGATTATTGTCACTTCGGGGTT 58.733 45.455 0.00 0.00 0.00 4.11
2537 2699 2.419574 CCGATTATTGTCACTTCGGGGT 60.420 50.000 1.85 0.00 44.24 4.95
2538 2700 2.210116 CCGATTATTGTCACTTCGGGG 58.790 52.381 1.85 0.00 44.24 5.73
2540 2702 3.173668 TCCCGATTATTGTCACTTCGG 57.826 47.619 2.80 2.80 46.79 4.30
2541 2703 5.529791 AGTATCCCGATTATTGTCACTTCG 58.470 41.667 0.00 0.00 0.00 3.79
2542 2704 7.384387 GGTAAGTATCCCGATTATTGTCACTTC 59.616 40.741 0.00 0.00 0.00 3.01
2543 2705 7.215085 GGTAAGTATCCCGATTATTGTCACTT 58.785 38.462 0.00 0.00 0.00 3.16
2544 2706 6.756221 GGTAAGTATCCCGATTATTGTCACT 58.244 40.000 0.00 0.00 0.00 3.41
2556 2718 1.958579 TCATCACCGGTAAGTATCCCG 59.041 52.381 6.87 0.00 43.82 5.14
2557 2719 2.036862 GGTCATCACCGGTAAGTATCCC 59.963 54.545 6.87 0.00 31.06 3.85
2558 2720 3.382048 GGTCATCACCGGTAAGTATCC 57.618 52.381 6.87 2.18 31.06 2.59
2569 2731 2.232941 TCCTCAAACTACGGTCATCACC 59.767 50.000 0.00 0.00 39.69 4.02
2570 2732 3.056749 ACTCCTCAAACTACGGTCATCAC 60.057 47.826 0.00 0.00 0.00 3.06
2571 2733 3.056821 CACTCCTCAAACTACGGTCATCA 60.057 47.826 0.00 0.00 0.00 3.07
2572 2734 3.192844 TCACTCCTCAAACTACGGTCATC 59.807 47.826 0.00 0.00 0.00 2.92
2573 2735 3.162666 TCACTCCTCAAACTACGGTCAT 58.837 45.455 0.00 0.00 0.00 3.06
2574 2736 2.589720 TCACTCCTCAAACTACGGTCA 58.410 47.619 0.00 0.00 0.00 4.02
2575 2737 3.576648 CTTCACTCCTCAAACTACGGTC 58.423 50.000 0.00 0.00 0.00 4.79
2576 2738 2.299297 CCTTCACTCCTCAAACTACGGT 59.701 50.000 0.00 0.00 0.00 4.83
2577 2739 2.561419 TCCTTCACTCCTCAAACTACGG 59.439 50.000 0.00 0.00 0.00 4.02
2578 2740 3.936372 TCCTTCACTCCTCAAACTACG 57.064 47.619 0.00 0.00 0.00 3.51
2579 2741 7.201652 GCATATTTCCTTCACTCCTCAAACTAC 60.202 40.741 0.00 0.00 0.00 2.73
2580 2742 6.823689 GCATATTTCCTTCACTCCTCAAACTA 59.176 38.462 0.00 0.00 0.00 2.24
2581 2743 5.649831 GCATATTTCCTTCACTCCTCAAACT 59.350 40.000 0.00 0.00 0.00 2.66
2582 2744 5.163612 GGCATATTTCCTTCACTCCTCAAAC 60.164 44.000 0.00 0.00 0.00 2.93
2583 2745 4.949856 GGCATATTTCCTTCACTCCTCAAA 59.050 41.667 0.00 0.00 0.00 2.69
2584 2746 4.526970 GGCATATTTCCTTCACTCCTCAA 58.473 43.478 0.00 0.00 0.00 3.02
2585 2747 3.117888 GGGCATATTTCCTTCACTCCTCA 60.118 47.826 0.00 0.00 0.00 3.86
2586 2748 3.137360 AGGGCATATTTCCTTCACTCCTC 59.863 47.826 0.00 0.00 0.00 3.71
2587 2749 3.126453 AGGGCATATTTCCTTCACTCCT 58.874 45.455 0.00 0.00 0.00 3.69
2588 2750 3.584733 AGGGCATATTTCCTTCACTCC 57.415 47.619 0.00 0.00 0.00 3.85
2589 2751 5.512232 CCTCTAGGGCATATTTCCTTCACTC 60.512 48.000 0.00 0.00 34.75 3.51
2590 2752 4.349342 CCTCTAGGGCATATTTCCTTCACT 59.651 45.833 0.00 0.00 34.75 3.41
2591 2753 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
2592 2754 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
2604 2766 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
2681 2843 9.549078 TCACACATGTACTATGTTTCTTGTTAA 57.451 29.630 0.00 0.00 0.00 2.01
2682 2844 9.549078 TTCACACATGTACTATGTTTCTTGTTA 57.451 29.630 0.00 0.00 0.00 2.41
2683 2845 8.445275 TTCACACATGTACTATGTTTCTTGTT 57.555 30.769 0.00 0.00 0.00 2.83
2684 2846 8.621532 ATTCACACATGTACTATGTTTCTTGT 57.378 30.769 0.00 2.23 0.00 3.16
2685 2847 9.973246 GTATTCACACATGTACTATGTTTCTTG 57.027 33.333 0.00 4.91 0.00 3.02
2686 2848 9.719355 TGTATTCACACATGTACTATGTTTCTT 57.281 29.630 0.00 0.00 0.00 2.52
2687 2849 9.890629 ATGTATTCACACATGTACTATGTTTCT 57.109 29.630 0.00 0.00 37.74 2.52
2691 2853 9.967346 GTCTATGTATTCACACATGTACTATGT 57.033 33.333 0.00 5.45 39.46 2.29
2692 2854 9.965824 TGTCTATGTATTCACACATGTACTATG 57.034 33.333 0.00 0.00 39.46 2.23
2695 2857 9.151471 GTTTGTCTATGTATTCACACATGTACT 57.849 33.333 0.00 0.00 39.46 2.73
2696 2858 8.931775 TGTTTGTCTATGTATTCACACATGTAC 58.068 33.333 0.00 0.00 39.46 2.90
2697 2859 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
2698 2860 7.661437 ACTGTTTGTCTATGTATTCACACATGT 59.339 33.333 0.00 0.00 39.46 3.21
2699 2861 8.032952 ACTGTTTGTCTATGTATTCACACATG 57.967 34.615 0.00 0.00 39.46 3.21
2700 2862 9.890629 ATACTGTTTGTCTATGTATTCACACAT 57.109 29.630 0.00 0.00 41.88 3.21
2701 2863 9.150348 CATACTGTTTGTCTATGTATTCACACA 57.850 33.333 0.00 0.00 37.54 3.72
2702 2864 9.151471 ACATACTGTTTGTCTATGTATTCACAC 57.849 33.333 0.00 0.00 37.54 3.82
2703 2865 9.366216 GACATACTGTTTGTCTATGTATTCACA 57.634 33.333 19.75 0.00 40.26 3.58
2704 2866 9.366216 TGACATACTGTTTGTCTATGTATTCAC 57.634 33.333 24.76 3.24 43.12 3.18
2705 2867 9.366216 GTGACATACTGTTTGTCTATGTATTCA 57.634 33.333 24.76 6.33 43.12 2.57
2706 2868 9.587772 AGTGACATACTGTTTGTCTATGTATTC 57.412 33.333 24.76 10.29 43.12 1.75
2709 2871 9.239551 ACTAGTGACATACTGTTTGTCTATGTA 57.760 33.333 24.76 13.53 43.12 2.29
2710 2872 8.123639 ACTAGTGACATACTGTTTGTCTATGT 57.876 34.615 24.76 17.10 43.12 2.29
2713 2875 8.188799 GCATACTAGTGACATACTGTTTGTCTA 58.811 37.037 24.76 13.36 43.12 2.59
2714 2876 7.036220 GCATACTAGTGACATACTGTTTGTCT 58.964 38.462 24.76 13.08 43.12 3.41
2715 2877 6.255887 GGCATACTAGTGACATACTGTTTGTC 59.744 42.308 20.08 20.08 43.04 3.18
2716 2878 6.070767 AGGCATACTAGTGACATACTGTTTGT 60.071 38.462 5.39 3.49 40.65 2.83
2717 2879 6.341316 AGGCATACTAGTGACATACTGTTTG 58.659 40.000 5.39 0.00 40.65 2.93
2718 2880 6.381420 AGAGGCATACTAGTGACATACTGTTT 59.619 38.462 5.39 0.00 40.65 2.83
2719 2881 5.894393 AGAGGCATACTAGTGACATACTGTT 59.106 40.000 5.39 0.00 40.65 3.16
2720 2882 5.450453 AGAGGCATACTAGTGACATACTGT 58.550 41.667 5.39 0.00 40.65 3.55
2721 2883 6.712998 AGTAGAGGCATACTAGTGACATACTG 59.287 42.308 5.39 0.00 40.65 2.74
2722 2884 6.843752 AGTAGAGGCATACTAGTGACATACT 58.156 40.000 5.39 2.39 43.56 2.12
2723 2885 7.228906 TCAAGTAGAGGCATACTAGTGACATAC 59.771 40.741 5.39 0.10 34.90 2.39
2724 2886 7.228906 GTCAAGTAGAGGCATACTAGTGACATA 59.771 40.741 19.41 0.00 40.28 2.29
2725 2887 6.039941 GTCAAGTAGAGGCATACTAGTGACAT 59.960 42.308 19.41 0.00 40.28 3.06
2726 2888 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
2727 2889 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
2728 2890 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
2729 2891 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
2730 2892 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
2731 2893 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
2732 2894 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
2733 2895 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
2734 2896 4.580995 TGAGCTAGTCAAGTAGAGGCATAC 59.419 45.833 0.00 0.00 29.64 2.39
2735 2897 4.793201 TGAGCTAGTCAAGTAGAGGCATA 58.207 43.478 0.00 0.00 29.64 3.14
2736 2898 3.636679 TGAGCTAGTCAAGTAGAGGCAT 58.363 45.455 0.00 0.00 29.64 4.40
2737 2899 3.087370 TGAGCTAGTCAAGTAGAGGCA 57.913 47.619 0.00 0.00 29.64 4.75
2738 2900 4.367450 CAATGAGCTAGTCAAGTAGAGGC 58.633 47.826 0.00 0.00 39.19 4.70
2739 2901 4.367450 GCAATGAGCTAGTCAAGTAGAGG 58.633 47.826 0.00 0.00 39.19 3.69
2753 2915 2.328819 ACCATCTCTGAGCAATGAGC 57.671 50.000 7.68 0.00 46.19 4.26
2754 2916 5.426504 ACTTAACCATCTCTGAGCAATGAG 58.573 41.667 7.68 1.39 0.00 2.90
2755 2917 5.426689 ACTTAACCATCTCTGAGCAATGA 57.573 39.130 7.68 0.00 0.00 2.57
2756 2918 6.404074 GGAAACTTAACCATCTCTGAGCAATG 60.404 42.308 0.00 0.00 0.00 2.82
2757 2919 5.649831 GGAAACTTAACCATCTCTGAGCAAT 59.350 40.000 0.00 0.00 0.00 3.56
2758 2920 5.003804 GGAAACTTAACCATCTCTGAGCAA 58.996 41.667 0.00 0.00 0.00 3.91
2759 2921 4.287067 AGGAAACTTAACCATCTCTGAGCA 59.713 41.667 0.00 0.00 37.44 4.26
2760 2922 4.837972 AGGAAACTTAACCATCTCTGAGC 58.162 43.478 0.00 0.00 37.44 4.26
2761 2923 6.819146 GGTTAGGAAACTTAACCATCTCTGAG 59.181 42.308 14.78 0.00 43.67 3.35
2762 2924 6.271391 TGGTTAGGAAACTTAACCATCTCTGA 59.729 38.462 17.28 0.00 43.20 3.27
2763 2925 6.472887 TGGTTAGGAAACTTAACCATCTCTG 58.527 40.000 17.28 0.00 43.20 3.35
2764 2926 6.697641 TGGTTAGGAAACTTAACCATCTCT 57.302 37.500 17.28 0.00 43.20 3.10
2770 2932 8.625786 TTTGTCTATGGTTAGGAAACTTAACC 57.374 34.615 13.40 13.40 43.67 2.85
2771 2933 9.281371 ACTTTGTCTATGGTTAGGAAACTTAAC 57.719 33.333 0.00 0.00 43.67 2.01
2772 2934 9.280174 CACTTTGTCTATGGTTAGGAAACTTAA 57.720 33.333 0.00 0.00 43.67 1.85
2773 2935 8.434392 ACACTTTGTCTATGGTTAGGAAACTTA 58.566 33.333 0.00 0.00 43.67 2.24
2774 2936 7.287810 ACACTTTGTCTATGGTTAGGAAACTT 58.712 34.615 0.00 0.00 43.67 2.66
2776 2938 7.012989 ACAACACTTTGTCTATGGTTAGGAAAC 59.987 37.037 0.00 0.00 42.67 2.78
2777 2939 7.057894 ACAACACTTTGTCTATGGTTAGGAAA 58.942 34.615 0.00 0.00 42.67 3.13
2778 2940 6.597562 ACAACACTTTGTCTATGGTTAGGAA 58.402 36.000 0.00 0.00 42.67 3.36
2779 2941 6.182507 ACAACACTTTGTCTATGGTTAGGA 57.817 37.500 0.00 0.00 42.67 2.94
2807 2969 9.939802 CTCCTAATGATGTGATCTCATTAATCA 57.060 33.333 11.38 6.50 42.19 2.57
2811 2973 9.939802 CATTCTCCTAATGATGTGATCTCATTA 57.060 33.333 11.38 12.15 42.03 1.90
2812 2974 8.657712 TCATTCTCCTAATGATGTGATCTCATT 58.342 33.333 11.38 11.70 43.75 2.57
2813 2975 8.203681 TCATTCTCCTAATGATGTGATCTCAT 57.796 34.615 9.96 9.96 34.86 2.90
2814 2976 7.607615 TCATTCTCCTAATGATGTGATCTCA 57.392 36.000 0.00 0.00 32.21 3.27
2823 2985 9.809395 ATTCAATCACATCATTCTCCTAATGAT 57.191 29.630 7.28 7.28 45.40 2.45
2824 2986 9.636789 AATTCAATCACATCATTCTCCTAATGA 57.363 29.630 3.13 3.13 40.50 2.57
2825 2987 9.678941 CAATTCAATCACATCATTCTCCTAATG 57.321 33.333 0.00 0.00 0.00 1.90
2826 2988 9.636789 TCAATTCAATCACATCATTCTCCTAAT 57.363 29.630 0.00 0.00 0.00 1.73
2827 2989 8.896744 GTCAATTCAATCACATCATTCTCCTAA 58.103 33.333 0.00 0.00 0.00 2.69
2828 2990 7.500227 GGTCAATTCAATCACATCATTCTCCTA 59.500 37.037 0.00 0.00 0.00 2.94
2829 2991 6.320672 GGTCAATTCAATCACATCATTCTCCT 59.679 38.462 0.00 0.00 0.00 3.69
2830 2992 6.460676 GGGTCAATTCAATCACATCATTCTCC 60.461 42.308 0.00 0.00 0.00 3.71
2831 2993 6.095860 TGGGTCAATTCAATCACATCATTCTC 59.904 38.462 0.00 0.00 0.00 2.87
2832 2994 5.953548 TGGGTCAATTCAATCACATCATTCT 59.046 36.000 0.00 0.00 0.00 2.40
2833 2995 6.211587 TGGGTCAATTCAATCACATCATTC 57.788 37.500 0.00 0.00 0.00 2.67
2834 2996 6.801718 ATGGGTCAATTCAATCACATCATT 57.198 33.333 0.00 0.00 0.00 2.57
2835 2997 6.183360 GGAATGGGTCAATTCAATCACATCAT 60.183 38.462 1.10 0.00 38.14 2.45
2836 2998 5.127519 GGAATGGGTCAATTCAATCACATCA 59.872 40.000 1.10 0.00 38.14 3.07
2837 2999 5.594926 GGAATGGGTCAATTCAATCACATC 58.405 41.667 1.10 0.00 38.14 3.06
2838 3000 4.098349 CGGAATGGGTCAATTCAATCACAT 59.902 41.667 1.10 0.00 38.14 3.21
2839 3001 3.443329 CGGAATGGGTCAATTCAATCACA 59.557 43.478 1.10 0.00 38.14 3.58
2840 3002 3.443681 ACGGAATGGGTCAATTCAATCAC 59.556 43.478 1.10 0.00 38.14 3.06
2841 3003 3.696045 ACGGAATGGGTCAATTCAATCA 58.304 40.909 1.10 0.00 38.14 2.57
2842 3004 4.718940 AACGGAATGGGTCAATTCAATC 57.281 40.909 1.10 0.00 38.14 2.67
2843 3005 6.129179 AGATAACGGAATGGGTCAATTCAAT 58.871 36.000 1.10 0.00 38.14 2.57
2844 3006 5.505780 AGATAACGGAATGGGTCAATTCAA 58.494 37.500 1.10 0.00 38.14 2.69
2845 3007 5.110814 AGATAACGGAATGGGTCAATTCA 57.889 39.130 1.10 0.00 38.14 2.57
2846 3008 6.293462 GCTAAGATAACGGAATGGGTCAATTC 60.293 42.308 0.00 0.00 36.08 2.17
2847 3009 5.531287 GCTAAGATAACGGAATGGGTCAATT 59.469 40.000 0.00 0.00 0.00 2.32
2848 3010 5.063880 GCTAAGATAACGGAATGGGTCAAT 58.936 41.667 0.00 0.00 0.00 2.57
2849 3011 4.080807 TGCTAAGATAACGGAATGGGTCAA 60.081 41.667 0.00 0.00 0.00 3.18
2850 3012 3.452990 TGCTAAGATAACGGAATGGGTCA 59.547 43.478 0.00 0.00 0.00 4.02
2851 3013 3.808174 GTGCTAAGATAACGGAATGGGTC 59.192 47.826 0.00 0.00 0.00 4.46
2852 3014 3.199071 TGTGCTAAGATAACGGAATGGGT 59.801 43.478 0.00 0.00 0.00 4.51
2853 3015 3.560068 GTGTGCTAAGATAACGGAATGGG 59.440 47.826 0.00 0.00 0.00 4.00
2854 3016 3.245284 CGTGTGCTAAGATAACGGAATGG 59.755 47.826 0.00 0.00 0.00 3.16
2855 3017 4.109766 TCGTGTGCTAAGATAACGGAATG 58.890 43.478 0.00 0.00 35.08 2.67
2856 3018 4.380841 TCGTGTGCTAAGATAACGGAAT 57.619 40.909 0.00 0.00 35.08 3.01
2857 3019 3.853831 TCGTGTGCTAAGATAACGGAA 57.146 42.857 0.00 0.00 35.08 4.30
2858 3020 3.547413 CGATCGTGTGCTAAGATAACGGA 60.547 47.826 7.03 0.00 35.08 4.69
2859 3021 2.719556 CGATCGTGTGCTAAGATAACGG 59.280 50.000 7.03 0.00 35.08 4.44
2860 3022 3.360533 ACGATCGTGTGCTAAGATAACG 58.639 45.455 22.06 0.00 35.64 3.18
2861 3023 5.697848 AAACGATCGTGTGCTAAGATAAC 57.302 39.130 23.51 0.00 0.00 1.89
2862 3024 6.558009 ACTAAACGATCGTGTGCTAAGATAA 58.442 36.000 23.51 0.00 0.00 1.75
2863 3025 6.127810 ACTAAACGATCGTGTGCTAAGATA 57.872 37.500 23.51 0.00 0.00 1.98
2864 3026 4.995124 ACTAAACGATCGTGTGCTAAGAT 58.005 39.130 23.51 0.00 0.00 2.40
2865 3027 4.430137 ACTAAACGATCGTGTGCTAAGA 57.570 40.909 23.51 0.00 0.00 2.10
2866 3028 6.691818 AGAATACTAAACGATCGTGTGCTAAG 59.308 38.462 23.51 12.83 0.00 2.18
2867 3029 6.471198 CAGAATACTAAACGATCGTGTGCTAA 59.529 38.462 23.51 6.72 0.00 3.09
2868 3030 5.969435 CAGAATACTAAACGATCGTGTGCTA 59.031 40.000 23.51 10.21 0.00 3.49
2869 3031 4.798907 CAGAATACTAAACGATCGTGTGCT 59.201 41.667 23.51 11.36 0.00 4.40
2870 3032 4.548346 GCAGAATACTAAACGATCGTGTGC 60.548 45.833 23.51 12.69 0.00 4.57
2871 3033 4.798907 AGCAGAATACTAAACGATCGTGTG 59.201 41.667 23.51 16.52 0.00 3.82
2872 3034 4.995124 AGCAGAATACTAAACGATCGTGT 58.005 39.130 23.51 19.85 0.00 4.49
2873 3035 7.494130 CAATAGCAGAATACTAAACGATCGTG 58.506 38.462 23.51 12.16 0.00 4.35
2874 3036 6.144080 GCAATAGCAGAATACTAAACGATCGT 59.856 38.462 16.60 16.60 41.58 3.73
2875 3037 6.363626 AGCAATAGCAGAATACTAAACGATCG 59.636 38.462 14.88 14.88 45.49 3.69
2876 3038 7.644986 AGCAATAGCAGAATACTAAACGATC 57.355 36.000 0.00 0.00 45.49 3.69
2877 3039 8.438676 AAAGCAATAGCAGAATACTAAACGAT 57.561 30.769 0.00 0.00 45.49 3.73
2878 3040 7.764443 AGAAAGCAATAGCAGAATACTAAACGA 59.236 33.333 0.00 0.00 45.49 3.85
2879 3041 7.910304 AGAAAGCAATAGCAGAATACTAAACG 58.090 34.615 0.00 0.00 45.49 3.60
2880 3042 9.709600 GAAGAAAGCAATAGCAGAATACTAAAC 57.290 33.333 0.00 0.00 45.49 2.01
2881 3043 9.448438 TGAAGAAAGCAATAGCAGAATACTAAA 57.552 29.630 0.00 0.00 45.49 1.85
2882 3044 9.618890 ATGAAGAAAGCAATAGCAGAATACTAA 57.381 29.630 0.00 0.00 45.49 2.24
2883 3045 9.049523 CATGAAGAAAGCAATAGCAGAATACTA 57.950 33.333 0.00 0.00 45.49 1.82
2884 3046 7.772292 TCATGAAGAAAGCAATAGCAGAATACT 59.228 33.333 0.00 0.00 45.49 2.12
2885 3047 7.923888 TCATGAAGAAAGCAATAGCAGAATAC 58.076 34.615 0.00 0.00 45.49 1.89
2886 3048 7.772292 ACTCATGAAGAAAGCAATAGCAGAATA 59.228 33.333 0.00 0.00 45.49 1.75
2887 3049 6.602406 ACTCATGAAGAAAGCAATAGCAGAAT 59.398 34.615 0.00 0.00 45.49 2.40
2888 3050 5.942236 ACTCATGAAGAAAGCAATAGCAGAA 59.058 36.000 0.00 0.00 45.49 3.02
2889 3051 5.494724 ACTCATGAAGAAAGCAATAGCAGA 58.505 37.500 0.00 0.00 45.49 4.26
2890 3052 5.814764 ACTCATGAAGAAAGCAATAGCAG 57.185 39.130 0.00 0.00 45.49 4.24
2891 3053 7.870509 ATAACTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
2892 3054 8.830580 TGTATAACTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
2895 3057 9.182214 ACATGTATAACTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
2896 3058 8.565896 ACATGTATAACTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
2897 3059 8.565896 AACATGTATAACTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
2898 3060 8.125448 GGAACATGTATAACTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
2899 3061 9.388506 AGGAACATGTATAACTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
2902 3064 9.987272 CATAGGAACATGTATAACTCATGAAGA 57.013 33.333 0.00 0.00 43.47 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.