Multiple sequence alignment - TraesCS5A01G363300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G363300 chr5A 100.000 4068 0 0 1 4068 564070639 564074706 0.000000e+00 7513.0
1 TraesCS5A01G363300 chr5A 100.000 262 0 0 4309 4570 564074947 564075208 6.870000e-133 484.0
2 TraesCS5A01G363300 chr5A 95.735 211 9 0 1722 1932 564072147 564072357 1.570000e-89 340.0
3 TraesCS5A01G363300 chr5A 95.735 211 9 0 1509 1719 564072360 564072570 1.570000e-89 340.0
4 TraesCS5A01G363300 chr5A 100.000 35 0 0 1722 1756 564072330 564072364 1.060000e-06 65.8
5 TraesCS5A01G363300 chr5A 100.000 35 0 0 1692 1726 564072360 564072394 1.060000e-06 65.8
6 TraesCS5A01G363300 chr5B 92.827 2370 124 26 1722 4060 544327180 544329534 0.000000e+00 3393.0
7 TraesCS5A01G363300 chr5B 91.853 1522 81 21 211 1719 544325894 544327385 0.000000e+00 2084.0
8 TraesCS5A01G363300 chr5B 87.654 162 16 3 4395 4556 544329637 544329794 7.810000e-43 185.0
9 TraesCS5A01G363300 chr5B 98.824 85 0 1 4406 4489 658145702 658145786 2.850000e-32 150.0
10 TraesCS5A01G363300 chr5B 91.667 48 4 0 1679 1726 544327167 544327214 2.950000e-07 67.6
11 TraesCS5A01G363300 chr5D 94.715 1892 71 11 1722 3605 446398652 446400522 0.000000e+00 2913.0
12 TraesCS5A01G363300 chr5D 91.909 1755 93 21 1 1719 446397123 446398864 0.000000e+00 2409.0
13 TraesCS5A01G363300 chr5D 88.806 134 5 7 4359 4492 446400690 446400813 6.120000e-34 156.0
14 TraesCS5A01G363300 chr5D 89.908 109 8 3 4377 4483 522112037 522112144 2.220000e-28 137.0
15 TraesCS5A01G363300 chr3D 94.949 99 2 2 4387 4483 3302141 3302238 7.920000e-33 152.0
16 TraesCS5A01G363300 chr7A 97.701 87 0 1 4397 4483 618184365 618184449 1.020000e-31 148.0
17 TraesCS5A01G363300 chr7B 96.629 89 2 1 4396 4483 678837032 678836944 3.680000e-31 147.0
18 TraesCS5A01G363300 chr7B 92.157 102 5 3 4384 4484 678295771 678295870 1.710000e-29 141.0
19 TraesCS5A01G363300 chr7D 93.814 97 2 3 4397 4491 535550405 535550311 4.770000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G363300 chr5A 564070639 564075208 4569 False 1468.1 7513 98.578333 1 4570 6 chr5A.!!$F1 4569
1 TraesCS5A01G363300 chr5B 544325894 544329794 3900 False 1432.4 3393 91.000250 211 4556 4 chr5B.!!$F2 4345
2 TraesCS5A01G363300 chr5D 446397123 446400813 3690 False 1826.0 2913 91.810000 1 4492 3 chr5D.!!$F2 4491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.171007 GGCTCGCTGCAATGCTTTTA 59.829 50.0 6.82 0.00 45.15 1.52 F
1071 1112 0.031314 ATACTGTCGATGAGGCGCTG 59.969 55.0 7.64 0.00 0.00 5.18 F
1755 1796 0.030705 TCCAGGAGAGGCAGGCTAAT 60.031 55.0 0.00 0.00 0.00 1.73 F
1787 1828 1.334384 TATGGTAGAGCTTGCCGGCA 61.334 55.0 29.03 29.03 34.17 5.69 F
3071 3120 0.965866 TGATCGACGCAGAGGTTCCT 60.966 55.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 1777 0.030705 ATTAGCCTGCCTCTCCTGGA 60.031 55.0 0.00 0.0 0.00 3.86 R
3046 3095 0.299895 CTCTGCGTCGATCAACATGC 59.700 55.0 0.00 0.0 0.00 4.06 R
3071 3120 0.107703 CGGCTGACAGAATAAGGCCA 60.108 55.0 5.01 0.0 39.53 5.36 R
3566 3634 0.190069 TGTCAGGTATCCCGCCCTAT 59.810 55.0 0.00 0.0 35.12 2.57 R
3914 3985 0.482446 TGAAGCAGGTGGGTTTGGAT 59.518 50.0 0.00 0.0 37.33 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.122989 ACACCGGTGAGGGAGTGT 60.123 61.111 40.21 13.26 46.96 3.55
25 26 0.888619 GTGAGGGAGTGTGATGACGA 59.111 55.000 0.00 0.00 0.00 4.20
26 27 0.888619 TGAGGGAGTGTGATGACGAC 59.111 55.000 0.00 0.00 0.00 4.34
55 56 2.570181 GGCTCGCTGCAATGCTTT 59.430 55.556 6.82 0.00 45.15 3.51
57 58 0.171007 GGCTCGCTGCAATGCTTTTA 59.829 50.000 6.82 0.00 45.15 1.52
72 73 3.243941 TGCTTTTAGTCGTTGCTAGGTGA 60.244 43.478 0.00 0.00 0.00 4.02
73 74 3.123116 GCTTTTAGTCGTTGCTAGGTGAC 59.877 47.826 0.00 0.00 0.00 3.67
77 78 1.007336 GTCGTTGCTAGGTGACGGTG 61.007 60.000 0.00 0.00 37.39 4.94
80 81 1.706443 GTTGCTAGGTGACGGTGTAC 58.294 55.000 0.00 0.00 0.00 2.90
81 82 1.271656 GTTGCTAGGTGACGGTGTACT 59.728 52.381 0.00 0.00 0.00 2.73
110 111 7.372451 TGGATGTAATTTTCGTTACTCCTTG 57.628 36.000 12.26 0.00 35.38 3.61
111 112 7.162761 TGGATGTAATTTTCGTTACTCCTTGA 58.837 34.615 12.26 0.00 35.38 3.02
113 114 8.122952 GGATGTAATTTTCGTTACTCCTTGATG 58.877 37.037 0.00 0.00 35.94 3.07
114 115 8.786826 ATGTAATTTTCGTTACTCCTTGATGA 57.213 30.769 0.00 0.00 35.94 2.92
115 116 8.610248 TGTAATTTTCGTTACTCCTTGATGAA 57.390 30.769 0.00 0.00 35.94 2.57
287 313 5.267776 GTTTTCTTTCCATTTTCGTCGTCA 58.732 37.500 0.00 0.00 0.00 4.35
395 426 2.200650 CCCCCTCCTACCTACCCG 59.799 72.222 0.00 0.00 0.00 5.28
554 586 3.706373 AGTCCGGCCTGAATGCGT 61.706 61.111 0.00 0.00 0.00 5.24
578 610 1.227002 GTTCAGCCGAGGATCCGTC 60.227 63.158 5.98 3.66 0.00 4.79
664 696 2.357637 TGTTAGCTGTTGACTGTTTGGC 59.642 45.455 0.00 0.00 0.00 4.52
667 699 2.034124 AGCTGTTGACTGTTTGGCAAT 58.966 42.857 0.00 0.00 46.64 3.56
692 724 6.993902 TCTAACTGAAAATCGTTGGGTTAGTT 59.006 34.615 0.00 0.00 37.20 2.24
721 753 6.260936 CAGCCATTGTATTCCTTTGGTAGTAG 59.739 42.308 0.00 0.00 0.00 2.57
722 754 6.069615 AGCCATTGTATTCCTTTGGTAGTAGT 60.070 38.462 0.00 0.00 0.00 2.73
723 755 7.126726 AGCCATTGTATTCCTTTGGTAGTAGTA 59.873 37.037 0.00 0.00 0.00 1.82
724 756 7.226128 GCCATTGTATTCCTTTGGTAGTAGTAC 59.774 40.741 0.00 0.00 0.00 2.73
725 757 7.437267 CCATTGTATTCCTTTGGTAGTAGTACG 59.563 40.741 1.63 0.00 0.00 3.67
726 758 7.466746 TTGTATTCCTTTGGTAGTAGTACGT 57.533 36.000 0.00 0.00 0.00 3.57
743 775 9.454859 AGTAGTACGTACAACTTTAGGTCTATT 57.545 33.333 26.55 3.58 33.55 1.73
867 906 7.870509 TCAAATCAGAGAAATATGGTCCTTG 57.129 36.000 0.00 0.00 0.00 3.61
934 973 3.278574 TCCCATTTTACTTCTGATGCCG 58.721 45.455 0.00 0.00 0.00 5.69
1007 1048 7.719193 ACATGAAACCGATTAATCCATGTATCA 59.281 33.333 24.11 15.51 40.59 2.15
1010 1051 7.719193 TGAAACCGATTAATCCATGTATCATGT 59.281 33.333 9.87 0.00 0.00 3.21
1018 1059 8.806429 TTAATCCATGTATCATGTCTGTTTGT 57.194 30.769 8.57 0.00 0.00 2.83
1071 1112 0.031314 ATACTGTCGATGAGGCGCTG 59.969 55.000 7.64 0.00 0.00 5.18
1197 1238 2.700773 GGTTCACGCTGAATGGGGC 61.701 63.158 4.21 0.00 38.79 5.80
1251 1292 6.759497 AGTGTTGTATTTTTAGGGATGCTC 57.241 37.500 0.00 0.00 0.00 4.26
1435 1476 7.008021 AGCCAAGTAATGTTTTGGAATGATT 57.992 32.000 7.40 0.00 45.32 2.57
1525 1566 9.436957 TGAGTTTGACTAATTAAGATGTCTTCC 57.563 33.333 0.00 0.00 37.40 3.46
1526 1567 9.436957 GAGTTTGACTAATTAAGATGTCTTCCA 57.563 33.333 0.00 0.00 37.40 3.53
1527 1568 9.442047 AGTTTGACTAATTAAGATGTCTTCCAG 57.558 33.333 0.00 0.00 37.40 3.86
1528 1569 8.669243 GTTTGACTAATTAAGATGTCTTCCAGG 58.331 37.037 0.00 0.00 37.40 4.45
1529 1570 7.733773 TGACTAATTAAGATGTCTTCCAGGA 57.266 36.000 0.00 0.00 37.40 3.86
1530 1571 8.146053 TGACTAATTAAGATGTCTTCCAGGAA 57.854 34.615 0.71 0.71 37.40 3.36
1531 1572 8.602424 TGACTAATTAAGATGTCTTCCAGGAAA 58.398 33.333 2.72 0.00 37.40 3.13
1532 1573 9.103861 GACTAATTAAGATGTCTTCCAGGAAAG 57.896 37.037 2.72 0.00 37.40 2.62
1533 1574 8.049721 ACTAATTAAGATGTCTTCCAGGAAAGG 58.950 37.037 2.72 0.00 37.40 3.11
1534 1575 2.797177 AGATGTCTTCCAGGAAAGGC 57.203 50.000 2.72 0.00 0.00 4.35
1535 1576 1.988107 AGATGTCTTCCAGGAAAGGCA 59.012 47.619 2.72 5.92 44.37 4.75
1536 1577 2.026449 AGATGTCTTCCAGGAAAGGCAG 60.026 50.000 2.72 0.00 43.57 4.85
1537 1578 0.401738 TGTCTTCCAGGAAAGGCAGG 59.598 55.000 2.72 0.00 36.01 4.85
1538 1579 0.962855 GTCTTCCAGGAAAGGCAGGC 60.963 60.000 2.72 0.00 31.09 4.85
1539 1580 1.136329 TCTTCCAGGAAAGGCAGGCT 61.136 55.000 2.72 0.00 0.00 4.58
1540 1581 0.964358 CTTCCAGGAAAGGCAGGCTG 60.964 60.000 10.94 10.94 0.00 4.85
1541 1582 1.426251 TTCCAGGAAAGGCAGGCTGA 61.426 55.000 20.86 0.00 0.00 4.26
1542 1583 1.210204 TCCAGGAAAGGCAGGCTGAT 61.210 55.000 20.86 2.16 0.00 2.90
1543 1584 0.548031 CCAGGAAAGGCAGGCTGATA 59.452 55.000 20.86 0.00 0.00 2.15
1544 1585 1.144503 CCAGGAAAGGCAGGCTGATAT 59.855 52.381 20.86 0.00 0.00 1.63
1545 1586 2.373169 CCAGGAAAGGCAGGCTGATATA 59.627 50.000 20.86 0.00 0.00 0.86
1546 1587 3.181440 CCAGGAAAGGCAGGCTGATATAA 60.181 47.826 20.86 0.00 0.00 0.98
1547 1588 4.508047 CCAGGAAAGGCAGGCTGATATAAT 60.508 45.833 20.86 0.00 0.00 1.28
1548 1589 4.699257 CAGGAAAGGCAGGCTGATATAATC 59.301 45.833 20.86 7.72 0.00 1.75
1549 1590 4.013050 GGAAAGGCAGGCTGATATAATCC 58.987 47.826 20.86 12.99 0.00 3.01
1550 1591 3.728385 AAGGCAGGCTGATATAATCCC 57.272 47.619 20.86 7.07 0.00 3.85
1551 1592 2.926601 AGGCAGGCTGATATAATCCCT 58.073 47.619 20.86 9.52 0.00 4.20
1552 1593 2.575279 AGGCAGGCTGATATAATCCCTG 59.425 50.000 20.86 0.00 39.96 4.45
1553 1594 2.307098 GGCAGGCTGATATAATCCCTGT 59.693 50.000 20.86 0.00 39.49 4.00
1554 1595 3.604582 GCAGGCTGATATAATCCCTGTC 58.395 50.000 20.86 0.00 39.49 3.51
1555 1596 3.262915 GCAGGCTGATATAATCCCTGTCT 59.737 47.826 20.86 0.00 39.49 3.41
1556 1597 4.467795 GCAGGCTGATATAATCCCTGTCTA 59.532 45.833 20.86 0.00 39.49 2.59
1557 1598 5.130145 GCAGGCTGATATAATCCCTGTCTAT 59.870 44.000 20.86 0.00 39.49 1.98
1558 1599 6.580788 CAGGCTGATATAATCCCTGTCTATG 58.419 44.000 9.42 0.00 35.35 2.23
1559 1600 5.664908 AGGCTGATATAATCCCTGTCTATGG 59.335 44.000 0.00 0.00 0.00 2.74
1560 1601 5.426833 GGCTGATATAATCCCTGTCTATGGT 59.573 44.000 0.00 0.00 0.00 3.55
1561 1602 6.611642 GGCTGATATAATCCCTGTCTATGGTA 59.388 42.308 0.00 0.00 0.00 3.25
1562 1603 7.201956 GGCTGATATAATCCCTGTCTATGGTAG 60.202 44.444 0.00 0.00 0.00 3.18
1563 1604 7.561722 GCTGATATAATCCCTGTCTATGGTAGA 59.438 40.741 0.00 0.00 0.00 2.59
1564 1605 9.130661 CTGATATAATCCCTGTCTATGGTAGAG 57.869 40.741 0.00 0.00 35.04 2.43
1565 1606 7.561722 TGATATAATCCCTGTCTATGGTAGAGC 59.438 40.741 0.00 0.00 35.04 4.09
1566 1607 3.913370 ATCCCTGTCTATGGTAGAGCT 57.087 47.619 0.00 0.00 35.04 4.09
1567 1608 3.689872 TCCCTGTCTATGGTAGAGCTT 57.310 47.619 0.00 0.00 35.04 3.74
1568 1609 3.300388 TCCCTGTCTATGGTAGAGCTTG 58.700 50.000 0.00 0.00 35.04 4.01
1569 1610 2.224161 CCCTGTCTATGGTAGAGCTTGC 60.224 54.545 0.00 0.00 35.04 4.01
1570 1611 2.224161 CCTGTCTATGGTAGAGCTTGCC 60.224 54.545 0.00 0.00 35.04 4.52
1571 1612 1.409064 TGTCTATGGTAGAGCTTGCCG 59.591 52.381 0.00 0.00 35.04 5.69
1572 1613 1.040646 TCTATGGTAGAGCTTGCCGG 58.959 55.000 0.00 0.00 0.00 6.13
1573 1614 0.601311 CTATGGTAGAGCTTGCCGGC 60.601 60.000 22.73 22.73 0.00 6.13
1574 1615 1.334384 TATGGTAGAGCTTGCCGGCA 61.334 55.000 29.03 29.03 34.17 5.69
1575 1616 2.820037 GGTAGAGCTTGCCGGCAC 60.820 66.667 32.95 19.93 34.17 5.01
1592 1633 4.585955 GGCACGATAGGATAACTCTCAA 57.414 45.455 0.00 0.00 43.77 3.02
1593 1634 4.551388 GGCACGATAGGATAACTCTCAAG 58.449 47.826 0.00 0.00 43.77 3.02
1594 1635 4.038162 GGCACGATAGGATAACTCTCAAGT 59.962 45.833 0.00 0.00 43.77 3.16
1595 1636 5.452077 GGCACGATAGGATAACTCTCAAGTT 60.452 44.000 0.00 0.00 44.73 2.66
1596 1637 5.460419 GCACGATAGGATAACTCTCAAGTTG 59.540 44.000 0.00 0.00 43.24 3.16
1597 1638 6.680625 GCACGATAGGATAACTCTCAAGTTGA 60.681 42.308 5.25 5.25 43.24 3.18
1598 1639 6.915300 CACGATAGGATAACTCTCAAGTTGAG 59.085 42.308 24.37 24.37 43.24 3.02
1599 1640 6.829298 ACGATAGGATAACTCTCAAGTTGAGA 59.171 38.462 29.19 29.19 46.41 3.27
1608 1649 2.847327 TCAAGTTGAGAGCCAAGAGG 57.153 50.000 0.08 0.00 35.03 3.69
1609 1650 2.050144 TCAAGTTGAGAGCCAAGAGGT 58.950 47.619 0.08 0.00 35.03 3.85
1610 1651 2.439507 TCAAGTTGAGAGCCAAGAGGTT 59.560 45.455 0.08 0.00 35.03 3.50
1611 1652 2.551459 CAAGTTGAGAGCCAAGAGGTTG 59.449 50.000 0.00 0.00 35.03 3.77
1612 1653 0.877743 GTTGAGAGCCAAGAGGTTGC 59.122 55.000 0.00 0.00 35.03 4.17
1613 1654 0.767375 TTGAGAGCCAAGAGGTTGCT 59.233 50.000 0.00 0.00 37.19 3.91
1614 1655 1.644509 TGAGAGCCAAGAGGTTGCTA 58.355 50.000 0.00 0.00 37.19 3.49
1615 1656 2.191400 TGAGAGCCAAGAGGTTGCTAT 58.809 47.619 0.00 0.00 37.19 2.97
1616 1657 3.374764 TGAGAGCCAAGAGGTTGCTATA 58.625 45.455 0.00 0.00 37.19 1.31
1617 1658 3.969976 TGAGAGCCAAGAGGTTGCTATAT 59.030 43.478 0.00 0.00 37.19 0.86
1618 1659 5.147767 TGAGAGCCAAGAGGTTGCTATATA 58.852 41.667 0.00 0.00 37.19 0.86
1619 1660 5.782331 TGAGAGCCAAGAGGTTGCTATATAT 59.218 40.000 0.00 0.00 37.19 0.86
1620 1661 6.047511 AGAGCCAAGAGGTTGCTATATATG 57.952 41.667 0.00 0.00 37.19 1.78
1621 1662 5.046014 AGAGCCAAGAGGTTGCTATATATGG 60.046 44.000 0.00 0.00 37.19 2.74
1622 1663 4.018960 AGCCAAGAGGTTGCTATATATGGG 60.019 45.833 0.00 0.00 37.19 4.00
1623 1664 4.019321 GCCAAGAGGTTGCTATATATGGGA 60.019 45.833 0.00 0.00 37.19 4.37
1624 1665 5.339530 GCCAAGAGGTTGCTATATATGGGAT 60.340 44.000 0.00 0.00 37.19 3.85
1625 1666 6.118170 CCAAGAGGTTGCTATATATGGGATG 58.882 44.000 0.00 0.00 31.64 3.51
1626 1667 6.296662 CCAAGAGGTTGCTATATATGGGATGT 60.297 42.308 0.00 0.00 31.64 3.06
1627 1668 7.092891 CCAAGAGGTTGCTATATATGGGATGTA 60.093 40.741 0.00 0.00 31.64 2.29
1628 1669 7.667575 AGAGGTTGCTATATATGGGATGTAG 57.332 40.000 0.00 0.00 0.00 2.74
1629 1670 6.613271 AGAGGTTGCTATATATGGGATGTAGG 59.387 42.308 0.00 0.00 0.00 3.18
1630 1671 6.272320 AGGTTGCTATATATGGGATGTAGGT 58.728 40.000 0.00 0.00 0.00 3.08
1631 1672 6.735704 AGGTTGCTATATATGGGATGTAGGTT 59.264 38.462 0.00 0.00 0.00 3.50
1632 1673 6.823689 GGTTGCTATATATGGGATGTAGGTTG 59.176 42.308 0.00 0.00 0.00 3.77
1633 1674 6.560003 TGCTATATATGGGATGTAGGTTGG 57.440 41.667 0.00 0.00 0.00 3.77
1634 1675 5.428457 TGCTATATATGGGATGTAGGTTGGG 59.572 44.000 0.00 0.00 0.00 4.12
1635 1676 5.665812 GCTATATATGGGATGTAGGTTGGGA 59.334 44.000 0.00 0.00 0.00 4.37
1636 1677 6.157994 GCTATATATGGGATGTAGGTTGGGAA 59.842 42.308 0.00 0.00 0.00 3.97
1637 1678 7.147302 GCTATATATGGGATGTAGGTTGGGAAT 60.147 40.741 0.00 0.00 0.00 3.01
1638 1679 3.884037 ATGGGATGTAGGTTGGGAATC 57.116 47.619 0.00 0.00 0.00 2.52
1639 1680 2.858644 TGGGATGTAGGTTGGGAATCT 58.141 47.619 0.00 0.00 0.00 2.40
1640 1681 2.777692 TGGGATGTAGGTTGGGAATCTC 59.222 50.000 0.00 0.00 0.00 2.75
1641 1682 2.106684 GGGATGTAGGTTGGGAATCTCC 59.893 54.545 0.00 0.00 35.23 3.71
1642 1683 2.777692 GGATGTAGGTTGGGAATCTCCA 59.222 50.000 0.00 0.00 38.64 3.86
1643 1684 3.395941 GGATGTAGGTTGGGAATCTCCAT 59.604 47.826 0.00 0.00 38.64 3.41
1644 1685 4.597507 GGATGTAGGTTGGGAATCTCCATA 59.402 45.833 0.00 0.00 38.64 2.74
1645 1686 5.513267 GGATGTAGGTTGGGAATCTCCATAC 60.513 48.000 0.00 0.00 38.64 2.39
1646 1687 3.714798 TGTAGGTTGGGAATCTCCATACC 59.285 47.826 7.16 7.16 38.64 2.73
1647 1688 2.858644 AGGTTGGGAATCTCCATACCA 58.141 47.619 14.37 0.00 38.64 3.25
1648 1689 2.780010 AGGTTGGGAATCTCCATACCAG 59.220 50.000 14.37 0.00 38.64 4.00
1649 1690 2.777692 GGTTGGGAATCTCCATACCAGA 59.222 50.000 9.42 0.00 38.64 3.86
1650 1691 3.433740 GGTTGGGAATCTCCATACCAGAC 60.434 52.174 9.42 0.00 38.64 3.51
1651 1692 3.421394 TGGGAATCTCCATACCAGACT 57.579 47.619 0.00 0.00 38.64 3.24
1652 1693 4.552883 TGGGAATCTCCATACCAGACTA 57.447 45.455 0.00 0.00 38.64 2.59
1653 1694 4.483950 TGGGAATCTCCATACCAGACTAG 58.516 47.826 0.00 0.00 38.64 2.57
1654 1695 4.078571 TGGGAATCTCCATACCAGACTAGT 60.079 45.833 0.00 0.00 38.64 2.57
1655 1696 4.902448 GGGAATCTCCATACCAGACTAGTT 59.098 45.833 0.00 0.00 38.64 2.24
1656 1697 6.075984 GGGAATCTCCATACCAGACTAGTTA 58.924 44.000 0.00 0.00 38.64 2.24
1657 1698 6.015265 GGGAATCTCCATACCAGACTAGTTAC 60.015 46.154 0.00 0.00 38.64 2.50
1658 1699 6.294065 GGAATCTCCATACCAGACTAGTTACG 60.294 46.154 0.00 0.00 36.28 3.18
1659 1700 5.108187 TCTCCATACCAGACTAGTTACGT 57.892 43.478 0.00 0.00 0.00 3.57
1660 1701 5.503927 TCTCCATACCAGACTAGTTACGTT 58.496 41.667 0.00 0.00 0.00 3.99
1661 1702 5.356190 TCTCCATACCAGACTAGTTACGTTG 59.644 44.000 0.00 0.00 0.00 4.10
1662 1703 5.255687 TCCATACCAGACTAGTTACGTTGA 58.744 41.667 0.00 0.00 0.00 3.18
1663 1704 5.711506 TCCATACCAGACTAGTTACGTTGAA 59.288 40.000 0.00 0.00 0.00 2.69
1664 1705 6.379133 TCCATACCAGACTAGTTACGTTGAAT 59.621 38.462 0.00 0.00 0.00 2.57
1665 1706 6.696148 CCATACCAGACTAGTTACGTTGAATC 59.304 42.308 0.00 0.00 0.00 2.52
1666 1707 5.979288 ACCAGACTAGTTACGTTGAATCT 57.021 39.130 0.00 0.00 0.00 2.40
1667 1708 5.710984 ACCAGACTAGTTACGTTGAATCTG 58.289 41.667 0.00 0.15 33.63 2.90
1668 1709 4.563184 CCAGACTAGTTACGTTGAATCTGC 59.437 45.833 0.00 0.00 32.71 4.26
1669 1710 5.161358 CAGACTAGTTACGTTGAATCTGCA 58.839 41.667 0.00 0.00 0.00 4.41
1670 1711 5.807520 CAGACTAGTTACGTTGAATCTGCAT 59.192 40.000 0.00 0.00 0.00 3.96
1671 1712 6.972901 CAGACTAGTTACGTTGAATCTGCATA 59.027 38.462 0.00 0.00 0.00 3.14
1672 1713 6.973474 AGACTAGTTACGTTGAATCTGCATAC 59.027 38.462 0.00 0.00 0.00 2.39
1673 1714 6.040878 ACTAGTTACGTTGAATCTGCATACC 58.959 40.000 0.00 0.00 0.00 2.73
1674 1715 4.827692 AGTTACGTTGAATCTGCATACCA 58.172 39.130 0.00 0.00 0.00 3.25
1675 1716 4.870426 AGTTACGTTGAATCTGCATACCAG 59.130 41.667 0.00 0.00 43.17 4.00
1686 1727 4.537751 TCTGCATACCAGACTAGCTAAGT 58.462 43.478 0.00 0.00 45.44 2.24
1687 1728 4.339530 TCTGCATACCAGACTAGCTAAGTG 59.660 45.833 0.00 0.00 45.44 3.16
1688 1729 4.023980 TGCATACCAGACTAGCTAAGTGT 58.976 43.478 0.00 0.00 39.07 3.55
1689 1730 5.198207 TGCATACCAGACTAGCTAAGTGTA 58.802 41.667 0.00 0.00 39.07 2.90
1726 1767 0.842635 CCAGGAGAGGCAGGCTAATT 59.157 55.000 0.00 0.00 0.00 1.40
1727 1768 2.050144 CCAGGAGAGGCAGGCTAATTA 58.950 52.381 0.00 0.00 0.00 1.40
1728 1769 2.038295 CCAGGAGAGGCAGGCTAATTAG 59.962 54.545 8.20 8.20 0.00 1.73
1729 1770 2.038295 CAGGAGAGGCAGGCTAATTAGG 59.962 54.545 14.28 0.00 0.00 2.69
1730 1771 2.090494 AGGAGAGGCAGGCTAATTAGGA 60.090 50.000 14.28 0.00 0.00 2.94
1731 1772 2.909662 GGAGAGGCAGGCTAATTAGGAT 59.090 50.000 14.28 0.00 0.00 3.24
1732 1773 3.307339 GGAGAGGCAGGCTAATTAGGATG 60.307 52.174 14.28 0.56 0.00 3.51
1733 1774 3.321950 AGAGGCAGGCTAATTAGGATGT 58.678 45.455 14.28 0.00 0.00 3.06
1734 1775 3.326297 AGAGGCAGGCTAATTAGGATGTC 59.674 47.826 14.28 0.00 0.00 3.06
1735 1776 3.321950 AGGCAGGCTAATTAGGATGTCT 58.678 45.455 14.28 2.82 0.00 3.41
1736 1777 3.718956 AGGCAGGCTAATTAGGATGTCTT 59.281 43.478 14.28 0.00 0.00 3.01
1737 1778 4.068599 GGCAGGCTAATTAGGATGTCTTC 58.931 47.826 14.28 0.00 0.00 2.87
1738 1779 4.068599 GCAGGCTAATTAGGATGTCTTCC 58.931 47.826 14.28 4.29 45.85 3.46
1747 1788 0.467804 GGATGTCTTCCAGGAGAGGC 59.532 60.000 0.00 0.00 44.74 4.70
1748 1789 1.198713 GATGTCTTCCAGGAGAGGCA 58.801 55.000 7.99 7.99 0.00 4.75
1749 1790 1.138661 GATGTCTTCCAGGAGAGGCAG 59.861 57.143 10.50 0.00 0.00 4.85
1750 1791 0.906756 TGTCTTCCAGGAGAGGCAGG 60.907 60.000 2.74 0.00 0.00 4.85
1751 1792 1.992277 TCTTCCAGGAGAGGCAGGC 60.992 63.158 0.00 0.00 0.00 4.85
1752 1793 1.994507 CTTCCAGGAGAGGCAGGCT 60.995 63.158 0.00 0.00 0.00 4.58
1753 1794 0.689080 CTTCCAGGAGAGGCAGGCTA 60.689 60.000 0.00 0.00 0.00 3.93
1754 1795 0.252696 TTCCAGGAGAGGCAGGCTAA 60.253 55.000 0.00 0.00 0.00 3.09
1755 1796 0.030705 TCCAGGAGAGGCAGGCTAAT 60.031 55.000 0.00 0.00 0.00 1.73
1787 1828 1.334384 TATGGTAGAGCTTGCCGGCA 61.334 55.000 29.03 29.03 34.17 5.69
1865 1913 4.760530 TGGGAATCTTCATACCAGACTG 57.239 45.455 0.00 0.00 0.00 3.51
2070 2118 2.432563 CTTGTAACCGGTGGGGCA 59.567 61.111 8.52 1.68 40.62 5.36
2279 2327 1.541588 GCTTGCTTGGGTAAGTTCCTG 59.458 52.381 0.00 0.00 37.46 3.86
2317 2365 7.495901 AGTAATACCATTGTCTGAGTGATCTG 58.504 38.462 0.00 0.00 0.00 2.90
2353 2402 3.426159 GGCACAATAGATCAAACCACACG 60.426 47.826 0.00 0.00 0.00 4.49
2421 2470 2.094078 GCAATTTGCAGGCACTAATCCA 60.094 45.455 16.35 0.00 44.26 3.41
2478 2527 4.198890 TGGCTGCTAGCGCTCTCG 62.199 66.667 16.34 4.83 43.62 4.04
2710 2759 3.889538 GGTTTCAGCTAGGAAAACCAACT 59.110 43.478 19.47 0.00 38.29 3.16
2811 2860 4.825634 TCGACTCTTCTTCTTTGGACTGTA 59.174 41.667 0.00 0.00 0.00 2.74
2859 2908 2.288825 CGGTCTTGTTCTGCTAACCTCA 60.289 50.000 0.91 0.00 0.00 3.86
2879 2928 5.883685 TCAGAGCTGAGTCATGGAAATAT 57.116 39.130 0.00 0.00 34.14 1.28
3011 3060 5.818857 CCTATGGCCAATCATTTTTCCTTTG 59.181 40.000 10.96 0.00 0.00 2.77
3024 3073 5.860648 TTTTCCTTTGACCTATCCTTCCT 57.139 39.130 0.00 0.00 0.00 3.36
3032 3081 8.171400 CCTTTGACCTATCCTTCCTAGAGTATA 58.829 40.741 0.00 0.00 0.00 1.47
3046 3095 6.711194 TCCTAGAGTATACTTCTCATTCACGG 59.289 42.308 6.88 0.00 34.73 4.94
3071 3120 0.965866 TGATCGACGCAGAGGTTCCT 60.966 55.000 0.00 0.00 0.00 3.36
3086 3135 2.026262 GGTTCCTGGCCTTATTCTGTCA 60.026 50.000 3.32 0.00 0.00 3.58
3173 3222 3.054875 TGTGCATAGCTCCTCTCATGTTT 60.055 43.478 0.00 0.00 0.00 2.83
3194 3243 1.186200 CTCAGACGGAATCCCTGACA 58.814 55.000 4.45 0.00 33.80 3.58
3241 3290 2.467826 GCATCTCCGCCAGCTTCAC 61.468 63.158 0.00 0.00 0.00 3.18
3263 3312 2.735772 CCTGCACATCTACGCCCCT 61.736 63.158 0.00 0.00 0.00 4.79
3313 3366 7.337942 CACCCTGTATTCTGCTAAATCTCTTTT 59.662 37.037 0.00 0.00 0.00 2.27
3316 3369 8.180267 CCTGTATTCTGCTAAATCTCTTTTGTG 58.820 37.037 0.00 0.00 0.00 3.33
3353 3421 1.344438 CGCCTCTTGCAGATATACCCA 59.656 52.381 0.00 0.00 41.33 4.51
3356 3424 3.181450 GCCTCTTGCAGATATACCCAACT 60.181 47.826 0.00 0.00 40.77 3.16
3425 3493 4.115199 GGGATCCTGTGCCCGCTT 62.115 66.667 12.58 0.00 34.00 4.68
3570 3638 1.956170 GACCACATCGCGGCATAGG 60.956 63.158 6.13 5.06 0.00 2.57
3599 3668 1.816835 CCTGACAATGACATTGCTGCT 59.183 47.619 24.85 8.24 43.98 4.24
3635 3704 1.736681 GCTGTGAGCATTTGACTCTCC 59.263 52.381 0.00 0.00 41.89 3.71
3647 3716 2.739943 TGACTCTCCAGATACACAGGG 58.260 52.381 0.00 0.00 0.00 4.45
3649 3718 3.268595 TGACTCTCCAGATACACAGGGTA 59.731 47.826 0.00 0.00 36.16 3.69
3652 3721 4.477581 ACTCTCCAGATACACAGGGTACTA 59.522 45.833 0.00 0.00 34.07 1.82
3663 3732 1.038130 AGGGTACTACAGAGCTGGCG 61.038 60.000 0.00 0.00 34.19 5.69
3689 3758 2.914379 CGGAAGCCGTTCAGTTTCT 58.086 52.632 0.00 0.00 42.73 2.52
3696 3765 3.288092 AGCCGTTCAGTTTCTTTCCTTT 58.712 40.909 0.00 0.00 0.00 3.11
3765 3834 4.642466 ACAGAAAGGGAAGGAGTAAAGG 57.358 45.455 0.00 0.00 0.00 3.11
3774 3843 3.939592 GGAAGGAGTAAAGGTGATTTCGG 59.060 47.826 0.00 0.00 32.01 4.30
3776 3845 2.910977 AGGAGTAAAGGTGATTTCGGGT 59.089 45.455 0.00 0.00 32.01 5.28
3788 3857 4.698304 GTGATTTCGGGTTTCTGGATGTTA 59.302 41.667 0.00 0.00 0.00 2.41
3793 3862 4.658063 TCGGGTTTCTGGATGTTATTGTT 58.342 39.130 0.00 0.00 0.00 2.83
3801 3870 9.353999 GTTTCTGGATGTTATTGTTGAATTACC 57.646 33.333 0.00 0.00 0.00 2.85
3809 3878 8.024145 TGTTATTGTTGAATTACCCTGGTTTT 57.976 30.769 0.00 0.00 0.00 2.43
3810 3879 8.145122 TGTTATTGTTGAATTACCCTGGTTTTC 58.855 33.333 0.00 0.00 0.00 2.29
3811 3880 6.739331 ATTGTTGAATTACCCTGGTTTTCA 57.261 33.333 9.19 9.19 31.70 2.69
3812 3881 5.782893 TGTTGAATTACCCTGGTTTTCAG 57.217 39.130 11.72 0.00 43.00 3.02
3813 3882 5.205056 TGTTGAATTACCCTGGTTTTCAGT 58.795 37.500 11.72 0.00 41.83 3.41
3814 3883 6.366340 TGTTGAATTACCCTGGTTTTCAGTA 58.634 36.000 11.72 5.72 41.83 2.74
3815 3884 6.488683 TGTTGAATTACCCTGGTTTTCAGTAG 59.511 38.462 11.72 0.00 41.83 2.57
3816 3885 6.442541 TGAATTACCCTGGTTTTCAGTAGA 57.557 37.500 9.19 0.00 41.83 2.59
3817 3886 7.027874 TGAATTACCCTGGTTTTCAGTAGAT 57.972 36.000 9.19 0.00 41.83 1.98
3818 3887 6.884295 TGAATTACCCTGGTTTTCAGTAGATG 59.116 38.462 9.19 0.00 41.83 2.90
3819 3888 6.636454 ATTACCCTGGTTTTCAGTAGATGA 57.364 37.500 0.00 0.00 41.83 2.92
3820 3889 6.636454 TTACCCTGGTTTTCAGTAGATGAT 57.364 37.500 0.00 0.00 41.83 2.45
3821 3890 7.743116 TTACCCTGGTTTTCAGTAGATGATA 57.257 36.000 0.00 0.00 41.83 2.15
3822 3891 6.636454 ACCCTGGTTTTCAGTAGATGATAA 57.364 37.500 0.00 0.00 41.83 1.75
3823 3892 6.415573 ACCCTGGTTTTCAGTAGATGATAAC 58.584 40.000 0.00 3.51 44.51 1.89
3857 3926 5.246203 TGATATTATGACTTCTTCGAGGGGG 59.754 44.000 0.00 0.00 0.00 5.40
3859 3928 1.490574 ATGACTTCTTCGAGGGGGAG 58.509 55.000 0.00 0.00 0.00 4.30
3866 3935 3.330126 TCTTCGAGGGGGAGATACAAT 57.670 47.619 0.00 0.00 0.00 2.71
3873 3942 2.374504 AGGGGGAGATACAATGCTGATG 59.625 50.000 0.00 0.00 0.00 3.07
3876 3945 4.225942 GGGGGAGATACAATGCTGATGATA 59.774 45.833 0.00 0.00 0.00 2.15
3879 3948 6.413052 GGGAGATACAATGCTGATGATATGT 58.587 40.000 0.00 0.00 0.00 2.29
3892 3961 7.914871 TGCTGATGATATGTAATTTCCGTTTTG 59.085 33.333 0.00 0.00 0.00 2.44
3893 3962 7.096477 GCTGATGATATGTAATTTCCGTTTTGC 60.096 37.037 0.00 0.00 0.00 3.68
3895 3964 6.767524 TGATATGTAATTTCCGTTTTGCCT 57.232 33.333 0.00 0.00 0.00 4.75
3896 3965 6.559810 TGATATGTAATTTCCGTTTTGCCTG 58.440 36.000 0.00 0.00 0.00 4.85
3897 3966 3.019933 TGTAATTTCCGTTTTGCCTGC 57.980 42.857 0.00 0.00 0.00 4.85
3898 3967 1.982913 GTAATTTCCGTTTTGCCTGCG 59.017 47.619 0.00 0.00 0.00 5.18
3899 3968 0.943835 AATTTCCGTTTTGCCTGCGC 60.944 50.000 0.00 0.00 0.00 6.09
3918 3989 3.737663 GCGCCTGCATTTGATTTTATCCA 60.738 43.478 0.00 0.00 42.15 3.41
3921 3992 5.220453 CGCCTGCATTTGATTTTATCCAAAC 60.220 40.000 0.00 0.00 35.42 2.93
3952 4027 7.334090 TGCTTCATCTAGCAGAGAAATTAGTT 58.666 34.615 0.00 0.00 45.72 2.24
3979 4054 5.180271 GCATTTTGGTCCATCAATCATTGT 58.820 37.500 0.00 0.00 0.00 2.71
4052 4131 4.679372 GCTCTCTGACTCCTACCATTTGAC 60.679 50.000 0.00 0.00 0.00 3.18
4060 4139 4.341520 ACTCCTACCATTTGACGTATCTCC 59.658 45.833 0.00 0.00 0.00 3.71
4062 4141 3.641906 CCTACCATTTGACGTATCTCCCT 59.358 47.826 0.00 0.00 0.00 4.20
4063 4142 3.543680 ACCATTTGACGTATCTCCCTG 57.456 47.619 0.00 0.00 0.00 4.45
4064 4143 2.213499 CCATTTGACGTATCTCCCTGC 58.787 52.381 0.00 0.00 0.00 4.85
4065 4144 2.158900 CCATTTGACGTATCTCCCTGCT 60.159 50.000 0.00 0.00 0.00 4.24
4066 4145 3.535561 CATTTGACGTATCTCCCTGCTT 58.464 45.455 0.00 0.00 0.00 3.91
4381 4466 7.873739 AAAAATGTTGCATTTCTACAGTAGC 57.126 32.000 2.26 0.00 34.15 3.58
4382 4467 6.824305 AAATGTTGCATTTCTACAGTAGCT 57.176 33.333 2.26 0.00 34.15 3.32
4388 4477 8.236586 TGTTGCATTTCTACAGTAGCTAAAATG 58.763 33.333 19.73 19.73 37.23 2.32
4390 4479 8.201554 TGCATTTCTACAGTAGCTAAAATGAG 57.798 34.615 24.43 9.80 36.62 2.90
4394 4483 9.606631 ATTTCTACAGTAGCTAAAATGAGAAGG 57.393 33.333 2.26 0.00 0.00 3.46
4395 4484 7.956328 TCTACAGTAGCTAAAATGAGAAGGA 57.044 36.000 2.26 0.00 0.00 3.36
4396 4485 8.362464 TCTACAGTAGCTAAAATGAGAAGGAA 57.638 34.615 2.26 0.00 0.00 3.36
4397 4486 8.812972 TCTACAGTAGCTAAAATGAGAAGGAAA 58.187 33.333 2.26 0.00 0.00 3.13
4398 4487 9.436957 CTACAGTAGCTAAAATGAGAAGGAAAA 57.563 33.333 0.00 0.00 0.00 2.29
4399 4488 8.691661 ACAGTAGCTAAAATGAGAAGGAAAAA 57.308 30.769 0.00 0.00 0.00 1.94
4492 4581 1.335689 ACTACGACGGAGCTTGTTGAC 60.336 52.381 7.09 0.00 0.00 3.18
4493 4582 0.669619 TACGACGGAGCTTGTTGACA 59.330 50.000 12.75 0.21 0.00 3.58
4494 4583 0.874607 ACGACGGAGCTTGTTGACAC 60.875 55.000 12.75 0.00 0.00 3.67
4496 4585 0.861837 GACGGAGCTTGTTGACACTG 59.138 55.000 0.00 0.00 0.00 3.66
4502 4591 2.740981 GAGCTTGTTGACACTGATCTGG 59.259 50.000 4.49 0.00 0.00 3.86
4504 4593 2.811873 GCTTGTTGACACTGATCTGGGT 60.812 50.000 7.28 7.28 0.00 4.51
4507 4596 4.002906 TGTTGACACTGATCTGGGTTAC 57.997 45.455 9.06 10.68 0.00 2.50
4511 4600 3.650942 TGACACTGATCTGGGTTACCTTT 59.349 43.478 9.06 0.00 37.76 3.11
4513 4602 4.398319 ACACTGATCTGGGTTACCTTTTG 58.602 43.478 0.93 0.00 37.76 2.44
4518 4607 6.012858 ACTGATCTGGGTTACCTTTTGTATCA 60.013 38.462 0.00 2.49 37.76 2.15
4528 4617 7.093509 GGTTACCTTTTGTATCAATTGGACCAT 60.094 37.037 5.42 0.00 0.00 3.55
4529 4618 8.962679 GTTACCTTTTGTATCAATTGGACCATA 58.037 33.333 5.42 0.00 0.00 2.74
4530 4619 7.404671 ACCTTTTGTATCAATTGGACCATAC 57.595 36.000 5.42 6.81 0.00 2.39
4531 4620 6.951198 ACCTTTTGTATCAATTGGACCATACA 59.049 34.615 11.64 11.64 31.34 2.29
4532 4621 7.122650 ACCTTTTGTATCAATTGGACCATACAG 59.877 37.037 14.04 8.21 34.13 2.74
4533 4622 7.403312 TTTTGTATCAATTGGACCATACAGG 57.597 36.000 14.04 0.00 45.67 4.00
4566 4655 3.565979 CCATGGGAGAGAGATGGGA 57.434 57.895 2.85 0.00 34.14 4.37
4567 4656 1.055040 CCATGGGAGAGAGATGGGAC 58.945 60.000 2.85 0.00 34.14 4.46
4568 4657 1.055040 CATGGGAGAGAGATGGGACC 58.945 60.000 0.00 0.00 0.00 4.46
4569 4658 0.948050 ATGGGAGAGAGATGGGACCT 59.052 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.557059 AAGGCGCATCGTCGTCATCA 62.557 55.000 10.83 0.00 36.23 3.07
42 43 1.135972 ACGACTAAAAGCATTGCAGCG 60.136 47.619 11.91 9.47 40.15 5.18
46 47 2.933769 AGCAACGACTAAAAGCATTGC 58.066 42.857 0.00 0.00 42.11 3.56
47 48 4.154195 ACCTAGCAACGACTAAAAGCATTG 59.846 41.667 0.00 0.00 0.00 2.82
49 50 3.684788 CACCTAGCAACGACTAAAAGCAT 59.315 43.478 0.00 0.00 0.00 3.79
55 56 1.200716 CCGTCACCTAGCAACGACTAA 59.799 52.381 10.26 0.00 38.65 2.24
57 58 1.177256 ACCGTCACCTAGCAACGACT 61.177 55.000 10.26 0.00 38.65 4.18
72 73 6.665992 ATTACATCCATCATAGTACACCGT 57.334 37.500 0.00 0.00 0.00 4.83
73 74 7.962964 AAATTACATCCATCATAGTACACCG 57.037 36.000 0.00 0.00 0.00 4.94
81 82 9.268268 GGAGTAACGAAAATTACATCCATCATA 57.732 33.333 0.00 0.00 37.49 2.15
144 167 8.008513 ACGAGAAAACTCTATGCCTCTATTTA 57.991 34.615 0.00 0.00 0.00 1.40
147 170 7.448777 TCATACGAGAAAACTCTATGCCTCTAT 59.551 37.037 0.00 0.00 0.00 1.98
191 216 4.229582 AGGATATTGTGCCCAAAAGGACTA 59.770 41.667 0.00 0.00 38.24 2.59
192 217 3.011708 AGGATATTGTGCCCAAAAGGACT 59.988 43.478 0.00 0.00 38.24 3.85
193 218 3.365472 AGGATATTGTGCCCAAAAGGAC 58.635 45.455 0.00 0.00 38.24 3.85
194 219 3.756082 AGGATATTGTGCCCAAAAGGA 57.244 42.857 0.00 0.00 38.24 3.36
382 413 0.534652 CTCGTCCGGGTAGGTAGGAG 60.535 65.000 0.00 0.00 41.99 3.69
395 426 4.256462 GGGGAGAGTACCTCGTCC 57.744 66.667 5.59 6.16 42.89 4.79
554 586 0.976641 ATCCTCGGCTGAACAAGTCA 59.023 50.000 0.00 0.00 34.17 3.41
587 619 2.766828 ATCTAGGCAACCTAGGTCACAC 59.233 50.000 16.64 6.32 43.46 3.82
590 622 7.924358 TTATAAATCTAGGCAACCTAGGTCA 57.076 36.000 16.64 5.90 45.89 4.02
664 696 6.254281 ACCCAACGATTTTCAGTTAGATTG 57.746 37.500 0.00 0.00 0.00 2.67
667 699 6.527423 ACTAACCCAACGATTTTCAGTTAGA 58.473 36.000 12.51 0.00 38.16 2.10
692 724 4.220382 CCAAAGGAATACAATGGCTGACAA 59.780 41.667 0.00 0.00 0.00 3.18
721 753 9.070149 CAGAAATAGACCTAAAGTTGTACGTAC 57.930 37.037 18.90 18.90 0.00 3.67
722 754 8.796475 ACAGAAATAGACCTAAAGTTGTACGTA 58.204 33.333 0.00 0.00 0.00 3.57
723 755 7.597743 CACAGAAATAGACCTAAAGTTGTACGT 59.402 37.037 0.00 0.00 0.00 3.57
724 756 7.597743 ACACAGAAATAGACCTAAAGTTGTACG 59.402 37.037 0.00 0.00 0.00 3.67
725 757 8.828688 ACACAGAAATAGACCTAAAGTTGTAC 57.171 34.615 0.00 0.00 0.00 2.90
726 758 9.268268 CAACACAGAAATAGACCTAAAGTTGTA 57.732 33.333 0.00 0.00 0.00 2.41
743 775 0.178992 CCCCCTTGCTCAACACAGAA 60.179 55.000 0.00 0.00 0.00 3.02
867 906 9.113838 TCCATCATCAGAAGTAAAAATAAGCTC 57.886 33.333 0.00 0.00 0.00 4.09
934 973 6.825944 AGAAGTCTCTTTTTCCATTAAGGC 57.174 37.500 0.00 0.00 37.29 4.35
977 1018 5.406649 TGGATTAATCGGTTTCATGTTTGC 58.593 37.500 9.32 0.00 0.00 3.68
1007 1048 9.480053 CCATCTGAAAAATAAACAAACAGACAT 57.520 29.630 0.00 0.00 36.11 3.06
1010 1051 8.359642 CCTCCATCTGAAAAATAAACAAACAGA 58.640 33.333 0.00 0.00 37.33 3.41
1018 1059 5.414454 CACCGTCCTCCATCTGAAAAATAAA 59.586 40.000 0.00 0.00 0.00 1.40
1071 1112 2.045340 CCGAACCCCATGGACACC 60.045 66.667 15.22 0.00 34.81 4.16
1100 1141 1.448985 GGAATAGGCAAGCACGAACA 58.551 50.000 0.00 0.00 0.00 3.18
1197 1238 2.038295 ACTCTCTTCCTGTGCAGAAAGG 59.962 50.000 0.02 3.99 34.65 3.11
1251 1292 1.202533 CCCCAACAGTATGCTCCTACG 60.203 57.143 0.00 0.00 42.53 3.51
1358 1399 4.213482 GCATAAATTCCGCTGTTAGGGTAG 59.787 45.833 0.00 0.00 0.00 3.18
1359 1400 4.131596 GCATAAATTCCGCTGTTAGGGTA 58.868 43.478 0.00 0.00 0.00 3.69
1507 1548 8.049721 CCTTTCCTGGAAGACATCTTAATTAGT 58.950 37.037 9.42 0.00 36.11 2.24
1508 1549 7.012799 GCCTTTCCTGGAAGACATCTTAATTAG 59.987 40.741 9.42 0.00 36.11 1.73
1509 1550 6.828785 GCCTTTCCTGGAAGACATCTTAATTA 59.171 38.462 9.42 0.00 36.11 1.40
1510 1551 5.654209 GCCTTTCCTGGAAGACATCTTAATT 59.346 40.000 9.42 0.00 36.11 1.40
1511 1552 5.196695 GCCTTTCCTGGAAGACATCTTAAT 58.803 41.667 9.42 0.00 36.11 1.40
1512 1553 4.042809 TGCCTTTCCTGGAAGACATCTTAA 59.957 41.667 9.42 0.00 36.11 1.85
1513 1554 3.587061 TGCCTTTCCTGGAAGACATCTTA 59.413 43.478 9.42 0.00 36.11 2.10
1514 1555 2.376518 TGCCTTTCCTGGAAGACATCTT 59.623 45.455 9.42 0.00 39.23 2.40
1515 1556 1.988107 TGCCTTTCCTGGAAGACATCT 59.012 47.619 9.42 0.00 34.07 2.90
1516 1557 2.363683 CTGCCTTTCCTGGAAGACATC 58.636 52.381 9.42 0.13 34.60 3.06
1517 1558 1.005215 CCTGCCTTTCCTGGAAGACAT 59.995 52.381 9.42 0.00 34.60 3.06
1518 1559 0.401738 CCTGCCTTTCCTGGAAGACA 59.598 55.000 9.42 8.32 34.60 3.41
1519 1560 0.962855 GCCTGCCTTTCCTGGAAGAC 60.963 60.000 9.42 4.08 34.60 3.01
1520 1561 1.136329 AGCCTGCCTTTCCTGGAAGA 61.136 55.000 9.42 0.67 34.60 2.87
1521 1562 0.964358 CAGCCTGCCTTTCCTGGAAG 60.964 60.000 9.42 0.12 32.39 3.46
1522 1563 1.075482 CAGCCTGCCTTTCCTGGAA 59.925 57.895 4.68 4.68 0.00 3.53
1523 1564 1.210204 ATCAGCCTGCCTTTCCTGGA 61.210 55.000 0.00 0.00 0.00 3.86
1524 1565 0.548031 TATCAGCCTGCCTTTCCTGG 59.452 55.000 0.00 0.00 0.00 4.45
1525 1566 2.653234 ATATCAGCCTGCCTTTCCTG 57.347 50.000 0.00 0.00 0.00 3.86
1526 1567 4.263683 GGATTATATCAGCCTGCCTTTCCT 60.264 45.833 0.00 0.00 0.00 3.36
1527 1568 4.013050 GGATTATATCAGCCTGCCTTTCC 58.987 47.826 0.00 0.00 0.00 3.13
1528 1569 4.013050 GGGATTATATCAGCCTGCCTTTC 58.987 47.826 0.00 0.00 0.00 2.62
1529 1570 3.659686 AGGGATTATATCAGCCTGCCTTT 59.340 43.478 0.00 0.00 0.00 3.11
1530 1571 3.009916 CAGGGATTATATCAGCCTGCCTT 59.990 47.826 0.00 0.00 33.81 4.35
1531 1572 2.575279 CAGGGATTATATCAGCCTGCCT 59.425 50.000 0.00 0.00 33.81 4.75
1532 1573 2.307098 ACAGGGATTATATCAGCCTGCC 59.693 50.000 0.00 0.00 40.37 4.85
1533 1574 3.262915 AGACAGGGATTATATCAGCCTGC 59.737 47.826 0.00 0.00 40.37 4.85
1534 1575 6.407865 CCATAGACAGGGATTATATCAGCCTG 60.408 46.154 0.00 0.00 41.61 4.85
1535 1576 5.664908 CCATAGACAGGGATTATATCAGCCT 59.335 44.000 0.00 0.00 0.00 4.58
1536 1577 5.426833 ACCATAGACAGGGATTATATCAGCC 59.573 44.000 0.00 0.00 0.00 4.85
1537 1578 6.552445 ACCATAGACAGGGATTATATCAGC 57.448 41.667 0.00 0.00 0.00 4.26
1538 1579 9.130661 CTCTACCATAGACAGGGATTATATCAG 57.869 40.741 0.00 0.00 0.00 2.90
1539 1580 7.561722 GCTCTACCATAGACAGGGATTATATCA 59.438 40.741 0.00 0.00 0.00 2.15
1540 1581 7.782644 AGCTCTACCATAGACAGGGATTATATC 59.217 40.741 0.00 0.00 0.00 1.63
1541 1582 7.657306 AGCTCTACCATAGACAGGGATTATAT 58.343 38.462 0.00 0.00 0.00 0.86
1542 1583 7.045693 AGCTCTACCATAGACAGGGATTATA 57.954 40.000 0.00 0.00 0.00 0.98
1543 1584 5.909760 AGCTCTACCATAGACAGGGATTAT 58.090 41.667 0.00 0.00 0.00 1.28
1544 1585 5.340891 AGCTCTACCATAGACAGGGATTA 57.659 43.478 0.00 0.00 0.00 1.75
1545 1586 4.206244 AGCTCTACCATAGACAGGGATT 57.794 45.455 0.00 0.00 0.00 3.01
1546 1587 3.900601 CAAGCTCTACCATAGACAGGGAT 59.099 47.826 0.00 0.00 0.00 3.85
1547 1588 3.300388 CAAGCTCTACCATAGACAGGGA 58.700 50.000 0.00 0.00 0.00 4.20
1548 1589 2.224161 GCAAGCTCTACCATAGACAGGG 60.224 54.545 0.00 0.00 0.00 4.45
1549 1590 2.224161 GGCAAGCTCTACCATAGACAGG 60.224 54.545 0.00 0.00 0.00 4.00
1550 1591 2.544694 CGGCAAGCTCTACCATAGACAG 60.545 54.545 0.00 0.00 0.00 3.51
1551 1592 1.409064 CGGCAAGCTCTACCATAGACA 59.591 52.381 0.00 0.00 0.00 3.41
1552 1593 1.269831 CCGGCAAGCTCTACCATAGAC 60.270 57.143 0.00 0.00 0.00 2.59
1553 1594 1.040646 CCGGCAAGCTCTACCATAGA 58.959 55.000 0.00 0.00 0.00 1.98
1554 1595 0.601311 GCCGGCAAGCTCTACCATAG 60.601 60.000 24.80 0.00 0.00 2.23
1555 1596 1.334384 TGCCGGCAAGCTCTACCATA 61.334 55.000 30.74 0.00 0.00 2.74
1556 1597 2.190578 GCCGGCAAGCTCTACCAT 59.809 61.111 24.80 0.00 0.00 3.55
1557 1598 3.318384 TGCCGGCAAGCTCTACCA 61.318 61.111 30.74 0.00 0.00 3.25
1558 1599 2.820037 GTGCCGGCAAGCTCTACC 60.820 66.667 34.66 12.82 0.00 3.18
1559 1600 2.907897 ATCGTGCCGGCAAGCTCTAC 62.908 60.000 33.91 18.25 0.00 2.59
1560 1601 1.388837 TATCGTGCCGGCAAGCTCTA 61.389 55.000 33.91 21.94 0.00 2.43
1561 1602 2.635229 CTATCGTGCCGGCAAGCTCT 62.635 60.000 33.91 22.87 0.00 4.09
1562 1603 2.202878 TATCGTGCCGGCAAGCTC 60.203 61.111 33.91 20.11 0.00 4.09
1563 1604 2.202932 CTATCGTGCCGGCAAGCT 60.203 61.111 33.91 27.84 0.00 3.74
1564 1605 2.996168 ATCCTATCGTGCCGGCAAGC 62.996 60.000 33.91 21.22 0.00 4.01
1565 1606 0.317160 TATCCTATCGTGCCGGCAAG 59.683 55.000 34.66 33.80 0.00 4.01
1566 1607 0.753867 TTATCCTATCGTGCCGGCAA 59.246 50.000 34.66 18.73 0.00 4.52
1567 1608 0.032952 GTTATCCTATCGTGCCGGCA 59.967 55.000 29.03 29.03 0.00 5.69
1568 1609 0.317479 AGTTATCCTATCGTGCCGGC 59.683 55.000 22.73 22.73 0.00 6.13
1569 1610 1.887198 AGAGTTATCCTATCGTGCCGG 59.113 52.381 0.00 0.00 0.00 6.13
1570 1611 2.552743 TGAGAGTTATCCTATCGTGCCG 59.447 50.000 0.00 0.00 33.97 5.69
1571 1612 4.038162 ACTTGAGAGTTATCCTATCGTGCC 59.962 45.833 0.00 0.00 33.97 5.01
1572 1613 5.189659 ACTTGAGAGTTATCCTATCGTGC 57.810 43.478 0.00 0.00 33.97 5.34
1573 1614 6.796426 TCAACTTGAGAGTTATCCTATCGTG 58.204 40.000 0.00 0.00 44.14 4.35
1587 1628 4.264302 ACCTCTTGGCTCTCAACTTGAGA 61.264 47.826 18.54 18.54 43.32 3.27
1588 1629 2.038295 ACCTCTTGGCTCTCAACTTGAG 59.962 50.000 12.02 12.02 40.47 3.02
1589 1630 2.050144 ACCTCTTGGCTCTCAACTTGA 58.950 47.619 0.00 0.00 36.63 3.02
1590 1631 2.551459 CAACCTCTTGGCTCTCAACTTG 59.449 50.000 0.00 0.00 36.63 3.16
1591 1632 2.856222 CAACCTCTTGGCTCTCAACTT 58.144 47.619 0.00 0.00 36.63 2.66
1592 1633 1.544314 GCAACCTCTTGGCTCTCAACT 60.544 52.381 0.00 0.00 36.63 3.16
1593 1634 0.877743 GCAACCTCTTGGCTCTCAAC 59.122 55.000 0.00 0.00 36.63 3.18
1594 1635 0.767375 AGCAACCTCTTGGCTCTCAA 59.233 50.000 0.00 0.00 36.63 3.02
1595 1636 1.644509 TAGCAACCTCTTGGCTCTCA 58.355 50.000 0.00 0.00 39.01 3.27
1596 1637 2.998316 ATAGCAACCTCTTGGCTCTC 57.002 50.000 0.00 0.00 39.01 3.20
1597 1638 5.046014 CCATATATAGCAACCTCTTGGCTCT 60.046 44.000 0.00 0.00 39.01 4.09
1598 1639 5.181748 CCATATATAGCAACCTCTTGGCTC 58.818 45.833 0.00 0.00 39.01 4.70
1599 1640 4.018960 CCCATATATAGCAACCTCTTGGCT 60.019 45.833 0.00 0.00 41.51 4.75
1600 1641 4.019321 TCCCATATATAGCAACCTCTTGGC 60.019 45.833 0.00 0.00 36.63 4.52
1601 1642 5.762179 TCCCATATATAGCAACCTCTTGG 57.238 43.478 0.00 0.00 39.83 3.61
1602 1643 6.715280 ACATCCCATATATAGCAACCTCTTG 58.285 40.000 0.00 0.00 0.00 3.02
1603 1644 6.959606 ACATCCCATATATAGCAACCTCTT 57.040 37.500 0.00 0.00 0.00 2.85
1604 1645 6.613271 CCTACATCCCATATATAGCAACCTCT 59.387 42.308 0.00 0.00 0.00 3.69
1605 1646 6.384305 ACCTACATCCCATATATAGCAACCTC 59.616 42.308 0.00 0.00 0.00 3.85
1606 1647 6.272320 ACCTACATCCCATATATAGCAACCT 58.728 40.000 0.00 0.00 0.00 3.50
1607 1648 6.561519 ACCTACATCCCATATATAGCAACC 57.438 41.667 0.00 0.00 0.00 3.77
1608 1649 6.823689 CCAACCTACATCCCATATATAGCAAC 59.176 42.308 0.00 0.00 0.00 4.17
1609 1650 6.069673 CCCAACCTACATCCCATATATAGCAA 60.070 42.308 0.00 0.00 0.00 3.91
1610 1651 5.428457 CCCAACCTACATCCCATATATAGCA 59.572 44.000 0.00 0.00 0.00 3.49
1611 1652 5.665812 TCCCAACCTACATCCCATATATAGC 59.334 44.000 0.00 0.00 0.00 2.97
1612 1653 7.749377 TTCCCAACCTACATCCCATATATAG 57.251 40.000 0.00 0.00 0.00 1.31
1613 1654 8.135586 AGATTCCCAACCTACATCCCATATATA 58.864 37.037 0.00 0.00 0.00 0.86
1614 1655 6.974247 AGATTCCCAACCTACATCCCATATAT 59.026 38.462 0.00 0.00 0.00 0.86
1615 1656 6.339220 AGATTCCCAACCTACATCCCATATA 58.661 40.000 0.00 0.00 0.00 0.86
1616 1657 5.173246 AGATTCCCAACCTACATCCCATAT 58.827 41.667 0.00 0.00 0.00 1.78
1617 1658 4.577096 AGATTCCCAACCTACATCCCATA 58.423 43.478 0.00 0.00 0.00 2.74
1618 1659 3.395941 GAGATTCCCAACCTACATCCCAT 59.604 47.826 0.00 0.00 0.00 4.00
1619 1660 2.777692 GAGATTCCCAACCTACATCCCA 59.222 50.000 0.00 0.00 0.00 4.37
1620 1661 2.106684 GGAGATTCCCAACCTACATCCC 59.893 54.545 0.00 0.00 0.00 3.85
1621 1662 2.777692 TGGAGATTCCCAACCTACATCC 59.222 50.000 0.00 0.00 35.03 3.51
1622 1663 4.713792 ATGGAGATTCCCAACCTACATC 57.286 45.455 0.00 0.00 40.04 3.06
1623 1664 4.351111 GGTATGGAGATTCCCAACCTACAT 59.649 45.833 8.11 0.00 40.04 2.29
1624 1665 3.714798 GGTATGGAGATTCCCAACCTACA 59.285 47.826 8.11 0.00 40.04 2.74
1625 1666 3.714798 TGGTATGGAGATTCCCAACCTAC 59.285 47.826 13.79 9.04 40.04 3.18
1626 1667 3.973973 CTGGTATGGAGATTCCCAACCTA 59.026 47.826 13.79 4.15 40.04 3.08
1627 1668 2.780010 CTGGTATGGAGATTCCCAACCT 59.220 50.000 13.79 0.00 40.04 3.50
1628 1669 2.777692 TCTGGTATGGAGATTCCCAACC 59.222 50.000 8.34 8.34 40.04 3.77
1629 1670 3.456277 AGTCTGGTATGGAGATTCCCAAC 59.544 47.826 0.00 0.00 40.04 3.77
1630 1671 3.736094 AGTCTGGTATGGAGATTCCCAA 58.264 45.455 0.00 0.00 40.04 4.12
1631 1672 3.421394 AGTCTGGTATGGAGATTCCCA 57.579 47.619 0.00 0.00 41.05 4.37
1632 1673 4.484912 ACTAGTCTGGTATGGAGATTCCC 58.515 47.826 0.00 0.00 35.03 3.97
1633 1674 6.294065 CGTAACTAGTCTGGTATGGAGATTCC 60.294 46.154 0.00 0.00 36.96 3.01
1634 1675 6.262720 ACGTAACTAGTCTGGTATGGAGATTC 59.737 42.308 0.00 0.00 0.00 2.52
1635 1676 6.127793 ACGTAACTAGTCTGGTATGGAGATT 58.872 40.000 0.00 0.00 0.00 2.40
1636 1677 5.692928 ACGTAACTAGTCTGGTATGGAGAT 58.307 41.667 0.00 0.00 0.00 2.75
1637 1678 5.108187 ACGTAACTAGTCTGGTATGGAGA 57.892 43.478 0.00 0.00 0.00 3.71
1638 1679 5.356190 TCAACGTAACTAGTCTGGTATGGAG 59.644 44.000 0.00 0.00 0.00 3.86
1639 1680 5.255687 TCAACGTAACTAGTCTGGTATGGA 58.744 41.667 0.00 0.00 0.00 3.41
1640 1681 5.571784 TCAACGTAACTAGTCTGGTATGG 57.428 43.478 0.00 0.00 0.00 2.74
1641 1682 7.432545 CAGATTCAACGTAACTAGTCTGGTATG 59.567 40.741 0.00 0.00 0.00 2.39
1642 1683 7.481642 CAGATTCAACGTAACTAGTCTGGTAT 58.518 38.462 0.00 0.00 0.00 2.73
1643 1684 6.624423 GCAGATTCAACGTAACTAGTCTGGTA 60.624 42.308 0.00 0.00 34.08 3.25
1644 1685 5.710984 CAGATTCAACGTAACTAGTCTGGT 58.289 41.667 0.00 0.00 0.00 4.00
1645 1686 4.563184 GCAGATTCAACGTAACTAGTCTGG 59.437 45.833 0.00 0.00 34.08 3.86
1646 1687 5.161358 TGCAGATTCAACGTAACTAGTCTG 58.839 41.667 0.00 0.00 35.99 3.51
1647 1688 5.386958 TGCAGATTCAACGTAACTAGTCT 57.613 39.130 0.00 0.00 0.00 3.24
1648 1689 6.198591 GGTATGCAGATTCAACGTAACTAGTC 59.801 42.308 0.00 0.00 0.00 2.59
1649 1690 6.040878 GGTATGCAGATTCAACGTAACTAGT 58.959 40.000 0.00 0.00 0.00 2.57
1650 1691 6.040247 TGGTATGCAGATTCAACGTAACTAG 58.960 40.000 0.00 0.00 0.00 2.57
1651 1692 5.968254 TGGTATGCAGATTCAACGTAACTA 58.032 37.500 0.00 0.00 0.00 2.24
1652 1693 4.827692 TGGTATGCAGATTCAACGTAACT 58.172 39.130 0.00 0.00 0.00 2.24
1653 1694 4.868171 TCTGGTATGCAGATTCAACGTAAC 59.132 41.667 0.00 0.00 0.00 2.50
1654 1695 4.868171 GTCTGGTATGCAGATTCAACGTAA 59.132 41.667 0.00 0.00 0.00 3.18
1655 1696 4.159693 AGTCTGGTATGCAGATTCAACGTA 59.840 41.667 0.00 0.00 0.00 3.57
1656 1697 3.055819 AGTCTGGTATGCAGATTCAACGT 60.056 43.478 0.00 0.00 0.00 3.99
1657 1698 3.525537 AGTCTGGTATGCAGATTCAACG 58.474 45.455 0.00 0.00 0.00 4.10
1658 1699 4.509600 GCTAGTCTGGTATGCAGATTCAAC 59.490 45.833 0.00 0.00 0.00 3.18
1659 1700 4.406972 AGCTAGTCTGGTATGCAGATTCAA 59.593 41.667 0.00 0.00 0.00 2.69
1660 1701 3.963374 AGCTAGTCTGGTATGCAGATTCA 59.037 43.478 0.00 0.00 0.00 2.57
1661 1702 4.599047 AGCTAGTCTGGTATGCAGATTC 57.401 45.455 0.00 0.00 0.00 2.52
1662 1703 5.600484 ACTTAGCTAGTCTGGTATGCAGATT 59.400 40.000 0.00 0.00 28.23 2.40
1663 1704 5.010516 CACTTAGCTAGTCTGGTATGCAGAT 59.989 44.000 0.00 0.00 33.85 2.90
1664 1705 4.339530 CACTTAGCTAGTCTGGTATGCAGA 59.660 45.833 0.00 0.00 33.85 4.26
1665 1706 4.098654 ACACTTAGCTAGTCTGGTATGCAG 59.901 45.833 0.00 0.00 33.85 4.41
1666 1707 4.023980 ACACTTAGCTAGTCTGGTATGCA 58.976 43.478 0.00 0.00 33.85 3.96
1667 1708 4.657436 ACACTTAGCTAGTCTGGTATGC 57.343 45.455 0.00 0.00 33.85 3.14
1668 1709 7.336161 AGTTACACTTAGCTAGTCTGGTATG 57.664 40.000 0.00 0.00 33.85 2.39
1669 1710 9.643735 ATTAGTTACACTTAGCTAGTCTGGTAT 57.356 33.333 0.00 0.00 33.85 2.73
1670 1711 9.471702 AATTAGTTACACTTAGCTAGTCTGGTA 57.528 33.333 0.00 0.00 33.85 3.25
1671 1712 7.957992 ATTAGTTACACTTAGCTAGTCTGGT 57.042 36.000 0.00 0.00 33.85 4.00
1672 1713 9.953697 CTAATTAGTTACACTTAGCTAGTCTGG 57.046 37.037 4.18 0.00 33.85 3.86
1673 1714 9.953697 CCTAATTAGTTACACTTAGCTAGTCTG 57.046 37.037 11.50 0.00 33.85 3.51
1674 1715 9.917887 TCCTAATTAGTTACACTTAGCTAGTCT 57.082 33.333 11.50 0.00 33.85 3.24
1679 1720 9.203163 AGACATCCTAATTAGTTACACTTAGCT 57.797 33.333 11.50 0.00 0.00 3.32
1680 1721 9.819267 AAGACATCCTAATTAGTTACACTTAGC 57.181 33.333 11.50 0.00 0.00 3.09
1729 1770 1.138661 CTGCCTCTCCTGGAAGACATC 59.861 57.143 0.00 0.00 34.60 3.06
1730 1771 1.202330 CTGCCTCTCCTGGAAGACAT 58.798 55.000 0.00 0.00 34.60 3.06
1731 1772 0.906756 CCTGCCTCTCCTGGAAGACA 60.907 60.000 0.00 0.00 34.60 3.41
1732 1773 1.904032 CCTGCCTCTCCTGGAAGAC 59.096 63.158 0.00 0.00 34.60 3.01
1733 1774 1.992277 GCCTGCCTCTCCTGGAAGA 60.992 63.158 0.00 0.00 34.60 2.87
1734 1775 0.689080 TAGCCTGCCTCTCCTGGAAG 60.689 60.000 0.00 0.00 32.39 3.46
1735 1776 0.252696 TTAGCCTGCCTCTCCTGGAA 60.253 55.000 0.00 0.00 0.00 3.53
1736 1777 0.030705 ATTAGCCTGCCTCTCCTGGA 60.031 55.000 0.00 0.00 0.00 3.86
1737 1778 1.722034 TATTAGCCTGCCTCTCCTGG 58.278 55.000 0.00 0.00 0.00 4.45
1738 1779 5.396213 GGATTATATTAGCCTGCCTCTCCTG 60.396 48.000 0.00 0.00 0.00 3.86
1739 1780 4.719273 GGATTATATTAGCCTGCCTCTCCT 59.281 45.833 0.00 0.00 0.00 3.69
1740 1781 4.141597 GGGATTATATTAGCCTGCCTCTCC 60.142 50.000 0.00 0.00 0.00 3.71
1741 1782 4.719273 AGGGATTATATTAGCCTGCCTCTC 59.281 45.833 0.00 0.00 0.00 3.20
1742 1783 4.472833 CAGGGATTATATTAGCCTGCCTCT 59.527 45.833 0.00 0.00 0.00 3.69
1743 1784 4.226168 ACAGGGATTATATTAGCCTGCCTC 59.774 45.833 0.00 0.00 0.00 4.70
1744 1785 4.179133 ACAGGGATTATATTAGCCTGCCT 58.821 43.478 0.00 0.00 0.00 4.75
1745 1786 4.226168 AGACAGGGATTATATTAGCCTGCC 59.774 45.833 0.00 0.00 0.00 4.85
1746 1787 5.428184 AGACAGGGATTATATTAGCCTGC 57.572 43.478 0.00 0.00 0.00 4.85
1747 1788 7.126421 ACCATAGACAGGGATTATATTAGCCTG 59.874 40.741 0.00 0.00 0.00 4.85
1748 1789 7.199765 ACCATAGACAGGGATTATATTAGCCT 58.800 38.462 0.00 0.00 0.00 4.58
1749 1790 7.439108 ACCATAGACAGGGATTATATTAGCC 57.561 40.000 0.00 0.00 0.00 3.93
1750 1791 9.422681 TCTACCATAGACAGGGATTATATTAGC 57.577 37.037 0.00 0.00 0.00 3.09
1752 1793 9.422681 GCTCTACCATAGACAGGGATTATATTA 57.577 37.037 0.00 0.00 0.00 0.98
1753 1794 8.125733 AGCTCTACCATAGACAGGGATTATATT 58.874 37.037 0.00 0.00 0.00 1.28
1754 1795 7.657306 AGCTCTACCATAGACAGGGATTATAT 58.343 38.462 0.00 0.00 0.00 0.86
1755 1796 7.045693 AGCTCTACCATAGACAGGGATTATA 57.954 40.000 0.00 0.00 0.00 0.98
1865 1913 3.936453 TGGTATGCAGATTCAACGTAACC 59.064 43.478 0.00 0.00 0.00 2.85
1980 2028 6.931281 TGAGGAAGAATATACTTACAGCATGC 59.069 38.462 10.51 10.51 42.53 4.06
1995 2043 5.352569 CGAAGTAGCAACAATGAGGAAGAAT 59.647 40.000 0.00 0.00 0.00 2.40
2070 2118 0.605589 CGAAGGCACTGAGAAGACCT 59.394 55.000 0.00 0.00 40.86 3.85
2279 2327 8.288913 ACAATGGTATTACTTTTGCAAAAATGC 58.711 29.630 23.92 17.36 0.00 3.56
2317 2365 3.451141 TTGTGCCAACAAGAATTCACC 57.549 42.857 8.44 0.00 41.41 4.02
2421 2470 3.367703 GCATCACAGCCTGCAAATTAAGT 60.368 43.478 0.00 0.00 38.28 2.24
2682 2731 3.857157 TTCCTAGCTGAAACCAACTGT 57.143 42.857 0.00 0.00 0.00 3.55
2811 2860 1.187087 AGAAGGCGAGACCGAGAAAT 58.813 50.000 0.00 0.00 46.52 2.17
2859 2908 5.883685 TCATATTTCCATGACTCAGCTCT 57.116 39.130 0.00 0.00 29.93 4.09
3011 3060 8.608598 AGAAGTATACTCTAGGAAGGATAGGTC 58.391 40.741 5.70 0.00 0.00 3.85
3024 3073 5.826208 TGCCGTGAATGAGAAGTATACTCTA 59.174 40.000 5.70 0.00 35.66 2.43
3032 3081 2.479566 ACATGCCGTGAATGAGAAGT 57.520 45.000 0.00 0.00 0.00 3.01
3046 3095 0.299895 CTCTGCGTCGATCAACATGC 59.700 55.000 0.00 0.00 0.00 4.06
3071 3120 0.107703 CGGCTGACAGAATAAGGCCA 60.108 55.000 5.01 0.00 39.53 5.36
3086 3135 3.958147 CTTGTCCACGATGGCGGCT 62.958 63.158 11.43 0.00 43.17 5.52
3173 3222 0.614697 TCAGGGATTCCGTCTGAGCA 60.615 55.000 7.38 0.00 38.33 4.26
3241 3290 1.878522 GCGTAGATGTGCAGGACGG 60.879 63.158 0.00 0.00 34.19 4.79
3263 3312 2.945440 GCTATGGCATGGACAAACCTCA 60.945 50.000 15.66 0.00 37.74 3.86
3287 3336 5.923204 AGAGATTTAGCAGAATACAGGGTG 58.077 41.667 0.00 0.00 0.00 4.61
3290 3339 8.180267 CACAAAAGAGATTTAGCAGAATACAGG 58.820 37.037 0.00 0.00 0.00 4.00
3316 3369 1.873355 GCGACGGTGTGAGACGTTTC 61.873 60.000 0.00 0.00 44.24 2.78
3371 3439 4.003788 CTCGCGAACCCCACACCT 62.004 66.667 11.33 0.00 0.00 4.00
3374 3442 4.373116 GAGCTCGCGAACCCCACA 62.373 66.667 11.33 0.00 0.00 4.17
3566 3634 0.190069 TGTCAGGTATCCCGCCCTAT 59.810 55.000 0.00 0.00 35.12 2.57
3570 3638 0.468226 TCATTGTCAGGTATCCCGCC 59.532 55.000 0.00 0.00 35.12 6.13
3576 3645 3.379372 GCAGCAATGTCATTGTCAGGTAT 59.621 43.478 23.27 2.78 42.20 2.73
3577 3646 2.749076 GCAGCAATGTCATTGTCAGGTA 59.251 45.455 23.27 0.00 42.20 3.08
3620 3689 4.808364 GTGTATCTGGAGAGTCAAATGCTC 59.192 45.833 0.00 0.00 0.00 4.26
3621 3690 4.223700 TGTGTATCTGGAGAGTCAAATGCT 59.776 41.667 0.00 0.00 0.00 3.79
3627 3696 2.043115 ACCCTGTGTATCTGGAGAGTCA 59.957 50.000 0.00 0.00 37.33 3.41
3633 3702 4.228895 TCTGTAGTACCCTGTGTATCTGGA 59.771 45.833 0.00 0.00 37.33 3.86
3634 3703 4.533815 TCTGTAGTACCCTGTGTATCTGG 58.466 47.826 0.00 0.00 35.32 3.86
3635 3704 4.036971 GCTCTGTAGTACCCTGTGTATCTG 59.963 50.000 0.00 0.00 0.00 2.90
3647 3716 1.227002 GGCGCCAGCTCTGTAGTAC 60.227 63.158 24.80 0.00 44.37 2.73
3649 3718 2.997315 TGGCGCCAGCTCTGTAGT 60.997 61.111 29.03 0.00 44.37 2.73
3696 3765 4.283212 CAGAGGGAAACAATGGCCTAAAAA 59.717 41.667 3.32 0.00 0.00 1.94
3732 3801 9.094578 TCCTTCCCTTTCTGTTCTCTATATATG 57.905 37.037 0.00 0.00 0.00 1.78
3738 3807 4.753186 ACTCCTTCCCTTTCTGTTCTCTA 58.247 43.478 0.00 0.00 0.00 2.43
3745 3814 4.041691 TCACCTTTACTCCTTCCCTTTCTG 59.958 45.833 0.00 0.00 0.00 3.02
3765 3834 3.081804 ACATCCAGAAACCCGAAATCAC 58.918 45.455 0.00 0.00 0.00 3.06
3774 3843 9.353999 GTAATTCAACAATAACATCCAGAAACC 57.646 33.333 0.00 0.00 0.00 3.27
3776 3845 8.527810 GGGTAATTCAACAATAACATCCAGAAA 58.472 33.333 0.00 0.00 0.00 2.52
3788 3857 6.739331 TGAAAACCAGGGTAATTCAACAAT 57.261 33.333 13.94 0.00 33.87 2.71
3831 3900 7.390027 CCCCTCGAAGAAGTCATAATATCATT 58.610 38.462 0.00 0.00 34.09 2.57
3840 3909 1.007238 TCTCCCCCTCGAAGAAGTCAT 59.993 52.381 0.00 0.00 34.09 3.06
3847 3916 2.548920 GCATTGTATCTCCCCCTCGAAG 60.549 54.545 0.00 0.00 0.00 3.79
3866 3935 7.566760 AAACGGAAATTACATATCATCAGCA 57.433 32.000 0.00 0.00 0.00 4.41
3873 3942 5.458779 GCAGGCAAAACGGAAATTACATATC 59.541 40.000 0.00 0.00 0.00 1.63
3876 3945 3.584834 GCAGGCAAAACGGAAATTACAT 58.415 40.909 0.00 0.00 0.00 2.29
3879 3948 1.667467 GCGCAGGCAAAACGGAAATTA 60.667 47.619 0.30 0.00 39.62 1.40
3896 3965 2.796593 GGATAAAATCAAATGCAGGCGC 59.203 45.455 0.00 0.00 39.24 6.53
3897 3966 4.044336 TGGATAAAATCAAATGCAGGCG 57.956 40.909 0.00 0.00 0.00 5.52
3898 3967 5.065090 GGTTTGGATAAAATCAAATGCAGGC 59.935 40.000 0.00 0.00 35.66 4.85
3899 3968 5.585844 GGGTTTGGATAAAATCAAATGCAGG 59.414 40.000 0.00 0.00 35.66 4.85
3909 3980 3.790126 AGCAGGTGGGTTTGGATAAAAT 58.210 40.909 0.00 0.00 0.00 1.82
3914 3985 0.482446 TGAAGCAGGTGGGTTTGGAT 59.518 50.000 0.00 0.00 37.33 3.41
3915 3986 0.482446 ATGAAGCAGGTGGGTTTGGA 59.518 50.000 0.00 0.00 37.33 3.53
3916 3987 0.890683 GATGAAGCAGGTGGGTTTGG 59.109 55.000 0.00 0.00 37.33 3.28
3918 3989 2.619074 GCTAGATGAAGCAGGTGGGTTT 60.619 50.000 0.00 0.00 42.30 3.27
3921 3992 3.393472 GCTAGATGAAGCAGGTGGG 57.607 57.895 0.00 0.00 42.30 4.61
3952 4027 4.527427 TGATTGATGGACCAAAATGCAGAA 59.473 37.500 9.82 0.00 0.00 3.02
3963 4038 5.474876 GGAGGAATACAATGATTGATGGACC 59.525 44.000 12.80 8.28 0.00 4.46
4000 4078 7.101652 TGTGTGCACAAATTAAACTAAGGAA 57.898 32.000 23.59 0.00 38.56 3.36
4001 4079 6.701145 TGTGTGCACAAATTAAACTAAGGA 57.299 33.333 23.59 0.00 38.56 3.36
4022 4100 4.586841 GGTAGGAGTCAGAGAGCATATTGT 59.413 45.833 0.00 0.00 0.00 2.71
4341 4420 8.807581 GCAACATTTTTAGCCATGTTAGTAATC 58.192 33.333 0.00 0.00 40.85 1.75
4342 4421 8.310382 TGCAACATTTTTAGCCATGTTAGTAAT 58.690 29.630 0.00 0.00 40.85 1.89
4344 4423 7.220741 TGCAACATTTTTAGCCATGTTAGTA 57.779 32.000 0.00 0.00 40.85 1.82
4345 4424 6.095432 TGCAACATTTTTAGCCATGTTAGT 57.905 33.333 0.00 0.00 40.85 2.24
4346 4425 7.599630 AATGCAACATTTTTAGCCATGTTAG 57.400 32.000 0.00 0.00 40.85 2.34
4347 4426 7.877097 AGAAATGCAACATTTTTAGCCATGTTA 59.123 29.630 6.97 0.00 40.85 2.41
4348 4427 6.711645 AGAAATGCAACATTTTTAGCCATGTT 59.288 30.769 6.97 0.00 43.06 2.71
4350 4429 6.730960 AGAAATGCAACATTTTTAGCCATG 57.269 33.333 6.97 0.00 0.00 3.66
4352 4431 6.753180 TGTAGAAATGCAACATTTTTAGCCA 58.247 32.000 6.97 0.17 0.00 4.75
4353 4432 6.868339 ACTGTAGAAATGCAACATTTTTAGCC 59.132 34.615 6.97 0.00 0.00 3.93
4354 4433 7.873739 ACTGTAGAAATGCAACATTTTTAGC 57.126 32.000 6.97 3.05 0.00 3.09
4356 4435 8.792633 AGCTACTGTAGAAATGCAACATTTTTA 58.207 29.630 18.64 3.59 0.00 1.52
4357 4436 7.661040 AGCTACTGTAGAAATGCAACATTTTT 58.339 30.769 18.64 4.49 0.00 1.94
4492 4581 4.398319 ACAAAAGGTAACCCAGATCAGTG 58.602 43.478 0.00 0.00 37.17 3.66
4493 4582 4.724279 ACAAAAGGTAACCCAGATCAGT 57.276 40.909 0.00 0.00 37.17 3.41
4494 4583 6.414732 TGATACAAAAGGTAACCCAGATCAG 58.585 40.000 0.00 0.00 35.14 2.90
4496 4585 7.881775 ATTGATACAAAAGGTAACCCAGATC 57.118 36.000 0.00 0.00 35.14 2.75
4502 4591 6.209788 TGGTCCAATTGATACAAAAGGTAACC 59.790 38.462 7.12 0.00 35.14 2.85
4504 4593 8.962679 GTATGGTCCAATTGATACAAAAGGTAA 58.037 33.333 7.12 0.00 35.14 2.85
4507 4596 7.403312 TGTATGGTCCAATTGATACAAAAGG 57.597 36.000 7.12 0.00 30.23 3.11
4528 4617 1.248785 GGCGTCTCACCTGACCTGTA 61.249 60.000 0.00 0.00 33.70 2.74
4529 4618 2.574955 GGCGTCTCACCTGACCTGT 61.575 63.158 0.00 0.00 33.70 4.00
4530 4619 2.262915 GGCGTCTCACCTGACCTG 59.737 66.667 0.00 0.00 33.70 4.00
4531 4620 2.997897 GGGCGTCTCACCTGACCT 60.998 66.667 0.00 0.00 33.70 3.85
4532 4621 4.083862 GGGGCGTCTCACCTGACC 62.084 72.222 0.00 0.00 33.70 4.02
4533 4622 2.660064 ATGGGGCGTCTCACCTGAC 61.660 63.158 0.00 0.00 0.00 3.51
4534 4623 2.284625 ATGGGGCGTCTCACCTGA 60.285 61.111 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.