Multiple sequence alignment - TraesCS5A01G363200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G363200 chr5A 100.000 5968 0 0 1 5968 563838556 563844523 0.000000e+00 11021.0
1 TraesCS5A01G363200 chr5A 81.424 576 89 17 5406 5968 497962819 497962249 7.050000e-124 455.0
2 TraesCS5A01G363200 chr5D 94.786 1822 76 7 3593 5406 446278118 446279928 0.000000e+00 2820.0
3 TraesCS5A01G363200 chr5D 88.900 1027 71 11 2571 3564 446276837 446277853 0.000000e+00 1225.0
4 TraesCS5A01G363200 chr5D 91.686 842 52 14 1089 1926 446275511 446276338 0.000000e+00 1151.0
5 TraesCS5A01G363200 chr5D 92.780 554 19 9 553 1091 446274926 446275473 0.000000e+00 782.0
6 TraesCS5A01G363200 chr5D 93.157 453 24 3 1 449 446274254 446274703 0.000000e+00 658.0
7 TraesCS5A01G363200 chr5D 92.754 414 25 3 1925 2336 446276429 446276839 1.430000e-165 593.0
8 TraesCS5A01G363200 chr5D 82.211 579 89 8 5404 5968 241829394 241829972 2.500000e-133 486.0
9 TraesCS5A01G363200 chr5D 90.272 257 23 2 2318 2573 556772957 556772702 9.580000e-88 335.0
10 TraesCS5A01G363200 chr4B 83.231 1145 163 25 3598 4725 6537900 6536768 0.000000e+00 1024.0
11 TraesCS5A01G363200 chr4B 82.317 1148 168 28 3598 4725 6638478 6637346 0.000000e+00 963.0
12 TraesCS5A01G363200 chr4B 79.292 1101 135 52 593 1669 6541619 6540588 0.000000e+00 684.0
13 TraesCS5A01G363200 chr4B 77.971 1094 152 53 593 1669 6642348 6641327 2.380000e-168 603.0
14 TraesCS5A01G363200 chr4B 83.713 571 80 10 5406 5968 635015193 635014628 1.470000e-145 527.0
15 TraesCS5A01G363200 chr4B 81.366 322 51 8 4754 5074 6637095 6636782 2.760000e-63 254.0
16 TraesCS5A01G363200 chr4B 83.459 266 33 8 2570 2832 6539564 6539307 2.780000e-58 237.0
17 TraesCS5A01G363200 chr7D 80.035 1132 183 37 3593 4706 32380003 32378897 0.000000e+00 798.0
18 TraesCS5A01G363200 chr7D 92.213 244 18 1 2330 2573 176959310 176959068 1.590000e-90 344.0
19 TraesCS5A01G363200 chr7D 92.469 239 18 0 2334 2572 93733545 93733307 5.730000e-90 342.0
20 TraesCS5A01G363200 chr2D 86.559 558 67 6 5407 5960 6300324 6299771 5.110000e-170 608.0
21 TraesCS5A01G363200 chr2D 92.469 239 18 0 2334 2572 444861054 444860816 5.730000e-90 342.0
22 TraesCS5A01G363200 chr3B 85.813 578 61 10 5403 5968 21175069 21174501 1.430000e-165 593.0
23 TraesCS5A01G363200 chr4A 78.445 1016 140 35 2570 3565 599496359 599495403 1.850000e-164 590.0
24 TraesCS5A01G363200 chr4A 80.488 123 20 3 4605 4725 599487862 599487742 2.290000e-14 91.6
25 TraesCS5A01G363200 chr4D 86.729 535 52 10 5406 5937 9296405 9295887 1.440000e-160 577.0
26 TraesCS5A01G363200 chr4D 92.050 239 19 0 2334 2572 294260975 294260737 2.660000e-88 337.0
27 TraesCS5A01G363200 chr3D 85.017 574 57 11 5406 5968 94491941 94491386 1.880000e-154 556.0
28 TraesCS5A01G363200 chr3D 92.887 239 17 0 2334 2572 356407406 356407168 1.230000e-91 348.0
29 TraesCS5A01G363200 chr5B 83.598 567 81 6 5404 5968 597305623 597305067 6.850000e-144 521.0
30 TraesCS5A01G363200 chr6A 82.156 538 89 5 5404 5938 560667450 560667983 7.050000e-124 455.0
31 TraesCS5A01G363200 chr7B 93.724 239 15 0 2334 2572 414077181 414077419 5.690000e-95 359.0
32 TraesCS5A01G363200 chr2B 92.469 239 18 0 2334 2572 557731908 557731670 5.730000e-90 342.0
33 TraesCS5A01G363200 chr1D 92.050 239 19 0 2334 2572 235712982 235713220 2.660000e-88 337.0
34 TraesCS5A01G363200 chr2A 83.588 262 27 10 5403 5659 445335748 445335498 1.290000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G363200 chr5A 563838556 563844523 5967 False 11021.000000 11021 100.000000 1 5968 1 chr5A.!!$F1 5967
1 TraesCS5A01G363200 chr5A 497962249 497962819 570 True 455.000000 455 81.424000 5406 5968 1 chr5A.!!$R1 562
2 TraesCS5A01G363200 chr5D 446274254 446279928 5674 False 1204.833333 2820 92.343833 1 5406 6 chr5D.!!$F2 5405
3 TraesCS5A01G363200 chr5D 241829394 241829972 578 False 486.000000 486 82.211000 5404 5968 1 chr5D.!!$F1 564
4 TraesCS5A01G363200 chr4B 6536768 6541619 4851 True 648.333333 1024 81.994000 593 4725 3 chr4B.!!$R2 4132
5 TraesCS5A01G363200 chr4B 6636782 6642348 5566 True 606.666667 963 80.551333 593 5074 3 chr4B.!!$R3 4481
6 TraesCS5A01G363200 chr4B 635014628 635015193 565 True 527.000000 527 83.713000 5406 5968 1 chr4B.!!$R1 562
7 TraesCS5A01G363200 chr7D 32378897 32380003 1106 True 798.000000 798 80.035000 3593 4706 1 chr7D.!!$R1 1113
8 TraesCS5A01G363200 chr2D 6299771 6300324 553 True 608.000000 608 86.559000 5407 5960 1 chr2D.!!$R1 553
9 TraesCS5A01G363200 chr3B 21174501 21175069 568 True 593.000000 593 85.813000 5403 5968 1 chr3B.!!$R1 565
10 TraesCS5A01G363200 chr4A 599495403 599496359 956 True 590.000000 590 78.445000 2570 3565 1 chr4A.!!$R2 995
11 TraesCS5A01G363200 chr4D 9295887 9296405 518 True 577.000000 577 86.729000 5406 5937 1 chr4D.!!$R1 531
12 TraesCS5A01G363200 chr3D 94491386 94491941 555 True 556.000000 556 85.017000 5406 5968 1 chr3D.!!$R1 562
13 TraesCS5A01G363200 chr5B 597305067 597305623 556 True 521.000000 521 83.598000 5404 5968 1 chr5B.!!$R1 564
14 TraesCS5A01G363200 chr6A 560667450 560667983 533 False 455.000000 455 82.156000 5404 5938 1 chr6A.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1133 0.032403 TTGTTAGCACGGTAGCGTGT 59.968 50.0 38.26 28.75 41.46 4.49 F
1366 1564 0.102844 GTATAGTACGTTGGGCGCCA 59.897 55.0 30.85 12.04 46.11 5.69 F
2333 3351 0.108377 TCGATGCGTGTTGCCTACAT 60.108 50.0 0.00 0.00 45.60 2.29 F
2363 3381 0.631753 TCTTGGTTTGTTGGTCCCCA 59.368 50.0 0.00 0.00 0.00 4.96 F
3826 5596 1.009829 GGCGAGGTAAGCTCAACATG 58.990 55.0 0.00 0.00 34.52 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 3609 0.322816 AGCACCACAACCTGCTATGG 60.323 55.000 0.00 0.00 42.07 2.74 R
2609 3627 1.961277 GCGTGTTGTGTCCTCCCAG 60.961 63.158 0.00 0.00 0.00 4.45 R
3556 4642 0.310543 TGTTCTTGCGAATGTGGCAC 59.689 50.000 11.55 11.55 40.71 5.01 R
4294 6084 0.546122 CACGGGGATGGATGGAGAAA 59.454 55.000 0.00 0.00 0.00 2.52 R
5800 7866 0.181350 GGGATGAAGGGTCGCAGATT 59.819 55.000 0.00 0.00 40.67 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.175202 GTATTGTGCATTTGGGACCCA 58.825 47.619 9.95 9.95 36.96 4.51
46 47 1.076549 GCATTTGGGACCCACCTCA 59.923 57.895 14.59 0.00 38.98 3.86
49 50 0.631212 ATTTGGGACCCACCTCATCC 59.369 55.000 14.59 0.00 38.98 3.51
62 63 2.106166 ACCTCATCCAATGCTGATCTCC 59.894 50.000 0.00 0.00 0.00 3.71
119 120 3.976701 AAGTTGAGGATGCGGCGGG 62.977 63.158 9.78 0.00 0.00 6.13
164 165 2.478872 TAGCTGGCTAAGGATGGACT 57.521 50.000 0.00 0.00 0.00 3.85
239 240 3.851098 CTTCTTTCTGAAGGTACTCGGG 58.149 50.000 0.00 0.00 46.25 5.14
240 241 2.176889 TCTTTCTGAAGGTACTCGGGG 58.823 52.381 0.00 0.00 38.49 5.73
241 242 0.611714 TTTCTGAAGGTACTCGGGGC 59.388 55.000 0.00 0.00 38.49 5.80
286 291 4.857509 TGTATAAAACAACTGGCCAACC 57.142 40.909 7.01 0.00 34.29 3.77
373 378 7.148641 ACTGGTCTAGAATGAGTATTATTGCG 58.851 38.462 0.00 0.00 0.00 4.85
379 384 9.817809 TCTAGAATGAGTATTATTGCGAAAAGT 57.182 29.630 0.00 0.00 0.00 2.66
397 402 7.584987 CGAAAAGTGGTTCAATTCATACTTCT 58.415 34.615 0.00 0.00 0.00 2.85
537 632 5.602561 GGAGTGCCCCCTTTGATAAATAAAT 59.397 40.000 0.00 0.00 0.00 1.40
540 635 8.616799 AGTGCCCCCTTTGATAAATAAATAAA 57.383 30.769 0.00 0.00 0.00 1.40
541 636 9.052365 AGTGCCCCCTTTGATAAATAAATAAAA 57.948 29.630 0.00 0.00 0.00 1.52
566 687 1.131883 TCGACTAGAGTTGCCGTTAGC 59.868 52.381 0.00 0.00 44.14 3.09
696 824 1.831736 GCCTAGGACTAAGACAGCCAA 59.168 52.381 14.75 0.00 0.00 4.52
784 912 0.825010 ACAGCTCAAGCCCAACCAAG 60.825 55.000 0.00 0.00 43.38 3.61
790 918 0.171007 CAAGCCCAACCAAGTATGCG 59.829 55.000 0.00 0.00 0.00 4.73
791 919 0.037590 AAGCCCAACCAAGTATGCGA 59.962 50.000 0.00 0.00 0.00 5.10
802 932 2.872245 CAAGTATGCGAATACAGGTGGG 59.128 50.000 16.02 0.00 0.00 4.61
852 982 1.312815 GCACCCACATGATCTAAGCC 58.687 55.000 0.00 0.00 0.00 4.35
854 984 2.292267 CACCCACATGATCTAAGCCAC 58.708 52.381 0.00 0.00 0.00 5.01
862 992 0.463833 GATCTAAGCCACCCCCAACG 60.464 60.000 0.00 0.00 0.00 4.10
877 1007 2.468670 AACGCAACGCAAGCACAGA 61.469 52.632 0.00 0.00 45.62 3.41
912 1042 0.608640 CCGGCTTGACTCCACTACTT 59.391 55.000 0.00 0.00 0.00 2.24
989 1133 0.032403 TTGTTAGCACGGTAGCGTGT 59.968 50.000 38.26 28.75 41.46 4.49
1095 1240 5.905181 CGGAAAATGTACGCAAATACCATAC 59.095 40.000 0.00 0.00 0.00 2.39
1112 1295 2.933495 TACATATACATCGCGAGCCC 57.067 50.000 16.66 0.00 0.00 5.19
1119 1302 1.144057 CATCGCGAGCCCTTACCTT 59.856 57.895 16.66 0.00 0.00 3.50
1122 1305 0.387929 TCGCGAGCCCTTACCTTATG 59.612 55.000 3.71 0.00 0.00 1.90
1125 1308 1.543429 GCGAGCCCTTACCTTATGCAT 60.543 52.381 3.79 3.79 0.00 3.96
1131 1314 6.630413 CGAGCCCTTACCTTATGCATATATGT 60.630 42.308 14.14 7.75 0.00 2.29
1133 1316 7.565680 AGCCCTTACCTTATGCATATATGTAC 58.434 38.462 14.14 0.00 0.00 2.90
1134 1317 7.403231 AGCCCTTACCTTATGCATATATGTACT 59.597 37.037 14.14 3.43 0.00 2.73
1135 1318 8.701895 GCCCTTACCTTATGCATATATGTACTA 58.298 37.037 14.14 1.28 0.00 1.82
1281 1464 0.987294 CTGACCCAGGTGAAGTGGAT 59.013 55.000 0.00 0.00 37.23 3.41
1300 1490 3.535860 GATATGCGTCATTGCTTTCGAC 58.464 45.455 0.00 0.00 35.36 4.20
1304 1494 0.865111 CGTCATTGCTTTCGACCACA 59.135 50.000 0.00 0.00 0.00 4.17
1305 1495 1.398451 CGTCATTGCTTTCGACCACAC 60.398 52.381 0.00 0.00 0.00 3.82
1312 1502 1.676014 GCTTTCGACCACACCAGCTAT 60.676 52.381 0.00 0.00 0.00 2.97
1327 1523 3.055602 CCAGCTATATGCAGTGCTATGGA 60.056 47.826 17.60 0.00 45.94 3.41
1330 1526 4.224594 AGCTATATGCAGTGCTATGGACAT 59.775 41.667 17.60 1.69 45.94 3.06
1345 1543 6.408206 GCTATGGACATGGTCTAACCTTTAGT 60.408 42.308 0.00 0.00 39.58 2.24
1361 1559 6.633856 ACCTTTAGTTGTATAGTACGTTGGG 58.366 40.000 0.00 0.00 0.00 4.12
1362 1560 5.521372 CCTTTAGTTGTATAGTACGTTGGGC 59.479 44.000 0.00 0.00 0.00 5.36
1366 1564 0.102844 GTATAGTACGTTGGGCGCCA 59.897 55.000 30.85 12.04 46.11 5.69
1373 1571 1.303091 ACGTTGGGCGCCATCTTTAC 61.303 55.000 30.85 14.41 46.11 2.01
1380 1578 1.810151 GGCGCCATCTTTACAAACTCA 59.190 47.619 24.80 0.00 0.00 3.41
1397 1595 2.040813 ACTCATGGCACTGGAAACTCAT 59.959 45.455 0.00 0.00 0.00 2.90
1414 1612 4.062991 ACTCATTTGGTTCGTCTTGGTAC 58.937 43.478 0.00 0.00 0.00 3.34
1515 1713 7.780064 TGATCAAAGAGAAGATAGTTCCTCTG 58.220 38.462 0.00 0.00 36.26 3.35
1518 1716 2.955660 AGAGAAGATAGTTCCTCTGGCG 59.044 50.000 0.00 0.00 34.96 5.69
1559 1757 4.803426 CGGGCTCGACAGCTCCAC 62.803 72.222 0.00 0.00 44.35 4.02
1649 1847 9.906660 TGAAAGGTACAACAATTGCTAATTAAG 57.093 29.630 5.05 0.00 0.00 1.85
1744 1943 5.943349 ATTGCAGATTTTTCATCATGGGA 57.057 34.783 0.00 0.00 0.00 4.37
1749 1948 5.579511 GCAGATTTTTCATCATGGGAACTTG 59.420 40.000 0.00 0.00 36.86 3.16
1808 2008 3.780294 TGAGTTGGGGAGCATGTAATAGT 59.220 43.478 0.00 0.00 0.00 2.12
1819 2019 5.788450 AGCATGTAATAGTCCAGTATCAGC 58.212 41.667 0.00 0.00 0.00 4.26
1821 2021 5.564848 GCATGTAATAGTCCAGTATCAGCGA 60.565 44.000 0.00 0.00 0.00 4.93
1883 2083 7.946381 ACTGAATTTTCTTCCCCTAGAAATC 57.054 36.000 0.00 0.00 42.11 2.17
1885 2085 7.613411 ACTGAATTTTCTTCCCCTAGAAATCAG 59.387 37.037 18.73 18.73 45.65 2.90
1956 2250 3.815401 ACTGACCAAACTACAAGTCATGC 59.185 43.478 0.00 0.00 38.49 4.06
1965 2259 4.844267 ACTACAAGTCATGCGTTTCAAAC 58.156 39.130 0.00 0.00 0.00 2.93
1967 2261 5.756347 ACTACAAGTCATGCGTTTCAAACTA 59.244 36.000 0.00 0.00 0.00 2.24
1973 2267 8.417176 CAAGTCATGCGTTTCAAACTAATTTAC 58.583 33.333 0.00 0.00 0.00 2.01
2016 2310 5.703730 TTTAACCTGTATGTTAGAGGGGG 57.296 43.478 3.14 0.00 43.18 5.40
2128 2442 7.467623 ACGAAAGATGTAAATCTTGCTGAATC 58.532 34.615 8.98 1.41 40.47 2.52
2184 2507 8.594881 ACAGAAATCGTGGAGATAATATCAAC 57.405 34.615 2.84 0.00 38.98 3.18
2186 2509 9.212641 CAGAAATCGTGGAGATAATATCAACAT 57.787 33.333 2.84 0.00 38.98 2.71
2223 2546 2.692041 CAGATCTGATTTTTGGGGGAGC 59.308 50.000 18.34 0.00 0.00 4.70
2227 2550 1.547372 CTGATTTTTGGGGGAGCACAG 59.453 52.381 0.00 0.00 0.00 3.66
2236 2559 1.598130 GGGAGCACAGCGTTGAACT 60.598 57.895 6.16 2.07 0.00 3.01
2279 2746 5.004726 GTGAACACTGTTGCAAATCTTCAAC 59.995 40.000 0.00 0.00 41.99 3.18
2319 3337 8.713737 ATCCATATTCACATGATAAGTCGATG 57.286 34.615 0.00 0.00 0.00 3.84
2332 3350 1.011968 GTCGATGCGTGTTGCCTACA 61.012 55.000 0.00 0.00 45.60 2.74
2333 3351 0.108377 TCGATGCGTGTTGCCTACAT 60.108 50.000 0.00 0.00 45.60 2.29
2334 3352 1.135333 TCGATGCGTGTTGCCTACATA 59.865 47.619 0.00 0.00 45.60 2.29
2335 3353 1.257936 CGATGCGTGTTGCCTACATAC 59.742 52.381 0.00 0.00 45.60 2.39
2336 3354 2.550978 GATGCGTGTTGCCTACATACT 58.449 47.619 0.00 0.00 45.60 2.12
2337 3355 3.713288 GATGCGTGTTGCCTACATACTA 58.287 45.455 0.00 0.00 45.60 1.82
2338 3356 2.883574 TGCGTGTTGCCTACATACTAC 58.116 47.619 0.00 0.00 45.60 2.73
2339 3357 2.199236 GCGTGTTGCCTACATACTACC 58.801 52.381 0.00 0.00 39.39 3.18
2340 3358 2.159142 GCGTGTTGCCTACATACTACCT 60.159 50.000 0.00 0.00 39.39 3.08
2341 3359 3.703420 CGTGTTGCCTACATACTACCTC 58.297 50.000 0.00 0.00 39.39 3.85
2342 3360 3.490419 CGTGTTGCCTACATACTACCTCC 60.490 52.174 0.00 0.00 39.39 4.30
2343 3361 2.691526 TGTTGCCTACATACTACCTCCG 59.308 50.000 0.00 0.00 0.00 4.63
2344 3362 2.692041 GTTGCCTACATACTACCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
2345 3363 2.579873 TGCCTACATACTACCTCCGTC 58.420 52.381 0.00 0.00 0.00 4.79
2346 3364 2.174210 TGCCTACATACTACCTCCGTCT 59.826 50.000 0.00 0.00 0.00 4.18
2347 3365 3.220940 GCCTACATACTACCTCCGTCTT 58.779 50.000 0.00 0.00 0.00 3.01
2348 3366 3.004524 GCCTACATACTACCTCCGTCTTG 59.995 52.174 0.00 0.00 0.00 3.02
2349 3367 3.568853 CCTACATACTACCTCCGTCTTGG 59.431 52.174 0.00 0.00 40.09 3.61
2350 3368 3.097342 ACATACTACCTCCGTCTTGGT 57.903 47.619 0.00 0.00 39.52 3.67
2351 3369 3.438183 ACATACTACCTCCGTCTTGGTT 58.562 45.455 0.00 0.00 39.52 3.67
2352 3370 3.836562 ACATACTACCTCCGTCTTGGTTT 59.163 43.478 0.00 0.00 39.52 3.27
2353 3371 2.833631 ACTACCTCCGTCTTGGTTTG 57.166 50.000 0.00 0.00 39.52 2.93
2354 3372 2.044758 ACTACCTCCGTCTTGGTTTGT 58.955 47.619 0.00 0.00 39.52 2.83
2355 3373 2.436911 ACTACCTCCGTCTTGGTTTGTT 59.563 45.455 0.00 0.00 39.52 2.83
2356 3374 1.675552 ACCTCCGTCTTGGTTTGTTG 58.324 50.000 0.00 0.00 39.52 3.33
2357 3375 0.951558 CCTCCGTCTTGGTTTGTTGG 59.048 55.000 0.00 0.00 39.52 3.77
2358 3376 1.675552 CTCCGTCTTGGTTTGTTGGT 58.324 50.000 0.00 0.00 39.52 3.67
2359 3377 1.602377 CTCCGTCTTGGTTTGTTGGTC 59.398 52.381 0.00 0.00 39.52 4.02
2360 3378 0.666374 CCGTCTTGGTTTGTTGGTCC 59.334 55.000 0.00 0.00 0.00 4.46
2361 3379 0.666374 CGTCTTGGTTTGTTGGTCCC 59.334 55.000 0.00 0.00 0.00 4.46
2362 3380 1.037493 GTCTTGGTTTGTTGGTCCCC 58.963 55.000 0.00 0.00 0.00 4.81
2363 3381 0.631753 TCTTGGTTTGTTGGTCCCCA 59.368 50.000 0.00 0.00 0.00 4.96
2364 3382 1.219213 TCTTGGTTTGTTGGTCCCCAT 59.781 47.619 0.00 0.00 31.53 4.00
2365 3383 2.046292 CTTGGTTTGTTGGTCCCCATT 58.954 47.619 0.00 0.00 31.53 3.16
2366 3384 1.418334 TGGTTTGTTGGTCCCCATTG 58.582 50.000 0.00 0.00 31.53 2.82
2367 3385 1.343478 TGGTTTGTTGGTCCCCATTGT 60.343 47.619 0.00 0.00 31.53 2.71
2368 3386 2.091278 TGGTTTGTTGGTCCCCATTGTA 60.091 45.455 0.00 0.00 31.53 2.41
2369 3387 3.169908 GGTTTGTTGGTCCCCATTGTAT 58.830 45.455 0.00 0.00 31.53 2.29
2370 3388 3.580895 GGTTTGTTGGTCCCCATTGTATT 59.419 43.478 0.00 0.00 31.53 1.89
2371 3389 4.041075 GGTTTGTTGGTCCCCATTGTATTT 59.959 41.667 0.00 0.00 31.53 1.40
2372 3390 5.234752 GTTTGTTGGTCCCCATTGTATTTC 58.765 41.667 0.00 0.00 31.53 2.17
2373 3391 3.085533 TGTTGGTCCCCATTGTATTTCG 58.914 45.455 0.00 0.00 31.53 3.46
2374 3392 3.086282 GTTGGTCCCCATTGTATTTCGT 58.914 45.455 0.00 0.00 31.53 3.85
2375 3393 2.717390 TGGTCCCCATTGTATTTCGTG 58.283 47.619 0.00 0.00 0.00 4.35
2376 3394 2.040545 TGGTCCCCATTGTATTTCGTGT 59.959 45.455 0.00 0.00 0.00 4.49
2377 3395 2.681344 GGTCCCCATTGTATTTCGTGTC 59.319 50.000 0.00 0.00 0.00 3.67
2378 3396 3.340034 GTCCCCATTGTATTTCGTGTCA 58.660 45.455 0.00 0.00 0.00 3.58
2379 3397 3.754323 GTCCCCATTGTATTTCGTGTCAA 59.246 43.478 0.00 0.00 0.00 3.18
2380 3398 4.216687 GTCCCCATTGTATTTCGTGTCAAA 59.783 41.667 0.00 0.00 0.00 2.69
2381 3399 5.013547 TCCCCATTGTATTTCGTGTCAAAT 58.986 37.500 0.00 0.00 0.00 2.32
2382 3400 5.478679 TCCCCATTGTATTTCGTGTCAAATT 59.521 36.000 0.00 0.00 0.00 1.82
2383 3401 6.015010 TCCCCATTGTATTTCGTGTCAAATTT 60.015 34.615 0.00 0.00 0.00 1.82
2384 3402 6.648725 CCCCATTGTATTTCGTGTCAAATTTT 59.351 34.615 0.00 0.00 0.00 1.82
2385 3403 7.359933 CCCCATTGTATTTCGTGTCAAATTTTG 60.360 37.037 2.59 2.59 0.00 2.44
2386 3404 7.383572 CCCATTGTATTTCGTGTCAAATTTTGA 59.616 33.333 7.74 7.74 37.33 2.69
2387 3405 8.924691 CCATTGTATTTCGTGTCAAATTTTGAT 58.075 29.630 14.54 0.44 42.47 2.57
2388 3406 9.941991 CATTGTATTTCGTGTCAAATTTTGATC 57.058 29.630 14.54 10.13 42.47 2.92
2389 3407 9.689976 ATTGTATTTCGTGTCAAATTTTGATCA 57.310 25.926 14.54 11.36 42.47 2.92
2390 3408 9.689976 TTGTATTTCGTGTCAAATTTTGATCAT 57.310 25.926 14.54 4.66 42.47 2.45
2416 3434 8.502161 AGATTTAACTAACAAATTGTTCGTGC 57.498 30.769 15.22 4.18 40.22 5.34
2417 3435 8.132362 AGATTTAACTAACAAATTGTTCGTGCA 58.868 29.630 15.22 4.58 40.22 4.57
2418 3436 8.810652 ATTTAACTAACAAATTGTTCGTGCAT 57.189 26.923 15.22 5.76 40.22 3.96
2419 3437 7.616103 TTAACTAACAAATTGTTCGTGCATG 57.384 32.000 15.22 0.00 40.22 4.06
2420 3438 5.181690 ACTAACAAATTGTTCGTGCATGT 57.818 34.783 15.22 2.16 40.22 3.21
2421 3439 5.212194 ACTAACAAATTGTTCGTGCATGTC 58.788 37.500 15.22 1.60 40.22 3.06
2422 3440 3.706802 ACAAATTGTTCGTGCATGTCA 57.293 38.095 5.68 4.27 0.00 3.58
2423 3441 3.371168 ACAAATTGTTCGTGCATGTCAC 58.629 40.909 5.68 9.41 42.23 3.67
2424 3442 2.704725 AATTGTTCGTGCATGTCACC 57.295 45.000 5.68 2.78 42.69 4.02
2425 3443 1.603456 ATTGTTCGTGCATGTCACCA 58.397 45.000 5.68 0.00 42.69 4.17
2426 3444 1.383523 TTGTTCGTGCATGTCACCAA 58.616 45.000 5.68 9.26 42.69 3.67
2427 3445 1.383523 TGTTCGTGCATGTCACCAAA 58.616 45.000 5.68 6.65 42.69 3.28
2428 3446 1.745653 TGTTCGTGCATGTCACCAAAA 59.254 42.857 5.68 1.85 42.69 2.44
2429 3447 2.164422 TGTTCGTGCATGTCACCAAAAA 59.836 40.909 5.68 3.17 42.69 1.94
2430 3448 3.181482 TGTTCGTGCATGTCACCAAAAAT 60.181 39.130 5.68 0.00 42.69 1.82
2431 3449 3.724508 TCGTGCATGTCACCAAAAATT 57.275 38.095 5.68 0.00 42.69 1.82
2432 3450 4.837896 TCGTGCATGTCACCAAAAATTA 57.162 36.364 5.68 0.00 42.69 1.40
2433 3451 5.384063 TCGTGCATGTCACCAAAAATTAT 57.616 34.783 5.68 0.00 42.69 1.28
2434 3452 6.502136 TCGTGCATGTCACCAAAAATTATA 57.498 33.333 5.68 0.00 42.69 0.98
2435 3453 7.094508 TCGTGCATGTCACCAAAAATTATAT 57.905 32.000 5.68 0.00 42.69 0.86
2436 3454 7.192913 TCGTGCATGTCACCAAAAATTATATC 58.807 34.615 5.68 0.00 42.69 1.63
2437 3455 6.971756 CGTGCATGTCACCAAAAATTATATCA 59.028 34.615 12.62 0.00 42.69 2.15
2438 3456 7.648908 CGTGCATGTCACCAAAAATTATATCAT 59.351 33.333 12.62 0.00 42.69 2.45
2439 3457 9.316730 GTGCATGTCACCAAAAATTATATCATT 57.683 29.630 8.54 0.00 39.79 2.57
2440 3458 9.315525 TGCATGTCACCAAAAATTATATCATTG 57.684 29.630 0.00 0.00 0.00 2.82
2441 3459 9.531942 GCATGTCACCAAAAATTATATCATTGA 57.468 29.630 0.00 0.00 0.00 2.57
2468 3486 9.763465 AAACTATGTTTAAATACGAATCCAACG 57.237 29.630 0.00 0.00 0.00 4.10
2469 3487 8.706492 ACTATGTTTAAATACGAATCCAACGA 57.294 30.769 0.00 0.00 34.70 3.85
2470 3488 9.321562 ACTATGTTTAAATACGAATCCAACGAT 57.678 29.630 0.00 0.00 34.70 3.73
2483 3501 9.284594 ACGAATCCAACGATATAATTTTTGTTG 57.715 29.630 0.00 8.06 37.14 3.33
2484 3502 9.497030 CGAATCCAACGATATAATTTTTGTTGA 57.503 29.630 13.41 5.01 39.11 3.18
2488 3506 9.566530 TCCAACGATATAATTTTTGTTGACATG 57.433 29.630 13.41 0.00 39.11 3.21
2489 3507 8.320295 CCAACGATATAATTTTTGTTGACATGC 58.680 33.333 13.41 0.00 39.11 4.06
2490 3508 8.858186 CAACGATATAATTTTTGTTGACATGCA 58.142 29.630 0.00 0.00 39.11 3.96
2491 3509 9.585099 AACGATATAATTTTTGTTGACATGCAT 57.415 25.926 0.00 0.00 0.00 3.96
2492 3510 9.585099 ACGATATAATTTTTGTTGACATGCATT 57.415 25.926 0.00 0.00 0.00 3.56
2499 3517 9.881529 AATTTTTGTTGACATGCATTAACATTC 57.118 25.926 16.96 7.20 33.56 2.67
2500 3518 8.659925 TTTTTGTTGACATGCATTAACATTCT 57.340 26.923 16.96 0.00 33.56 2.40
2501 3519 7.640616 TTTGTTGACATGCATTAACATTCTG 57.359 32.000 16.96 0.12 33.56 3.02
2502 3520 6.330004 TGTTGACATGCATTAACATTCTGT 57.670 33.333 13.87 0.85 0.00 3.41
2503 3521 6.747125 TGTTGACATGCATTAACATTCTGTT 58.253 32.000 13.87 0.00 43.88 3.16
2504 3522 7.880105 TGTTGACATGCATTAACATTCTGTTA 58.120 30.769 13.87 0.00 41.45 2.41
2505 3523 8.022550 TGTTGACATGCATTAACATTCTGTTAG 58.977 33.333 13.87 0.00 42.93 2.34
2506 3524 7.686438 TGACATGCATTAACATTCTGTTAGT 57.314 32.000 0.00 0.00 42.93 2.24
2507 3525 8.109705 TGACATGCATTAACATTCTGTTAGTT 57.890 30.769 0.00 0.00 42.93 2.24
2508 3526 9.225436 TGACATGCATTAACATTCTGTTAGTTA 57.775 29.630 0.00 0.00 42.93 2.24
2544 3562 8.930760 TCAAAGTTTGACACAAATTACAAAAGG 58.069 29.630 14.35 0.00 34.76 3.11
2545 3563 7.841915 AAGTTTGACACAAATTACAAAAGGG 57.158 32.000 0.00 0.00 34.76 3.95
2546 3564 7.176589 AGTTTGACACAAATTACAAAAGGGA 57.823 32.000 0.00 0.00 34.76 4.20
2547 3565 7.039270 AGTTTGACACAAATTACAAAAGGGAC 58.961 34.615 0.00 0.00 34.76 4.46
2548 3566 5.523438 TGACACAAATTACAAAAGGGACC 57.477 39.130 0.00 0.00 0.00 4.46
2549 3567 4.956700 TGACACAAATTACAAAAGGGACCA 59.043 37.500 0.00 0.00 0.00 4.02
2550 3568 5.422331 TGACACAAATTACAAAAGGGACCAA 59.578 36.000 0.00 0.00 0.00 3.67
2551 3569 6.098982 TGACACAAATTACAAAAGGGACCAAT 59.901 34.615 0.00 0.00 0.00 3.16
2552 3570 7.287927 TGACACAAATTACAAAAGGGACCAATA 59.712 33.333 0.00 0.00 0.00 1.90
2553 3571 8.024145 ACACAAATTACAAAAGGGACCAATAA 57.976 30.769 0.00 0.00 0.00 1.40
2554 3572 8.487028 ACACAAATTACAAAAGGGACCAATAAA 58.513 29.630 0.00 0.00 0.00 1.40
2555 3573 8.769891 CACAAATTACAAAAGGGACCAATAAAC 58.230 33.333 0.00 0.00 0.00 2.01
2556 3574 7.934665 ACAAATTACAAAAGGGACCAATAAACC 59.065 33.333 0.00 0.00 0.00 3.27
2557 3575 7.619512 AATTACAAAAGGGACCAATAAACCA 57.380 32.000 0.00 0.00 0.00 3.67
2558 3576 6.658188 TTACAAAAGGGACCAATAAACCAG 57.342 37.500 0.00 0.00 0.00 4.00
2559 3577 3.901222 ACAAAAGGGACCAATAAACCAGG 59.099 43.478 0.00 0.00 0.00 4.45
2560 3578 4.156477 CAAAAGGGACCAATAAACCAGGA 58.844 43.478 0.00 0.00 0.00 3.86
2561 3579 4.692523 AAAGGGACCAATAAACCAGGAT 57.307 40.909 0.00 0.00 0.00 3.24
2562 3580 3.669939 AGGGACCAATAAACCAGGATG 57.330 47.619 0.00 0.00 0.00 3.51
2585 3603 3.182152 AGGTAGTACATGCTTTCCCTGT 58.818 45.455 2.06 0.00 0.00 4.00
2609 3627 1.937546 GCCATAGCAGGTTGTGGTGC 61.938 60.000 1.33 0.00 37.49 5.01
2618 3636 1.600916 GTTGTGGTGCTGGGAGGAC 60.601 63.158 0.00 0.00 35.67 3.85
2620 3638 2.032681 GTGGTGCTGGGAGGACAC 59.967 66.667 0.00 0.00 38.40 3.67
2626 3644 1.961277 GCTGGGAGGACACAACACG 60.961 63.158 0.00 0.00 0.00 4.49
2641 3659 1.639280 ACACGCAAAAGCCAAAACAG 58.361 45.000 0.00 0.00 0.00 3.16
2647 3665 3.000825 CGCAAAAGCCAAAACAGTTTACC 59.999 43.478 0.00 0.00 0.00 2.85
2668 3686 4.694037 ACCGTTCCAGCTTTTAGTATGAAC 59.306 41.667 0.00 0.00 0.00 3.18
2699 3726 5.622041 GCATGTTTGTTGAATTTCATTGCAC 59.378 36.000 0.00 0.00 0.00 4.57
2763 3790 3.319755 CCAATATGGATGCGAATTTGCC 58.680 45.455 15.20 0.30 40.96 4.52
2865 3893 5.407387 CACAAGCAAAAATGGAGGAGAATTG 59.593 40.000 0.00 0.00 0.00 2.32
2868 3896 6.272822 AGCAAAAATGGAGGAGAATTGTAC 57.727 37.500 0.00 0.00 0.00 2.90
2901 3937 7.941919 TGAGTATATATATGATCGGCCAACTC 58.058 38.462 2.24 7.35 0.00 3.01
2905 3941 2.325583 TATGATCGGCCAACTCCAAC 57.674 50.000 2.24 0.00 0.00 3.77
2979 4015 5.307196 AGGACTTTTACTGGAGAAAGCACTA 59.693 40.000 0.00 0.00 36.56 2.74
2995 4031 3.019564 GCACTAAAGATGGGTGAAGCAT 58.980 45.455 0.00 0.00 33.32 3.79
3107 4143 8.582245 GGTTCAGACCAATCATCGGAGAAGAT 62.582 46.154 0.00 0.00 45.77 2.40
3155 4191 4.848357 AGGTCTGACCAATCTAAATGTGG 58.152 43.478 27.48 0.00 41.95 4.17
3245 4283 9.736023 CTTTTTGAGAGCTATGTTGTTAAAACT 57.264 29.630 0.00 0.00 0.00 2.66
3362 4435 9.233232 GTCATCTAACAACACACTTTTTAAAGG 57.767 33.333 7.12 0.00 40.31 3.11
3363 4436 8.410141 TCATCTAACAACACACTTTTTAAAGGG 58.590 33.333 3.00 3.00 44.94 3.95
3364 4437 7.941431 TCTAACAACACACTTTTTAAAGGGA 57.059 32.000 11.24 0.00 42.02 4.20
3365 4438 8.350852 TCTAACAACACACTTTTTAAAGGGAA 57.649 30.769 11.24 0.00 42.02 3.97
3367 4440 9.425577 CTAACAACACACTTTTTAAAGGGAAAA 57.574 29.630 11.24 0.00 42.02 2.29
3368 4441 8.856153 AACAACACACTTTTTAAAGGGAAAAT 57.144 26.923 11.24 0.00 42.02 1.82
3387 4460 9.408648 GGGAAAATTCTTATATTTCTGACAGGA 57.591 33.333 1.81 0.00 34.34 3.86
3405 4487 6.381420 TGACAGGAGAGTAAATTTAGGGAGAG 59.619 42.308 0.00 0.00 0.00 3.20
3523 4609 3.278574 GGACCATTTTCGATCATGACCA 58.721 45.455 0.00 0.00 0.00 4.02
3556 4642 9.981114 ACTTAAAAAGAGGTGGTTGATTTATTG 57.019 29.630 0.00 0.00 0.00 1.90
3566 4652 5.348451 GTGGTTGATTTATTGTGCCACATTC 59.652 40.000 0.00 0.00 42.97 2.67
3567 4653 4.562394 GGTTGATTTATTGTGCCACATTCG 59.438 41.667 0.00 0.00 0.00 3.34
3589 5353 4.557296 CGCAAGAACATTGTTCACTTCCAT 60.557 41.667 26.73 5.95 43.02 3.41
3590 5354 5.334802 CGCAAGAACATTGTTCACTTCCATA 60.335 40.000 26.73 0.00 43.02 2.74
3826 5596 1.009829 GGCGAGGTAAGCTCAACATG 58.990 55.000 0.00 0.00 34.52 3.21
3860 5630 8.096414 ACTGGCAATTTATAGTTCAATTTTGCT 58.904 29.630 0.00 0.00 0.00 3.91
4021 5798 2.967362 TGTTTCGTAGGTGATCGCAAT 58.033 42.857 8.82 0.00 0.00 3.56
4281 6071 1.269621 CGGTCAAGTTCTTGAGGACGT 60.270 52.381 14.42 0.00 0.00 4.34
4282 6072 2.135933 GGTCAAGTTCTTGAGGACGTG 58.864 52.381 14.42 0.00 0.00 4.49
4294 6084 1.139058 GAGGACGTGTGCTGGGATTAT 59.861 52.381 0.00 0.00 0.00 1.28
4595 6392 3.120304 GCACAACCGAAGATACACTTTCC 60.120 47.826 0.00 0.00 39.13 3.13
4650 6447 3.560025 GCCTTCTTCAAAGGATGGTGAGA 60.560 47.826 7.99 0.00 39.81 3.27
4727 6525 6.573664 TGGATACCAAAACAGTCTTCAATG 57.426 37.500 0.00 0.00 0.00 2.82
4743 6541 2.091610 TCAATGACCTTGTTTGACCCCA 60.092 45.455 0.00 0.00 36.20 4.96
4752 6550 2.104170 TGTTTGACCCCAACTTTGTCC 58.896 47.619 0.00 0.00 30.88 4.02
4771 6791 7.956420 TTGTCCGTATATATGTTGATCCAAC 57.044 36.000 3.10 3.10 43.78 3.77
4791 6813 7.610865 TCCAACTTTTCTTTGATGTTCTTGTT 58.389 30.769 0.00 0.00 0.00 2.83
4795 6817 8.519799 ACTTTTCTTTGATGTTCTTGTTCCTA 57.480 30.769 0.00 0.00 0.00 2.94
4940 6962 2.280628 GTCCCAGCTGTGCTAATGTAC 58.719 52.381 13.81 0.00 36.40 2.90
4981 7003 7.208080 GGAAGCGTATAGAAAAGAGTGGAATA 58.792 38.462 0.00 0.00 0.00 1.75
4982 7004 7.709613 GGAAGCGTATAGAAAAGAGTGGAATAA 59.290 37.037 0.00 0.00 0.00 1.40
4983 7005 9.262358 GAAGCGTATAGAAAAGAGTGGAATAAT 57.738 33.333 0.00 0.00 0.00 1.28
5071 7094 9.838975 TGCTAAACATTACATTTGTATGAAGTG 57.161 29.630 0.00 0.00 35.65 3.16
5089 7112 3.084039 AGTGAAGGCATACAACCATGTG 58.916 45.455 0.00 0.00 40.84 3.21
5176 7199 5.878332 TGGATGTGATAACATGTGTCAAC 57.122 39.130 13.87 9.87 0.00 3.18
5183 7206 4.889995 TGATAACATGTGTCAACCAAACCA 59.110 37.500 10.76 0.00 0.00 3.67
5213 7236 3.362831 GGAACGTGTCATGTACAACGTAG 59.637 47.826 20.30 5.25 41.61 3.51
5225 7248 8.525316 TCATGTACAACGTAGATAAGGAAGAAA 58.475 33.333 0.00 0.00 0.00 2.52
5226 7249 9.314321 CATGTACAACGTAGATAAGGAAGAAAT 57.686 33.333 0.00 0.00 0.00 2.17
5251 7274 3.899360 AGGCATCATTTATTCCCACATGG 59.101 43.478 0.00 0.00 0.00 3.66
5269 7292 0.833949 GGAGGGAGAACAGATGGTCC 59.166 60.000 0.00 0.00 30.36 4.46
5272 7295 2.696187 GAGGGAGAACAGATGGTCCTAC 59.304 54.545 0.00 0.00 30.36 3.18
5307 7330 3.649843 TGTCACCGGGAGTAAGGATATT 58.350 45.455 6.32 0.00 0.00 1.28
5309 7332 5.399991 TGTCACCGGGAGTAAGGATATTAT 58.600 41.667 6.32 0.00 0.00 1.28
5311 7334 7.011994 TGTCACCGGGAGTAAGGATATTATAA 58.988 38.462 6.32 0.00 0.00 0.98
5312 7335 7.510001 TGTCACCGGGAGTAAGGATATTATAAA 59.490 37.037 6.32 0.00 0.00 1.40
5313 7336 8.033626 GTCACCGGGAGTAAGGATATTATAAAG 58.966 40.741 6.32 0.00 0.00 1.85
5314 7337 6.817140 CACCGGGAGTAAGGATATTATAAAGC 59.183 42.308 6.32 0.00 0.00 3.51
5315 7338 6.499350 ACCGGGAGTAAGGATATTATAAAGCA 59.501 38.462 6.32 0.00 0.00 3.91
5317 7340 7.495934 CCGGGAGTAAGGATATTATAAAGCATG 59.504 40.741 0.00 0.00 0.00 4.06
5318 7341 7.011482 CGGGAGTAAGGATATTATAAAGCATGC 59.989 40.741 10.51 10.51 0.00 4.06
5319 7342 7.283354 GGGAGTAAGGATATTATAAAGCATGCC 59.717 40.741 15.66 0.00 0.00 4.40
5320 7343 7.829211 GGAGTAAGGATATTATAAAGCATGCCA 59.171 37.037 15.66 0.00 0.00 4.92
5321 7344 9.401058 GAGTAAGGATATTATAAAGCATGCCAT 57.599 33.333 15.66 8.16 0.00 4.40
5322 7345 9.759473 AGTAAGGATATTATAAAGCATGCCATT 57.241 29.630 15.66 12.74 0.00 3.16
5324 7347 8.654485 AAGGATATTATAAAGCATGCCATTCA 57.346 30.769 15.66 0.00 0.00 2.57
5325 7348 8.654485 AGGATATTATAAAGCATGCCATTCAA 57.346 30.769 15.66 8.38 0.00 2.69
5326 7349 9.263446 AGGATATTATAAAGCATGCCATTCAAT 57.737 29.630 15.66 14.17 0.00 2.57
5336 7359 4.634199 CATGCCATTCAATATTTGGGGTC 58.366 43.478 6.76 0.00 0.00 4.46
5494 7519 1.161843 GAAAATCCGCCCGAACAGAA 58.838 50.000 0.00 0.00 0.00 3.02
5495 7520 1.130561 GAAAATCCGCCCGAACAGAAG 59.869 52.381 0.00 0.00 0.00 2.85
5527 7552 1.202428 GCCGGCCCGCAAAAATATTTA 60.202 47.619 18.11 0.00 0.00 1.40
5552 7577 0.248866 CGCGGCAAAAACTTGACCTT 60.249 50.000 0.00 0.00 0.00 3.50
5560 7585 2.351706 AAACTTGACCTTAACCCGCA 57.648 45.000 0.00 0.00 0.00 5.69
5561 7586 1.892209 AACTTGACCTTAACCCGCAG 58.108 50.000 0.00 0.00 0.00 5.18
5667 7709 1.152546 GCTTTCCCCACCAACCACT 60.153 57.895 0.00 0.00 0.00 4.00
5757 7809 1.568612 CTGCCACACGCACGAGATTT 61.569 55.000 0.00 0.00 44.64 2.17
5764 7830 1.878522 CGCACGAGATTTCCCTCCG 60.879 63.158 0.00 0.00 0.00 4.63
5769 7835 3.097162 AGATTTCCCTCCGCCCCC 61.097 66.667 0.00 0.00 0.00 5.40
5800 7866 1.896660 GTGGGCCAGAAAGTTGCGA 60.897 57.895 6.40 0.00 0.00 5.10
5808 7874 1.460743 CAGAAAGTTGCGAATCTGCGA 59.539 47.619 0.00 0.00 37.81 5.10
5818 7884 1.587547 GAATCTGCGACCCTTCATCC 58.412 55.000 0.00 0.00 0.00 3.51
5820 7886 0.982852 ATCTGCGACCCTTCATCCCA 60.983 55.000 0.00 0.00 0.00 4.37
5887 7953 2.187946 GAGTGGTCGGGGAGCATG 59.812 66.667 0.50 0.00 42.05 4.06
5901 7967 2.186903 CATGTCGCTTAGCCCCGT 59.813 61.111 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.753294 ACATATGAAGCCCTTCTACCG 57.247 47.619 10.38 0.00 40.14 4.02
8 9 4.535781 TGCACAATACATATGAAGCCCTT 58.464 39.130 10.38 0.00 0.00 3.95
41 42 2.106166 GGAGATCAGCATTGGATGAGGT 59.894 50.000 0.00 0.00 43.64 3.85
46 47 3.053842 ACAAGTGGAGATCAGCATTGGAT 60.054 43.478 0.00 0.00 0.00 3.41
49 50 3.340928 TCACAAGTGGAGATCAGCATTG 58.659 45.455 0.00 0.00 0.00 2.82
62 63 4.867047 CAGCTAGGTAGTTCATCACAAGTG 59.133 45.833 0.00 0.00 0.00 3.16
119 120 2.124778 GGCTCAGCAGCTCCTTCC 60.125 66.667 0.00 0.00 46.03 3.46
137 138 2.102588 TCCTTAGCCAGCTATTTCGACC 59.897 50.000 0.00 0.00 0.00 4.79
164 165 6.662755 AGTGCCTAATGAGTTAATGGATTCA 58.337 36.000 0.00 0.00 0.00 2.57
239 240 1.394266 ATCATTGCATTGGGACCGCC 61.394 55.000 8.64 0.00 0.00 6.13
240 241 0.249155 CATCATTGCATTGGGACCGC 60.249 55.000 8.64 0.00 0.00 5.68
241 242 1.066002 GACATCATTGCATTGGGACCG 59.934 52.381 8.64 0.00 0.00 4.79
279 284 1.202348 GAATGTGTAGCTTGGTTGGCC 59.798 52.381 0.00 0.00 0.00 5.36
286 291 2.161012 CAGCACCAGAATGTGTAGCTTG 59.839 50.000 0.00 0.00 38.52 4.01
291 296 0.327924 CCCCAGCACCAGAATGTGTA 59.672 55.000 0.00 0.00 38.52 2.90
293 298 2.345760 GCCCCAGCACCAGAATGTG 61.346 63.158 0.00 0.00 39.53 3.21
317 322 5.477291 AGAACACATCTCTCTTTCCTCGTTA 59.523 40.000 0.00 0.00 30.46 3.18
318 323 4.282195 AGAACACATCTCTCTTTCCTCGTT 59.718 41.667 0.00 0.00 30.46 3.85
319 324 3.829601 AGAACACATCTCTCTTTCCTCGT 59.170 43.478 0.00 0.00 30.46 4.18
379 384 8.539544 TGTCAGATAGAAGTATGAATTGAACCA 58.460 33.333 0.00 0.00 0.00 3.67
423 428 9.444600 TTCTTAGTGGTTTGTATCTAAATGACC 57.555 33.333 0.00 0.00 0.00 4.02
468 485 9.881649 CTTGTATCTGTGGCATTAGATATGTAT 57.118 33.333 20.27 4.10 37.98 2.29
487 581 6.195244 CACGCATTGCATCTTAAACTTGTATC 59.805 38.462 9.69 0.00 0.00 2.24
540 635 5.007385 ACGGCAACTCTAGTCGATATTTT 57.993 39.130 0.00 0.00 0.00 1.82
541 636 4.650754 ACGGCAACTCTAGTCGATATTT 57.349 40.909 0.00 0.00 0.00 1.40
543 638 4.320348 GCTAACGGCAACTCTAGTCGATAT 60.320 45.833 0.00 0.00 41.35 1.63
544 639 3.003068 GCTAACGGCAACTCTAGTCGATA 59.997 47.826 0.00 0.00 41.35 2.92
545 640 2.223525 GCTAACGGCAACTCTAGTCGAT 60.224 50.000 0.00 0.00 41.35 3.59
546 641 1.131883 GCTAACGGCAACTCTAGTCGA 59.868 52.381 0.00 0.00 41.35 4.20
706 834 3.008266 TGAGTGACAGAATGAATGCCTCA 59.992 43.478 0.00 0.00 39.69 3.86
784 912 2.614829 ACCCACCTGTATTCGCATAC 57.385 50.000 0.00 0.00 36.52 2.39
790 918 5.048852 GTCTATCGAGTACCCACCTGTATTC 60.049 48.000 0.00 0.00 0.00 1.75
791 919 4.826183 GTCTATCGAGTACCCACCTGTATT 59.174 45.833 0.00 0.00 0.00 1.89
802 932 8.984891 TGCTACTCTTATAGTCTATCGAGTAC 57.015 38.462 18.79 16.57 39.80 2.73
845 975 3.074281 CGTTGGGGGTGGCTTAGA 58.926 61.111 0.00 0.00 0.00 2.10
854 984 4.341502 CTTGCGTTGCGTTGGGGG 62.342 66.667 0.00 0.00 0.00 5.40
862 992 1.655350 GTGTCTGTGCTTGCGTTGC 60.655 57.895 0.00 0.00 0.00 4.17
912 1042 3.193691 CGGTTTCTCTTGGAAGCTAGAGA 59.806 47.826 9.45 9.45 43.77 3.10
989 1133 3.120105 CGTCCATGGCGAGCTCTA 58.880 61.111 19.72 0.00 0.00 2.43
1067 1212 2.172851 TTGCGTACATTTTCCGAGGT 57.827 45.000 0.00 0.00 0.00 3.85
1095 1240 2.370281 AAGGGCTCGCGATGTATATG 57.630 50.000 10.36 0.00 0.00 1.78
1141 1324 9.676861 ACTGCATGCATAGATACATAATACATT 57.323 29.630 22.97 0.00 0.00 2.71
1142 1325 9.106070 CACTGCATGCATAGATACATAATACAT 57.894 33.333 22.97 0.00 0.00 2.29
1143 1326 8.313292 TCACTGCATGCATAGATACATAATACA 58.687 33.333 22.97 0.00 0.00 2.29
1144 1327 8.707938 TCACTGCATGCATAGATACATAATAC 57.292 34.615 22.97 0.00 0.00 1.89
1145 1328 9.321562 CATCACTGCATGCATAGATACATAATA 57.678 33.333 25.50 5.00 0.00 0.98
1146 1329 7.282450 CCATCACTGCATGCATAGATACATAAT 59.718 37.037 25.50 8.50 0.00 1.28
1147 1330 6.596497 CCATCACTGCATGCATAGATACATAA 59.404 38.462 25.50 6.14 0.00 1.90
1148 1331 6.110707 CCATCACTGCATGCATAGATACATA 58.889 40.000 25.50 6.71 0.00 2.29
1273 1456 2.874701 AGCAATGACGCATATCCACTTC 59.125 45.455 0.00 0.00 0.00 3.01
1278 1461 2.543848 TCGAAAGCAATGACGCATATCC 59.456 45.455 0.00 0.00 0.00 2.59
1281 1464 1.663643 GGTCGAAAGCAATGACGCATA 59.336 47.619 0.00 0.00 33.45 3.14
1300 1490 2.216046 CACTGCATATAGCTGGTGTGG 58.784 52.381 0.00 0.00 45.49 4.17
1304 1494 3.307269 CCATAGCACTGCATATAGCTGGT 60.307 47.826 3.30 0.00 45.49 4.00
1305 1495 3.055602 TCCATAGCACTGCATATAGCTGG 60.056 47.826 3.30 7.02 45.49 4.85
1312 1502 2.439135 ACCATGTCCATAGCACTGCATA 59.561 45.455 3.30 0.00 0.00 3.14
1327 1523 9.043548 ACTATACAACTAAAGGTTAGACCATGT 57.956 33.333 2.11 4.64 41.95 3.21
1330 1526 8.677300 CGTACTATACAACTAAAGGTTAGACCA 58.323 37.037 2.11 0.00 41.95 4.02
1345 1543 1.471327 GGCGCCCAACGTACTATACAA 60.471 52.381 18.11 0.00 46.11 2.41
1359 1557 1.132453 GAGTTTGTAAAGATGGCGCCC 59.868 52.381 26.77 9.73 0.00 6.13
1361 1559 3.429085 CATGAGTTTGTAAAGATGGCGC 58.571 45.455 0.00 0.00 0.00 6.53
1362 1560 3.731867 GCCATGAGTTTGTAAAGATGGCG 60.732 47.826 14.33 0.00 44.62 5.69
1366 1564 4.460382 CCAGTGCCATGAGTTTGTAAAGAT 59.540 41.667 0.00 0.00 0.00 2.40
1373 1571 2.624838 AGTTTCCAGTGCCATGAGTTTG 59.375 45.455 0.00 0.00 0.00 2.93
1380 1578 2.564062 CCAAATGAGTTTCCAGTGCCAT 59.436 45.455 0.00 0.00 0.00 4.40
1397 1595 1.868469 CGGTACCAAGACGAACCAAA 58.132 50.000 13.54 0.00 32.04 3.28
1518 1716 3.507009 CGAGTCCCGACGTCTCCC 61.507 72.222 14.70 0.00 41.76 4.30
1649 1847 4.673311 CAGTTTTACGTGTATTTGCCACAC 59.327 41.667 0.00 0.00 42.31 3.82
1717 1916 6.592220 CCATGATGAAAAATCTGCAATTGTCA 59.408 34.615 7.40 4.95 0.00 3.58
1869 2069 5.559148 ATGCTACTGATTTCTAGGGGAAG 57.441 43.478 0.00 0.00 35.16 3.46
1883 2083 2.492881 TGGATGGTGCAAAATGCTACTG 59.507 45.455 3.78 0.00 45.31 2.74
1885 2085 3.591196 TTGGATGGTGCAAAATGCTAC 57.409 42.857 3.78 0.91 45.31 3.58
1945 2237 6.606234 TTAGTTTGAAACGCATGACTTGTA 57.394 33.333 1.97 0.00 36.23 2.41
1967 2261 9.297037 AGGTTCACAAGCTGTAATAAGTAAATT 57.703 29.630 0.00 0.00 37.93 1.82
1973 2267 9.394477 GTTAAAAGGTTCACAAGCTGTAATAAG 57.606 33.333 0.00 0.00 39.57 1.73
1992 2286 6.120220 CCCCCTCTAACATACAGGTTAAAAG 58.880 44.000 0.00 0.00 33.18 2.27
2016 2310 3.250762 TCTGTTTATCTGTGCACAACTGC 59.749 43.478 21.98 9.54 44.52 4.40
2128 2442 5.711976 ACCTCCATTCTAAAATTCTGTGGTG 59.288 40.000 0.00 0.00 0.00 4.17
2184 2507 3.229293 TCTGAGCCAGGTATCTCTGATG 58.771 50.000 2.86 0.00 36.93 3.07
2186 2509 3.139957 AGATCTGAGCCAGGTATCTCTGA 59.860 47.826 0.00 5.11 40.10 3.27
2196 2519 3.380637 CCCAAAAATCAGATCTGAGCCAG 59.619 47.826 28.26 16.80 43.61 4.85
2223 2546 2.033407 CAGAGACAAGTTCAACGCTGTG 60.033 50.000 3.29 0.00 0.00 3.66
2227 2550 1.865865 TCCAGAGACAAGTTCAACGC 58.134 50.000 0.00 0.00 0.00 4.84
2236 2559 2.104792 CACCAGGTTCTTCCAGAGACAA 59.895 50.000 0.00 0.00 39.02 3.18
2279 2746 7.545965 GTGAATATGGATATCCGGTGAGTTTAG 59.454 40.741 17.04 0.00 39.43 1.85
2319 3337 2.159142 AGGTAGTATGTAGGCAACACGC 60.159 50.000 0.00 0.00 42.09 5.34
2332 3350 3.836562 ACAAACCAAGACGGAGGTAGTAT 59.163 43.478 0.00 0.00 37.07 2.12
2333 3351 3.233507 ACAAACCAAGACGGAGGTAGTA 58.766 45.455 0.00 0.00 37.07 1.82
2334 3352 2.044758 ACAAACCAAGACGGAGGTAGT 58.955 47.619 0.00 0.00 37.07 2.73
2335 3353 2.806244 CAACAAACCAAGACGGAGGTAG 59.194 50.000 0.00 0.00 37.07 3.18
2336 3354 2.485835 CCAACAAACCAAGACGGAGGTA 60.486 50.000 0.00 0.00 37.07 3.08
2337 3355 1.675552 CAACAAACCAAGACGGAGGT 58.324 50.000 0.00 0.00 40.61 3.85
2338 3356 0.951558 CCAACAAACCAAGACGGAGG 59.048 55.000 0.00 0.00 38.63 4.30
2339 3357 1.602377 GACCAACAAACCAAGACGGAG 59.398 52.381 0.00 0.00 38.63 4.63
2340 3358 1.670791 GACCAACAAACCAAGACGGA 58.329 50.000 0.00 0.00 38.63 4.69
2341 3359 0.666374 GGACCAACAAACCAAGACGG 59.334 55.000 0.00 0.00 42.50 4.79
2342 3360 0.666374 GGGACCAACAAACCAAGACG 59.334 55.000 0.00 0.00 0.00 4.18
2357 3375 3.340034 TGACACGAAATACAATGGGGAC 58.660 45.455 0.00 0.00 0.00 4.46
2358 3376 3.704800 TGACACGAAATACAATGGGGA 57.295 42.857 0.00 0.00 0.00 4.81
2359 3377 4.775058 TTTGACACGAAATACAATGGGG 57.225 40.909 0.00 0.00 0.00 4.96
2360 3378 7.383572 TCAAAATTTGACACGAAATACAATGGG 59.616 33.333 4.03 0.00 34.08 4.00
2361 3379 8.291888 TCAAAATTTGACACGAAATACAATGG 57.708 30.769 4.03 0.00 34.08 3.16
2362 3380 9.941991 GATCAAAATTTGACACGAAATACAATG 57.058 29.630 10.91 0.00 43.48 2.82
2363 3381 9.689976 TGATCAAAATTTGACACGAAATACAAT 57.310 25.926 10.91 0.00 43.48 2.71
2364 3382 9.689976 ATGATCAAAATTTGACACGAAATACAA 57.310 25.926 10.91 0.00 43.48 2.41
2390 3408 9.601971 GCACGAACAATTTGTTAGTTAAATCTA 57.398 29.630 20.86 0.00 42.16 1.98
2391 3409 8.132362 TGCACGAACAATTTGTTAGTTAAATCT 58.868 29.630 20.86 0.79 42.16 2.40
2392 3410 8.276060 TGCACGAACAATTTGTTAGTTAAATC 57.724 30.769 20.86 11.04 42.16 2.17
2393 3411 8.698854 CATGCACGAACAATTTGTTAGTTAAAT 58.301 29.630 20.86 13.54 42.16 1.40
2394 3412 7.702772 ACATGCACGAACAATTTGTTAGTTAAA 59.297 29.630 20.86 12.24 42.16 1.52
2395 3413 7.197017 ACATGCACGAACAATTTGTTAGTTAA 58.803 30.769 20.86 14.16 42.16 2.01
2396 3414 6.730175 ACATGCACGAACAATTTGTTAGTTA 58.270 32.000 20.86 14.87 42.16 2.24
2397 3415 5.587289 ACATGCACGAACAATTTGTTAGTT 58.413 33.333 20.86 8.33 42.16 2.24
2398 3416 5.181690 ACATGCACGAACAATTTGTTAGT 57.818 34.783 18.60 18.60 44.89 2.24
2399 3417 5.115472 GTGACATGCACGAACAATTTGTTAG 59.885 40.000 14.49 16.16 38.04 2.34
2400 3418 4.973051 GTGACATGCACGAACAATTTGTTA 59.027 37.500 14.49 0.00 38.04 2.41
2401 3419 3.796178 GTGACATGCACGAACAATTTGTT 59.204 39.130 14.42 14.42 39.56 2.83
2402 3420 3.371168 GTGACATGCACGAACAATTTGT 58.629 40.909 0.00 0.00 37.83 2.83
2413 3431 8.876275 ATGATATAATTTTTGGTGACATGCAC 57.124 30.769 10.63 10.63 46.98 4.57
2414 3432 9.315525 CAATGATATAATTTTTGGTGACATGCA 57.684 29.630 0.00 0.00 42.32 3.96
2415 3433 9.531942 TCAATGATATAATTTTTGGTGACATGC 57.468 29.630 0.00 0.00 42.32 4.06
2442 3460 9.763465 CGTTGGATTCGTATTTAAACATAGTTT 57.237 29.630 0.51 0.51 0.00 2.66
2443 3461 9.153721 TCGTTGGATTCGTATTTAAACATAGTT 57.846 29.630 0.00 0.00 0.00 2.24
2444 3462 8.706492 TCGTTGGATTCGTATTTAAACATAGT 57.294 30.769 0.00 0.00 0.00 2.12
2457 3475 9.284594 CAACAAAAATTATATCGTTGGATTCGT 57.715 29.630 0.00 0.00 34.00 3.85
2458 3476 9.497030 TCAACAAAAATTATATCGTTGGATTCG 57.503 29.630 0.00 0.00 35.57 3.34
2462 3480 9.566530 CATGTCAACAAAAATTATATCGTTGGA 57.433 29.630 0.00 0.00 35.57 3.53
2463 3481 8.320295 GCATGTCAACAAAAATTATATCGTTGG 58.680 33.333 0.00 0.00 35.57 3.77
2464 3482 8.858186 TGCATGTCAACAAAAATTATATCGTTG 58.142 29.630 0.00 0.00 36.05 4.10
2465 3483 8.978564 TGCATGTCAACAAAAATTATATCGTT 57.021 26.923 0.00 0.00 0.00 3.85
2466 3484 9.585099 AATGCATGTCAACAAAAATTATATCGT 57.415 25.926 0.00 0.00 0.00 3.73
2473 3491 9.881529 GAATGTTAATGCATGTCAACAAAAATT 57.118 25.926 19.60 12.46 34.79 1.82
2474 3492 9.275398 AGAATGTTAATGCATGTCAACAAAAAT 57.725 25.926 19.60 10.51 34.79 1.82
2475 3493 8.549548 CAGAATGTTAATGCATGTCAACAAAAA 58.450 29.630 19.60 3.72 34.79 1.94
2476 3494 8.074474 CAGAATGTTAATGCATGTCAACAAAA 57.926 30.769 19.60 3.99 34.79 2.44
2477 3495 7.640616 CAGAATGTTAATGCATGTCAACAAA 57.359 32.000 19.60 4.53 34.79 2.83
2518 3536 8.930760 CCTTTTGTAATTTGTGTCAAACTTTGA 58.069 29.630 0.00 0.00 37.33 2.69
2519 3537 8.174422 CCCTTTTGTAATTTGTGTCAAACTTTG 58.826 33.333 0.00 0.00 31.07 2.77
2520 3538 8.097662 TCCCTTTTGTAATTTGTGTCAAACTTT 58.902 29.630 0.00 0.00 31.07 2.66
2521 3539 7.547722 GTCCCTTTTGTAATTTGTGTCAAACTT 59.452 33.333 0.00 0.00 31.07 2.66
2522 3540 7.039270 GTCCCTTTTGTAATTTGTGTCAAACT 58.961 34.615 0.00 0.00 31.07 2.66
2523 3541 6.256975 GGTCCCTTTTGTAATTTGTGTCAAAC 59.743 38.462 0.00 0.00 31.07 2.93
2524 3542 6.070767 TGGTCCCTTTTGTAATTTGTGTCAAA 60.071 34.615 0.00 0.00 0.00 2.69
2525 3543 5.422331 TGGTCCCTTTTGTAATTTGTGTCAA 59.578 36.000 0.00 0.00 0.00 3.18
2526 3544 4.956700 TGGTCCCTTTTGTAATTTGTGTCA 59.043 37.500 0.00 0.00 0.00 3.58
2527 3545 5.523438 TGGTCCCTTTTGTAATTTGTGTC 57.477 39.130 0.00 0.00 0.00 3.67
2528 3546 5.941555 TTGGTCCCTTTTGTAATTTGTGT 57.058 34.783 0.00 0.00 0.00 3.72
2529 3547 8.769891 GTTTATTGGTCCCTTTTGTAATTTGTG 58.230 33.333 0.00 0.00 0.00 3.33
2530 3548 7.934665 GGTTTATTGGTCCCTTTTGTAATTTGT 59.065 33.333 0.00 0.00 0.00 2.83
2531 3549 7.934120 TGGTTTATTGGTCCCTTTTGTAATTTG 59.066 33.333 0.00 0.00 0.00 2.32
2532 3550 8.035448 TGGTTTATTGGTCCCTTTTGTAATTT 57.965 30.769 0.00 0.00 0.00 1.82
2533 3551 7.256511 CCTGGTTTATTGGTCCCTTTTGTAATT 60.257 37.037 0.00 0.00 0.00 1.40
2534 3552 6.212589 CCTGGTTTATTGGTCCCTTTTGTAAT 59.787 38.462 0.00 0.00 0.00 1.89
2535 3553 5.540719 CCTGGTTTATTGGTCCCTTTTGTAA 59.459 40.000 0.00 0.00 0.00 2.41
2536 3554 5.081032 CCTGGTTTATTGGTCCCTTTTGTA 58.919 41.667 0.00 0.00 0.00 2.41
2537 3555 3.901222 CCTGGTTTATTGGTCCCTTTTGT 59.099 43.478 0.00 0.00 0.00 2.83
2538 3556 4.156477 TCCTGGTTTATTGGTCCCTTTTG 58.844 43.478 0.00 0.00 0.00 2.44
2539 3557 4.479156 TCCTGGTTTATTGGTCCCTTTT 57.521 40.909 0.00 0.00 0.00 2.27
2540 3558 4.352893 CATCCTGGTTTATTGGTCCCTTT 58.647 43.478 0.00 0.00 0.00 3.11
2541 3559 3.309848 CCATCCTGGTTTATTGGTCCCTT 60.310 47.826 0.00 0.00 31.35 3.95
2542 3560 2.244769 CCATCCTGGTTTATTGGTCCCT 59.755 50.000 0.00 0.00 31.35 4.20
2543 3561 2.243736 TCCATCCTGGTTTATTGGTCCC 59.756 50.000 0.00 0.00 39.03 4.46
2544 3562 3.555966 CTCCATCCTGGTTTATTGGTCC 58.444 50.000 0.00 0.00 39.03 4.46
2545 3563 3.053619 ACCTCCATCCTGGTTTATTGGTC 60.054 47.826 0.00 0.00 39.03 4.02
2546 3564 2.926329 ACCTCCATCCTGGTTTATTGGT 59.074 45.455 0.00 0.00 39.03 3.67
2547 3565 3.669939 ACCTCCATCCTGGTTTATTGG 57.330 47.619 0.00 0.00 39.03 3.16
2548 3566 5.373812 ACTACCTCCATCCTGGTTTATTG 57.626 43.478 0.00 0.00 39.03 1.90
2549 3567 5.968167 TGTACTACCTCCATCCTGGTTTATT 59.032 40.000 0.00 0.00 39.03 1.40
2550 3568 5.535029 TGTACTACCTCCATCCTGGTTTAT 58.465 41.667 0.00 0.00 39.03 1.40
2551 3569 4.950361 TGTACTACCTCCATCCTGGTTTA 58.050 43.478 0.00 0.00 39.03 2.01
2552 3570 3.798515 TGTACTACCTCCATCCTGGTTT 58.201 45.455 0.00 0.00 39.03 3.27
2553 3571 3.484953 TGTACTACCTCCATCCTGGTT 57.515 47.619 0.00 0.00 39.03 3.67
2554 3572 3.309296 CATGTACTACCTCCATCCTGGT 58.691 50.000 0.00 0.00 39.03 4.00
2555 3573 2.037772 GCATGTACTACCTCCATCCTGG 59.962 54.545 0.00 0.00 39.43 4.45
2556 3574 2.968574 AGCATGTACTACCTCCATCCTG 59.031 50.000 0.00 0.00 0.00 3.86
2557 3575 3.336509 AGCATGTACTACCTCCATCCT 57.663 47.619 0.00 0.00 0.00 3.24
2558 3576 4.381411 GAAAGCATGTACTACCTCCATCC 58.619 47.826 0.00 0.00 0.00 3.51
2559 3577 4.381411 GGAAAGCATGTACTACCTCCATC 58.619 47.826 0.00 0.00 0.00 3.51
2560 3578 3.136626 GGGAAAGCATGTACTACCTCCAT 59.863 47.826 0.00 0.00 0.00 3.41
2561 3579 2.504175 GGGAAAGCATGTACTACCTCCA 59.496 50.000 0.00 0.00 0.00 3.86
2562 3580 2.772515 AGGGAAAGCATGTACTACCTCC 59.227 50.000 0.00 0.00 0.00 4.30
2563 3581 3.197983 ACAGGGAAAGCATGTACTACCTC 59.802 47.826 0.00 0.00 0.00 3.85
2564 3582 3.182152 ACAGGGAAAGCATGTACTACCT 58.818 45.455 0.00 0.00 0.00 3.08
2565 3583 3.629142 ACAGGGAAAGCATGTACTACC 57.371 47.619 0.00 0.00 0.00 3.18
2566 3584 7.073342 CTTTTACAGGGAAAGCATGTACTAC 57.927 40.000 0.00 0.00 0.00 2.73
2585 3603 3.088532 CCACAACCTGCTATGGCTTTTA 58.911 45.455 1.68 0.00 39.59 1.52
2591 3609 0.322816 AGCACCACAACCTGCTATGG 60.323 55.000 0.00 0.00 42.07 2.74
2609 3627 1.961277 GCGTGTTGTGTCCTCCCAG 60.961 63.158 0.00 0.00 0.00 4.45
2626 3644 3.000825 CGGTAAACTGTTTTGGCTTTTGC 59.999 43.478 11.48 0.00 46.64 3.68
2641 3659 6.369615 TCATACTAAAAGCTGGAACGGTAAAC 59.630 38.462 0.00 0.00 36.83 2.01
2647 3665 7.772332 ATAGTTCATACTAAAAGCTGGAACG 57.228 36.000 0.00 0.00 40.14 3.95
2763 3790 8.103948 ACAATTTCAGATTAGGACACTTCTTG 57.896 34.615 0.00 0.00 0.00 3.02
2849 3877 7.827236 TCGTATTGTACAATTCTCCTCCATTTT 59.173 33.333 25.31 0.25 32.50 1.82
2979 4015 3.016736 CCGTAATGCTTCACCCATCTTT 58.983 45.455 0.00 0.00 0.00 2.52
3129 4165 6.093219 CACATTTAGATTGGTCAGACCTCTTG 59.907 42.308 20.82 12.72 39.58 3.02
3190 4228 5.182487 TGTTGAATAACATGCGGATGTACT 58.818 37.500 23.47 11.17 42.30 2.73
3289 4329 3.913548 TTGGTCATGTGAAAATGGTCG 57.086 42.857 0.00 0.00 0.00 4.79
3361 4434 9.408648 TCCTGTCAGAAATATAAGAATTTTCCC 57.591 33.333 0.00 0.00 31.25 3.97
3383 4456 5.129485 TGCTCTCCCTAAATTTACTCTCCTG 59.871 44.000 0.00 0.00 0.00 3.86
3384 4457 5.281314 TGCTCTCCCTAAATTTACTCTCCT 58.719 41.667 0.00 0.00 0.00 3.69
3387 4460 8.554490 TTATCTGCTCTCCCTAAATTTACTCT 57.446 34.615 0.00 0.00 0.00 3.24
3512 4597 3.526931 AGTTGGTACTGGTCATGATCG 57.473 47.619 0.00 0.00 31.99 3.69
3523 4609 6.009908 ACCACCTCTTTTTAAGTTGGTACT 57.990 37.500 0.00 0.00 36.30 2.73
3556 4642 0.310543 TGTTCTTGCGAATGTGGCAC 59.689 50.000 11.55 11.55 40.71 5.01
3566 4652 3.243035 TGGAAGTGAACAATGTTCTTGCG 60.243 43.478 24.30 0.00 31.07 4.85
3567 4653 4.305989 TGGAAGTGAACAATGTTCTTGC 57.694 40.909 24.30 17.11 0.00 4.01
3586 5350 9.811655 GATTTTTGATACATCACGTACATATGG 57.188 33.333 7.80 0.00 36.36 2.74
3589 5353 8.547894 GCTGATTTTTGATACATCACGTACATA 58.452 33.333 0.00 0.00 36.36 2.29
3590 5354 7.280876 AGCTGATTTTTGATACATCACGTACAT 59.719 33.333 0.00 0.00 36.36 2.29
3860 5630 9.151471 GATACTTCTGCAACAGTAATTAGTTGA 57.849 33.333 17.35 5.99 46.01 3.18
4021 5798 2.224597 ACTCACTGCATCCATTGTGTCA 60.225 45.455 1.97 0.00 0.00 3.58
4141 5931 9.904732 ACCATATCTGCAGGAACCTATATATAT 57.095 33.333 15.13 2.77 0.00 0.86
4271 6061 1.669115 CCCAGCACACGTCCTCAAG 60.669 63.158 0.00 0.00 0.00 3.02
4281 6071 4.464008 GATGGAGAAATAATCCCAGCACA 58.536 43.478 0.00 0.00 35.85 4.57
4282 6072 3.823304 GGATGGAGAAATAATCCCAGCAC 59.177 47.826 0.00 0.00 36.85 4.40
4294 6084 0.546122 CACGGGGATGGATGGAGAAA 59.454 55.000 0.00 0.00 0.00 2.52
4333 6123 4.222145 ACGTATGGCCTTCTGTTTTCTAGA 59.778 41.667 3.32 0.00 0.00 2.43
4336 6126 3.074412 CACGTATGGCCTTCTGTTTTCT 58.926 45.455 3.32 0.00 0.00 2.52
4442 6233 4.406326 ACACCATATTGGGATGTACGTACA 59.594 41.667 29.15 29.15 43.37 2.90
4519 6316 1.452110 ATACGCTCACTGCATGCAAA 58.548 45.000 22.88 9.27 43.06 3.68
4535 6332 5.182570 GGGAAAACAACCCACAGAGTAATAC 59.817 44.000 0.00 0.00 46.05 1.89
4563 6360 3.064271 TCTTCGGTTGTGCTTGTTGTAAC 59.936 43.478 0.00 0.00 0.00 2.50
4595 6392 3.341823 ACAGCTTGACCAAGAGCATTAG 58.658 45.455 13.44 0.00 41.31 1.73
4650 6447 1.883926 GTAACACGGGCAGAAAATGGT 59.116 47.619 0.00 0.00 0.00 3.55
4727 6525 2.067365 AGTTGGGGTCAAACAAGGTC 57.933 50.000 0.00 0.00 34.28 3.85
4743 6541 8.208224 TGGATCAACATATATACGGACAAAGTT 58.792 33.333 0.00 0.00 0.00 2.66
4771 6791 9.801873 TTTAGGAACAAGAACATCAAAGAAAAG 57.198 29.630 0.00 0.00 0.00 2.27
4791 6813 5.827797 AGTTTGTGTCATCAAAGCTTTAGGA 59.172 36.000 12.25 6.53 37.87 2.94
4795 6817 7.319646 TGTTAAGTTTGTGTCATCAAAGCTTT 58.680 30.769 5.69 5.69 37.87 3.51
4940 6962 0.528470 TTCCCTTATTTTTGCGGCCG 59.472 50.000 24.05 24.05 0.00 6.13
4984 7006 9.933240 ATCCTTCATTTCAAGAATAGGAAGATT 57.067 29.630 14.71 4.99 0.00 2.40
5001 7023 6.189859 TGGAGAACAATGCTTATCCTTCATT 58.810 36.000 9.41 0.00 33.37 2.57
5071 7094 4.202441 AGATCACATGGTTGTATGCCTTC 58.798 43.478 0.00 0.00 33.76 3.46
5141 7164 1.184970 ACATCCAAAAAGCACCGGGG 61.185 55.000 6.32 0.84 0.00 5.73
5145 7168 5.132897 TGTTATCACATCCAAAAAGCACC 57.867 39.130 0.00 0.00 0.00 5.01
5176 7199 0.667184 GTTCCGCAGCATTGGTTTGG 60.667 55.000 0.00 0.00 0.00 3.28
5183 7206 0.955428 ATGACACGTTCCGCAGCATT 60.955 50.000 0.00 0.00 0.00 3.56
5213 7236 8.860780 AATGATGCCTCTATTTCTTCCTTATC 57.139 34.615 0.00 0.00 0.00 1.75
5225 7248 6.204852 TGTGGGAATAAATGATGCCTCTAT 57.795 37.500 0.00 0.00 32.84 1.98
5226 7249 5.645056 TGTGGGAATAAATGATGCCTCTA 57.355 39.130 0.00 0.00 32.84 2.43
5251 7274 1.872773 AGGACCATCTGTTCTCCCTC 58.127 55.000 0.00 0.00 0.00 4.30
5269 7292 4.503296 GGTGACATATAGGGTGCCAAGTAG 60.503 50.000 0.00 0.00 0.00 2.57
5272 7295 2.806745 CGGTGACATATAGGGTGCCAAG 60.807 54.545 0.00 0.00 0.00 3.61
5307 7330 8.095792 CCCAAATATTGAATGGCATGCTTTATA 58.904 33.333 18.92 7.97 32.71 0.98
5309 7332 6.289834 CCCAAATATTGAATGGCATGCTTTA 58.710 36.000 18.92 4.93 32.71 1.85
5311 7334 4.445162 CCCCAAATATTGAATGGCATGCTT 60.445 41.667 18.92 4.50 32.71 3.91
5312 7335 3.071892 CCCCAAATATTGAATGGCATGCT 59.928 43.478 18.92 0.00 32.71 3.79
5313 7336 3.181452 ACCCCAAATATTGAATGGCATGC 60.181 43.478 9.90 9.90 32.71 4.06
5314 7337 4.634199 GACCCCAAATATTGAATGGCATG 58.366 43.478 0.00 0.00 32.71 4.06
5315 7338 3.321682 CGACCCCAAATATTGAATGGCAT 59.678 43.478 0.00 0.00 32.71 4.40
5317 7340 2.693074 ACGACCCCAAATATTGAATGGC 59.307 45.455 0.00 0.00 32.71 4.40
5318 7341 3.951037 TCACGACCCCAAATATTGAATGG 59.049 43.478 0.00 0.00 0.00 3.16
5319 7342 5.574891 TTCACGACCCCAAATATTGAATG 57.425 39.130 0.00 0.00 0.00 2.67
5320 7343 7.889873 TTATTCACGACCCCAAATATTGAAT 57.110 32.000 0.00 0.00 36.46 2.57
5321 7344 7.889873 ATTATTCACGACCCCAAATATTGAA 57.110 32.000 0.00 0.00 0.00 2.69
5322 7345 9.581289 AATATTATTCACGACCCCAAATATTGA 57.419 29.630 0.00 0.00 30.73 2.57
5323 7346 9.624697 CAATATTATTCACGACCCCAAATATTG 57.375 33.333 9.29 9.29 38.45 1.90
5324 7347 9.362151 ACAATATTATTCACGACCCCAAATATT 57.638 29.630 0.00 0.00 31.54 1.28
5325 7348 8.792633 CACAATATTATTCACGACCCCAAATAT 58.207 33.333 0.00 0.00 0.00 1.28
5326 7349 7.255312 GCACAATATTATTCACGACCCCAAATA 60.255 37.037 0.00 0.00 0.00 1.40
5383 7406 6.843752 TCTTAGTACCCTTCAACCAAAATGA 58.156 36.000 0.00 0.00 0.00 2.57
5386 7409 5.067954 GCTCTTAGTACCCTTCAACCAAAA 58.932 41.667 0.00 0.00 0.00 2.44
5527 7552 4.293648 GTTTTTGCCGCGCCCCTT 62.294 61.111 0.00 0.00 0.00 3.95
5667 7709 4.798682 GCGAGGGGGAGAGGGGAA 62.799 72.222 0.00 0.00 0.00 3.97
5718 7769 4.408821 TTTCGGCATGCTCCCGCT 62.409 61.111 18.92 0.00 45.19 5.52
5783 7849 0.539438 ATTCGCAACTTTCTGGCCCA 60.539 50.000 0.00 0.00 0.00 5.36
5789 7855 1.461127 GTCGCAGATTCGCAACTTTCT 59.539 47.619 0.00 0.00 40.67 2.52
5800 7866 0.181350 GGGATGAAGGGTCGCAGATT 59.819 55.000 0.00 0.00 40.67 2.40
5808 7874 3.411517 CCGCCTGGGATGAAGGGT 61.412 66.667 0.00 0.00 38.47 4.34
5858 7924 4.680237 CCACTCCGTCGCTTGGCA 62.680 66.667 0.00 0.00 0.00 4.92
5887 7953 1.810030 CTTGACGGGGCTAAGCGAC 60.810 63.158 0.00 0.00 0.00 5.19
5892 7958 2.975536 CGACCTTGACGGGGCTAA 59.024 61.111 0.00 0.00 36.97 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.