Multiple sequence alignment - TraesCS5A01G362600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G362600 chr5A 100.000 4517 0 0 1 4517 563458212 563453696 0.000000e+00 8342.0
1 TraesCS5A01G362600 chr5A 96.462 3703 102 13 564 4238 563518821 563515120 0.000000e+00 6085.0
2 TraesCS5A01G362600 chr5A 96.451 3691 113 11 564 4238 563500309 563496621 0.000000e+00 6074.0
3 TraesCS5A01G362600 chr5A 96.402 3697 110 10 564 4238 563509561 563505866 0.000000e+00 6069.0
4 TraesCS5A01G362600 chr5A 95.399 3108 102 16 564 3652 563548544 563545459 0.000000e+00 4909.0
5 TraesCS5A01G362600 chr5A 94.869 2436 84 11 2122 4517 563568029 563565595 0.000000e+00 3768.0
6 TraesCS5A01G362600 chr5A 95.978 2039 68 8 2211 4238 563483688 563481653 0.000000e+00 3299.0
7 TraesCS5A01G362600 chr5A 97.169 1625 45 1 564 2187 563485308 563483684 0.000000e+00 2745.0
8 TraesCS5A01G362600 chr5A 95.260 1519 58 4 564 2074 563569540 563568028 0.000000e+00 2394.0
9 TraesCS5A01G362600 chr5A 86.531 1032 130 6 576 1600 563553876 563552847 0.000000e+00 1127.0
10 TraesCS5A01G362600 chr5A 86.224 1038 132 8 570 1600 563591899 563590866 0.000000e+00 1114.0
11 TraesCS5A01G362600 chr5A 85.963 1033 135 6 576 1600 563481497 563480467 0.000000e+00 1096.0
12 TraesCS5A01G362600 chr5A 85.963 1033 132 9 576 1600 563505721 563504694 0.000000e+00 1092.0
13 TraesCS5A01G362600 chr5A 97.880 566 10 2 1 565 563500824 563500260 0.000000e+00 977.0
14 TraesCS5A01G362600 chr5A 97.880 566 11 1 1 565 563510077 563509512 0.000000e+00 977.0
15 TraesCS5A01G362600 chr5A 97.715 569 9 2 1 565 563491566 563490998 0.000000e+00 976.0
16 TraesCS5A01G362600 chr5A 97.707 567 11 2 1 565 563519338 563518772 0.000000e+00 974.0
17 TraesCS5A01G362600 chr5A 96.996 566 16 1 1 565 563485824 563485259 0.000000e+00 950.0
18 TraesCS5A01G362600 chr5A 96.649 567 16 3 1 565 563549688 563549123 0.000000e+00 939.0
19 TraesCS5A01G362600 chr5A 95.093 591 24 2 3931 4517 563545462 563544873 0.000000e+00 926.0
20 TraesCS5A01G362600 chr5A 94.885 567 17 6 2 565 563570048 563569491 0.000000e+00 876.0
21 TraesCS5A01G362600 chr5A 96.990 299 9 0 267 565 563548793 563548495 1.880000e-138 503.0
22 TraesCS5A01G362600 chr5A 96.708 243 8 0 3996 4238 563490632 563490390 5.440000e-109 405.0
23 TraesCS5A01G362600 chr5A 87.915 331 38 1 234 562 563556521 563556191 5.480000e-104 388.0
24 TraesCS5A01G362600 chr5A 87.048 332 42 1 234 565 563554169 563553839 1.530000e-99 374.0
25 TraesCS5A01G362600 chr5A 86.747 332 44 0 234 565 563592187 563591856 1.980000e-98 370.0
26 TraesCS5A01G362600 chr2B 77.053 1595 309 42 1108 2681 9199059 9197501 0.000000e+00 865.0
27 TraesCS5A01G362600 chr2B 82.261 637 107 4 2021 2654 64855 65488 3.070000e-151 545.0
28 TraesCS5A01G362600 chr2A 76.805 1565 317 35 1105 2654 2876195 2877728 0.000000e+00 837.0
29 TraesCS5A01G362600 chr2D 75.923 1462 296 34 1201 2649 2688705 2687287 0.000000e+00 699.0
30 TraesCS5A01G362600 chr2D 92.079 202 15 1 3922 4122 34361367 34361568 2.660000e-72 283.0
31 TraesCS5A01G362600 chr5D 93.841 276 13 1 4246 4517 490209095 490209370 3.250000e-111 412.0
32 TraesCS5A01G362600 chr5D 92.937 269 17 1 4251 4517 221595317 221595049 1.520000e-104 390.0
33 TraesCS5A01G362600 chr5B 93.141 277 14 2 4245 4517 522024505 522024230 7.040000e-108 401.0
34 TraesCS5A01G362600 chr5B 91.489 47 3 1 189 234 565919452 565919498 3.770000e-06 63.9
35 TraesCS5A01G362600 chr3D 93.040 273 17 1 4247 4517 885909 885637 9.100000e-107 398.0
36 TraesCS5A01G362600 chr3D 94.059 202 11 1 3922 4122 500551045 500550844 5.680000e-79 305.0
37 TraesCS5A01G362600 chr6B 92.171 281 17 2 4242 4517 707382982 707383262 4.240000e-105 392.0
38 TraesCS5A01G362600 chr1B 92.086 278 18 1 4244 4517 559145664 559145941 5.480000e-104 388.0
39 TraesCS5A01G362600 chr1B 91.367 278 20 1 4244 4517 559138740 559139017 1.190000e-100 377.0
40 TraesCS5A01G362600 chr4B 92.040 201 16 0 3922 4122 586242862 586242662 2.660000e-72 283.0
41 TraesCS5A01G362600 chr3A 88.511 235 17 4 1 234 737840323 737840548 4.450000e-70 276.0
42 TraesCS5A01G362600 chr3A 88.511 235 16 5 1 234 737831665 737831889 1.600000e-69 274.0
43 TraesCS5A01G362600 chr7A 97.297 37 1 0 198 234 672449003 672448967 3.770000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G362600 chr5A 563453696 563458212 4516 True 8342.000000 8342 100.000000 1 4517 1 chr5A.!!$R1 4516
1 TraesCS5A01G362600 chr5A 563515120 563519338 4218 True 3529.500000 6085 97.084500 1 4238 2 chr5A.!!$R5 4237
2 TraesCS5A01G362600 chr5A 563496621 563510077 13456 True 3037.800000 6074 94.915200 1 4238 5 chr5A.!!$R4 4237
3 TraesCS5A01G362600 chr5A 563565595 563570048 4453 True 2346.000000 3768 95.004667 2 4517 3 chr5A.!!$R7 4515
4 TraesCS5A01G362600 chr5A 563480467 563485824 5357 True 2022.500000 3299 94.026500 1 4238 4 chr5A.!!$R2 4237
5 TraesCS5A01G362600 chr5A 563544873 563556521 11648 True 1309.428571 4909 92.232143 1 4517 7 chr5A.!!$R6 4516
6 TraesCS5A01G362600 chr5A 563590866 563592187 1321 True 742.000000 1114 86.485500 234 1600 2 chr5A.!!$R8 1366
7 TraesCS5A01G362600 chr5A 563490390 563491566 1176 True 690.500000 976 97.211500 1 4238 2 chr5A.!!$R3 4237
8 TraesCS5A01G362600 chr2B 9197501 9199059 1558 True 865.000000 865 77.053000 1108 2681 1 chr2B.!!$R1 1573
9 TraesCS5A01G362600 chr2B 64855 65488 633 False 545.000000 545 82.261000 2021 2654 1 chr2B.!!$F1 633
10 TraesCS5A01G362600 chr2A 2876195 2877728 1533 False 837.000000 837 76.805000 1105 2654 1 chr2A.!!$F1 1549
11 TraesCS5A01G362600 chr2D 2687287 2688705 1418 True 699.000000 699 75.923000 1201 2649 1 chr2D.!!$R1 1448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 8064 0.245539 CGGTAGCTCGTGGGAAGAAA 59.754 55.000 0.00 0.0 0.00 2.52 F
978 8468 1.098869 AACAACGTGCACCACAATGA 58.901 45.000 12.15 0.0 33.40 2.57 F
1551 9047 1.017177 TATGGCAACTTGCGGTCGTC 61.017 55.000 7.67 0.0 46.21 4.20 F
2601 10106 4.599241 AGCCCAAGCCATCTTGTATACTAT 59.401 41.667 4.17 0.0 46.33 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 9047 0.038744 AGGCCATTCTCCACCTTGTG 59.961 55.000 5.01 0.00 0.00 3.33 R
2685 10191 0.682209 CTGGGAAGAACCATGCAGGG 60.682 60.000 17.55 17.55 43.89 4.45 R
2838 10344 0.753262 TTCCGAGGCAAGCTATCCTC 59.247 55.000 19.19 19.19 44.14 3.71 R
4404 21231 1.202440 GCCCACGGTTCGTCATATGTA 60.202 52.381 1.90 0.00 38.32 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 6879 6.285990 TCCACAAACCTTTAGTACACTTCTC 58.714 40.000 0.00 0.00 0.00 2.87
193 7030 4.892934 AGCAATTGGGTTAGAAAAGTGTGA 59.107 37.500 7.72 0.00 0.00 3.58
560 8029 3.136992 TGGGAAGAAAACCCTCTACGTTT 59.863 43.478 0.00 0.00 46.82 3.60
561 8030 4.347583 TGGGAAGAAAACCCTCTACGTTTA 59.652 41.667 0.00 0.00 46.82 2.01
562 8031 4.692625 GGGAAGAAAACCCTCTACGTTTAC 59.307 45.833 0.00 0.00 43.65 2.01
563 8032 5.299949 GGAAGAAAACCCTCTACGTTTACA 58.700 41.667 0.00 0.00 33.17 2.41
564 8033 5.936372 GGAAGAAAACCCTCTACGTTTACAT 59.064 40.000 0.00 0.00 33.17 2.29
565 8034 6.128363 GGAAGAAAACCCTCTACGTTTACATG 60.128 42.308 0.00 0.00 33.17 3.21
566 8035 5.861727 AGAAAACCCTCTACGTTTACATGT 58.138 37.500 2.69 2.69 33.17 3.21
567 8036 5.699458 AGAAAACCCTCTACGTTTACATGTG 59.301 40.000 9.11 0.00 33.17 3.21
568 8037 4.877378 AACCCTCTACGTTTACATGTGA 57.123 40.909 9.11 0.00 0.00 3.58
569 8038 4.184079 ACCCTCTACGTTTACATGTGAC 57.816 45.455 9.11 6.37 0.00 3.67
570 8039 3.056322 ACCCTCTACGTTTACATGTGACC 60.056 47.826 9.11 0.00 0.00 4.02
571 8040 3.176708 CCTCTACGTTTACATGTGACCG 58.823 50.000 9.11 7.39 0.00 4.79
572 8041 3.119743 CCTCTACGTTTACATGTGACCGA 60.120 47.826 14.35 5.35 0.00 4.69
573 8042 4.439700 CCTCTACGTTTACATGTGACCGAT 60.440 45.833 14.35 1.92 0.00 4.18
574 8043 5.220912 CCTCTACGTTTACATGTGACCGATA 60.221 44.000 14.35 2.91 0.00 2.92
575 8044 5.572211 TCTACGTTTACATGTGACCGATAC 58.428 41.667 14.35 0.00 0.00 2.24
576 8045 3.514645 ACGTTTACATGTGACCGATACC 58.485 45.455 14.35 0.00 0.00 2.73
577 8046 2.532723 CGTTTACATGTGACCGATACCG 59.467 50.000 9.11 0.00 0.00 4.02
587 8056 4.916412 CGATACCGGTAGCTCGTG 57.084 61.111 26.10 8.13 0.00 4.35
588 8057 1.281960 CGATACCGGTAGCTCGTGG 59.718 63.158 26.10 7.75 0.00 4.94
589 8058 1.658673 GATACCGGTAGCTCGTGGG 59.341 63.158 22.43 0.00 0.00 4.61
590 8059 0.820891 GATACCGGTAGCTCGTGGGA 60.821 60.000 22.43 0.00 0.00 4.37
591 8060 0.396139 ATACCGGTAGCTCGTGGGAA 60.396 55.000 20.91 0.00 0.00 3.97
592 8061 1.033746 TACCGGTAGCTCGTGGGAAG 61.034 60.000 11.16 0.00 0.00 3.46
593 8062 2.050350 CCGGTAGCTCGTGGGAAGA 61.050 63.158 0.00 0.00 0.00 2.87
594 8063 1.601419 CCGGTAGCTCGTGGGAAGAA 61.601 60.000 0.00 0.00 0.00 2.52
595 8064 0.245539 CGGTAGCTCGTGGGAAGAAA 59.754 55.000 0.00 0.00 0.00 2.52
596 8065 1.337447 CGGTAGCTCGTGGGAAGAAAA 60.337 52.381 0.00 0.00 0.00 2.29
597 8066 2.074576 GGTAGCTCGTGGGAAGAAAAC 58.925 52.381 0.00 0.00 0.00 2.43
598 8067 2.289506 GGTAGCTCGTGGGAAGAAAACT 60.290 50.000 0.00 0.00 0.00 2.66
599 8068 2.171341 AGCTCGTGGGAAGAAAACTC 57.829 50.000 0.00 0.00 0.00 3.01
600 8069 1.694696 AGCTCGTGGGAAGAAAACTCT 59.305 47.619 0.00 0.00 0.00 3.24
601 8070 2.070028 GCTCGTGGGAAGAAAACTCTC 58.930 52.381 0.00 0.00 0.00 3.20
602 8071 2.289133 GCTCGTGGGAAGAAAACTCTCT 60.289 50.000 0.00 0.00 0.00 3.10
603 8072 3.056749 GCTCGTGGGAAGAAAACTCTCTA 60.057 47.826 0.00 0.00 0.00 2.43
604 8073 4.487019 CTCGTGGGAAGAAAACTCTCTAC 58.513 47.826 0.00 0.00 0.00 2.59
605 8074 3.057736 TCGTGGGAAGAAAACTCTCTACG 60.058 47.826 0.00 0.00 0.00 3.51
606 8075 3.305199 CGTGGGAAGAAAACTCTCTACGT 60.305 47.826 0.00 0.00 0.00 3.57
607 8076 4.629092 GTGGGAAGAAAACTCTCTACGTT 58.371 43.478 0.00 0.00 0.00 3.99
664 8133 6.729690 TTCAACTTCCAAGTTCCATGAAAT 57.270 33.333 1.52 0.00 45.65 2.17
869 8344 3.499918 AGTGCGATTTGGAGACTTTTCTG 59.500 43.478 0.00 0.00 29.47 3.02
956 8446 3.633525 AGTCAACATGCACTTCACAATGT 59.366 39.130 0.00 0.00 0.00 2.71
978 8468 1.098869 AACAACGTGCACCACAATGA 58.901 45.000 12.15 0.00 33.40 2.57
1208 8704 2.038820 CCCAACAATGCTTCCCACAAAT 59.961 45.455 0.00 0.00 0.00 2.32
1251 8747 2.045926 CCTTCCTGGCCAACTCCG 60.046 66.667 7.01 0.00 0.00 4.63
1274 8770 5.659463 GACAACTTGCATGACTATCTCTCT 58.341 41.667 6.60 0.00 0.00 3.10
1551 9047 1.017177 TATGGCAACTTGCGGTCGTC 61.017 55.000 7.67 0.00 46.21 4.20
2601 10106 4.599241 AGCCCAAGCCATCTTGTATACTAT 59.401 41.667 4.17 0.00 46.33 2.12
2685 10191 7.013559 TCCTTGTGTTTAAACTTACTTAAGGGC 59.986 37.037 18.72 0.00 37.62 5.19
2838 10344 1.528292 GGGACGAGGATGAGGATCGG 61.528 65.000 0.00 0.00 40.67 4.18
2919 10425 0.883833 CCTGGTTGTGGATGTGCTTC 59.116 55.000 0.00 0.00 0.00 3.86
2967 10473 9.605275 CTCATGGTTTCTACTTAGAATCAATCA 57.395 33.333 0.00 0.00 41.52 2.57
3078 10586 2.334946 GCGCACCAGCTCCATGAAA 61.335 57.895 0.30 0.00 39.10 2.69
3122 10630 3.759815 ATCTACTCCACTGGTACCACT 57.240 47.619 11.60 0.00 0.00 4.00
3138 10646 6.653320 TGGTACCACTTTTTAGACATTAGCAG 59.347 38.462 11.60 0.00 0.00 4.24
3169 10687 1.885887 ACACACACAGAGAGAGAGAGC 59.114 52.381 0.00 0.00 0.00 4.09
3170 10688 1.885233 CACACACAGAGAGAGAGAGCA 59.115 52.381 0.00 0.00 0.00 4.26
3173 10728 3.243704 ACACACAGAGAGAGAGAGCAAAC 60.244 47.826 0.00 0.00 0.00 2.93
3322 10878 7.970614 GTGGAATCAACATCTATTTTGAAGGAC 59.029 37.037 0.00 0.00 35.42 3.85
3627 11197 6.423302 AGCGAGAAATGAGCACTCTATATTTG 59.577 38.462 0.00 0.00 0.00 2.32
3742 11318 6.801539 AACTTGACATAAGCAAGAATTCGA 57.198 33.333 10.00 0.00 44.16 3.71
3776 11352 6.790232 TTGGAGTCCAAAGTTCTTTTTCAT 57.210 33.333 22.59 0.00 40.92 2.57
3830 11407 3.292460 CATGGGCGGGAATAAACCTAAA 58.708 45.455 0.00 0.00 0.00 1.85
4103 20926 7.492020 TCCTTAATCAATGAAAATGGCAAATCG 59.508 33.333 0.00 0.00 0.00 3.34
4104 20927 5.473796 AATCAATGAAAATGGCAAATCGC 57.526 34.783 0.00 0.00 41.28 4.58
4226 21049 2.444895 GAGCGGGAGGAGGGTCAT 60.445 66.667 0.00 0.00 0.00 3.06
4268 21091 1.541588 CCGAAAAAGGCTTTCTCCCTG 59.458 52.381 13.76 0.00 31.73 4.45
4404 21231 1.612463 ACTACGCGAAGAGGTGAAACT 59.388 47.619 15.93 0.00 36.74 2.66
4467 21294 4.057428 GACGACACCAGAGCGCCT 62.057 66.667 2.29 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
570 8039 1.281960 CCACGAGCTACCGGTATCG 59.718 63.158 27.75 27.75 40.86 2.92
571 8040 0.820891 TCCCACGAGCTACCGGTATC 60.821 60.000 16.25 11.57 0.00 2.24
572 8041 0.396139 TTCCCACGAGCTACCGGTAT 60.396 55.000 16.25 0.00 0.00 2.73
573 8042 1.001020 TTCCCACGAGCTACCGGTA 60.001 57.895 14.95 14.95 0.00 4.02
574 8043 2.283388 TTCCCACGAGCTACCGGT 60.283 61.111 13.98 13.98 0.00 5.28
575 8044 1.601419 TTCTTCCCACGAGCTACCGG 61.601 60.000 0.00 0.00 0.00 5.28
576 8045 0.245539 TTTCTTCCCACGAGCTACCG 59.754 55.000 0.00 0.00 0.00 4.02
577 8046 2.074576 GTTTTCTTCCCACGAGCTACC 58.925 52.381 0.00 0.00 0.00 3.18
578 8047 2.994578 GAGTTTTCTTCCCACGAGCTAC 59.005 50.000 0.00 0.00 0.00 3.58
579 8048 2.897969 AGAGTTTTCTTCCCACGAGCTA 59.102 45.455 0.00 0.00 0.00 3.32
580 8049 1.694696 AGAGTTTTCTTCCCACGAGCT 59.305 47.619 0.00 0.00 0.00 4.09
581 8050 2.070028 GAGAGTTTTCTTCCCACGAGC 58.930 52.381 0.00 0.00 32.53 5.03
582 8051 3.669251 AGAGAGTTTTCTTCCCACGAG 57.331 47.619 0.00 0.00 32.53 4.18
583 8052 3.057736 CGTAGAGAGTTTTCTTCCCACGA 60.058 47.826 0.00 0.00 32.53 4.35
584 8053 3.243336 CGTAGAGAGTTTTCTTCCCACG 58.757 50.000 0.00 0.00 32.53 4.94
585 8054 4.254402 ACGTAGAGAGTTTTCTTCCCAC 57.746 45.455 0.00 0.00 32.53 4.61
586 8055 4.950205 AACGTAGAGAGTTTTCTTCCCA 57.050 40.909 0.00 0.00 32.53 4.37
587 8056 6.218746 TGTAAACGTAGAGAGTTTTCTTCCC 58.781 40.000 0.00 0.00 41.44 3.97
588 8057 7.063191 GGATGTAAACGTAGAGAGTTTTCTTCC 59.937 40.741 13.25 13.25 41.25 3.46
589 8058 7.597743 TGGATGTAAACGTAGAGAGTTTTCTTC 59.402 37.037 0.00 3.57 41.44 2.87
590 8059 7.439381 TGGATGTAAACGTAGAGAGTTTTCTT 58.561 34.615 0.00 0.00 41.44 2.52
591 8060 6.989659 TGGATGTAAACGTAGAGAGTTTTCT 58.010 36.000 0.00 0.00 41.44 2.52
592 8061 7.253684 CGATGGATGTAAACGTAGAGAGTTTTC 60.254 40.741 0.00 0.00 41.44 2.29
593 8062 6.530534 CGATGGATGTAAACGTAGAGAGTTTT 59.469 38.462 0.00 0.00 41.44 2.43
594 8063 6.034591 CGATGGATGTAAACGTAGAGAGTTT 58.965 40.000 0.00 0.08 43.34 2.66
595 8064 5.125097 ACGATGGATGTAAACGTAGAGAGTT 59.875 40.000 0.00 0.00 35.49 3.01
596 8065 4.639310 ACGATGGATGTAAACGTAGAGAGT 59.361 41.667 0.00 0.00 35.49 3.24
597 8066 4.970611 CACGATGGATGTAAACGTAGAGAG 59.029 45.833 0.00 0.00 35.78 3.20
598 8067 4.637091 TCACGATGGATGTAAACGTAGAGA 59.363 41.667 0.00 0.00 35.78 3.10
599 8068 4.916870 TCACGATGGATGTAAACGTAGAG 58.083 43.478 0.00 0.00 35.78 2.43
600 8069 4.968812 TCACGATGGATGTAAACGTAGA 57.031 40.909 0.00 0.00 35.78 2.59
601 8070 5.278604 TGATCACGATGGATGTAAACGTAG 58.721 41.667 0.00 0.00 35.78 3.51
602 8071 5.251601 TGATCACGATGGATGTAAACGTA 57.748 39.130 0.00 0.00 35.78 3.57
603 8072 4.118093 TGATCACGATGGATGTAAACGT 57.882 40.909 0.00 0.00 37.68 3.99
604 8073 5.290885 TCTTTGATCACGATGGATGTAAACG 59.709 40.000 0.00 0.00 0.00 3.60
605 8074 6.662414 TCTTTGATCACGATGGATGTAAAC 57.338 37.500 0.00 0.00 0.00 2.01
606 8075 6.483307 GGATCTTTGATCACGATGGATGTAAA 59.517 38.462 10.54 0.00 0.00 2.01
607 8076 5.991606 GGATCTTTGATCACGATGGATGTAA 59.008 40.000 10.54 0.00 0.00 2.41
664 8133 9.863650 AAGCTACTAGTCAAACTATGGTATCTA 57.136 33.333 0.00 0.00 29.08 1.98
869 8344 4.499357 CCAACAGAGGTAGTTATACGCTCC 60.499 50.000 0.00 0.00 33.28 4.70
956 8446 0.881796 TTGTGGTGCACGTTGTTTCA 59.118 45.000 11.45 0.00 37.14 2.69
978 8468 4.773149 AGACAAGTTCCCTCGATCTAAGTT 59.227 41.667 0.00 0.00 0.00 2.66
1040 8530 6.471198 TGCTATTGTCGTACTACTTCGATTTG 59.529 38.462 0.00 0.00 38.32 2.32
1208 8704 6.191315 AGGTAACATGTGTAATATTGGCCAA 58.809 36.000 23.00 23.00 41.41 4.52
1251 8747 5.659463 AGAGAGATAGTCATGCAAGTTGTC 58.341 41.667 4.48 0.00 0.00 3.18
1274 8770 3.111853 CCTGATTCGGCAAGCACTATA 57.888 47.619 0.00 0.00 0.00 1.31
1545 9041 0.391597 TTCTCCACCTTGTGACGACC 59.608 55.000 0.00 0.00 35.23 4.79
1551 9047 0.038744 AGGCCATTCTCCACCTTGTG 59.961 55.000 5.01 0.00 0.00 3.33
2685 10191 0.682209 CTGGGAAGAACCATGCAGGG 60.682 60.000 17.55 17.55 43.89 4.45
2838 10344 0.753262 TTCCGAGGCAAGCTATCCTC 59.247 55.000 19.19 19.19 44.14 3.71
2919 10425 5.451908 AGTGCATCAACAAGACAAAATACG 58.548 37.500 0.00 0.00 0.00 3.06
2967 10473 6.730977 TGCTAATAATCTAGGTATGGCCTCTT 59.269 38.462 3.32 0.00 46.96 2.85
3078 10586 1.281867 TGGGCTCAATGAGGACGAATT 59.718 47.619 12.66 0.00 0.00 2.17
3122 10630 7.385205 GTGTCTCTCACTGCTAATGTCTAAAAA 59.615 37.037 0.00 0.00 43.13 1.94
3138 10646 2.159240 TCTGTGTGTGTGTGTCTCTCAC 60.159 50.000 1.15 1.15 46.31 3.51
3169 10687 5.593909 TCTTGCCATACATTAGATGGGTTTG 59.406 40.000 3.95 0.00 43.60 2.93
3170 10688 5.765510 TCTTGCCATACATTAGATGGGTTT 58.234 37.500 3.95 0.00 43.60 3.27
3173 10728 5.132502 TGTTCTTGCCATACATTAGATGGG 58.867 41.667 3.95 0.00 43.60 4.00
3322 10878 9.994432 GAAAGAAATGTATATCCTTTGTGACTG 57.006 33.333 0.00 0.00 0.00 3.51
3440 10996 2.490115 GCTATCTCGGCACTATAGCACT 59.510 50.000 13.87 0.00 44.80 4.40
3627 11197 3.006323 AGGATCTATGACCGTGATGCTTC 59.994 47.826 0.00 0.00 35.83 3.86
3731 11307 7.063308 TCCAAAGCAAAATAATCGAATTCTTGC 59.937 33.333 14.95 14.95 0.00 4.01
3764 11340 8.632679 TGAGCATAGAAAACATGAAAAAGAACT 58.367 29.630 0.00 0.00 0.00 3.01
3776 11352 1.948611 GCCGGGTGAGCATAGAAAACA 60.949 52.381 2.18 0.00 0.00 2.83
3809 11385 2.649531 TAGGTTTATTCCCGCCCATG 57.350 50.000 0.00 0.00 0.00 3.66
4103 20926 2.892374 ACTTTTTGACACAAGGCAAGC 58.108 42.857 0.00 0.00 0.00 4.01
4104 20927 6.099341 ACTTAACTTTTTGACACAAGGCAAG 58.901 36.000 0.00 4.29 0.00 4.01
4404 21231 1.202440 GCCCACGGTTCGTCATATGTA 60.202 52.381 1.90 0.00 38.32 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.