Multiple sequence alignment - TraesCS5A01G361400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G361400 chr5A 100.000 3776 0 0 1 3776 562855383 562859158 0.000000e+00 6974.0
1 TraesCS5A01G361400 chr5A 100.000 28 0 0 2923 2950 585409701 585409728 7.000000e-03 52.8
2 TraesCS5A01G361400 chr5D 94.802 2270 67 20 690 2923 445306531 445308785 0.000000e+00 3491.0
3 TraesCS5A01G361400 chr5D 95.539 269 9 3 3509 3776 445309180 445309446 9.690000e-116 427.0
4 TraesCS5A01G361400 chr5D 90.952 210 13 3 2982 3185 445308787 445308996 1.030000e-70 278.0
5 TraesCS5A01G361400 chr5B 94.633 2124 79 17 677 2783 542934634 542936739 0.000000e+00 3258.0
6 TraesCS5A01G361400 chr5B 94.148 769 25 6 2168 2919 542940539 542941304 0.000000e+00 1153.0
7 TraesCS5A01G361400 chr5B 84.277 318 47 1 1367 1684 690593403 690593717 1.320000e-79 307.0
8 TraesCS5A01G361400 chr7B 98.978 685 6 1 1 684 742144302 742143618 0.000000e+00 1225.0
9 TraesCS5A01G361400 chr7B 96.825 693 6 5 1 677 720140656 720139964 0.000000e+00 1144.0
10 TraesCS5A01G361400 chr7B 81.319 273 50 1 1369 1641 641601047 641601318 1.770000e-53 220.0
11 TraesCS5A01G361400 chr6B 97.139 699 4 1 1 683 508615431 508616129 0.000000e+00 1166.0
12 TraesCS5A01G361400 chr6B 93.681 364 21 2 1 363 55671823 55672185 9.220000e-151 544.0
13 TraesCS5A01G361400 chr4B 97.258 693 3 1 1 677 560025269 560025961 0.000000e+00 1160.0
14 TraesCS5A01G361400 chr4D 91.938 645 33 8 61 687 3914328 3913685 0.000000e+00 885.0
15 TraesCS5A01G361400 chr4D 89.851 335 26 5 3184 3511 405710431 405710098 1.250000e-114 424.0
16 TraesCS5A01G361400 chr4D 88.955 335 28 6 3185 3511 470236256 470236589 4.540000e-109 405.0
17 TraesCS5A01G361400 chr4D 88.304 342 22 10 362 687 504556121 504555782 9.830000e-106 394.0
18 TraesCS5A01G361400 chr2D 94.505 364 18 2 1 363 620007994 620007632 9.160000e-156 560.0
19 TraesCS5A01G361400 chr2D 89.157 332 29 4 3187 3511 591303150 591302819 1.260000e-109 407.0
20 TraesCS5A01G361400 chr2D 88.690 336 31 6 3183 3511 445184800 445184465 1.630000e-108 403.0
21 TraesCS5A01G361400 chr7D 93.956 364 18 4 2 363 362363331 362362970 7.130000e-152 547.0
22 TraesCS5A01G361400 chr7D 89.189 333 28 5 3186 3511 19571759 19572090 3.510000e-110 409.0
23 TraesCS5A01G361400 chr1A 93.539 356 20 3 1 355 567626636 567626989 9.290000e-146 527.0
24 TraesCS5A01G361400 chr1A 93.617 141 6 3 381 521 567626984 567627121 1.370000e-49 207.0
25 TraesCS5A01G361400 chr1A 88.000 100 12 0 582 681 567627908 567628007 6.630000e-23 119.0
26 TraesCS5A01G361400 chr3D 89.820 334 26 4 3183 3509 275632136 275632468 4.510000e-114 422.0
27 TraesCS5A01G361400 chr3D 88.657 335 30 5 3184 3511 433306572 433306239 5.870000e-108 401.0
28 TraesCS5A01G361400 chr3D 88.589 333 31 4 3186 3511 378927723 378927391 7.600000e-107 398.0
29 TraesCS5A01G361400 chr2A 87.896 347 33 5 3180 3517 238370733 238371079 2.110000e-107 399.0
30 TraesCS5A01G361400 chr1D 88.822 331 22 6 362 677 304628883 304628553 3.540000e-105 392.0
31 TraesCS5A01G361400 chr6A 83.962 318 51 0 1367 1684 41608721 41609038 4.740000e-79 305.0
32 TraesCS5A01G361400 chr6A 82.595 316 53 2 1367 1681 41610628 41610942 1.030000e-70 278.0
33 TraesCS5A01G361400 chr6A 82.540 315 51 3 1372 1684 41612564 41612876 1.340000e-69 274.0
34 TraesCS5A01G361400 chr2B 81.818 275 46 3 1369 1641 198660675 198660947 1.060000e-55 228.0
35 TraesCS5A01G361400 chr7A 96.970 33 1 0 2959 2991 63578495 63578463 5.270000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G361400 chr5A 562855383 562859158 3775 False 6974.000000 6974 100.000000 1 3776 1 chr5A.!!$F1 3775
1 TraesCS5A01G361400 chr5D 445306531 445309446 2915 False 1398.666667 3491 93.764333 690 3776 3 chr5D.!!$F1 3086
2 TraesCS5A01G361400 chr5B 542934634 542941304 6670 False 2205.500000 3258 94.390500 677 2919 2 chr5B.!!$F2 2242
3 TraesCS5A01G361400 chr7B 742143618 742144302 684 True 1225.000000 1225 98.978000 1 684 1 chr7B.!!$R2 683
4 TraesCS5A01G361400 chr7B 720139964 720140656 692 True 1144.000000 1144 96.825000 1 677 1 chr7B.!!$R1 676
5 TraesCS5A01G361400 chr6B 508615431 508616129 698 False 1166.000000 1166 97.139000 1 683 1 chr6B.!!$F2 682
6 TraesCS5A01G361400 chr4B 560025269 560025961 692 False 1160.000000 1160 97.258000 1 677 1 chr4B.!!$F1 676
7 TraesCS5A01G361400 chr4D 3913685 3914328 643 True 885.000000 885 91.938000 61 687 1 chr4D.!!$R1 626
8 TraesCS5A01G361400 chr1A 567626636 567628007 1371 False 284.333333 527 91.718667 1 681 3 chr1A.!!$F1 680
9 TraesCS5A01G361400 chr6A 41608721 41612876 4155 False 285.666667 305 83.032333 1367 1684 3 chr6A.!!$F1 317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1718 0.307146 CCTACCTAGCTACGACGTGC 59.693 60.0 11.56 12.15 0.00 5.34 F
960 1729 0.861866 ACGACGTGCAAGATCGATCG 60.862 55.0 22.95 9.36 39.16 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 4899 1.267932 CGCTCGTAGTAGTGCAGGTAC 60.268 57.143 0.0 0.0 0.00 3.34 R
2929 10128 2.017049 CGCTTATTTTGGGACAGAGGG 58.983 52.381 0.0 0.0 42.39 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 246 2.048877 CAAGACGTAACCGCCGGT 60.049 61.111 1.02 1.02 37.65 5.28
692 1452 9.594478 AAACGTTTCCCATAAATAAATCCATTC 57.406 29.630 7.96 0.00 0.00 2.67
753 1519 1.871676 GACACGTGTCTTTTTCCCCTC 59.128 52.381 35.51 10.35 41.65 4.30
786 1555 2.602878 GCACGTTTGCTACTAGCTACA 58.397 47.619 9.49 0.00 46.17 2.74
812 1581 2.035193 TCCGACTATGATCTGCTCTTGC 59.965 50.000 0.00 0.00 40.20 4.01
814 1583 3.492309 CCGACTATGATCTGCTCTTGCTT 60.492 47.826 0.00 0.00 40.48 3.91
815 1584 3.490155 CGACTATGATCTGCTCTTGCTTG 59.510 47.826 0.00 0.00 40.48 4.01
816 1585 4.691175 GACTATGATCTGCTCTTGCTTGA 58.309 43.478 0.00 0.00 40.48 3.02
817 1586 5.293319 ACTATGATCTGCTCTTGCTTGAT 57.707 39.130 0.00 0.00 40.48 2.57
818 1587 6.416631 ACTATGATCTGCTCTTGCTTGATA 57.583 37.500 0.00 0.00 40.48 2.15
819 1588 6.824553 ACTATGATCTGCTCTTGCTTGATAA 58.175 36.000 0.00 0.00 40.48 1.75
820 1589 6.705381 ACTATGATCTGCTCTTGCTTGATAAC 59.295 38.462 0.00 0.00 40.48 1.89
824 1593 4.388485 TCTGCTCTTGCTTGATAACACAA 58.612 39.130 0.00 0.00 40.48 3.33
899 1668 1.462670 GCATCTATAAGAGCTTGGCGC 59.537 52.381 0.00 0.00 39.57 6.53
924 1693 1.834188 CCAAACCCTCATACCACCAC 58.166 55.000 0.00 0.00 0.00 4.16
944 1713 2.774234 ACCAGTACCTACCTAGCTACGA 59.226 50.000 0.00 0.00 0.00 3.43
945 1714 3.137533 CCAGTACCTACCTAGCTACGAC 58.862 54.545 0.00 0.00 0.00 4.34
946 1715 2.799412 CAGTACCTACCTAGCTACGACG 59.201 54.545 0.00 0.00 0.00 5.12
947 1716 2.432510 AGTACCTACCTAGCTACGACGT 59.567 50.000 5.52 5.52 0.00 4.34
948 1717 1.661341 ACCTACCTAGCTACGACGTG 58.339 55.000 11.56 1.81 0.00 4.49
949 1718 0.307146 CCTACCTAGCTACGACGTGC 59.693 60.000 11.56 12.15 0.00 5.34
960 1729 0.861866 ACGACGTGCAAGATCGATCG 60.862 55.000 22.95 9.36 39.16 3.69
961 1730 1.532343 CGACGTGCAAGATCGATCGG 61.532 60.000 19.33 16.19 38.10 4.18
975 1744 2.351336 GATCGGTCGATCGCCAGGTT 62.351 60.000 14.58 8.53 41.09 3.50
976 1745 1.105167 ATCGGTCGATCGCCAGGTTA 61.105 55.000 14.58 0.00 0.00 2.85
977 1746 1.299165 CGGTCGATCGCCAGGTTAG 60.299 63.158 22.50 6.86 0.00 2.34
978 1747 1.591863 GGTCGATCGCCAGGTTAGC 60.592 63.158 19.44 4.28 0.00 3.09
1238 2022 1.306141 AGGTGGATGAGGAAGGCGA 60.306 57.895 0.00 0.00 0.00 5.54
1239 2023 0.909610 AGGTGGATGAGGAAGGCGAA 60.910 55.000 0.00 0.00 0.00 4.70
1741 4432 2.345760 TACGGCGAGTTCCTGGTCC 61.346 63.158 16.62 0.00 0.00 4.46
1743 4434 3.692406 GGCGAGTTCCTGGTCCGT 61.692 66.667 0.00 0.00 0.00 4.69
2137 4828 2.717390 ACAACTGCAACACCTACAACA 58.283 42.857 0.00 0.00 0.00 3.33
2640 5331 0.670546 ACCACTTCGAGAACATGGCG 60.671 55.000 0.00 0.00 33.46 5.69
2796 9991 7.718525 TGTAAATCAATCAATACATGCAGCAT 58.281 30.769 0.52 0.52 0.00 3.79
2829 10026 3.858247 AGTAGTAATTGGCTCAACCGAC 58.142 45.455 0.00 0.00 43.94 4.79
2844 10041 1.692519 ACCGACCATATTGGCTAGGAC 59.307 52.381 8.80 0.00 42.67 3.85
2845 10042 1.336887 CCGACCATATTGGCTAGGACG 60.337 57.143 0.00 0.00 42.67 4.79
2846 10043 1.611977 CGACCATATTGGCTAGGACGA 59.388 52.381 0.00 0.00 42.67 4.20
2919 10118 7.002816 TCAAACTGCAATTGTCAACATTTTC 57.997 32.000 7.40 0.00 0.00 2.29
2923 10122 8.715191 AACTGCAATTGTCAACATTTTCTTAA 57.285 26.923 7.40 0.00 0.00 1.85
2925 10124 9.328845 ACTGCAATTGTCAACATTTTCTTAAAT 57.671 25.926 7.40 0.00 34.29 1.40
2939 10138 8.633561 CATTTTCTTAAATATTCCCTCTGTCCC 58.366 37.037 0.00 0.00 32.75 4.46
2943 10142 7.704727 TCTTAAATATTCCCTCTGTCCCAAAA 58.295 34.615 0.00 0.00 0.00 2.44
2944 10143 8.343787 TCTTAAATATTCCCTCTGTCCCAAAAT 58.656 33.333 0.00 0.00 0.00 1.82
2946 10145 9.998752 TTAAATATTCCCTCTGTCCCAAAATAA 57.001 29.630 0.00 0.00 0.00 1.40
2947 10146 8.539117 AAATATTCCCTCTGTCCCAAAATAAG 57.461 34.615 0.00 0.00 0.00 1.73
2948 10147 3.366052 TCCCTCTGTCCCAAAATAAGC 57.634 47.619 0.00 0.00 0.00 3.09
2949 10148 2.017049 CCCTCTGTCCCAAAATAAGCG 58.983 52.381 0.00 0.00 0.00 4.68
2950 10149 2.355716 CCCTCTGTCCCAAAATAAGCGA 60.356 50.000 0.00 0.00 0.00 4.93
2951 10150 2.939103 CCTCTGTCCCAAAATAAGCGAG 59.061 50.000 0.00 0.00 0.00 5.03
2952 10151 3.600388 CTCTGTCCCAAAATAAGCGAGT 58.400 45.455 0.00 0.00 0.00 4.18
2954 10153 4.501071 TCTGTCCCAAAATAAGCGAGTAC 58.499 43.478 0.00 0.00 0.00 2.73
2956 10155 4.250464 TGTCCCAAAATAAGCGAGTACAG 58.750 43.478 0.00 0.00 0.00 2.74
2958 10157 4.329256 GTCCCAAAATAAGCGAGTACAGTC 59.671 45.833 0.00 0.00 0.00 3.51
2959 10158 4.020928 TCCCAAAATAAGCGAGTACAGTCA 60.021 41.667 0.00 0.00 0.00 3.41
2960 10159 4.092968 CCCAAAATAAGCGAGTACAGTCAC 59.907 45.833 0.00 0.00 0.00 3.67
2961 10160 4.929808 CCAAAATAAGCGAGTACAGTCACT 59.070 41.667 0.00 0.00 0.00 3.41
2962 10161 5.408604 CCAAAATAAGCGAGTACAGTCACTT 59.591 40.000 0.00 0.00 0.00 3.16
2963 10162 6.588756 CCAAAATAAGCGAGTACAGTCACTTA 59.411 38.462 0.00 0.00 0.00 2.24
2964 10163 7.277981 CCAAAATAAGCGAGTACAGTCACTTAT 59.722 37.037 0.00 0.00 33.04 1.73
2966 10165 8.773404 AAATAAGCGAGTACAGTCACTTATTT 57.227 30.769 18.48 18.48 41.72 1.40
2967 10166 8.773404 AATAAGCGAGTACAGTCACTTATTTT 57.227 30.769 11.63 0.00 37.13 1.82
2968 10167 6.467723 AAGCGAGTACAGTCACTTATTTTG 57.532 37.500 0.00 0.00 0.00 2.44
2969 10168 4.929808 AGCGAGTACAGTCACTTATTTTGG 59.070 41.667 0.00 0.00 0.00 3.28
2970 10169 4.092968 GCGAGTACAGTCACTTATTTTGGG 59.907 45.833 0.00 0.00 0.00 4.12
2971 10170 5.475719 CGAGTACAGTCACTTATTTTGGGA 58.524 41.667 0.00 0.00 0.00 4.37
2972 10171 5.347907 CGAGTACAGTCACTTATTTTGGGAC 59.652 44.000 0.00 0.00 0.00 4.46
2973 10172 5.235516 AGTACAGTCACTTATTTTGGGACG 58.764 41.667 0.00 0.00 33.84 4.79
2974 10173 3.408634 ACAGTCACTTATTTTGGGACGG 58.591 45.455 0.00 0.00 33.84 4.79
2975 10174 3.071892 ACAGTCACTTATTTTGGGACGGA 59.928 43.478 3.58 0.00 33.84 4.69
2976 10175 4.069304 CAGTCACTTATTTTGGGACGGAA 58.931 43.478 0.00 0.00 33.84 4.30
2977 10176 4.517453 CAGTCACTTATTTTGGGACGGAAA 59.483 41.667 0.00 0.00 33.84 3.13
2978 10177 5.009210 CAGTCACTTATTTTGGGACGGAAAA 59.991 40.000 0.00 0.00 33.84 2.29
2979 10178 5.595133 AGTCACTTATTTTGGGACGGAAAAA 59.405 36.000 0.00 0.00 33.84 1.94
2980 10179 5.918576 GTCACTTATTTTGGGACGGAAAAAG 59.081 40.000 0.00 0.00 0.00 2.27
3022 10221 6.476378 AGGTGTGCTTTCTTGTATAGTGAAT 58.524 36.000 0.00 0.00 0.00 2.57
3075 10274 1.611519 CCAAAGGGTAAGCGTGGAAA 58.388 50.000 0.00 0.00 0.00 3.13
3166 10370 7.278203 TCGTATAGTTTTGTCTCAAACACACAA 59.722 33.333 0.00 0.00 37.70 3.33
3194 10399 7.447374 TCATCATTTATGAAACGGAAACACT 57.553 32.000 0.00 0.00 41.75 3.55
3195 10400 8.554835 TCATCATTTATGAAACGGAAACACTA 57.445 30.769 0.00 0.00 41.75 2.74
3197 10402 9.787532 CATCATTTATGAAACGGAAACACTAAT 57.212 29.630 0.00 0.00 40.69 1.73
3198 10403 9.787532 ATCATTTATGAAACGGAAACACTAATG 57.212 29.630 0.00 0.00 40.69 1.90
3199 10404 7.753132 TCATTTATGAAACGGAAACACTAATGC 59.247 33.333 0.00 0.00 33.08 3.56
3200 10405 3.907894 TGAAACGGAAACACTAATGCC 57.092 42.857 0.00 0.00 0.00 4.40
3202 10407 4.643463 TGAAACGGAAACACTAATGCCTA 58.357 39.130 0.00 0.00 0.00 3.93
3203 10408 4.453136 TGAAACGGAAACACTAATGCCTAC 59.547 41.667 0.00 0.00 0.00 3.18
3204 10409 3.688694 ACGGAAACACTAATGCCTACA 57.311 42.857 0.00 0.00 0.00 2.74
3206 10411 3.938963 ACGGAAACACTAATGCCTACATG 59.061 43.478 0.00 0.00 36.36 3.21
3207 10412 3.938963 CGGAAACACTAATGCCTACATGT 59.061 43.478 2.69 2.69 36.36 3.21
3209 10414 5.758296 CGGAAACACTAATGCCTACATGTAT 59.242 40.000 5.91 0.00 36.36 2.29
3210 10415 6.292865 CGGAAACACTAATGCCTACATGTATG 60.293 42.308 5.91 4.82 36.36 2.39
3212 10417 4.973168 ACACTAATGCCTACATGTATGGG 58.027 43.478 17.67 12.95 36.36 4.00
3213 10418 3.753272 CACTAATGCCTACATGTATGGGC 59.247 47.826 23.02 23.02 44.31 5.36
3214 10419 1.896220 AATGCCTACATGTATGGGCG 58.104 50.000 23.71 6.82 46.72 6.13
3215 10420 0.764890 ATGCCTACATGTATGGGCGT 59.235 50.000 23.71 21.91 46.72 5.68
3216 10421 0.544223 TGCCTACATGTATGGGCGTT 59.456 50.000 23.71 0.00 46.72 4.84
3217 10422 1.065053 TGCCTACATGTATGGGCGTTT 60.065 47.619 23.71 0.00 46.72 3.60
3219 10424 1.333619 CCTACATGTATGGGCGTTTGC 59.666 52.381 5.91 0.00 41.71 3.68
3222 10427 1.405105 ACATGTATGGGCGTTTGCATC 59.595 47.619 0.00 0.00 45.35 3.91
3224 10429 1.378531 TGTATGGGCGTTTGCATCTC 58.621 50.000 0.00 0.00 45.35 2.75
3225 10430 0.304705 GTATGGGCGTTTGCATCTCG 59.695 55.000 0.00 0.00 45.35 4.04
3228 10433 1.134694 GGGCGTTTGCATCTCGTTC 59.865 57.895 0.00 0.00 45.35 3.95
3229 10434 1.573829 GGGCGTTTGCATCTCGTTCA 61.574 55.000 0.00 0.00 45.35 3.18
3230 10435 0.452784 GGCGTTTGCATCTCGTTCAC 60.453 55.000 0.00 0.00 45.35 3.18
3231 10436 0.234625 GCGTTTGCATCTCGTTCACA 59.765 50.000 0.00 0.00 42.15 3.58
3232 10437 1.937359 CGTTTGCATCTCGTTCACAC 58.063 50.000 0.00 0.00 0.00 3.82
3234 10439 0.234625 TTTGCATCTCGTTCACACGC 59.765 50.000 0.00 0.00 46.70 5.34
3235 10440 1.885814 TTGCATCTCGTTCACACGCG 61.886 55.000 3.53 3.53 46.70 6.01
3236 10441 2.372690 GCATCTCGTTCACACGCGT 61.373 57.895 5.58 5.58 46.70 6.01
3237 10442 1.412226 CATCTCGTTCACACGCGTG 59.588 57.895 35.99 35.99 46.70 5.34
3238 10443 1.733041 ATCTCGTTCACACGCGTGG 60.733 57.895 39.21 28.05 46.70 4.94
3240 10445 1.733041 CTCGTTCACACGCGTGGAT 60.733 57.895 39.21 20.14 46.70 3.41
3241 10446 1.674611 CTCGTTCACACGCGTGGATC 61.675 60.000 39.21 27.84 46.70 3.36
3242 10447 2.726691 CGTTCACACGCGTGGATCC 61.727 63.158 39.21 23.70 43.79 3.36
3243 10448 1.666553 GTTCACACGCGTGGATCCA 60.667 57.895 39.21 11.44 43.79 3.41
3252 10457 4.687464 GTGGATCCACGTCCGTTT 57.313 55.556 28.52 0.00 41.35 3.60
3253 10458 3.818586 GTGGATCCACGTCCGTTTA 57.181 52.632 28.52 0.00 41.35 2.01
3254 10459 2.304751 GTGGATCCACGTCCGTTTAT 57.695 50.000 28.52 0.00 41.35 1.40
3255 10460 1.931172 GTGGATCCACGTCCGTTTATG 59.069 52.381 28.52 0.00 41.35 1.90
3256 10461 1.134640 TGGATCCACGTCCGTTTATGG 60.135 52.381 11.44 0.00 41.35 2.74
3258 10463 2.624636 GATCCACGTCCGTTTATGGTT 58.375 47.619 0.00 0.00 33.67 3.67
3259 10464 1.798283 TCCACGTCCGTTTATGGTTG 58.202 50.000 0.00 0.00 33.67 3.77
3260 10465 0.167251 CCACGTCCGTTTATGGTTGC 59.833 55.000 0.00 0.00 0.00 4.17
3262 10467 0.869730 ACGTCCGTTTATGGTTGCAC 59.130 50.000 0.00 0.00 0.00 4.57
3265 10470 1.532007 GTCCGTTTATGGTTGCACGAA 59.468 47.619 0.00 0.00 34.49 3.85
3266 10471 2.160813 GTCCGTTTATGGTTGCACGAAT 59.839 45.455 0.00 0.00 34.49 3.34
3267 10472 2.417239 TCCGTTTATGGTTGCACGAATC 59.583 45.455 0.00 0.00 34.49 2.52
3268 10473 2.418628 CCGTTTATGGTTGCACGAATCT 59.581 45.455 0.00 0.00 34.49 2.40
3269 10474 3.119990 CCGTTTATGGTTGCACGAATCTT 60.120 43.478 0.00 0.00 34.49 2.40
3270 10475 3.845775 CGTTTATGGTTGCACGAATCTTG 59.154 43.478 0.00 0.00 34.49 3.02
3272 10477 0.527565 ATGGTTGCACGAATCTTGGC 59.472 50.000 0.00 0.00 0.00 4.52
3273 10478 0.821301 TGGTTGCACGAATCTTGGCA 60.821 50.000 0.00 0.00 0.00 4.92
3274 10479 0.527565 GGTTGCACGAATCTTGGCAT 59.472 50.000 0.00 0.00 35.98 4.40
3275 10480 1.621107 GTTGCACGAATCTTGGCATG 58.379 50.000 0.00 0.00 35.98 4.06
3282 10487 2.030007 ACGAATCTTGGCATGTTTGTGG 60.030 45.455 1.85 0.00 0.00 4.17
3283 10488 2.030007 CGAATCTTGGCATGTTTGTGGT 60.030 45.455 1.85 0.00 0.00 4.16
3284 10489 3.319755 GAATCTTGGCATGTTTGTGGTG 58.680 45.455 1.85 0.00 0.00 4.17
3288 10493 4.341827 GCATGTTTGTGGTGCCAC 57.658 55.556 14.04 14.04 46.33 5.01
3296 10501 3.057337 GTGGTGCCACGTAGGACT 58.943 61.111 5.55 0.00 41.22 3.85
3297 10502 1.374252 GTGGTGCCACGTAGGACTG 60.374 63.158 5.55 0.00 41.22 3.51
3298 10503 2.264794 GGTGCCACGTAGGACTGG 59.735 66.667 5.55 0.00 41.22 4.00
3299 10504 2.264794 GTGCCACGTAGGACTGGG 59.735 66.667 8.04 0.00 41.22 4.45
3300 10505 2.203728 TGCCACGTAGGACTGGGT 60.204 61.111 8.04 0.00 41.22 4.51
3301 10506 1.839747 TGCCACGTAGGACTGGGTT 60.840 57.895 8.04 0.00 41.22 4.11
3302 10507 1.375523 GCCACGTAGGACTGGGTTG 60.376 63.158 8.04 0.00 41.22 3.77
3303 10508 1.295423 CCACGTAGGACTGGGTTGG 59.705 63.158 0.00 0.00 41.22 3.77
3304 10509 1.477685 CCACGTAGGACTGGGTTGGT 61.478 60.000 0.00 0.00 41.22 3.67
3305 10510 0.320421 CACGTAGGACTGGGTTGGTG 60.320 60.000 0.00 0.00 0.00 4.17
3307 10512 0.320421 CGTAGGACTGGGTTGGTGTG 60.320 60.000 0.00 0.00 0.00 3.82
3310 10515 1.528309 GGACTGGGTTGGTGTGTGG 60.528 63.158 0.00 0.00 0.00 4.17
3311 10516 1.528309 GACTGGGTTGGTGTGTGGG 60.528 63.158 0.00 0.00 0.00 4.61
3312 10517 2.912025 CTGGGTTGGTGTGTGGGC 60.912 66.667 0.00 0.00 0.00 5.36
3313 10518 3.730028 CTGGGTTGGTGTGTGGGCA 62.730 63.158 0.00 0.00 0.00 5.36
3314 10519 2.203625 GGGTTGGTGTGTGGGCAT 60.204 61.111 0.00 0.00 0.00 4.40
3315 10520 1.836604 GGGTTGGTGTGTGGGCATT 60.837 57.895 0.00 0.00 0.00 3.56
3319 10524 1.067635 GTTGGTGTGTGGGCATTCATC 60.068 52.381 0.00 0.00 0.00 2.92
3320 10525 0.611618 TGGTGTGTGGGCATTCATCC 60.612 55.000 0.00 0.00 0.00 3.51
3321 10526 1.656818 GGTGTGTGGGCATTCATCCG 61.657 60.000 0.00 0.00 0.00 4.18
3322 10527 1.378382 TGTGTGGGCATTCATCCGG 60.378 57.895 0.00 0.00 0.00 5.14
3323 10528 1.378514 GTGTGGGCATTCATCCGGT 60.379 57.895 0.00 0.00 0.00 5.28
3324 10529 1.077787 TGTGGGCATTCATCCGGTC 60.078 57.895 0.00 0.00 0.00 4.79
3325 10530 2.180204 GTGGGCATTCATCCGGTCG 61.180 63.158 0.00 0.00 0.00 4.79
3326 10531 3.279875 GGGCATTCATCCGGTCGC 61.280 66.667 0.00 0.00 0.00 5.19
3327 10532 3.279875 GGCATTCATCCGGTCGCC 61.280 66.667 0.00 1.90 0.00 5.54
3329 10534 1.069090 GCATTCATCCGGTCGCCTA 59.931 57.895 0.00 0.00 0.00 3.93
3331 10536 1.948104 CATTCATCCGGTCGCCTAAA 58.052 50.000 0.00 0.00 0.00 1.85
3332 10537 1.597663 CATTCATCCGGTCGCCTAAAC 59.402 52.381 0.00 0.00 0.00 2.01
3333 10538 0.458889 TTCATCCGGTCGCCTAAACG 60.459 55.000 0.00 0.00 0.00 3.60
3336 10541 0.459063 ATCCGGTCGCCTAAACGTTC 60.459 55.000 0.00 0.00 0.00 3.95
3337 10542 2.438954 CCGGTCGCCTAAACGTTCG 61.439 63.158 0.00 0.16 0.00 3.95
3342 10547 2.553752 GTCGCCTAAACGTTCGTTTTC 58.446 47.619 24.22 14.49 38.91 2.29
3343 10548 2.033832 GTCGCCTAAACGTTCGTTTTCA 60.034 45.455 24.22 10.03 38.91 2.69
3344 10549 2.033832 TCGCCTAAACGTTCGTTTTCAC 60.034 45.455 24.22 14.35 38.91 3.18
3347 10552 3.610495 CCTAAACGTTCGTTTTCACCAC 58.390 45.455 24.22 0.00 38.91 4.16
3348 10553 3.063725 CCTAAACGTTCGTTTTCACCACA 59.936 43.478 24.22 7.58 38.91 4.17
3349 10554 2.530832 AACGTTCGTTTTCACCACAC 57.469 45.000 4.72 0.00 0.00 3.82
3350 10555 0.370958 ACGTTCGTTTTCACCACACG 59.629 50.000 0.00 0.00 35.18 4.49
3352 10557 1.008329 GTTCGTTTTCACCACACGGA 58.992 50.000 0.00 0.00 34.61 4.69
3353 10558 1.397692 GTTCGTTTTCACCACACGGAA 59.602 47.619 0.00 0.00 34.61 4.30
3354 10559 1.292061 TCGTTTTCACCACACGGAAG 58.708 50.000 0.00 0.00 34.61 3.46
3355 10560 0.306533 CGTTTTCACCACACGGAAGG 59.693 55.000 0.00 0.00 35.59 3.46
3357 10562 1.332686 GTTTTCACCACACGGAAGGAC 59.667 52.381 0.00 0.00 35.59 3.85
3359 10564 0.105964 TTCACCACACGGAAGGACTG 59.894 55.000 0.00 0.00 35.59 3.51
3360 10565 1.301716 CACCACACGGAAGGACTGG 60.302 63.158 0.00 0.00 35.59 4.00
3361 10566 1.764854 ACCACACGGAAGGACTGGT 60.765 57.895 0.00 0.00 35.59 4.00
3364 10569 0.880278 CACACGGAAGGACTGGTGTG 60.880 60.000 8.52 8.52 36.66 3.82
3365 10570 1.335132 ACACGGAAGGACTGGTGTGT 61.335 55.000 0.00 0.00 35.86 3.72
3366 10571 0.880278 CACGGAAGGACTGGTGTGTG 60.880 60.000 0.00 0.00 0.00 3.82
3368 10573 1.073199 GGAAGGACTGGTGTGTGGG 59.927 63.158 0.00 0.00 0.00 4.61
3370 10575 0.535102 GAAGGACTGGTGTGTGGGTG 60.535 60.000 0.00 0.00 0.00 4.61
3372 10577 1.226262 GGACTGGTGTGTGGGTGTT 59.774 57.895 0.00 0.00 0.00 3.32
3373 10578 0.395173 GGACTGGTGTGTGGGTGTTT 60.395 55.000 0.00 0.00 0.00 2.83
3374 10579 1.134037 GGACTGGTGTGTGGGTGTTTA 60.134 52.381 0.00 0.00 0.00 2.01
3375 10580 2.218603 GACTGGTGTGTGGGTGTTTAG 58.781 52.381 0.00 0.00 0.00 1.85
3376 10581 0.951558 CTGGTGTGTGGGTGTTTAGC 59.048 55.000 0.00 0.00 0.00 3.09
3378 10583 0.951558 GGTGTGTGGGTGTTTAGCAG 59.048 55.000 0.00 0.00 0.00 4.24
3379 10584 1.675552 GTGTGTGGGTGTTTAGCAGT 58.324 50.000 0.00 0.00 0.00 4.40
3381 10586 2.032924 GTGTGTGGGTGTTTAGCAGTTC 59.967 50.000 0.00 0.00 0.00 3.01
3382 10587 1.263217 GTGTGGGTGTTTAGCAGTTCG 59.737 52.381 0.00 0.00 0.00 3.95
3383 10588 0.237498 GTGGGTGTTTAGCAGTTCGC 59.763 55.000 0.00 0.00 42.91 4.70
3384 10589 0.887387 TGGGTGTTTAGCAGTTCGCC 60.887 55.000 0.00 0.00 44.04 5.54
3385 10590 1.583495 GGGTGTTTAGCAGTTCGCCC 61.583 60.000 5.20 5.20 44.04 6.13
3386 10591 0.887387 GGTGTTTAGCAGTTCGCCCA 60.887 55.000 0.00 0.00 44.04 5.36
3387 10592 0.237498 GTGTTTAGCAGTTCGCCCAC 59.763 55.000 0.00 0.00 44.04 4.61
3389 10594 0.237498 GTTTAGCAGTTCGCCCACAC 59.763 55.000 0.00 0.00 44.04 3.82
3390 10595 0.179043 TTTAGCAGTTCGCCCACACA 60.179 50.000 0.00 0.00 44.04 3.72
3391 10596 0.602638 TTAGCAGTTCGCCCACACAG 60.603 55.000 0.00 0.00 44.04 3.66
3392 10597 1.754380 TAGCAGTTCGCCCACACAGT 61.754 55.000 0.00 0.00 44.04 3.55
3394 10599 1.941812 CAGTTCGCCCACACAGTTC 59.058 57.895 0.00 0.00 0.00 3.01
3396 10601 2.970324 TTCGCCCACACAGTTCGC 60.970 61.111 0.00 0.00 0.00 4.70
3400 10605 2.034066 CCCACACAGTTCGCCCAT 59.966 61.111 0.00 0.00 0.00 4.00
3401 10606 1.298340 CCCACACAGTTCGCCCATA 59.702 57.895 0.00 0.00 0.00 2.74
3402 10607 1.024579 CCCACACAGTTCGCCCATAC 61.025 60.000 0.00 0.00 0.00 2.39
3404 10609 1.078709 CACACAGTTCGCCCATACAG 58.921 55.000 0.00 0.00 0.00 2.74
3405 10610 0.036388 ACACAGTTCGCCCATACAGG 60.036 55.000 0.00 0.00 37.03 4.00
3414 10619 3.415186 CCATACAGGGGCTGGTGT 58.585 61.111 0.00 0.00 35.51 4.16
3415 10620 1.077501 CCATACAGGGGCTGGTGTG 60.078 63.158 0.00 0.00 35.51 3.82
3416 10621 1.685224 CATACAGGGGCTGGTGTGT 59.315 57.895 0.00 0.00 35.51 3.72
3417 10622 0.677731 CATACAGGGGCTGGTGTGTG 60.678 60.000 0.00 0.00 35.51 3.82
3418 10623 1.852157 ATACAGGGGCTGGTGTGTGG 61.852 60.000 0.00 0.00 35.51 4.17
3419 10624 4.666253 CAGGGGCTGGTGTGTGGG 62.666 72.222 0.00 0.00 0.00 4.61
3422 10627 4.684134 GGGCTGGTGTGTGGGCAT 62.684 66.667 0.00 0.00 0.00 4.40
3424 10629 2.209315 GGCTGGTGTGTGGGCATTT 61.209 57.895 0.00 0.00 0.00 2.32
3425 10630 0.897863 GGCTGGTGTGTGGGCATTTA 60.898 55.000 0.00 0.00 0.00 1.40
3428 11761 2.445427 CTGGTGTGTGGGCATTTATCA 58.555 47.619 0.00 0.00 0.00 2.15
3433 11766 2.746904 TGTGTGGGCATTTATCAGTTCG 59.253 45.455 0.00 0.00 0.00 3.95
3435 11768 1.065551 GTGGGCATTTATCAGTTCGCC 59.934 52.381 0.00 0.00 38.85 5.54
3440 11773 2.477863 GCATTTATCAGTTCGCCCACAC 60.478 50.000 0.00 0.00 0.00 3.82
3442 11775 1.017177 TTATCAGTTCGCCCACACGC 61.017 55.000 0.00 0.00 0.00 5.34
3460 11793 3.775654 CCGCCTCCTCTCCCACAC 61.776 72.222 0.00 0.00 0.00 3.82
3463 11796 1.610673 GCCTCCTCTCCCACACTCA 60.611 63.158 0.00 0.00 0.00 3.41
3464 11797 1.194781 GCCTCCTCTCCCACACTCAA 61.195 60.000 0.00 0.00 0.00 3.02
3465 11798 1.352083 CCTCCTCTCCCACACTCAAA 58.648 55.000 0.00 0.00 0.00 2.69
3467 11800 0.687354 TCCTCTCCCACACTCAAAGC 59.313 55.000 0.00 0.00 0.00 3.51
3468 11801 0.689623 CCTCTCCCACACTCAAAGCT 59.310 55.000 0.00 0.00 0.00 3.74
3469 11802 1.610102 CCTCTCCCACACTCAAAGCTG 60.610 57.143 0.00 0.00 0.00 4.24
3470 11803 0.250467 TCTCCCACACTCAAAGCTGC 60.250 55.000 0.00 0.00 0.00 5.25
3471 11804 1.228245 TCCCACACTCAAAGCTGCC 60.228 57.895 0.00 0.00 0.00 4.85
3472 11805 1.529010 CCCACACTCAAAGCTGCCA 60.529 57.895 0.00 0.00 0.00 4.92
3473 11806 1.521450 CCCACACTCAAAGCTGCCAG 61.521 60.000 0.00 0.00 0.00 4.85
3474 11807 0.820891 CCACACTCAAAGCTGCCAGT 60.821 55.000 0.00 0.00 0.00 4.00
3475 11808 1.027357 CACACTCAAAGCTGCCAGTT 58.973 50.000 0.00 0.00 0.00 3.16
3476 11809 1.027357 ACACTCAAAGCTGCCAGTTG 58.973 50.000 0.00 0.00 0.00 3.16
3477 11810 0.318445 CACTCAAAGCTGCCAGTTGC 60.318 55.000 0.00 0.00 41.77 4.17
3478 11811 1.288127 CTCAAAGCTGCCAGTTGCC 59.712 57.895 0.00 0.00 40.16 4.52
3479 11812 1.455402 TCAAAGCTGCCAGTTGCCA 60.455 52.632 0.00 0.00 40.16 4.92
3480 11813 0.828762 TCAAAGCTGCCAGTTGCCAT 60.829 50.000 0.00 0.00 40.16 4.40
3481 11814 0.669318 CAAAGCTGCCAGTTGCCATG 60.669 55.000 0.00 0.00 40.16 3.66
3482 11815 1.117142 AAAGCTGCCAGTTGCCATGT 61.117 50.000 0.00 0.00 40.16 3.21
3483 11816 1.812686 AAGCTGCCAGTTGCCATGTG 61.813 55.000 0.00 0.00 40.16 3.21
3484 11817 2.567497 GCTGCCAGTTGCCATGTGT 61.567 57.895 0.00 0.00 40.16 3.72
3485 11818 2.043625 CTGCCAGTTGCCATGTGTT 58.956 52.632 0.00 0.00 40.16 3.32
3486 11819 0.390124 CTGCCAGTTGCCATGTGTTT 59.610 50.000 0.00 0.00 40.16 2.83
3487 11820 0.829333 TGCCAGTTGCCATGTGTTTT 59.171 45.000 0.00 0.00 40.16 2.43
3488 11821 1.219646 GCCAGTTGCCATGTGTTTTG 58.780 50.000 0.00 0.00 0.00 2.44
3489 11822 1.219646 CCAGTTGCCATGTGTTTTGC 58.780 50.000 0.00 0.00 0.00 3.68
3490 11823 1.472904 CCAGTTGCCATGTGTTTTGCA 60.473 47.619 0.00 0.00 0.00 4.08
3491 11824 1.862201 CAGTTGCCATGTGTTTTGCAG 59.138 47.619 0.00 0.00 34.81 4.41
3492 11825 1.202557 AGTTGCCATGTGTTTTGCAGG 60.203 47.619 0.00 0.00 34.81 4.85
3493 11826 0.829333 TTGCCATGTGTTTTGCAGGT 59.171 45.000 0.00 0.00 34.81 4.00
3494 11827 0.829333 TGCCATGTGTTTTGCAGGTT 59.171 45.000 0.00 0.00 0.00 3.50
3495 11828 2.034878 TGCCATGTGTTTTGCAGGTTA 58.965 42.857 0.00 0.00 0.00 2.85
3496 11829 2.223923 TGCCATGTGTTTTGCAGGTTAC 60.224 45.455 0.00 0.00 0.00 2.50
3497 11830 2.223923 GCCATGTGTTTTGCAGGTTACA 60.224 45.455 0.00 0.00 0.00 2.41
3498 11831 3.554752 GCCATGTGTTTTGCAGGTTACAT 60.555 43.478 0.00 3.75 0.00 2.29
3499 11832 3.989167 CCATGTGTTTTGCAGGTTACATG 59.011 43.478 20.26 20.26 42.88 3.21
3500 11833 3.724508 TGTGTTTTGCAGGTTACATGG 57.275 42.857 0.00 0.00 0.00 3.66
3501 11834 2.223923 TGTGTTTTGCAGGTTACATGGC 60.224 45.455 0.00 0.00 0.00 4.40
3502 11835 2.034878 TGTTTTGCAGGTTACATGGCA 58.965 42.857 0.00 0.00 0.00 4.92
3503 11836 2.432146 TGTTTTGCAGGTTACATGGCAA 59.568 40.909 0.00 1.47 43.79 4.52
3504 11837 2.799978 GTTTTGCAGGTTACATGGCAAC 59.200 45.455 4.56 4.45 44.99 4.17
3505 11838 1.993956 TTGCAGGTTACATGGCAACT 58.006 45.000 11.00 0.00 40.94 3.16
3506 11839 1.246649 TGCAGGTTACATGGCAACTG 58.753 50.000 7.01 7.01 32.54 3.16
3507 11840 0.109132 GCAGGTTACATGGCAACTGC 60.109 55.000 17.71 17.71 41.14 4.40
3561 11894 2.665519 GCAAGTCGATGTTTCAACGCAT 60.666 45.455 0.00 0.00 30.00 4.73
3591 11924 2.306512 AGCCATTTGATGCACCCATTTT 59.693 40.909 0.00 0.00 0.00 1.82
3609 11942 4.410743 GCAGAAGCCTTGCGGTGC 62.411 66.667 0.00 0.00 33.58 5.01
3627 11960 1.176527 GCCAGCTTCATTTGGTGCTA 58.823 50.000 0.00 0.00 36.81 3.49
3674 12007 7.252965 TCAATGACAACACTTCACGAATTTA 57.747 32.000 0.00 0.00 0.00 1.40
3718 12051 5.238214 GTGATCTCTACAATTCCAATCCAGC 59.762 44.000 0.00 0.00 0.00 4.85
3737 12070 1.530293 GCCAGCAATAGAATCAGCTCG 59.470 52.381 0.00 0.00 34.61 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 246 2.687200 CCTCCACCGGGTGATGGA 60.687 66.667 28.36 16.01 42.88 3.41
653 1413 3.290748 GAAACGTTTAAAATCGGCGTGT 58.709 40.909 14.65 0.00 35.88 4.49
784 1553 4.830046 AGCAGATCATAGTCGGATACTTGT 59.170 41.667 0.00 0.00 39.80 3.16
786 1555 5.321102 AGAGCAGATCATAGTCGGATACTT 58.679 41.667 0.00 0.00 39.80 2.24
812 1581 6.869913 ACTGCCAATCAATTTGTGTTATCAAG 59.130 34.615 0.00 0.00 33.15 3.02
814 1583 6.157904 CACTGCCAATCAATTTGTGTTATCA 58.842 36.000 0.00 0.00 33.15 2.15
815 1584 5.062558 GCACTGCCAATCAATTTGTGTTATC 59.937 40.000 0.00 0.00 33.15 1.75
816 1585 4.931002 GCACTGCCAATCAATTTGTGTTAT 59.069 37.500 0.00 0.00 33.15 1.89
817 1586 4.202192 TGCACTGCCAATCAATTTGTGTTA 60.202 37.500 0.00 0.00 33.15 2.41
818 1587 3.132925 GCACTGCCAATCAATTTGTGTT 58.867 40.909 0.00 0.00 33.15 3.32
819 1588 2.102757 TGCACTGCCAATCAATTTGTGT 59.897 40.909 0.00 0.00 33.15 3.72
820 1589 2.756829 TGCACTGCCAATCAATTTGTG 58.243 42.857 0.00 0.00 33.15 3.33
824 1593 3.140623 GGTTTTGCACTGCCAATCAATT 58.859 40.909 0.00 0.00 0.00 2.32
876 1645 2.483491 GCCAAGCTCTTATAGATGCTGC 59.517 50.000 0.00 0.00 32.04 5.25
944 1713 0.525668 GACCGATCGATCTTGCACGT 60.526 55.000 22.43 1.63 0.00 4.49
945 1714 2.208074 GACCGATCGATCTTGCACG 58.792 57.895 22.43 9.21 0.00 5.34
960 1729 1.591863 GCTAACCTGGCGATCGACC 60.592 63.158 20.39 19.00 0.00 4.79
961 1730 0.666913 TAGCTAACCTGGCGATCGAC 59.333 55.000 21.57 18.80 34.52 4.20
1006 1775 2.575525 CTCGCTGTCGCTCGTCAG 60.576 66.667 11.13 11.13 35.09 3.51
1019 1788 0.664224 GCTGTAGTACTCCTCCTCGC 59.336 60.000 0.00 0.00 0.00 5.03
1068 1846 2.341101 GGTCCGGAAGCTCAGACGA 61.341 63.158 5.23 0.00 0.00 4.20
1071 1849 3.760035 GCGGTCCGGAAGCTCAGA 61.760 66.667 21.78 0.00 0.00 3.27
1072 1850 4.821589 GGCGGTCCGGAAGCTCAG 62.822 72.222 26.04 8.97 0.00 3.35
1134 1915 1.866601 TCGCCATACAAGCAATCATCG 59.133 47.619 0.00 0.00 0.00 3.84
1173 1957 2.656897 CTCGTATTCATCGTACATGCCG 59.343 50.000 0.00 0.00 0.00 5.69
1238 2022 1.272760 ACCTCATCTCGTCCAGGACTT 60.273 52.381 17.95 0.00 0.00 3.01
1239 2023 0.333312 ACCTCATCTCGTCCAGGACT 59.667 55.000 17.95 0.00 0.00 3.85
1713 4404 4.340019 TCGCCGTACCGTTTCGCA 62.340 61.111 0.00 0.00 0.00 5.10
1743 4434 0.607217 TGCTCTCCTCCACGTACGAA 60.607 55.000 24.41 5.93 0.00 3.85
2208 4899 1.267932 CGCTCGTAGTAGTGCAGGTAC 60.268 57.143 0.00 0.00 0.00 3.34
2397 5088 3.976902 GAAGGCGTACGTCCACCGG 62.977 68.421 24.11 0.00 42.24 5.28
2796 9991 6.151648 AGCCAATTACTACTACGTTGTACAGA 59.848 38.462 5.73 0.00 0.00 3.41
2829 10026 5.977635 TGATAATCGTCCTAGCCAATATGG 58.022 41.667 0.00 0.00 41.55 2.74
2844 10041 2.614057 GAGTTGGCCCACTTGATAATCG 59.386 50.000 11.42 0.00 0.00 3.34
2845 10042 3.629398 CAGAGTTGGCCCACTTGATAATC 59.371 47.826 11.42 0.00 0.00 1.75
2846 10043 3.624777 CAGAGTTGGCCCACTTGATAAT 58.375 45.455 11.42 0.00 0.00 1.28
2919 10118 7.954666 TTTTGGGACAGAGGGAATATTTAAG 57.045 36.000 0.00 0.00 42.39 1.85
2923 10122 6.551227 GCTTATTTTGGGACAGAGGGAATATT 59.449 38.462 0.00 0.00 42.39 1.28
2925 10124 5.445964 GCTTATTTTGGGACAGAGGGAATA 58.554 41.667 0.00 0.00 42.39 1.75
2926 10125 4.281657 GCTTATTTTGGGACAGAGGGAAT 58.718 43.478 0.00 0.00 42.39 3.01
2928 10127 2.355716 CGCTTATTTTGGGACAGAGGGA 60.356 50.000 0.00 0.00 42.39 4.20
2929 10128 2.017049 CGCTTATTTTGGGACAGAGGG 58.983 52.381 0.00 0.00 42.39 4.30
2930 10129 2.939103 CTCGCTTATTTTGGGACAGAGG 59.061 50.000 0.00 0.00 42.39 3.69
2931 10130 3.600388 ACTCGCTTATTTTGGGACAGAG 58.400 45.455 0.00 0.00 42.39 3.35
2932 10131 3.695830 ACTCGCTTATTTTGGGACAGA 57.304 42.857 0.00 0.00 42.39 3.41
2933 10132 4.250464 TGTACTCGCTTATTTTGGGACAG 58.750 43.478 0.00 0.00 42.39 3.51
2934 10133 4.250464 CTGTACTCGCTTATTTTGGGACA 58.750 43.478 0.00 0.00 0.00 4.02
2935 10134 4.251268 ACTGTACTCGCTTATTTTGGGAC 58.749 43.478 0.00 0.00 0.00 4.46
2937 10136 4.092968 GTGACTGTACTCGCTTATTTTGGG 59.907 45.833 0.00 0.00 0.00 4.12
2939 10138 6.467723 AAGTGACTGTACTCGCTTATTTTG 57.532 37.500 8.68 0.00 38.87 2.44
2944 10143 6.588756 CCAAAATAAGTGACTGTACTCGCTTA 59.411 38.462 16.16 16.16 43.83 3.09
2946 10145 4.929808 CCAAAATAAGTGACTGTACTCGCT 59.070 41.667 0.00 0.00 32.13 4.93
2947 10146 4.092968 CCCAAAATAAGTGACTGTACTCGC 59.907 45.833 0.00 0.00 0.00 5.03
2948 10147 5.347907 GTCCCAAAATAAGTGACTGTACTCG 59.652 44.000 0.00 0.00 0.00 4.18
2949 10148 5.347907 CGTCCCAAAATAAGTGACTGTACTC 59.652 44.000 0.00 0.00 0.00 2.59
2950 10149 5.235516 CGTCCCAAAATAAGTGACTGTACT 58.764 41.667 0.00 0.00 0.00 2.73
2951 10150 4.390909 CCGTCCCAAAATAAGTGACTGTAC 59.609 45.833 0.00 0.00 0.00 2.90
2952 10151 4.283978 TCCGTCCCAAAATAAGTGACTGTA 59.716 41.667 0.00 0.00 0.00 2.74
2954 10153 3.670625 TCCGTCCCAAAATAAGTGACTG 58.329 45.455 0.00 0.00 0.00 3.51
2956 10155 5.441709 TTTTCCGTCCCAAAATAAGTGAC 57.558 39.130 0.00 0.00 0.00 3.67
2958 10157 5.838529 ACTTTTTCCGTCCCAAAATAAGTG 58.161 37.500 0.00 0.00 0.00 3.16
2959 10158 7.770366 ATACTTTTTCCGTCCCAAAATAAGT 57.230 32.000 0.00 0.00 0.00 2.24
2986 10185 9.113838 CAAGAAAGCACACCTACATCTATTATT 57.886 33.333 0.00 0.00 0.00 1.40
2998 10197 5.483685 TCACTATACAAGAAAGCACACCT 57.516 39.130 0.00 0.00 0.00 4.00
2999 10198 6.743575 ATTCACTATACAAGAAAGCACACC 57.256 37.500 0.00 0.00 0.00 4.16
3062 10261 5.876460 TCTAAGGTAATTTTCCACGCTTACC 59.124 40.000 0.00 0.00 42.17 2.85
3075 10274 7.398024 AGTGTTGAAGATGCTCTAAGGTAATT 58.602 34.615 0.00 0.00 0.00 1.40
3185 10390 3.938963 ACATGTAGGCATTAGTGTTTCCG 59.061 43.478 0.00 0.00 31.99 4.30
3186 10391 6.017109 CCATACATGTAGGCATTAGTGTTTCC 60.017 42.308 12.01 0.00 31.99 3.13
3187 10392 6.017109 CCCATACATGTAGGCATTAGTGTTTC 60.017 42.308 12.01 0.00 31.99 2.78
3189 10394 5.376625 CCCATACATGTAGGCATTAGTGTT 58.623 41.667 12.01 0.00 31.99 3.32
3190 10395 4.746702 GCCCATACATGTAGGCATTAGTGT 60.747 45.833 24.23 0.00 45.07 3.55
3191 10396 3.753272 GCCCATACATGTAGGCATTAGTG 59.247 47.826 24.23 10.50 45.07 2.74
3192 10397 3.557054 CGCCCATACATGTAGGCATTAGT 60.557 47.826 26.84 1.90 46.08 2.24
3193 10398 3.002791 CGCCCATACATGTAGGCATTAG 58.997 50.000 26.84 12.95 46.08 1.73
3194 10399 2.370519 ACGCCCATACATGTAGGCATTA 59.629 45.455 26.84 1.23 46.08 1.90
3195 10400 1.142870 ACGCCCATACATGTAGGCATT 59.857 47.619 26.84 15.39 46.08 3.56
3197 10402 0.544223 AACGCCCATACATGTAGGCA 59.456 50.000 26.84 2.98 46.08 4.75
3198 10403 1.333619 CAAACGCCCATACATGTAGGC 59.666 52.381 20.92 20.92 42.18 3.93
3199 10404 1.333619 GCAAACGCCCATACATGTAGG 59.666 52.381 11.91 11.22 0.00 3.18
3200 10405 2.013400 TGCAAACGCCCATACATGTAG 58.987 47.619 11.91 3.82 0.00 2.74
3202 10407 1.405105 GATGCAAACGCCCATACATGT 59.595 47.619 2.69 2.69 0.00 3.21
3203 10408 1.677576 AGATGCAAACGCCCATACATG 59.322 47.619 0.00 0.00 0.00 3.21
3204 10409 1.949525 GAGATGCAAACGCCCATACAT 59.050 47.619 0.00 0.00 0.00 2.29
3206 10411 0.304705 CGAGATGCAAACGCCCATAC 59.695 55.000 0.00 0.00 0.00 2.39
3207 10412 0.107897 ACGAGATGCAAACGCCCATA 60.108 50.000 9.71 0.00 0.00 2.74
3209 10414 1.573829 GAACGAGATGCAAACGCCCA 61.574 55.000 9.71 0.00 0.00 5.36
3210 10415 1.134694 GAACGAGATGCAAACGCCC 59.865 57.895 9.71 0.60 0.00 6.13
3212 10417 0.234625 TGTGAACGAGATGCAAACGC 59.765 50.000 9.71 0.19 0.00 4.84
3213 10418 1.718361 CGTGTGAACGAGATGCAAACG 60.718 52.381 0.00 0.00 36.99 3.60
3214 10419 1.937359 CGTGTGAACGAGATGCAAAC 58.063 50.000 0.00 0.00 34.64 2.93
3215 10420 0.234625 GCGTGTGAACGAGATGCAAA 59.765 50.000 1.87 0.00 34.64 3.68
3216 10421 1.859398 GCGTGTGAACGAGATGCAA 59.141 52.632 1.87 0.00 34.64 4.08
3217 10422 2.371923 CGCGTGTGAACGAGATGCA 61.372 57.895 0.00 0.00 34.96 3.96
3219 10424 3.842602 ACGCGTGTGAACGAGATG 58.157 55.556 12.93 0.00 36.76 2.90
3235 10440 1.931172 CATAAACGGACGTGGATCCAC 59.069 52.381 31.59 31.59 43.01 4.02
3236 10441 1.134640 CCATAAACGGACGTGGATCCA 60.135 52.381 11.44 11.44 38.87 3.41
3237 10442 1.134610 ACCATAAACGGACGTGGATCC 60.135 52.381 4.20 4.20 35.69 3.36
3238 10443 2.304751 ACCATAAACGGACGTGGATC 57.695 50.000 0.00 0.00 35.69 3.36
3240 10445 1.798283 CAACCATAAACGGACGTGGA 58.202 50.000 0.00 0.00 35.69 4.02
3241 10446 0.167251 GCAACCATAAACGGACGTGG 59.833 55.000 0.00 0.00 37.74 4.94
3242 10447 0.869068 TGCAACCATAAACGGACGTG 59.131 50.000 0.00 0.00 0.00 4.49
3243 10448 0.869730 GTGCAACCATAAACGGACGT 59.130 50.000 0.00 0.00 0.00 4.34
3245 10450 1.149987 TCGTGCAACCATAAACGGAC 58.850 50.000 0.00 0.00 36.70 4.79
3246 10451 1.880271 TTCGTGCAACCATAAACGGA 58.120 45.000 0.00 0.00 36.70 4.69
3247 10452 2.418628 AGATTCGTGCAACCATAAACGG 59.581 45.455 0.00 0.00 36.70 4.44
3248 10453 3.740044 AGATTCGTGCAACCATAAACG 57.260 42.857 0.00 0.00 37.38 3.60
3249 10454 4.165779 CCAAGATTCGTGCAACCATAAAC 58.834 43.478 0.00 0.00 0.00 2.01
3250 10455 3.366883 GCCAAGATTCGTGCAACCATAAA 60.367 43.478 0.00 0.00 0.00 1.40
3251 10456 2.163412 GCCAAGATTCGTGCAACCATAA 59.837 45.455 0.00 0.00 0.00 1.90
3252 10457 1.742831 GCCAAGATTCGTGCAACCATA 59.257 47.619 0.00 0.00 0.00 2.74
3253 10458 0.527565 GCCAAGATTCGTGCAACCAT 59.472 50.000 0.00 0.00 0.00 3.55
3254 10459 0.821301 TGCCAAGATTCGTGCAACCA 60.821 50.000 0.00 0.00 0.00 3.67
3255 10460 0.527565 ATGCCAAGATTCGTGCAACC 59.472 50.000 0.00 0.00 37.27 3.77
3256 10461 1.068333 ACATGCCAAGATTCGTGCAAC 60.068 47.619 0.00 0.00 37.27 4.17
3258 10463 1.246649 AACATGCCAAGATTCGTGCA 58.753 45.000 0.00 0.00 38.23 4.57
3259 10464 1.987770 CAAACATGCCAAGATTCGTGC 59.012 47.619 0.00 0.00 0.00 5.34
3260 10465 2.981805 CACAAACATGCCAAGATTCGTG 59.018 45.455 0.00 0.00 0.00 4.35
3262 10467 2.030007 ACCACAAACATGCCAAGATTCG 60.030 45.455 0.00 0.00 0.00 3.34
3265 10470 1.001181 GCACCACAAACATGCCAAGAT 59.999 47.619 0.00 0.00 33.06 2.40
3266 10471 0.388659 GCACCACAAACATGCCAAGA 59.611 50.000 0.00 0.00 33.06 3.02
3267 10472 2.903284 GCACCACAAACATGCCAAG 58.097 52.632 0.00 0.00 33.06 3.61
3272 10477 0.947960 TACGTGGCACCACAAACATG 59.052 50.000 19.38 4.79 46.47 3.21
3273 10478 1.234821 CTACGTGGCACCACAAACAT 58.765 50.000 19.38 2.35 46.47 2.71
3274 10479 0.816018 CCTACGTGGCACCACAAACA 60.816 55.000 19.38 0.77 46.47 2.83
3275 10480 0.533308 TCCTACGTGGCACCACAAAC 60.533 55.000 19.38 0.00 46.47 2.93
3282 10487 2.108278 AACCCAGTCCTACGTGGCAC 62.108 60.000 7.79 7.79 35.26 5.01
3283 10488 1.839747 AACCCAGTCCTACGTGGCA 60.840 57.895 0.00 0.00 35.26 4.92
3284 10489 1.375523 CAACCCAGTCCTACGTGGC 60.376 63.158 0.00 0.00 35.26 5.01
3286 10491 0.320421 CACCAACCCAGTCCTACGTG 60.320 60.000 0.00 0.00 0.00 4.49
3287 10492 0.761702 ACACCAACCCAGTCCTACGT 60.762 55.000 0.00 0.00 0.00 3.57
3288 10493 0.320421 CACACCAACCCAGTCCTACG 60.320 60.000 0.00 0.00 0.00 3.51
3290 10495 0.762418 CACACACCAACCCAGTCCTA 59.238 55.000 0.00 0.00 0.00 2.94
3291 10496 1.531748 CACACACCAACCCAGTCCT 59.468 57.895 0.00 0.00 0.00 3.85
3292 10497 1.528309 CCACACACCAACCCAGTCC 60.528 63.158 0.00 0.00 0.00 3.85
3293 10498 1.528309 CCCACACACCAACCCAGTC 60.528 63.158 0.00 0.00 0.00 3.51
3296 10501 2.595954 AATGCCCACACACCAACCCA 62.596 55.000 0.00 0.00 0.00 4.51
3297 10502 1.815817 GAATGCCCACACACCAACCC 61.816 60.000 0.00 0.00 0.00 4.11
3298 10503 1.112315 TGAATGCCCACACACCAACC 61.112 55.000 0.00 0.00 0.00 3.77
3299 10504 0.968405 ATGAATGCCCACACACCAAC 59.032 50.000 0.00 0.00 0.00 3.77
3300 10505 1.255882 GATGAATGCCCACACACCAA 58.744 50.000 0.00 0.00 0.00 3.67
3301 10506 0.611618 GGATGAATGCCCACACACCA 60.612 55.000 0.00 0.00 0.00 4.17
3302 10507 1.656818 CGGATGAATGCCCACACACC 61.657 60.000 0.00 0.00 0.00 4.16
3303 10508 1.656818 CCGGATGAATGCCCACACAC 61.657 60.000 0.00 0.00 0.00 3.82
3304 10509 1.378382 CCGGATGAATGCCCACACA 60.378 57.895 0.00 0.00 0.00 3.72
3305 10510 1.376609 GACCGGATGAATGCCCACAC 61.377 60.000 9.46 0.00 0.00 3.82
3307 10512 2.180204 CGACCGGATGAATGCCCAC 61.180 63.158 9.46 0.00 0.00 4.61
3310 10515 2.377628 TAGGCGACCGGATGAATGCC 62.378 60.000 9.46 11.79 42.76 4.40
3311 10516 0.531974 TTAGGCGACCGGATGAATGC 60.532 55.000 9.46 1.78 0.00 3.56
3312 10517 1.597663 GTTTAGGCGACCGGATGAATG 59.402 52.381 9.46 0.00 0.00 2.67
3313 10518 1.805120 CGTTTAGGCGACCGGATGAAT 60.805 52.381 9.46 0.00 0.00 2.57
3314 10519 0.458889 CGTTTAGGCGACCGGATGAA 60.459 55.000 9.46 0.00 0.00 2.57
3315 10520 1.140161 CGTTTAGGCGACCGGATGA 59.860 57.895 9.46 0.00 0.00 2.92
3319 10524 2.438954 CGAACGTTTAGGCGACCGG 61.439 63.158 0.46 0.00 35.59 5.28
3320 10525 1.277495 AACGAACGTTTAGGCGACCG 61.277 55.000 13.23 7.10 34.22 4.79
3321 10526 0.861185 AAACGAACGTTTAGGCGACC 59.139 50.000 20.87 0.00 45.26 4.79
3322 10527 2.033832 TGAAAACGAACGTTTAGGCGAC 60.034 45.455 22.13 11.81 46.22 5.19
3323 10528 2.033832 GTGAAAACGAACGTTTAGGCGA 60.034 45.455 22.13 5.70 46.22 5.54
3324 10529 2.292237 GTGAAAACGAACGTTTAGGCG 58.708 47.619 22.13 3.62 46.22 5.52
3325 10530 2.031930 TGGTGAAAACGAACGTTTAGGC 59.968 45.455 22.13 15.65 46.22 3.93
3326 10531 3.063725 TGTGGTGAAAACGAACGTTTAGG 59.936 43.478 22.13 0.00 46.22 2.69
3327 10532 4.023783 GTGTGGTGAAAACGAACGTTTAG 58.976 43.478 22.13 2.40 46.22 1.85
3331 10536 0.370958 CGTGTGGTGAAAACGAACGT 59.629 50.000 0.00 0.00 39.64 3.99
3332 10537 0.315544 CCGTGTGGTGAAAACGAACG 60.316 55.000 0.00 0.00 39.64 3.95
3333 10538 1.008329 TCCGTGTGGTGAAAACGAAC 58.992 50.000 0.00 0.00 39.64 3.95
3336 10541 0.306533 CCTTCCGTGTGGTGAAAACG 59.693 55.000 0.00 0.00 36.30 3.60
3337 10542 1.332686 GTCCTTCCGTGTGGTGAAAAC 59.667 52.381 0.00 0.00 36.30 2.43
3342 10547 1.301716 CCAGTCCTTCCGTGTGGTG 60.302 63.158 0.00 0.00 36.30 4.17
3343 10548 1.764854 ACCAGTCCTTCCGTGTGGT 60.765 57.895 0.00 0.00 36.66 4.16
3344 10549 1.301716 CACCAGTCCTTCCGTGTGG 60.302 63.158 0.00 0.00 0.00 4.17
3347 10552 0.880278 CACACACCAGTCCTTCCGTG 60.880 60.000 0.00 0.00 0.00 4.94
3348 10553 1.445942 CACACACCAGTCCTTCCGT 59.554 57.895 0.00 0.00 0.00 4.69
3349 10554 1.301716 CCACACACCAGTCCTTCCG 60.302 63.158 0.00 0.00 0.00 4.30
3350 10555 1.073199 CCCACACACCAGTCCTTCC 59.927 63.158 0.00 0.00 0.00 3.46
3352 10557 1.279025 ACACCCACACACCAGTCCTT 61.279 55.000 0.00 0.00 0.00 3.36
3353 10558 1.279025 AACACCCACACACCAGTCCT 61.279 55.000 0.00 0.00 0.00 3.85
3354 10559 0.395173 AAACACCCACACACCAGTCC 60.395 55.000 0.00 0.00 0.00 3.85
3355 10560 2.218603 CTAAACACCCACACACCAGTC 58.781 52.381 0.00 0.00 0.00 3.51
3357 10562 0.951558 GCTAAACACCCACACACCAG 59.048 55.000 0.00 0.00 0.00 4.00
3359 10564 0.951558 CTGCTAAACACCCACACACC 59.048 55.000 0.00 0.00 0.00 4.16
3360 10565 1.675552 ACTGCTAAACACCCACACAC 58.324 50.000 0.00 0.00 0.00 3.82
3361 10566 2.294074 GAACTGCTAAACACCCACACA 58.706 47.619 0.00 0.00 0.00 3.72
3364 10569 0.237498 GCGAACTGCTAAACACCCAC 59.763 55.000 0.00 0.00 41.73 4.61
3365 10570 0.887387 GGCGAACTGCTAAACACCCA 60.887 55.000 0.00 0.00 45.43 4.51
3366 10571 1.583495 GGGCGAACTGCTAAACACCC 61.583 60.000 0.00 0.00 45.43 4.61
3368 10573 0.237498 GTGGGCGAACTGCTAAACAC 59.763 55.000 0.00 0.00 45.43 3.32
3370 10575 0.237498 GTGTGGGCGAACTGCTAAAC 59.763 55.000 0.00 0.00 45.43 2.01
3372 10577 0.602638 CTGTGTGGGCGAACTGCTAA 60.603 55.000 0.00 0.00 45.43 3.09
3373 10578 1.005037 CTGTGTGGGCGAACTGCTA 60.005 57.895 0.00 0.00 45.43 3.49
3374 10579 2.281070 CTGTGTGGGCGAACTGCT 60.281 61.111 0.00 0.00 45.43 4.24
3375 10580 2.117941 GAACTGTGTGGGCGAACTGC 62.118 60.000 0.00 0.00 45.38 4.40
3376 10581 1.831389 CGAACTGTGTGGGCGAACTG 61.831 60.000 0.00 0.00 0.00 3.16
3378 10583 2.935955 CGAACTGTGTGGGCGAAC 59.064 61.111 0.00 0.00 0.00 3.95
3379 10584 2.970324 GCGAACTGTGTGGGCGAA 60.970 61.111 0.00 0.00 0.00 4.70
3382 10587 2.813226 TATGGGCGAACTGTGTGGGC 62.813 60.000 0.00 0.00 0.00 5.36
3383 10588 1.024579 GTATGGGCGAACTGTGTGGG 61.025 60.000 0.00 0.00 0.00 4.61
3384 10589 0.321210 TGTATGGGCGAACTGTGTGG 60.321 55.000 0.00 0.00 0.00 4.17
3385 10590 1.078709 CTGTATGGGCGAACTGTGTG 58.921 55.000 0.00 0.00 0.00 3.82
3386 10591 0.036388 CCTGTATGGGCGAACTGTGT 60.036 55.000 0.00 0.00 0.00 3.72
3387 10592 2.767536 CCTGTATGGGCGAACTGTG 58.232 57.895 0.00 0.00 0.00 3.66
3398 10603 0.677731 CACACACCAGCCCCTGTATG 60.678 60.000 0.00 0.00 0.00 2.39
3400 10605 2.525124 CCACACACCAGCCCCTGTA 61.525 63.158 0.00 0.00 0.00 2.74
3401 10606 3.889692 CCACACACCAGCCCCTGT 61.890 66.667 0.00 0.00 0.00 4.00
3402 10607 4.666253 CCCACACACCAGCCCCTG 62.666 72.222 0.00 0.00 0.00 4.45
3405 10610 4.684134 ATGCCCACACACCAGCCC 62.684 66.667 0.00 0.00 0.00 5.19
3406 10611 0.897863 TAAATGCCCACACACCAGCC 60.898 55.000 0.00 0.00 0.00 4.85
3407 10612 1.134946 GATAAATGCCCACACACCAGC 59.865 52.381 0.00 0.00 0.00 4.85
3408 10613 2.424601 CTGATAAATGCCCACACACCAG 59.575 50.000 0.00 0.00 0.00 4.00
3410 10615 2.446435 ACTGATAAATGCCCACACACC 58.554 47.619 0.00 0.00 0.00 4.16
3411 10616 3.426159 CGAACTGATAAATGCCCACACAC 60.426 47.826 0.00 0.00 0.00 3.82
3412 10617 2.746904 CGAACTGATAAATGCCCACACA 59.253 45.455 0.00 0.00 0.00 3.72
3414 10619 1.742831 GCGAACTGATAAATGCCCACA 59.257 47.619 0.00 0.00 0.00 4.17
3415 10620 1.065551 GGCGAACTGATAAATGCCCAC 59.934 52.381 0.00 0.00 36.51 4.61
3416 10621 1.388547 GGCGAACTGATAAATGCCCA 58.611 50.000 0.00 0.00 36.51 5.36
3418 10623 1.065551 GTGGGCGAACTGATAAATGCC 59.934 52.381 0.00 0.00 41.72 4.40
3419 10624 1.742831 TGTGGGCGAACTGATAAATGC 59.257 47.619 0.00 0.00 0.00 3.56
3420 10625 2.223021 CGTGTGGGCGAACTGATAAATG 60.223 50.000 0.00 0.00 0.00 2.32
3422 10627 1.434555 CGTGTGGGCGAACTGATAAA 58.565 50.000 0.00 0.00 0.00 1.40
3424 10629 1.447140 GCGTGTGGGCGAACTGATA 60.447 57.895 0.00 0.00 0.00 2.15
3425 10630 2.742372 GCGTGTGGGCGAACTGAT 60.742 61.111 0.00 0.00 0.00 2.90
3445 11778 1.194781 TTGAGTGTGGGAGAGGAGGC 61.195 60.000 0.00 0.00 0.00 4.70
3446 11779 1.277557 CTTTGAGTGTGGGAGAGGAGG 59.722 57.143 0.00 0.00 0.00 4.30
3451 11784 0.250467 GCAGCTTTGAGTGTGGGAGA 60.250 55.000 0.00 0.00 0.00 3.71
3454 11787 1.521450 CTGGCAGCTTTGAGTGTGGG 61.521 60.000 0.00 0.00 0.00 4.61
3457 11790 1.027357 CAACTGGCAGCTTTGAGTGT 58.973 50.000 15.89 0.00 0.00 3.55
3458 11791 0.318445 GCAACTGGCAGCTTTGAGTG 60.318 55.000 15.89 2.83 43.97 3.51
3459 11792 2.036236 GCAACTGGCAGCTTTGAGT 58.964 52.632 15.89 0.00 43.97 3.41
3460 11793 1.457823 TGGCAACTGGCAGCTTTGAG 61.458 55.000 15.89 0.00 46.12 3.02
3469 11802 1.219646 CAAAACACATGGCAACTGGC 58.780 50.000 0.00 0.00 43.74 4.85
3470 11803 1.219646 GCAAAACACATGGCAACTGG 58.780 50.000 0.00 0.00 37.61 4.00
3471 11804 1.862201 CTGCAAAACACATGGCAACTG 59.138 47.619 0.00 0.00 35.59 3.16
3472 11805 1.202557 CCTGCAAAACACATGGCAACT 60.203 47.619 0.00 0.00 35.59 3.16
3473 11806 1.219646 CCTGCAAAACACATGGCAAC 58.780 50.000 0.00 0.00 35.59 4.17
3474 11807 0.829333 ACCTGCAAAACACATGGCAA 59.171 45.000 0.00 0.00 35.59 4.52
3475 11808 0.829333 AACCTGCAAAACACATGGCA 59.171 45.000 0.00 0.00 34.66 4.92
3476 11809 2.223923 TGTAACCTGCAAAACACATGGC 60.224 45.455 0.00 0.00 0.00 4.40
3477 11810 3.724508 TGTAACCTGCAAAACACATGG 57.275 42.857 0.00 0.00 0.00 3.66
3478 11811 3.989167 CCATGTAACCTGCAAAACACATG 59.011 43.478 17.74 17.74 41.71 3.21
3479 11812 3.554752 GCCATGTAACCTGCAAAACACAT 60.555 43.478 0.00 0.00 0.00 3.21
3480 11813 2.223923 GCCATGTAACCTGCAAAACACA 60.224 45.455 0.00 0.00 0.00 3.72
3481 11814 2.223923 TGCCATGTAACCTGCAAAACAC 60.224 45.455 0.00 0.00 0.00 3.32
3482 11815 2.034878 TGCCATGTAACCTGCAAAACA 58.965 42.857 0.00 0.00 0.00 2.83
3483 11816 2.799978 GTTGCCATGTAACCTGCAAAAC 59.200 45.455 6.41 0.00 44.44 2.43
3484 11817 2.697751 AGTTGCCATGTAACCTGCAAAA 59.302 40.909 6.41 0.00 44.44 2.44
3485 11818 2.035704 CAGTTGCCATGTAACCTGCAAA 59.964 45.455 6.41 0.00 44.44 3.68
3486 11819 1.612950 CAGTTGCCATGTAACCTGCAA 59.387 47.619 1.30 1.30 41.08 4.08
3487 11820 1.246649 CAGTTGCCATGTAACCTGCA 58.753 50.000 6.49 0.00 0.00 4.41
3488 11821 0.109132 GCAGTTGCCATGTAACCTGC 60.109 55.000 8.35 8.35 34.31 4.85
3501 11834 2.337532 GTGCAGCAAGGGCAGTTG 59.662 61.111 0.00 0.00 42.85 3.16
3502 11835 3.289834 CGTGCAGCAAGGGCAGTT 61.290 61.111 0.00 0.00 42.85 3.16
3507 11840 1.718757 GAATAGCCGTGCAGCAAGGG 61.719 60.000 26.50 17.82 33.72 3.95
3508 11841 0.745845 AGAATAGCCGTGCAGCAAGG 60.746 55.000 22.13 22.13 36.14 3.61
3509 11842 1.063174 GAAGAATAGCCGTGCAGCAAG 59.937 52.381 0.00 0.00 34.23 4.01
3510 11843 1.086696 GAAGAATAGCCGTGCAGCAA 58.913 50.000 0.00 0.00 34.23 3.91
3561 11894 2.374184 CATCAAATGGCTTTCCCGGTA 58.626 47.619 0.00 0.00 35.87 4.02
3609 11942 2.681848 CTCTAGCACCAAATGAAGCTGG 59.318 50.000 9.00 6.86 37.94 4.85
3688 12021 6.358974 TGGAATTGTAGAGATCACAGTCAA 57.641 37.500 0.00 0.00 0.00 3.18
3693 12026 6.312141 TGGATTGGAATTGTAGAGATCACA 57.688 37.500 0.00 0.00 0.00 3.58
3718 12051 2.799412 GTCGAGCTGATTCTATTGCTGG 59.201 50.000 0.00 0.00 35.76 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.