Multiple sequence alignment - TraesCS5A01G360600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G360600 chr5A 100.000 2519 0 0 1 2519 562109601 562107083 0.000000e+00 4652.0
1 TraesCS5A01G360600 chr5A 87.473 463 34 9 1109 1563 562100941 562100495 1.730000e-141 512.0
2 TraesCS5A01G360600 chr5A 81.977 516 54 14 1007 1519 562116955 562116476 3.900000e-108 401.0
3 TraesCS5A01G360600 chr5A 80.000 200 13 12 1815 2003 562100170 562099987 3.400000e-24 122.0
4 TraesCS5A01G360600 chr5A 95.455 44 1 1 1760 1802 395922660 395922703 4.500000e-08 69.4
5 TraesCS5A01G360600 chr5B 92.069 1614 96 17 4 1599 542321216 542319617 0.000000e+00 2242.0
6 TraesCS5A01G360600 chr5B 94.444 396 11 7 1800 2195 542319042 542318658 1.290000e-167 599.0
7 TraesCS5A01G360600 chr5B 84.698 464 23 18 1140 1592 542295617 542295191 1.080000e-113 420.0
8 TraesCS5A01G360600 chr5B 82.749 371 43 9 1149 1519 542331305 542330956 6.770000e-81 311.0
9 TraesCS5A01G360600 chr5B 87.259 259 19 9 1925 2175 542294905 542294653 1.480000e-72 283.0
10 TraesCS5A01G360600 chr5B 88.764 89 3 1 1615 1703 542319523 542319442 4.430000e-18 102.0
11 TraesCS5A01G360600 chr5B 95.556 45 0 2 1765 1807 507119330 507119286 1.250000e-08 71.3
12 TraesCS5A01G360600 chr5D 94.535 1171 44 10 445 1609 445063488 445062332 0.000000e+00 1790.0
13 TraesCS5A01G360600 chr5D 90.196 459 32 8 1138 1589 444976432 444975980 1.000000e-163 586.0
14 TraesCS5A01G360600 chr5D 94.851 369 12 3 1827 2195 445061636 445061275 1.010000e-158 569.0
15 TraesCS5A01G360600 chr5D 88.462 468 27 10 1140 1593 445056037 445055583 7.930000e-150 540.0
16 TraesCS5A01G360600 chr5D 91.247 377 22 4 4 375 445063855 445063485 1.040000e-138 503.0
17 TraesCS5A01G360600 chr5D 80.934 514 51 22 1007 1519 445072925 445072458 1.840000e-96 363.0
18 TraesCS5A01G360600 chr5D 82.867 286 23 12 1831 2110 445055173 445054908 1.510000e-57 233.0
19 TraesCS5A01G360600 chr5D 92.481 133 8 2 1614 1746 445062243 445062113 3.310000e-44 189.0
20 TraesCS5A01G360600 chr5D 79.699 266 37 12 1871 2124 445111188 445110928 2.580000e-40 176.0
21 TraesCS5A01G360600 chr3D 93.617 47 2 1 1758 1803 253553849 253553803 4.500000e-08 69.4
22 TraesCS5A01G360600 chr2B 95.455 44 1 1 1760 1802 774662000 774662043 4.500000e-08 69.4
23 TraesCS5A01G360600 chr3A 90.566 53 2 3 1762 1812 22610858 22610909 1.620000e-07 67.6
24 TraesCS5A01G360600 chr3A 87.719 57 4 3 1758 1812 131651855 131651910 2.090000e-06 63.9
25 TraesCS5A01G360600 chr6D 91.667 48 3 1 1758 1804 31762054 31762101 5.820000e-07 65.8
26 TraesCS5A01G360600 chr6D 86.667 60 5 3 1762 1818 394887705 394887764 2.090000e-06 63.9
27 TraesCS5A01G360600 chr3B 90.000 50 3 1 1758 1807 51027146 51027099 2.090000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G360600 chr5A 562107083 562109601 2518 True 4652.00 4652 100.0000 1 2519 1 chr5A.!!$R1 2518
1 TraesCS5A01G360600 chr5A 562099987 562100941 954 True 317.00 512 83.7365 1109 2003 2 chr5A.!!$R3 894
2 TraesCS5A01G360600 chr5B 542318658 542321216 2558 True 981.00 2242 91.7590 4 2195 3 chr5B.!!$R4 2191
3 TraesCS5A01G360600 chr5B 542294653 542295617 964 True 351.50 420 85.9785 1140 2175 2 chr5B.!!$R3 1035
4 TraesCS5A01G360600 chr5D 445061275 445063855 2580 True 762.75 1790 93.2785 4 2195 4 chr5D.!!$R5 2191
5 TraesCS5A01G360600 chr5D 445054908 445056037 1129 True 386.50 540 85.6645 1140 2110 2 chr5D.!!$R4 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 419 0.563173 ATGGGGGAGCTAGCTACTCA 59.437 55.0 28.29 23.82 35.79 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 3273 0.181114 TGGCGGAGATTTGGAGATGG 59.819 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.330267 GGATCATTATCTTCGAGTGGCC 58.670 50.000 0.00 0.00 32.29 5.36
34 35 4.060038 TCATTATCTTCGAGTGGCCTTC 57.940 45.455 3.32 0.31 0.00 3.46
43 44 1.692411 GAGTGGCCTTCCAAAGTTGT 58.308 50.000 3.32 0.00 45.53 3.32
44 45 1.609072 GAGTGGCCTTCCAAAGTTGTC 59.391 52.381 3.32 0.00 45.53 3.18
80 83 3.110293 TGGTACACACCTAGCCTATGT 57.890 47.619 0.00 0.00 45.98 2.29
102 105 5.948758 TGTTGGCTAATTGATTGTCACCATA 59.051 36.000 0.00 0.00 0.00 2.74
152 155 8.094798 ACACAACTAAACAATAGTATGGTGTG 57.905 34.615 10.83 10.83 41.49 3.82
215 218 0.984961 AATGCCAGCTCCTCCTGCTA 60.985 55.000 0.00 0.00 38.92 3.49
312 319 2.909006 ACTCATCCCTTCAGAGCAAGAA 59.091 45.455 0.00 0.00 32.71 2.52
313 320 3.328931 ACTCATCCCTTCAGAGCAAGAAA 59.671 43.478 0.00 0.00 32.71 2.52
314 321 3.679389 TCATCCCTTCAGAGCAAGAAAC 58.321 45.455 0.00 0.00 0.00 2.78
391 402 6.923928 TCCATGTATGTTCACACATGTATG 57.076 37.500 18.57 0.00 46.89 2.39
408 419 0.563173 ATGGGGGAGCTAGCTACTCA 59.437 55.000 28.29 23.82 35.79 3.41
410 421 0.753867 GGGGGAGCTAGCTACTCAAC 59.246 60.000 28.29 14.65 35.79 3.18
437 448 6.210385 TGCAAGCTAATTTCCTCCAATGTTAA 59.790 34.615 0.00 0.00 0.00 2.01
541 552 6.640907 TGCACATGAACGTGTATATAGATCAC 59.359 38.462 0.00 0.00 39.19 3.06
553 564 8.807118 GTGTATATAGATCACTGAAATCTCCCA 58.193 37.037 0.00 0.00 35.20 4.37
554 565 9.029368 TGTATATAGATCACTGAAATCTCCCAG 57.971 37.037 0.00 0.00 35.20 4.45
571 582 5.307716 TCTCCCAGGCAAAAGAAAAATCATT 59.692 36.000 0.00 0.00 0.00 2.57
592 603 5.494632 TTTGAAGTCTTTCTTTTCCGACC 57.505 39.130 0.00 0.00 36.40 4.79
615 626 4.874534 CCTTCATGGCGCACTTTG 57.125 55.556 10.83 0.16 0.00 2.77
642 653 5.153513 CACAGGGAAAACAATTACATCGTG 58.846 41.667 0.00 0.00 0.00 4.35
676 687 4.638421 TGTAAAATAAAGCTGGGACATCGG 59.362 41.667 0.00 0.00 38.20 4.18
733 744 1.067669 GCTGGATGCAGATCGACTACA 59.932 52.381 19.59 0.00 42.31 2.74
800 811 0.716108 CGCAGAAATGACAGGACGTC 59.284 55.000 7.13 7.13 45.61 4.34
807 818 3.821421 AATGACAGGACGTCCCTTATC 57.179 47.619 30.82 21.52 44.85 1.75
809 820 1.006758 TGACAGGACGTCCCTTATCCT 59.993 52.381 30.82 7.79 44.85 3.24
978 1000 4.934942 CCACACGCCGACGACACA 62.935 66.667 0.00 0.00 43.93 3.72
1018 1040 2.515071 ATGGAGATGGAGGGCGAGC 61.515 63.158 0.00 0.00 0.00 5.03
1074 1096 4.116328 CTCGACCTGCGCCTCGAA 62.116 66.667 18.72 7.09 38.41 3.71
1257 1279 2.127496 CAGAACGCGCACAAGCTG 60.127 61.111 5.73 3.17 39.10 4.24
1300 1322 4.060038 GCGACGTCCCCTCCGAAA 62.060 66.667 10.58 0.00 0.00 3.46
1301 1323 2.890371 CGACGTCCCCTCCGAAAT 59.110 61.111 10.58 0.00 0.00 2.17
1302 1324 1.217244 CGACGTCCCCTCCGAAATT 59.783 57.895 10.58 0.00 0.00 1.82
1586 1643 4.689812 GCATGGATATGTCTAGCTTGTCAG 59.310 45.833 0.00 0.00 36.65 3.51
1654 2003 8.954950 AACTAGATCACTGGATAACAAATCAG 57.045 34.615 0.00 0.00 32.67 2.90
1672 2021 4.908601 TCAGACAAAGCCCTCTGAATTA 57.091 40.909 0.00 0.00 39.97 1.40
1756 2622 7.527796 ACTAATATGCTACTACTCTCCCTCAA 58.472 38.462 0.00 0.00 0.00 3.02
1777 2643 7.095187 CCTCAAACTTTACTGATCTAAACGCTT 60.095 37.037 0.00 0.00 0.00 4.68
1840 2706 5.833406 TGTGAAACACATCACTTGAACAT 57.167 34.783 8.68 0.00 45.67 2.71
1872 2738 5.246203 CCCAGTGCTACTACACCACATATAT 59.754 44.000 0.00 0.00 41.67 0.86
1873 2739 6.159293 CCAGTGCTACTACACCACATATATG 58.841 44.000 11.29 11.29 41.67 1.78
2097 2973 0.916086 CCCCTGCCTATTACACCACA 59.084 55.000 0.00 0.00 0.00 4.17
2098 2974 1.494721 CCCCTGCCTATTACACCACAT 59.505 52.381 0.00 0.00 0.00 3.21
2099 2975 2.708861 CCCCTGCCTATTACACCACATA 59.291 50.000 0.00 0.00 0.00 2.29
2140 3025 5.249163 CACATATCCCCCATGATCTGACTAA 59.751 44.000 0.00 0.00 0.00 2.24
2141 3026 6.034659 ACATATCCCCCATGATCTGACTAAT 58.965 40.000 0.00 0.00 0.00 1.73
2142 3027 7.126268 CACATATCCCCCATGATCTGACTAATA 59.874 40.741 0.00 0.00 0.00 0.98
2145 3030 5.920347 TCCCCCATGATCTGACTAATAGAT 58.080 41.667 0.00 0.00 37.59 1.98
2188 3073 3.244249 ACTCGTCAAGGCTTCTAGCTTTT 60.244 43.478 0.00 0.00 38.55 2.27
2198 3083 6.447457 GGCTTCTAGCTTTTGCCTTAGCAC 62.447 50.000 10.98 0.00 45.20 4.40
2205 3090 4.028490 TGCCTTAGCACGGGGGTG 62.028 66.667 0.00 0.00 46.52 4.61
2206 3091 4.796495 GCCTTAGCACGGGGGTGG 62.796 72.222 0.00 0.00 39.53 4.61
2207 3092 4.796495 CCTTAGCACGGGGGTGGC 62.796 72.222 0.00 0.00 0.00 5.01
2208 3093 3.717294 CTTAGCACGGGGGTGGCT 61.717 66.667 0.00 0.00 41.51 4.75
2209 3094 2.284773 TTAGCACGGGGGTGGCTA 60.285 61.111 0.00 0.00 39.01 3.93
2210 3095 2.311688 CTTAGCACGGGGGTGGCTAG 62.312 65.000 0.00 0.00 40.81 3.42
2213 3098 3.782443 CACGGGGGTGGCTAGGTC 61.782 72.222 0.00 0.00 0.00 3.85
2214 3099 4.007323 ACGGGGGTGGCTAGGTCT 62.007 66.667 0.00 0.00 0.00 3.85
2215 3100 3.155167 CGGGGGTGGCTAGGTCTC 61.155 72.222 0.00 0.00 0.00 3.36
2216 3101 2.040606 GGGGGTGGCTAGGTCTCA 59.959 66.667 0.00 0.00 0.00 3.27
2217 3102 2.066999 GGGGGTGGCTAGGTCTCAG 61.067 68.421 0.00 0.00 0.00 3.35
2218 3103 1.306226 GGGGTGGCTAGGTCTCAGT 60.306 63.158 0.00 0.00 0.00 3.41
2219 3104 1.331399 GGGGTGGCTAGGTCTCAGTC 61.331 65.000 0.00 0.00 0.00 3.51
2220 3105 0.614979 GGGTGGCTAGGTCTCAGTCA 60.615 60.000 0.00 0.00 0.00 3.41
2221 3106 1.267121 GGTGGCTAGGTCTCAGTCAA 58.733 55.000 0.00 0.00 27.45 3.18
2222 3107 1.623811 GGTGGCTAGGTCTCAGTCAAA 59.376 52.381 0.00 0.00 27.45 2.69
2223 3108 2.237392 GGTGGCTAGGTCTCAGTCAAAT 59.763 50.000 0.00 0.00 27.45 2.32
2224 3109 3.451178 GGTGGCTAGGTCTCAGTCAAATA 59.549 47.826 0.00 0.00 27.45 1.40
2225 3110 4.081087 GGTGGCTAGGTCTCAGTCAAATAA 60.081 45.833 0.00 0.00 27.45 1.40
2226 3111 5.488341 GTGGCTAGGTCTCAGTCAAATAAA 58.512 41.667 0.00 0.00 27.45 1.40
2227 3112 6.116126 GTGGCTAGGTCTCAGTCAAATAAAT 58.884 40.000 0.00 0.00 27.45 1.40
2228 3113 7.272978 GTGGCTAGGTCTCAGTCAAATAAATA 58.727 38.462 0.00 0.00 27.45 1.40
2229 3114 7.934120 GTGGCTAGGTCTCAGTCAAATAAATAT 59.066 37.037 0.00 0.00 27.45 1.28
2230 3115 9.154632 TGGCTAGGTCTCAGTCAAATAAATATA 57.845 33.333 0.00 0.00 0.00 0.86
2231 3116 9.646427 GGCTAGGTCTCAGTCAAATAAATATAG 57.354 37.037 0.00 0.00 0.00 1.31
2290 3175 6.949578 GATTTTTCATGCAAAATCGAAGGA 57.050 33.333 22.05 0.00 41.18 3.36
2291 3176 7.350110 GATTTTTCATGCAAAATCGAAGGAA 57.650 32.000 22.05 0.00 41.18 3.36
2292 3177 7.910441 ATTTTTCATGCAAAATCGAAGGAAT 57.090 28.000 9.84 0.00 31.90 3.01
2293 3178 9.086336 GATTTTTCATGCAAAATCGAAGGAATA 57.914 29.630 22.05 0.00 41.18 1.75
2294 3179 8.824159 TTTTTCATGCAAAATCGAAGGAATAA 57.176 26.923 0.00 0.00 33.82 1.40
2295 3180 7.810766 TTTCATGCAAAATCGAAGGAATAAC 57.189 32.000 0.00 0.00 0.00 1.89
2296 3181 6.507958 TCATGCAAAATCGAAGGAATAACA 57.492 33.333 0.00 0.00 0.00 2.41
2297 3182 7.099266 TCATGCAAAATCGAAGGAATAACAT 57.901 32.000 0.00 0.00 0.00 2.71
2298 3183 7.195646 TCATGCAAAATCGAAGGAATAACATC 58.804 34.615 0.00 0.00 0.00 3.06
2299 3184 6.757897 TGCAAAATCGAAGGAATAACATCT 57.242 33.333 0.00 0.00 0.00 2.90
2300 3185 6.554419 TGCAAAATCGAAGGAATAACATCTG 58.446 36.000 0.00 0.00 0.00 2.90
2301 3186 6.374053 TGCAAAATCGAAGGAATAACATCTGA 59.626 34.615 0.00 0.00 0.00 3.27
2302 3187 6.909357 GCAAAATCGAAGGAATAACATCTGAG 59.091 38.462 0.00 0.00 0.00 3.35
2303 3188 7.201644 GCAAAATCGAAGGAATAACATCTGAGA 60.202 37.037 0.00 0.00 0.00 3.27
2304 3189 7.778470 AAATCGAAGGAATAACATCTGAGAC 57.222 36.000 0.00 0.00 0.00 3.36
2305 3190 6.723298 ATCGAAGGAATAACATCTGAGACT 57.277 37.500 0.00 0.00 0.00 3.24
2306 3191 6.531503 TCGAAGGAATAACATCTGAGACTT 57.468 37.500 0.00 0.00 0.00 3.01
2307 3192 7.640597 TCGAAGGAATAACATCTGAGACTTA 57.359 36.000 0.00 0.00 0.00 2.24
2308 3193 7.708051 TCGAAGGAATAACATCTGAGACTTAG 58.292 38.462 0.00 0.00 0.00 2.18
2309 3194 6.920758 CGAAGGAATAACATCTGAGACTTAGG 59.079 42.308 0.00 0.00 0.00 2.69
2310 3195 7.201830 CGAAGGAATAACATCTGAGACTTAGGA 60.202 40.741 0.00 0.00 0.00 2.94
2311 3196 7.979786 AGGAATAACATCTGAGACTTAGGAA 57.020 36.000 0.00 0.00 0.00 3.36
2312 3197 8.380742 AGGAATAACATCTGAGACTTAGGAAA 57.619 34.615 0.00 0.00 0.00 3.13
2313 3198 8.826765 AGGAATAACATCTGAGACTTAGGAAAA 58.173 33.333 0.00 0.00 0.00 2.29
2314 3199 8.884726 GGAATAACATCTGAGACTTAGGAAAAC 58.115 37.037 0.00 0.00 0.00 2.43
2315 3200 9.660180 GAATAACATCTGAGACTTAGGAAAACT 57.340 33.333 0.00 0.00 0.00 2.66
2316 3201 9.442047 AATAACATCTGAGACTTAGGAAAACTG 57.558 33.333 0.00 0.00 0.00 3.16
2317 3202 6.426646 ACATCTGAGACTTAGGAAAACTGT 57.573 37.500 0.00 0.00 0.00 3.55
2318 3203 6.831976 ACATCTGAGACTTAGGAAAACTGTT 58.168 36.000 0.00 0.00 0.00 3.16
2319 3204 6.931840 ACATCTGAGACTTAGGAAAACTGTTC 59.068 38.462 0.00 0.00 0.00 3.18
2320 3205 5.529791 TCTGAGACTTAGGAAAACTGTTCG 58.470 41.667 0.00 0.00 0.00 3.95
2321 3206 4.056050 TGAGACTTAGGAAAACTGTTCGC 58.944 43.478 0.00 0.00 0.00 4.70
2322 3207 3.400255 AGACTTAGGAAAACTGTTCGCC 58.600 45.455 0.00 0.00 0.00 5.54
2323 3208 3.071167 AGACTTAGGAAAACTGTTCGCCT 59.929 43.478 15.54 15.54 0.00 5.52
2324 3209 3.813724 GACTTAGGAAAACTGTTCGCCTT 59.186 43.478 16.19 0.00 0.00 4.35
2325 3210 4.964593 ACTTAGGAAAACTGTTCGCCTTA 58.035 39.130 16.19 8.94 0.00 2.69
2326 3211 5.370679 ACTTAGGAAAACTGTTCGCCTTAA 58.629 37.500 16.19 9.61 0.00 1.85
2327 3212 6.002082 ACTTAGGAAAACTGTTCGCCTTAAT 58.998 36.000 16.19 0.00 0.00 1.40
2328 3213 6.148976 ACTTAGGAAAACTGTTCGCCTTAATC 59.851 38.462 16.19 0.00 0.00 1.75
2329 3214 4.394729 AGGAAAACTGTTCGCCTTAATCA 58.605 39.130 7.97 0.00 0.00 2.57
2330 3215 4.215613 AGGAAAACTGTTCGCCTTAATCAC 59.784 41.667 7.97 0.00 0.00 3.06
2331 3216 4.473199 GAAAACTGTTCGCCTTAATCACC 58.527 43.478 0.00 0.00 0.00 4.02
2332 3217 3.418684 AACTGTTCGCCTTAATCACCT 57.581 42.857 0.00 0.00 0.00 4.00
2333 3218 4.546829 AACTGTTCGCCTTAATCACCTA 57.453 40.909 0.00 0.00 0.00 3.08
2334 3219 4.546829 ACTGTTCGCCTTAATCACCTAA 57.453 40.909 0.00 0.00 0.00 2.69
2335 3220 4.251268 ACTGTTCGCCTTAATCACCTAAC 58.749 43.478 0.00 0.00 0.00 2.34
2336 3221 4.250464 CTGTTCGCCTTAATCACCTAACA 58.750 43.478 0.00 0.00 0.00 2.41
2337 3222 4.839121 TGTTCGCCTTAATCACCTAACAT 58.161 39.130 0.00 0.00 0.00 2.71
2338 3223 5.979993 TGTTCGCCTTAATCACCTAACATA 58.020 37.500 0.00 0.00 0.00 2.29
2339 3224 6.588204 TGTTCGCCTTAATCACCTAACATAT 58.412 36.000 0.00 0.00 0.00 1.78
2340 3225 6.704493 TGTTCGCCTTAATCACCTAACATATC 59.296 38.462 0.00 0.00 0.00 1.63
2341 3226 6.665992 TCGCCTTAATCACCTAACATATCT 57.334 37.500 0.00 0.00 0.00 1.98
2342 3227 7.062749 TCGCCTTAATCACCTAACATATCTT 57.937 36.000 0.00 0.00 0.00 2.40
2343 3228 7.506114 TCGCCTTAATCACCTAACATATCTTT 58.494 34.615 0.00 0.00 0.00 2.52
2344 3229 7.990886 TCGCCTTAATCACCTAACATATCTTTT 59.009 33.333 0.00 0.00 0.00 2.27
2345 3230 8.283291 CGCCTTAATCACCTAACATATCTTTTC 58.717 37.037 0.00 0.00 0.00 2.29
2346 3231 8.283291 GCCTTAATCACCTAACATATCTTTTCG 58.717 37.037 0.00 0.00 0.00 3.46
2347 3232 8.774586 CCTTAATCACCTAACATATCTTTTCGG 58.225 37.037 0.00 0.00 0.00 4.30
2348 3233 9.326413 CTTAATCACCTAACATATCTTTTCGGT 57.674 33.333 0.00 0.00 0.00 4.69
2349 3234 7.787725 AATCACCTAACATATCTTTTCGGTC 57.212 36.000 0.00 0.00 0.00 4.79
2350 3235 6.540438 TCACCTAACATATCTTTTCGGTCT 57.460 37.500 0.00 0.00 0.00 3.85
2351 3236 6.570692 TCACCTAACATATCTTTTCGGTCTC 58.429 40.000 0.00 0.00 0.00 3.36
2352 3237 5.459107 CACCTAACATATCTTTTCGGTCTCG 59.541 44.000 0.00 0.00 37.82 4.04
2353 3238 4.444720 CCTAACATATCTTTTCGGTCTCGC 59.555 45.833 0.00 0.00 36.13 5.03
2354 3239 2.822764 ACATATCTTTTCGGTCTCGCC 58.177 47.619 0.00 0.00 36.13 5.54
2372 3257 2.399611 GTTTTCGATCAGGCGGCG 59.600 61.111 0.51 0.51 0.00 6.46
2373 3258 2.817834 TTTTCGATCAGGCGGCGG 60.818 61.111 9.78 1.99 0.00 6.13
2374 3259 3.303761 TTTTCGATCAGGCGGCGGA 62.304 57.895 15.08 15.08 0.00 5.54
2375 3260 4.508128 TTCGATCAGGCGGCGGAC 62.508 66.667 15.03 7.70 0.00 4.79
2385 3270 3.913573 CGGCGGACGCGAAATGAG 61.914 66.667 15.93 0.00 43.06 2.90
2386 3271 2.813908 GGCGGACGCGAAATGAGT 60.814 61.111 15.93 0.00 43.06 3.41
2387 3272 2.695646 GCGGACGCGAAATGAGTC 59.304 61.111 15.93 0.00 45.58 3.36
2390 3275 4.590487 GACGCGAAATGAGTCCCA 57.410 55.556 15.93 0.00 41.07 4.37
2391 3276 3.065575 GACGCGAAATGAGTCCCAT 57.934 52.632 15.93 0.00 41.07 4.00
2392 3277 0.931005 GACGCGAAATGAGTCCCATC 59.069 55.000 15.93 0.00 41.07 3.51
2393 3278 0.537188 ACGCGAAATGAGTCCCATCT 59.463 50.000 15.93 0.00 33.53 2.90
2394 3279 1.212616 CGCGAAATGAGTCCCATCTC 58.787 55.000 0.00 0.00 33.53 2.75
2395 3280 1.587547 GCGAAATGAGTCCCATCTCC 58.412 55.000 0.00 0.00 33.53 3.71
2396 3281 1.134401 GCGAAATGAGTCCCATCTCCA 60.134 52.381 0.00 0.00 33.53 3.86
2397 3282 2.680805 GCGAAATGAGTCCCATCTCCAA 60.681 50.000 0.00 0.00 33.53 3.53
2398 3283 3.609853 CGAAATGAGTCCCATCTCCAAA 58.390 45.455 0.00 0.00 33.53 3.28
2399 3284 4.202441 CGAAATGAGTCCCATCTCCAAAT 58.798 43.478 0.00 0.00 33.53 2.32
2400 3285 4.274459 CGAAATGAGTCCCATCTCCAAATC 59.726 45.833 0.00 0.00 33.53 2.17
2401 3286 5.444176 GAAATGAGTCCCATCTCCAAATCT 58.556 41.667 0.00 0.00 33.53 2.40
2402 3287 4.703379 ATGAGTCCCATCTCCAAATCTC 57.297 45.455 0.00 0.00 33.93 2.75
2403 3288 2.774234 TGAGTCCCATCTCCAAATCTCC 59.226 50.000 0.00 0.00 33.93 3.71
2404 3289 1.765314 AGTCCCATCTCCAAATCTCCG 59.235 52.381 0.00 0.00 0.00 4.63
2405 3290 0.469917 TCCCATCTCCAAATCTCCGC 59.530 55.000 0.00 0.00 0.00 5.54
2406 3291 0.536006 CCCATCTCCAAATCTCCGCC 60.536 60.000 0.00 0.00 0.00 6.13
2407 3292 0.181114 CCATCTCCAAATCTCCGCCA 59.819 55.000 0.00 0.00 0.00 5.69
2408 3293 1.408683 CCATCTCCAAATCTCCGCCAA 60.409 52.381 0.00 0.00 0.00 4.52
2409 3294 2.579873 CATCTCCAAATCTCCGCCAAT 58.420 47.619 0.00 0.00 0.00 3.16
2410 3295 2.042686 TCTCCAAATCTCCGCCAATG 57.957 50.000 0.00 0.00 0.00 2.82
2411 3296 1.559219 TCTCCAAATCTCCGCCAATGA 59.441 47.619 0.00 0.00 0.00 2.57
2412 3297 1.672881 CTCCAAATCTCCGCCAATGAC 59.327 52.381 0.00 0.00 0.00 3.06
2413 3298 1.004161 TCCAAATCTCCGCCAATGACA 59.996 47.619 0.00 0.00 0.00 3.58
2414 3299 1.133025 CCAAATCTCCGCCAATGACAC 59.867 52.381 0.00 0.00 0.00 3.67
2415 3300 1.086696 AAATCTCCGCCAATGACACG 58.913 50.000 0.00 0.00 0.00 4.49
2417 3302 1.899437 ATCTCCGCCAATGACACGGT 61.899 55.000 8.65 0.00 46.92 4.83
2418 3303 1.671054 CTCCGCCAATGACACGGTT 60.671 57.895 8.65 0.00 46.92 4.44
2419 3304 0.390603 CTCCGCCAATGACACGGTTA 60.391 55.000 8.65 0.00 46.92 2.85
2420 3305 0.035036 TCCGCCAATGACACGGTTAA 59.965 50.000 8.65 0.00 46.92 2.01
2421 3306 1.091537 CCGCCAATGACACGGTTAAT 58.908 50.000 0.00 0.00 42.01 1.40
2422 3307 1.470890 CCGCCAATGACACGGTTAATT 59.529 47.619 0.00 0.00 42.01 1.40
2423 3308 2.094957 CCGCCAATGACACGGTTAATTT 60.095 45.455 0.00 0.00 42.01 1.82
2424 3309 2.914214 CGCCAATGACACGGTTAATTTG 59.086 45.455 0.00 0.00 0.00 2.32
2425 3310 3.365465 CGCCAATGACACGGTTAATTTGA 60.365 43.478 0.00 0.00 0.00 2.69
2426 3311 4.674101 CGCCAATGACACGGTTAATTTGAT 60.674 41.667 0.00 0.00 0.00 2.57
2427 3312 4.798387 GCCAATGACACGGTTAATTTGATC 59.202 41.667 0.00 0.00 0.00 2.92
2428 3313 5.393027 GCCAATGACACGGTTAATTTGATCT 60.393 40.000 0.00 0.00 0.00 2.75
2429 3314 6.029607 CCAATGACACGGTTAATTTGATCTG 58.970 40.000 0.00 0.00 0.00 2.90
2430 3315 4.678509 TGACACGGTTAATTTGATCTGC 57.321 40.909 0.00 0.00 0.00 4.26
2431 3316 3.124466 TGACACGGTTAATTTGATCTGCG 59.876 43.478 0.00 0.00 0.00 5.18
2432 3317 3.071479 ACACGGTTAATTTGATCTGCGT 58.929 40.909 0.00 0.00 0.00 5.24
2433 3318 3.120338 ACACGGTTAATTTGATCTGCGTG 60.120 43.478 0.00 0.00 0.00 5.34
2434 3319 2.159572 ACGGTTAATTTGATCTGCGTGC 60.160 45.455 0.00 0.00 0.00 5.34
2435 3320 2.440501 GGTTAATTTGATCTGCGTGCG 58.559 47.619 0.00 0.00 0.00 5.34
2436 3321 2.159572 GGTTAATTTGATCTGCGTGCGT 60.160 45.455 0.00 0.00 0.00 5.24
2437 3322 3.062909 GGTTAATTTGATCTGCGTGCGTA 59.937 43.478 0.00 0.00 0.00 4.42
2438 3323 4.260620 GGTTAATTTGATCTGCGTGCGTAT 60.261 41.667 0.00 0.00 0.00 3.06
2439 3324 5.050634 GGTTAATTTGATCTGCGTGCGTATA 60.051 40.000 0.00 0.00 0.00 1.47
2440 3325 4.715520 AATTTGATCTGCGTGCGTATAG 57.284 40.909 0.00 0.00 0.00 1.31
2441 3326 2.134201 TTGATCTGCGTGCGTATAGG 57.866 50.000 0.00 0.00 0.00 2.57
2442 3327 1.029681 TGATCTGCGTGCGTATAGGT 58.970 50.000 0.00 0.00 0.00 3.08
2443 3328 1.001706 TGATCTGCGTGCGTATAGGTC 60.002 52.381 0.00 0.00 0.00 3.85
2444 3329 0.040336 ATCTGCGTGCGTATAGGTCG 60.040 55.000 7.43 7.43 0.00 4.79
2445 3330 1.091197 TCTGCGTGCGTATAGGTCGA 61.091 55.000 13.22 0.00 0.00 4.20
2446 3331 0.248336 CTGCGTGCGTATAGGTCGAA 60.248 55.000 13.22 5.10 0.00 3.71
2447 3332 0.248336 TGCGTGCGTATAGGTCGAAG 60.248 55.000 13.22 0.00 0.00 3.79
2448 3333 0.248377 GCGTGCGTATAGGTCGAAGT 60.248 55.000 13.22 0.00 0.00 3.01
2449 3334 1.796617 GCGTGCGTATAGGTCGAAGTT 60.797 52.381 13.22 0.00 0.00 2.66
2450 3335 2.523015 CGTGCGTATAGGTCGAAGTTT 58.477 47.619 0.00 0.00 0.00 2.66
2451 3336 2.919229 CGTGCGTATAGGTCGAAGTTTT 59.081 45.455 0.00 0.00 0.00 2.43
2452 3337 3.001365 CGTGCGTATAGGTCGAAGTTTTC 60.001 47.826 0.00 0.00 0.00 2.29
2453 3338 4.171754 GTGCGTATAGGTCGAAGTTTTCT 58.828 43.478 0.00 0.00 0.00 2.52
2454 3339 4.264849 GTGCGTATAGGTCGAAGTTTTCTC 59.735 45.833 0.00 0.00 0.00 2.87
2455 3340 3.481388 GCGTATAGGTCGAAGTTTTCTCG 59.519 47.826 0.00 0.00 0.00 4.04
2456 3341 3.481388 CGTATAGGTCGAAGTTTTCTCGC 59.519 47.826 0.00 0.00 0.00 5.03
2457 3342 3.587797 ATAGGTCGAAGTTTTCTCGCA 57.412 42.857 0.00 0.00 0.00 5.10
2458 3343 2.234300 AGGTCGAAGTTTTCTCGCAA 57.766 45.000 0.00 0.00 0.00 4.85
2459 3344 2.557317 AGGTCGAAGTTTTCTCGCAAA 58.443 42.857 0.00 0.00 0.00 3.68
2460 3345 2.940410 AGGTCGAAGTTTTCTCGCAAAA 59.060 40.909 0.00 0.00 0.00 2.44
2461 3346 3.375922 AGGTCGAAGTTTTCTCGCAAAAA 59.624 39.130 0.00 0.00 0.00 1.94
2462 3347 3.724257 GGTCGAAGTTTTCTCGCAAAAAG 59.276 43.478 0.00 0.00 0.00 2.27
2463 3348 3.724257 GTCGAAGTTTTCTCGCAAAAAGG 59.276 43.478 0.00 0.00 0.00 3.11
2464 3349 3.042887 CGAAGTTTTCTCGCAAAAAGGG 58.957 45.455 0.00 0.00 0.00 3.95
2465 3350 3.381045 GAAGTTTTCTCGCAAAAAGGGG 58.619 45.455 0.00 0.00 0.00 4.79
2466 3351 1.686587 AGTTTTCTCGCAAAAAGGGGG 59.313 47.619 0.00 0.00 0.00 5.40
2467 3352 1.411246 GTTTTCTCGCAAAAAGGGGGT 59.589 47.619 0.00 0.00 31.38 4.95
2468 3353 1.324383 TTTCTCGCAAAAAGGGGGTC 58.676 50.000 0.00 0.00 31.38 4.46
2469 3354 0.887387 TTCTCGCAAAAAGGGGGTCG 60.887 55.000 0.00 0.00 31.38 4.79
2470 3355 2.281900 TCGCAAAAAGGGGGTCGG 60.282 61.111 0.00 0.00 0.00 4.79
2471 3356 2.281900 CGCAAAAAGGGGGTCGGA 60.282 61.111 0.00 0.00 0.00 4.55
2472 3357 2.332654 CGCAAAAAGGGGGTCGGAG 61.333 63.158 0.00 0.00 0.00 4.63
2473 3358 1.228459 GCAAAAAGGGGGTCGGAGT 60.228 57.895 0.00 0.00 0.00 3.85
2474 3359 0.826256 GCAAAAAGGGGGTCGGAGTT 60.826 55.000 0.00 0.00 0.00 3.01
2475 3360 1.699730 CAAAAAGGGGGTCGGAGTTT 58.300 50.000 0.00 0.00 0.00 2.66
2476 3361 2.866351 CAAAAAGGGGGTCGGAGTTTA 58.134 47.619 0.00 0.00 0.00 2.01
2477 3362 2.817844 CAAAAAGGGGGTCGGAGTTTAG 59.182 50.000 0.00 0.00 0.00 1.85
2478 3363 1.738474 AAAGGGGGTCGGAGTTTAGT 58.262 50.000 0.00 0.00 0.00 2.24
2479 3364 1.738474 AAGGGGGTCGGAGTTTAGTT 58.262 50.000 0.00 0.00 0.00 2.24
2480 3365 1.738474 AGGGGGTCGGAGTTTAGTTT 58.262 50.000 0.00 0.00 0.00 2.66
2481 3366 1.350019 AGGGGGTCGGAGTTTAGTTTG 59.650 52.381 0.00 0.00 0.00 2.93
2482 3367 1.162698 GGGGTCGGAGTTTAGTTTGC 58.837 55.000 0.00 0.00 0.00 3.68
2483 3368 1.162698 GGGTCGGAGTTTAGTTTGCC 58.837 55.000 0.00 0.00 0.00 4.52
2484 3369 1.543871 GGGTCGGAGTTTAGTTTGCCA 60.544 52.381 0.00 0.00 0.00 4.92
2485 3370 2.223745 GGTCGGAGTTTAGTTTGCCAA 58.776 47.619 0.00 0.00 0.00 4.52
2486 3371 2.225727 GGTCGGAGTTTAGTTTGCCAAG 59.774 50.000 0.00 0.00 0.00 3.61
2487 3372 1.877443 TCGGAGTTTAGTTTGCCAAGC 59.123 47.619 0.00 0.00 0.00 4.01
2488 3373 1.399727 CGGAGTTTAGTTTGCCAAGCG 60.400 52.381 0.00 0.00 0.00 4.68
2489 3374 1.666023 GGAGTTTAGTTTGCCAAGCGC 60.666 52.381 0.00 0.00 38.31 5.92
2490 3375 0.040425 AGTTTAGTTTGCCAAGCGCG 60.040 50.000 0.00 0.00 42.08 6.86
2491 3376 0.040781 GTTTAGTTTGCCAAGCGCGA 60.041 50.000 12.10 0.00 42.08 5.87
2492 3377 0.663688 TTTAGTTTGCCAAGCGCGAA 59.336 45.000 12.10 0.00 42.08 4.70
2493 3378 0.663688 TTAGTTTGCCAAGCGCGAAA 59.336 45.000 12.10 0.00 42.69 3.46
2494 3379 0.878416 TAGTTTGCCAAGCGCGAAAT 59.122 45.000 12.10 0.00 42.69 2.17
2495 3380 0.664166 AGTTTGCCAAGCGCGAAATG 60.664 50.000 12.10 4.54 42.69 2.32
2496 3381 0.662970 GTTTGCCAAGCGCGAAATGA 60.663 50.000 12.10 0.00 42.69 2.57
2497 3382 0.031314 TTTGCCAAGCGCGAAATGAA 59.969 45.000 12.10 0.00 37.96 2.57
2498 3383 0.243365 TTGCCAAGCGCGAAATGAAT 59.757 45.000 12.10 0.00 42.08 2.57
2499 3384 0.456482 TGCCAAGCGCGAAATGAATG 60.456 50.000 12.10 0.00 42.08 2.67
2500 3385 0.179166 GCCAAGCGCGAAATGAATGA 60.179 50.000 12.10 0.00 0.00 2.57
2501 3386 1.818850 CCAAGCGCGAAATGAATGAG 58.181 50.000 12.10 0.00 0.00 2.90
2502 3387 1.398041 CCAAGCGCGAAATGAATGAGA 59.602 47.619 12.10 0.00 0.00 3.27
2503 3388 2.032550 CCAAGCGCGAAATGAATGAGAT 59.967 45.455 12.10 0.00 0.00 2.75
2504 3389 3.286576 CAAGCGCGAAATGAATGAGATC 58.713 45.455 12.10 0.00 0.00 2.75
2505 3390 2.831333 AGCGCGAAATGAATGAGATCT 58.169 42.857 12.10 0.00 0.00 2.75
2506 3391 3.201290 AGCGCGAAATGAATGAGATCTT 58.799 40.909 12.10 0.00 0.00 2.40
2507 3392 4.371786 AGCGCGAAATGAATGAGATCTTA 58.628 39.130 12.10 0.00 0.00 2.10
2508 3393 4.447054 AGCGCGAAATGAATGAGATCTTAG 59.553 41.667 12.10 0.00 0.00 2.18
2509 3394 4.696224 CGCGAAATGAATGAGATCTTAGC 58.304 43.478 0.00 0.00 0.00 3.09
2510 3395 4.447054 CGCGAAATGAATGAGATCTTAGCT 59.553 41.667 0.00 0.00 0.00 3.32
2511 3396 5.388268 CGCGAAATGAATGAGATCTTAGCTC 60.388 44.000 0.00 0.00 0.00 4.09
2512 3397 5.695816 GCGAAATGAATGAGATCTTAGCTCT 59.304 40.000 0.00 0.00 33.57 4.09
2513 3398 6.865726 GCGAAATGAATGAGATCTTAGCTCTA 59.134 38.462 0.00 0.00 33.57 2.43
2514 3399 7.383572 GCGAAATGAATGAGATCTTAGCTCTAA 59.616 37.037 0.00 0.00 33.57 2.10
2515 3400 9.254133 CGAAATGAATGAGATCTTAGCTCTAAA 57.746 33.333 0.00 0.00 33.57 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.212934 TCGAAGATAATGATCCGTTTCTCG 58.787 41.667 0.00 0.00 39.52 4.04
31 32 3.256383 TCATGGCATGACAACTTTGGAAG 59.744 43.478 25.63 0.00 33.59 3.46
95 98 6.095300 CAGCATGATGGTACTTTTTATGGTGA 59.905 38.462 2.13 0.00 42.10 4.02
148 151 3.119849 GCCCATCAAGAATACACACACAC 60.120 47.826 0.00 0.00 0.00 3.82
152 155 2.722094 TGGCCCATCAAGAATACACAC 58.278 47.619 0.00 0.00 0.00 3.82
201 204 2.079925 GTTGTTTAGCAGGAGGAGCTG 58.920 52.381 0.00 0.00 43.33 4.24
215 218 1.780919 AGCTTAGGACTGGGGTTGTTT 59.219 47.619 0.00 0.00 0.00 2.83
312 319 5.954150 AGATGTGCCAGATAAATTTGGAGTT 59.046 36.000 0.00 0.00 36.55 3.01
313 320 5.513233 AGATGTGCCAGATAAATTTGGAGT 58.487 37.500 0.00 0.00 36.55 3.85
314 321 7.664731 AGATAGATGTGCCAGATAAATTTGGAG 59.335 37.037 0.00 0.00 36.55 3.86
391 402 0.753867 GTTGAGTAGCTAGCTCCCCC 59.246 60.000 23.26 9.77 32.31 5.40
408 419 4.151883 TGGAGGAAATTAGCTTGCAAGTT 58.848 39.130 26.55 23.34 0.00 2.66
410 421 4.789012 TTGGAGGAAATTAGCTTGCAAG 57.211 40.909 22.44 22.44 0.00 4.01
437 448 1.681666 CCTGGGTGACATGTCTGCT 59.318 57.895 25.55 0.00 0.00 4.24
541 552 3.424703 TCTTTTGCCTGGGAGATTTCAG 58.575 45.455 0.00 0.00 0.00 3.02
553 564 7.989170 AGACTTCAAATGATTTTTCTTTTGCCT 59.011 29.630 8.61 3.14 35.81 4.75
554 565 8.146479 AGACTTCAAATGATTTTTCTTTTGCC 57.854 30.769 8.61 1.60 35.81 4.52
571 582 4.519213 TGGTCGGAAAAGAAAGACTTCAA 58.481 39.130 0.00 0.00 37.93 2.69
587 598 0.527565 CCATGAAGGCTTTTGGTCGG 59.472 55.000 17.50 4.07 0.00 4.79
615 626 4.688021 TGTAATTGTTTTCCCTGTGCAAC 58.312 39.130 0.00 0.00 37.35 4.17
642 653 8.223100 CCAGCTTTATTTTACAAGACATTTTGC 58.777 33.333 0.00 0.00 0.00 3.68
756 767 0.179073 CAGATGTCCATCCACGGTCC 60.179 60.000 3.70 0.00 38.58 4.46
914 932 2.092882 GGTGGTGTTAGCGAGCGAC 61.093 63.158 0.00 0.00 0.00 5.19
978 1000 2.815308 GATCGATGGCCGGAGTGT 59.185 61.111 5.05 0.00 39.14 3.55
1300 1322 2.125832 CGTGGTGGCGACGGTAAT 60.126 61.111 0.00 0.00 32.29 1.89
1301 1323 3.293714 TCGTGGTGGCGACGGTAA 61.294 61.111 0.00 0.00 36.32 2.85
1412 1437 1.890979 CTCATCAGTGGCGCCATCC 60.891 63.158 35.23 21.47 0.00 3.51
1594 1651 7.454694 ACATAATCCATGCTGGTACTGATAGTA 59.545 37.037 0.00 0.00 39.03 1.82
1595 1652 6.270927 ACATAATCCATGCTGGTACTGATAGT 59.729 38.462 0.00 0.00 39.03 2.12
1599 1656 4.164030 ACACATAATCCATGCTGGTACTGA 59.836 41.667 0.00 0.00 39.03 3.41
1654 2003 3.347216 TGCTAATTCAGAGGGCTTTGTC 58.653 45.455 0.00 0.00 0.00 3.18
1672 2021 2.363306 TGAGACCAACAAACCATGCT 57.637 45.000 0.00 0.00 0.00 3.79
1825 2691 4.379186 GCTGGAGAATGTTCAAGTGATGTG 60.379 45.833 0.00 0.00 0.00 3.21
1872 2738 9.582431 GAAGCTACTTCTATAAATGTACACACA 57.418 33.333 0.00 0.00 37.49 3.72
2140 3025 5.944007 GGGTGTTTGGTGACTAAACATCTAT 59.056 40.000 28.54 0.00 46.14 1.98
2141 3026 5.163184 TGGGTGTTTGGTGACTAAACATCTA 60.163 40.000 28.54 23.32 46.14 1.98
2142 3027 4.142038 GGGTGTTTGGTGACTAAACATCT 58.858 43.478 28.54 0.00 46.14 2.90
2145 3030 3.367646 TGGGTGTTTGGTGACTAAACA 57.632 42.857 20.93 20.93 43.50 2.83
2196 3081 3.782443 GACCTAGCCACCCCCGTG 61.782 72.222 0.00 0.00 39.91 4.94
2197 3082 3.978410 GAGACCTAGCCACCCCCGT 62.978 68.421 0.00 0.00 0.00 5.28
2198 3083 3.155167 GAGACCTAGCCACCCCCG 61.155 72.222 0.00 0.00 0.00 5.73
2199 3084 2.040606 TGAGACCTAGCCACCCCC 59.959 66.667 0.00 0.00 0.00 5.40
2200 3085 1.306226 ACTGAGACCTAGCCACCCC 60.306 63.158 0.00 0.00 0.00 4.95
2201 3086 0.614979 TGACTGAGACCTAGCCACCC 60.615 60.000 0.00 0.00 0.00 4.61
2202 3087 1.267121 TTGACTGAGACCTAGCCACC 58.733 55.000 0.00 0.00 0.00 4.61
2203 3088 3.618690 ATTTGACTGAGACCTAGCCAC 57.381 47.619 0.00 0.00 0.00 5.01
2204 3089 5.755409 TTTATTTGACTGAGACCTAGCCA 57.245 39.130 0.00 0.00 0.00 4.75
2205 3090 9.646427 CTATATTTATTTGACTGAGACCTAGCC 57.354 37.037 0.00 0.00 0.00 3.93
2267 3152 6.949578 TCCTTCGATTTTGCATGAAAAATC 57.050 33.333 30.56 30.56 46.25 2.17
2268 3153 7.910441 ATTCCTTCGATTTTGCATGAAAAAT 57.090 28.000 22.07 22.07 41.34 1.82
2269 3154 8.707839 GTTATTCCTTCGATTTTGCATGAAAAA 58.292 29.630 14.03 14.03 37.10 1.94
2270 3155 7.869937 TGTTATTCCTTCGATTTTGCATGAAAA 59.130 29.630 0.00 0.00 37.93 2.29
2271 3156 7.374272 TGTTATTCCTTCGATTTTGCATGAAA 58.626 30.769 0.00 0.00 0.00 2.69
2272 3157 6.918626 TGTTATTCCTTCGATTTTGCATGAA 58.081 32.000 0.00 0.00 0.00 2.57
2273 3158 6.507958 TGTTATTCCTTCGATTTTGCATGA 57.492 33.333 0.00 0.00 0.00 3.07
2274 3159 7.166970 CAGATGTTATTCCTTCGATTTTGCATG 59.833 37.037 0.00 0.00 0.00 4.06
2275 3160 7.067372 TCAGATGTTATTCCTTCGATTTTGCAT 59.933 33.333 0.00 0.00 0.00 3.96
2276 3161 6.374053 TCAGATGTTATTCCTTCGATTTTGCA 59.626 34.615 0.00 0.00 0.00 4.08
2277 3162 6.785191 TCAGATGTTATTCCTTCGATTTTGC 58.215 36.000 0.00 0.00 0.00 3.68
2278 3163 8.119226 GTCTCAGATGTTATTCCTTCGATTTTG 58.881 37.037 0.00 0.00 0.00 2.44
2279 3164 8.043710 AGTCTCAGATGTTATTCCTTCGATTTT 58.956 33.333 0.00 0.00 0.00 1.82
2280 3165 7.560368 AGTCTCAGATGTTATTCCTTCGATTT 58.440 34.615 0.00 0.00 0.00 2.17
2281 3166 7.118496 AGTCTCAGATGTTATTCCTTCGATT 57.882 36.000 0.00 0.00 0.00 3.34
2282 3167 6.723298 AGTCTCAGATGTTATTCCTTCGAT 57.277 37.500 0.00 0.00 0.00 3.59
2283 3168 6.531503 AAGTCTCAGATGTTATTCCTTCGA 57.468 37.500 0.00 0.00 0.00 3.71
2284 3169 6.920758 CCTAAGTCTCAGATGTTATTCCTTCG 59.079 42.308 0.00 0.00 0.00 3.79
2285 3170 8.012957 TCCTAAGTCTCAGATGTTATTCCTTC 57.987 38.462 0.00 0.00 0.00 3.46
2286 3171 7.979786 TCCTAAGTCTCAGATGTTATTCCTT 57.020 36.000 0.00 0.00 0.00 3.36
2287 3172 7.979786 TTCCTAAGTCTCAGATGTTATTCCT 57.020 36.000 0.00 0.00 0.00 3.36
2288 3173 8.884726 GTTTTCCTAAGTCTCAGATGTTATTCC 58.115 37.037 0.00 0.00 0.00 3.01
2289 3174 9.660180 AGTTTTCCTAAGTCTCAGATGTTATTC 57.340 33.333 0.00 0.00 0.00 1.75
2290 3175 9.442047 CAGTTTTCCTAAGTCTCAGATGTTATT 57.558 33.333 0.00 0.00 0.00 1.40
2291 3176 8.598041 ACAGTTTTCCTAAGTCTCAGATGTTAT 58.402 33.333 0.00 0.00 0.00 1.89
2292 3177 7.963532 ACAGTTTTCCTAAGTCTCAGATGTTA 58.036 34.615 0.00 0.00 0.00 2.41
2293 3178 6.831976 ACAGTTTTCCTAAGTCTCAGATGTT 58.168 36.000 0.00 0.00 0.00 2.71
2294 3179 6.426646 ACAGTTTTCCTAAGTCTCAGATGT 57.573 37.500 0.00 0.00 0.00 3.06
2295 3180 6.090088 CGAACAGTTTTCCTAAGTCTCAGATG 59.910 42.308 0.00 0.00 0.00 2.90
2296 3181 6.159988 CGAACAGTTTTCCTAAGTCTCAGAT 58.840 40.000 0.00 0.00 0.00 2.90
2297 3182 5.529791 CGAACAGTTTTCCTAAGTCTCAGA 58.470 41.667 0.00 0.00 0.00 3.27
2298 3183 4.150804 GCGAACAGTTTTCCTAAGTCTCAG 59.849 45.833 0.00 0.00 0.00 3.35
2299 3184 4.056050 GCGAACAGTTTTCCTAAGTCTCA 58.944 43.478 0.00 0.00 0.00 3.27
2300 3185 3.432592 GGCGAACAGTTTTCCTAAGTCTC 59.567 47.826 0.00 0.00 0.00 3.36
2301 3186 3.071167 AGGCGAACAGTTTTCCTAAGTCT 59.929 43.478 5.69 0.00 0.00 3.24
2302 3187 3.400255 AGGCGAACAGTTTTCCTAAGTC 58.600 45.455 5.69 0.00 0.00 3.01
2303 3188 3.487120 AGGCGAACAGTTTTCCTAAGT 57.513 42.857 5.69 0.00 0.00 2.24
2304 3189 5.934935 TTAAGGCGAACAGTTTTCCTAAG 57.065 39.130 7.48 0.00 0.00 2.18
2305 3190 5.998981 TGATTAAGGCGAACAGTTTTCCTAA 59.001 36.000 7.48 4.50 0.00 2.69
2306 3191 5.410439 GTGATTAAGGCGAACAGTTTTCCTA 59.590 40.000 7.48 0.00 0.00 2.94
2307 3192 4.215613 GTGATTAAGGCGAACAGTTTTCCT 59.784 41.667 2.34 2.34 0.00 3.36
2308 3193 4.473199 GTGATTAAGGCGAACAGTTTTCC 58.527 43.478 0.00 0.00 0.00 3.13
2309 3194 4.215613 AGGTGATTAAGGCGAACAGTTTTC 59.784 41.667 0.00 0.00 0.00 2.29
2310 3195 4.142038 AGGTGATTAAGGCGAACAGTTTT 58.858 39.130 0.00 0.00 0.00 2.43
2311 3196 3.751518 AGGTGATTAAGGCGAACAGTTT 58.248 40.909 0.00 0.00 0.00 2.66
2312 3197 3.418684 AGGTGATTAAGGCGAACAGTT 57.581 42.857 0.00 0.00 0.00 3.16
2313 3198 4.251268 GTTAGGTGATTAAGGCGAACAGT 58.749 43.478 0.00 0.00 0.00 3.55
2314 3199 4.250464 TGTTAGGTGATTAAGGCGAACAG 58.750 43.478 0.00 0.00 0.00 3.16
2315 3200 4.274602 TGTTAGGTGATTAAGGCGAACA 57.725 40.909 0.00 0.00 0.00 3.18
2316 3201 6.929606 AGATATGTTAGGTGATTAAGGCGAAC 59.070 38.462 0.00 0.00 0.00 3.95
2317 3202 7.062749 AGATATGTTAGGTGATTAAGGCGAA 57.937 36.000 0.00 0.00 0.00 4.70
2318 3203 6.665992 AGATATGTTAGGTGATTAAGGCGA 57.334 37.500 0.00 0.00 0.00 5.54
2319 3204 7.730364 AAAGATATGTTAGGTGATTAAGGCG 57.270 36.000 0.00 0.00 0.00 5.52
2320 3205 8.283291 CGAAAAGATATGTTAGGTGATTAAGGC 58.717 37.037 0.00 0.00 0.00 4.35
2321 3206 8.774586 CCGAAAAGATATGTTAGGTGATTAAGG 58.225 37.037 0.00 0.00 0.00 2.69
2322 3207 9.326413 ACCGAAAAGATATGTTAGGTGATTAAG 57.674 33.333 0.00 0.00 0.00 1.85
2323 3208 9.321562 GACCGAAAAGATATGTTAGGTGATTAA 57.678 33.333 0.00 0.00 0.00 1.40
2324 3209 8.701895 AGACCGAAAAGATATGTTAGGTGATTA 58.298 33.333 0.00 0.00 0.00 1.75
2325 3210 7.565680 AGACCGAAAAGATATGTTAGGTGATT 58.434 34.615 0.00 0.00 0.00 2.57
2326 3211 7.125792 AGACCGAAAAGATATGTTAGGTGAT 57.874 36.000 0.00 0.00 0.00 3.06
2327 3212 6.540438 AGACCGAAAAGATATGTTAGGTGA 57.460 37.500 0.00 0.00 0.00 4.02
2328 3213 5.459107 CGAGACCGAAAAGATATGTTAGGTG 59.541 44.000 0.00 0.00 38.22 4.00
2329 3214 5.589192 CGAGACCGAAAAGATATGTTAGGT 58.411 41.667 0.00 0.00 38.22 3.08
2330 3215 4.444720 GCGAGACCGAAAAGATATGTTAGG 59.555 45.833 0.00 0.00 38.22 2.69
2331 3216 4.444720 GGCGAGACCGAAAAGATATGTTAG 59.555 45.833 0.00 0.00 38.22 2.34
2332 3217 4.365723 GGCGAGACCGAAAAGATATGTTA 58.634 43.478 0.00 0.00 38.22 2.41
2333 3218 3.195661 GGCGAGACCGAAAAGATATGTT 58.804 45.455 0.00 0.00 38.22 2.71
2334 3219 2.822764 GGCGAGACCGAAAAGATATGT 58.177 47.619 0.00 0.00 38.22 2.29
2346 3231 0.734942 TGATCGAAAACGGCGAGACC 60.735 55.000 16.62 0.00 41.49 3.85
2347 3232 0.640768 CTGATCGAAAACGGCGAGAC 59.359 55.000 16.62 0.69 41.49 3.36
2348 3233 0.457853 CCTGATCGAAAACGGCGAGA 60.458 55.000 16.62 5.04 41.49 4.04
2349 3234 1.999051 CCTGATCGAAAACGGCGAG 59.001 57.895 16.62 0.00 41.49 5.03
2350 3235 2.098233 GCCTGATCGAAAACGGCGA 61.098 57.895 16.62 0.00 42.48 5.54
2351 3236 2.399611 GCCTGATCGAAAACGGCG 59.600 61.111 4.80 4.80 0.00 6.46
2352 3237 2.399611 CGCCTGATCGAAAACGGC 59.600 61.111 7.95 7.95 37.40 5.68
2353 3238 3.089784 CCGCCTGATCGAAAACGG 58.910 61.111 0.00 0.00 0.00 4.44
2354 3239 2.399611 GCCGCCTGATCGAAAACG 59.600 61.111 0.00 0.00 0.00 3.60
2355 3240 2.399611 CGCCGCCTGATCGAAAAC 59.600 61.111 0.00 0.00 0.00 2.43
2356 3241 2.817834 CCGCCGCCTGATCGAAAA 60.818 61.111 0.00 0.00 0.00 2.29
2357 3242 3.765578 TCCGCCGCCTGATCGAAA 61.766 61.111 0.00 0.00 0.00 3.46
2358 3243 4.508128 GTCCGCCGCCTGATCGAA 62.508 66.667 0.00 0.00 0.00 3.71
2368 3253 3.913573 CTCATTTCGCGTCCGCCG 61.914 66.667 5.77 1.85 37.98 6.46
2369 3254 2.799540 GACTCATTTCGCGTCCGCC 61.800 63.158 5.77 0.00 37.98 6.13
2370 3255 2.695646 GACTCATTTCGCGTCCGC 59.304 61.111 5.77 0.68 37.85 5.54
2371 3256 3.384927 GGACTCATTTCGCGTCCG 58.615 61.111 5.77 0.00 39.64 4.79
2373 3258 0.931005 GATGGGACTCATTTCGCGTC 59.069 55.000 5.77 0.00 37.32 5.19
2374 3259 0.537188 AGATGGGACTCATTTCGCGT 59.463 50.000 5.77 0.00 35.97 6.01
2375 3260 1.212616 GAGATGGGACTCATTTCGCG 58.787 55.000 0.00 0.00 35.97 5.87
2376 3261 1.134401 TGGAGATGGGACTCATTTCGC 60.134 52.381 0.04 0.00 37.73 4.70
2377 3262 2.988010 TGGAGATGGGACTCATTTCG 57.012 50.000 0.04 0.00 37.73 3.46
2378 3263 5.444176 AGATTTGGAGATGGGACTCATTTC 58.556 41.667 0.00 0.00 38.51 2.17
2379 3264 5.444176 GAGATTTGGAGATGGGACTCATTT 58.556 41.667 0.00 0.00 38.51 2.32
2380 3265 4.141298 GGAGATTTGGAGATGGGACTCATT 60.141 45.833 0.00 0.00 38.51 2.57
2381 3266 3.393941 GGAGATTTGGAGATGGGACTCAT 59.606 47.826 0.00 0.00 38.51 2.90
2382 3267 2.774234 GGAGATTTGGAGATGGGACTCA 59.226 50.000 0.00 0.00 38.51 3.41
2383 3268 2.224161 CGGAGATTTGGAGATGGGACTC 60.224 54.545 0.00 0.00 36.31 3.36
2384 3269 1.765314 CGGAGATTTGGAGATGGGACT 59.235 52.381 0.00 0.00 0.00 3.85
2385 3270 1.811941 GCGGAGATTTGGAGATGGGAC 60.812 57.143 0.00 0.00 0.00 4.46
2386 3271 0.469917 GCGGAGATTTGGAGATGGGA 59.530 55.000 0.00 0.00 0.00 4.37
2387 3272 0.536006 GGCGGAGATTTGGAGATGGG 60.536 60.000 0.00 0.00 0.00 4.00
2388 3273 0.181114 TGGCGGAGATTTGGAGATGG 59.819 55.000 0.00 0.00 0.00 3.51
2389 3274 2.042686 TTGGCGGAGATTTGGAGATG 57.957 50.000 0.00 0.00 0.00 2.90
2390 3275 2.173356 TCATTGGCGGAGATTTGGAGAT 59.827 45.455 0.00 0.00 0.00 2.75
2391 3276 1.559219 TCATTGGCGGAGATTTGGAGA 59.441 47.619 0.00 0.00 0.00 3.71
2392 3277 1.672881 GTCATTGGCGGAGATTTGGAG 59.327 52.381 0.00 0.00 0.00 3.86
2393 3278 1.004161 TGTCATTGGCGGAGATTTGGA 59.996 47.619 0.00 0.00 0.00 3.53
2394 3279 1.133025 GTGTCATTGGCGGAGATTTGG 59.867 52.381 0.00 0.00 0.00 3.28
2395 3280 1.202065 CGTGTCATTGGCGGAGATTTG 60.202 52.381 0.00 0.00 0.00 2.32
2396 3281 1.086696 CGTGTCATTGGCGGAGATTT 58.913 50.000 0.00 0.00 0.00 2.17
2397 3282 2.767536 CGTGTCATTGGCGGAGATT 58.232 52.632 0.00 0.00 0.00 2.40
2398 3283 4.521075 CGTGTCATTGGCGGAGAT 57.479 55.556 0.00 0.00 0.00 2.75
2403 3288 2.911819 AATTAACCGTGTCATTGGCG 57.088 45.000 0.00 0.00 0.00 5.69
2404 3289 4.167554 TCAAATTAACCGTGTCATTGGC 57.832 40.909 0.00 0.00 0.00 4.52
2405 3290 6.029607 CAGATCAAATTAACCGTGTCATTGG 58.970 40.000 0.00 0.00 0.00 3.16
2406 3291 5.512788 GCAGATCAAATTAACCGTGTCATTG 59.487 40.000 0.00 0.00 0.00 2.82
2407 3292 5.640732 GCAGATCAAATTAACCGTGTCATT 58.359 37.500 0.00 0.00 0.00 2.57
2408 3293 4.201812 CGCAGATCAAATTAACCGTGTCAT 60.202 41.667 0.00 0.00 0.00 3.06
2409 3294 3.124466 CGCAGATCAAATTAACCGTGTCA 59.876 43.478 0.00 0.00 0.00 3.58
2410 3295 3.124636 ACGCAGATCAAATTAACCGTGTC 59.875 43.478 0.00 0.00 0.00 3.67
2411 3296 3.071479 ACGCAGATCAAATTAACCGTGT 58.929 40.909 0.00 0.00 0.00 4.49
2412 3297 3.416277 CACGCAGATCAAATTAACCGTG 58.584 45.455 0.00 0.00 38.76 4.94
2413 3298 2.159572 GCACGCAGATCAAATTAACCGT 60.160 45.455 0.00 0.00 0.00 4.83
2414 3299 2.440501 GCACGCAGATCAAATTAACCG 58.559 47.619 0.00 0.00 0.00 4.44
2415 3300 2.159572 ACGCACGCAGATCAAATTAACC 60.160 45.455 0.00 0.00 0.00 2.85
2416 3301 3.117434 ACGCACGCAGATCAAATTAAC 57.883 42.857 0.00 0.00 0.00 2.01
2417 3302 5.176774 CCTATACGCACGCAGATCAAATTAA 59.823 40.000 0.00 0.00 0.00 1.40
2418 3303 4.684242 CCTATACGCACGCAGATCAAATTA 59.316 41.667 0.00 0.00 0.00 1.40
2419 3304 3.494626 CCTATACGCACGCAGATCAAATT 59.505 43.478 0.00 0.00 0.00 1.82
2420 3305 3.059884 CCTATACGCACGCAGATCAAAT 58.940 45.455 0.00 0.00 0.00 2.32
2421 3306 2.159156 ACCTATACGCACGCAGATCAAA 60.159 45.455 0.00 0.00 0.00 2.69
2422 3307 1.407618 ACCTATACGCACGCAGATCAA 59.592 47.619 0.00 0.00 0.00 2.57
2423 3308 1.001706 GACCTATACGCACGCAGATCA 60.002 52.381 0.00 0.00 0.00 2.92
2424 3309 1.687628 GACCTATACGCACGCAGATC 58.312 55.000 0.00 0.00 0.00 2.75
2425 3310 0.040336 CGACCTATACGCACGCAGAT 60.040 55.000 0.00 0.00 0.00 2.90
2426 3311 1.091197 TCGACCTATACGCACGCAGA 61.091 55.000 0.00 0.00 0.00 4.26
2427 3312 0.248336 TTCGACCTATACGCACGCAG 60.248 55.000 0.00 0.00 0.00 5.18
2428 3313 0.248336 CTTCGACCTATACGCACGCA 60.248 55.000 0.00 0.00 0.00 5.24
2429 3314 0.248377 ACTTCGACCTATACGCACGC 60.248 55.000 0.00 0.00 0.00 5.34
2430 3315 2.184385 AACTTCGACCTATACGCACG 57.816 50.000 0.00 0.00 0.00 5.34
2431 3316 4.171754 AGAAAACTTCGACCTATACGCAC 58.828 43.478 0.00 0.00 34.02 5.34
2432 3317 4.418392 GAGAAAACTTCGACCTATACGCA 58.582 43.478 0.00 0.00 34.02 5.24
2433 3318 3.481388 CGAGAAAACTTCGACCTATACGC 59.519 47.826 0.00 0.00 40.36 4.42
2434 3319 3.481388 GCGAGAAAACTTCGACCTATACG 59.519 47.826 0.00 0.00 40.36 3.06
2435 3320 4.418392 TGCGAGAAAACTTCGACCTATAC 58.582 43.478 0.00 0.00 40.36 1.47
2436 3321 4.707030 TGCGAGAAAACTTCGACCTATA 57.293 40.909 0.00 0.00 40.36 1.31
2437 3322 3.587797 TGCGAGAAAACTTCGACCTAT 57.412 42.857 0.00 0.00 40.36 2.57
2438 3323 3.374220 TTGCGAGAAAACTTCGACCTA 57.626 42.857 0.00 0.00 40.36 3.08
2439 3324 2.234300 TTGCGAGAAAACTTCGACCT 57.766 45.000 0.00 0.00 40.36 3.85
2440 3325 3.328237 TTTTGCGAGAAAACTTCGACC 57.672 42.857 0.00 0.00 40.36 4.79
2441 3326 3.724257 CCTTTTTGCGAGAAAACTTCGAC 59.276 43.478 0.00 0.00 40.36 4.20
2442 3327 3.242936 CCCTTTTTGCGAGAAAACTTCGA 60.243 43.478 0.00 0.00 40.36 3.71
2443 3328 3.042887 CCCTTTTTGCGAGAAAACTTCG 58.957 45.455 0.00 0.00 40.85 3.79
2444 3329 3.381045 CCCCTTTTTGCGAGAAAACTTC 58.619 45.455 0.00 0.00 0.00 3.01
2445 3330 2.102420 CCCCCTTTTTGCGAGAAAACTT 59.898 45.455 0.00 0.00 0.00 2.66
2446 3331 1.686587 CCCCCTTTTTGCGAGAAAACT 59.313 47.619 0.00 0.00 0.00 2.66
2447 3332 1.411246 ACCCCCTTTTTGCGAGAAAAC 59.589 47.619 0.00 0.00 0.00 2.43
2448 3333 1.684450 GACCCCCTTTTTGCGAGAAAA 59.316 47.619 0.00 0.00 0.00 2.29
2449 3334 1.324383 GACCCCCTTTTTGCGAGAAA 58.676 50.000 0.00 0.00 0.00 2.52
2450 3335 0.887387 CGACCCCCTTTTTGCGAGAA 60.887 55.000 0.00 0.00 0.00 2.87
2451 3336 1.302192 CGACCCCCTTTTTGCGAGA 60.302 57.895 0.00 0.00 0.00 4.04
2452 3337 2.332654 CCGACCCCCTTTTTGCGAG 61.333 63.158 0.00 0.00 0.00 5.03
2453 3338 2.281900 CCGACCCCCTTTTTGCGA 60.282 61.111 0.00 0.00 0.00 5.10
2454 3339 2.281900 TCCGACCCCCTTTTTGCG 60.282 61.111 0.00 0.00 0.00 4.85
2455 3340 0.826256 AACTCCGACCCCCTTTTTGC 60.826 55.000 0.00 0.00 0.00 3.68
2456 3341 1.699730 AAACTCCGACCCCCTTTTTG 58.300 50.000 0.00 0.00 0.00 2.44
2457 3342 2.444388 ACTAAACTCCGACCCCCTTTTT 59.556 45.455 0.00 0.00 0.00 1.94
2458 3343 2.060275 ACTAAACTCCGACCCCCTTTT 58.940 47.619 0.00 0.00 0.00 2.27
2459 3344 1.738474 ACTAAACTCCGACCCCCTTT 58.262 50.000 0.00 0.00 0.00 3.11
2460 3345 1.738474 AACTAAACTCCGACCCCCTT 58.262 50.000 0.00 0.00 0.00 3.95
2461 3346 1.350019 CAAACTAAACTCCGACCCCCT 59.650 52.381 0.00 0.00 0.00 4.79
2462 3347 1.817357 CAAACTAAACTCCGACCCCC 58.183 55.000 0.00 0.00 0.00 5.40
2463 3348 1.162698 GCAAACTAAACTCCGACCCC 58.837 55.000 0.00 0.00 0.00 4.95
2464 3349 1.162698 GGCAAACTAAACTCCGACCC 58.837 55.000 0.00 0.00 0.00 4.46
2465 3350 1.886886 TGGCAAACTAAACTCCGACC 58.113 50.000 0.00 0.00 0.00 4.79
2466 3351 2.350484 GCTTGGCAAACTAAACTCCGAC 60.350 50.000 0.00 0.00 0.00 4.79
2467 3352 1.877443 GCTTGGCAAACTAAACTCCGA 59.123 47.619 0.00 0.00 0.00 4.55
2468 3353 1.399727 CGCTTGGCAAACTAAACTCCG 60.400 52.381 0.00 0.00 0.00 4.63
2469 3354 1.666023 GCGCTTGGCAAACTAAACTCC 60.666 52.381 0.00 0.00 42.87 3.85
2470 3355 1.686464 GCGCTTGGCAAACTAAACTC 58.314 50.000 0.00 0.00 42.87 3.01
2471 3356 0.040425 CGCGCTTGGCAAACTAAACT 60.040 50.000 5.56 0.00 43.84 2.66
2472 3357 0.040781 TCGCGCTTGGCAAACTAAAC 60.041 50.000 5.56 0.00 43.84 2.01
2473 3358 0.663688 TTCGCGCTTGGCAAACTAAA 59.336 45.000 5.56 0.00 43.84 1.85
2474 3359 0.663688 TTTCGCGCTTGGCAAACTAA 59.336 45.000 5.56 0.00 43.84 2.24
2475 3360 0.878416 ATTTCGCGCTTGGCAAACTA 59.122 45.000 5.56 0.00 43.84 2.24
2476 3361 0.664166 CATTTCGCGCTTGGCAAACT 60.664 50.000 5.56 0.00 43.84 2.66
2477 3362 0.662970 TCATTTCGCGCTTGGCAAAC 60.663 50.000 5.56 0.00 43.84 2.93
2478 3363 0.031314 TTCATTTCGCGCTTGGCAAA 59.969 45.000 5.56 0.00 43.84 3.68
2479 3364 0.243365 ATTCATTTCGCGCTTGGCAA 59.757 45.000 5.56 0.00 43.84 4.52
2480 3365 0.456482 CATTCATTTCGCGCTTGGCA 60.456 50.000 5.56 0.00 43.84 4.92
2481 3366 0.179166 TCATTCATTTCGCGCTTGGC 60.179 50.000 5.56 0.00 38.69 4.52
2482 3367 1.398041 TCTCATTCATTTCGCGCTTGG 59.602 47.619 5.56 0.00 0.00 3.61
2483 3368 2.811902 TCTCATTCATTTCGCGCTTG 57.188 45.000 5.56 0.00 0.00 4.01
2484 3369 3.201290 AGATCTCATTCATTTCGCGCTT 58.799 40.909 5.56 0.00 0.00 4.68
2485 3370 2.831333 AGATCTCATTCATTTCGCGCT 58.169 42.857 5.56 0.00 0.00 5.92
2486 3371 3.599046 AAGATCTCATTCATTTCGCGC 57.401 42.857 0.00 0.00 0.00 6.86
2487 3372 4.447054 AGCTAAGATCTCATTCATTTCGCG 59.553 41.667 0.00 0.00 0.00 5.87
2488 3373 5.695816 AGAGCTAAGATCTCATTCATTTCGC 59.304 40.000 0.00 0.00 33.15 4.70
2489 3374 8.809159 TTAGAGCTAAGATCTCATTCATTTCG 57.191 34.615 0.00 0.00 33.15 3.46
2491 3376 9.054922 GCTTTAGAGCTAAGATCTCATTCATTT 57.945 33.333 0.00 0.00 45.65 2.32
2492 3377 8.606040 GCTTTAGAGCTAAGATCTCATTCATT 57.394 34.615 0.00 0.00 45.65 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.