AutoCloner

Multiple sequence alignment - TraesCS5A01G360500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G360500	chr5A	100.000	3174	0	0	1	3174	562030833	562034006	0.000000e+00	5862.0
1	TraesCS5A01G360500	chr5A	87.425	167	21	0	2993	3159	685783652	685783486	3.230000e-45	193.0
2	TraesCS5A01G360500	chr5A	90.476	63	6	0	2600	2662	552870980	552870918	2.030000e-12	84.2
3	TraesCS5A01G360500	chr3D	96.822	2077	56	7	2	2077	28638343	28636276	0.000000e+00	3461.0
4	TraesCS5A01G360500	chr3D	93.375	1117	36	10	2071	3174	28634578	28633487	0.000000e+00	1618.0
5	TraesCS5A01G360500	chr3D	78.591	724	99	26	1623	2315	408328013	408327315	8.140000e-116	427.0
6	TraesCS5A01G360500	chr3D	92.063	63	5	0	2600	2662	439085820	439085758	4.360000e-14	89.8
7	TraesCS5A01G360500	chr3B	93.740	1821	78	11	1358	3174	147416872	147418660	0.000000e+00	2699.0
8	TraesCS5A01G360500	chr3B	96.032	1361	44	2	2	1362	147405316	147406666	0.000000e+00	2206.0
9	TraesCS5A01G360500	chr3B	78.011	714	108	22	1623	2315	51736884	51737569	1.370000e-108	403.0
10	TraesCS5A01G360500	chr3B	87.640	178	21	1	1591	1767	431130657	431130480	4.150000e-49	206.0
11	TraesCS5A01G360500	chr2A	86.667	420	34	7	2286	2684	520980873	520981291	2.250000e-121	446.0
12	TraesCS5A01G360500	chr2A	88.716	257	28	1	2901	3156	520981602	520981858	2.380000e-81	313.0
13	TraesCS5A01G360500	chr2A	82.824	262	30	6	1962	2210	520980403	520980662	1.480000e-53	220.0
14	TraesCS5A01G360500	chr2A	84.746	118	14	4	2422	2538	11004275	11004161	7.190000e-22	115.0
15	TraesCS5A01G360500	chr2A	90.476	63	6	0	2600	2662	38775108	38775046	2.030000e-12	84.2
16	TraesCS5A01G360500	chr1D	86.635	419	34	8	2286	2684	223413309	223413725	8.080000e-121	444.0
17	TraesCS5A01G360500	chr1D	83.367	493	39	10	2699	3156	223413805	223414289	1.760000e-112	416.0
18	TraesCS5A01G360500	chr1D	82.824	262	30	5	1962	2210	223412889	223413148	1.480000e-53	220.0
19	TraesCS5A01G360500	chr5B	86.396	419	32	8	2286	2684	668277445	668277858	4.860000e-118	435.0
20	TraesCS5A01G360500	chr5B	77.778	720	110	23	1617	2315	44994087	44994777	6.380000e-107	398.0
21	TraesCS5A01G360500	chr5B	82.824	262	30	10	1962	2210	668277025	668277284	1.480000e-53	220.0
22	TraesCS5A01G360500	chr5B	87.363	182	22	1	1588	1768	44982057	44982238	1.150000e-49	207.0
23	TraesCS5A01G360500	chr5B	87.363	182	22	1	1588	1768	44993902	44994083	1.150000e-49	207.0
24	TraesCS5A01G360500	chr5B	82.946	129	18	2	2901	3029	668278169	668278293	2.590000e-21	113.0
25	TraesCS5A01G360500	chr6A	85.545	422	40	6	2286	2687	27627036	27626616	3.790000e-114	422.0
26	TraesCS5A01G360500	chr6A	81.181	542	69	12	1623	2147	14166138	14165613	3.810000e-109	405.0
27	TraesCS5A01G360500	chr6A	78.008	723	104	25	1624	2315	548602517	548601819	1.370000e-108	403.0
28	TraesCS5A01G360500	chr6A	89.370	254	26	1	2904	3156	27626305	27626052	5.110000e-83	318.0
29	TraesCS5A01G360500	chr2D	78.059	711	109	29	1623	2315	453865495	453864814	3.810000e-109	405.0
30	TraesCS5A01G360500	chr2D	84.916	179	26	1	1591	1768	453865683	453865505	2.520000e-41	180.0
31	TraesCS5A01G360500	chr3A	77.700	713	110	25	1624	2315	737904609	737903925	1.070000e-104	390.0
32	TraesCS5A01G360500	chr3A	87.640	178	21	1	1591	1767	737904798	737904621	4.150000e-49	206.0
33	TraesCS5A01G360500	chr5D	89.879	247	17	1	4	250	437940524	437940286	8.550000e-81	311.0
34	TraesCS5A01G360500	chr5D	81.522	368	42	14	2356	2700	549571355	549571719	2.410000e-71	279.0
35	TraesCS5A01G360500	chr5D	77.926	376	55	15	2334	2687	214193656	214193287	3.210000e-50	209.0
36	TraesCS5A01G360500	chr5D	90.278	144	10	2	743	882	87394282	87394425	5.410000e-43	185.0
37	TraesCS5A01G360500	chr5D	85.393	178	23	3	2983	3159	480828463	480828638	6.990000e-42	182.0
38	TraesCS5A01G360500	chr2B	81.250	304	53	4	1192	1494	141992354	141992654	3.160000e-60	243.0
39	TraesCS5A01G360500	chr6B	78.780	410	50	22	2318	2700	708993643	708993244	1.140000e-59	241.0
40	TraesCS5A01G360500	chr6B	87.571	177	21	1	1591	1766	463392206	463392030	1.490000e-48	204.0
41	TraesCS5A01G360500	chr7D	86.441	177	22	2	2983	3159	113760620	113760794	3.230000e-45	193.0
42	TraesCS5A01G360500	chr7D	84.431	167	26	0	2993	3159	15893084	15892918	7.040000e-37	165.0
43	TraesCS5A01G360500	chr1A	84.270	178	27	1	1591	1767	115525618	115525441	4.210000e-39	172.0
44	TraesCS5A01G360500	chr1A	84.545	110	14	3	2591	2698	589162643	589162751	4.330000e-19	106.0
45	TraesCS5A01G360500	chr6D	76.628	261	56	4	1234	1493	386646490	386646746	4.270000e-29	139.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G360500	chr5A	562030833	562034006	3173	False	5862.000000	5862	100.000000	1	3174	1	chr5A.!!$F1	3173
1	TraesCS5A01G360500	chr3D	28633487	28638343	4856	True	2539.500000	3461	95.098500	2	3174	2	chr3D.!!$R3	3172
2	TraesCS5A01G360500	chr3D	408327315	408328013	698	True	427.000000	427	78.591000	1623	2315	1	chr3D.!!$R1	692
3	TraesCS5A01G360500	chr3B	147416872	147418660	1788	False	2699.000000	2699	93.740000	1358	3174	1	chr3B.!!$F3	1816
4	TraesCS5A01G360500	chr3B	147405316	147406666	1350	False	2206.000000	2206	96.032000	2	1362	1	chr3B.!!$F2	1360
5	TraesCS5A01G360500	chr3B	51736884	51737569	685	False	403.000000	403	78.011000	1623	2315	1	chr3B.!!$F1	692
6	TraesCS5A01G360500	chr2A	520980403	520981858	1455	False	326.333333	446	86.069000	1962	3156	3	chr2A.!!$F1	1194
7	TraesCS5A01G360500	chr1D	223412889	223414289	1400	False	360.000000	444	84.275333	1962	3156	3	chr1D.!!$F1	1194
8	TraesCS5A01G360500	chr5B	44993902	44994777	875	False	302.500000	398	82.570500	1588	2315	2	chr5B.!!$F2	727
9	TraesCS5A01G360500	chr5B	668277025	668278293	1268	False	256.000000	435	84.055333	1962	3029	3	chr5B.!!$F3	1067
10	TraesCS5A01G360500	chr6A	14165613	14166138	525	True	405.000000	405	81.181000	1623	2147	1	chr6A.!!$R1	524
11	TraesCS5A01G360500	chr6A	548601819	548602517	698	True	403.000000	403	78.008000	1624	2315	1	chr6A.!!$R2	691
12	TraesCS5A01G360500	chr6A	27626052	27627036	984	True	370.000000	422	87.457500	2286	3156	2	chr6A.!!$R3	870
13	TraesCS5A01G360500	chr2D	453864814	453865683	869	True	292.500000	405	81.487500	1591	2315	2	chr2D.!!$R1	724
14	TraesCS5A01G360500	chr3A	737903925	737904798	873	True	298.000000	390	82.670000	1591	2315	2	chr3A.!!$R1	724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
998	1000	0.250684	TGCAAATCTCCGCCTTCACA	60.251	50.0	0.0	0.0	0.0	3.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2846	5037	0.811281	GGTTCTGCAGCATGGTAACC	59.189	55.0	14.78	14.78	35.86	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	59	5.801350	TGCTATTCTGCATTAACACTCAC	57.199	39.130	0.00	0.00	38.12	3.51
90	91	9.241919	TGCTGTTTCAGATTTCCAATTATTAGA	57.758	29.630	0.66	0.00	32.44	2.10
301	302	6.484643	GCTTGATTCTATGTCCAATGCTAGAA	59.515	38.462	0.00	0.00	35.37	2.10
302	303	7.012704	GCTTGATTCTATGTCCAATGCTAGAAA	59.987	37.037	0.00	0.00	34.77	2.52
343	344	9.238368	CTTATTACTGGGGAACAACTAATTTGA	57.762	33.333	0.00	0.00	38.73	2.69
438	439	6.744537	CACAGAAATGCAATCTTAGTAGCAAC	59.255	38.462	2.82	0.00	40.76	4.17
479	480	0.955428	TTAGTGCTCGGGCTTGCTTG	60.955	55.000	9.62	0.00	39.59	4.01
599	600	6.294342	GGCGTAACCACTTAGAAAAGGAAATT	60.294	38.462	0.00	0.00	37.01	1.82
758	760	0.383231	GCCATGATTAGCAGCACCAC	59.617	55.000	0.00	0.00	0.00	4.16
998	1000	0.250684	TGCAAATCTCCGCCTTCACA	60.251	50.000	0.00	0.00	0.00	3.58
1107	1109	3.077556	GGCCAGAGGAAGAGCCGA	61.078	66.667	0.00	0.00	43.43	5.54
1338	1340	2.319707	CGCGCGTGCATCGTAAAT	59.680	55.556	24.19	0.00	42.97	1.40
1395	1397	2.294078	CCCAAGGAGGAAGCGGAGT	61.294	63.158	0.00	0.00	41.22	3.85
1425	1427	3.430507	GTCCGTTCGACGTTCGTC	58.569	61.111	14.25	14.25	40.58	4.20
1495	1497	1.334599	GCGAAACGGACAGAAAATGCA	60.335	47.619	0.00	0.00	0.00	3.96
1496	1498	2.856720	GCGAAACGGACAGAAAATGCAA	60.857	45.455	0.00	0.00	0.00	4.08
1497	1499	3.564511	CGAAACGGACAGAAAATGCAAT	58.435	40.909	0.00	0.00	0.00	3.56
1498	1500	3.361644	CGAAACGGACAGAAAATGCAATG	59.638	43.478	0.00	0.00	0.00	2.82
1500	1502	2.513753	ACGGACAGAAAATGCAATGGA	58.486	42.857	0.00	0.00	0.00	3.41
1501	1503	3.091545	ACGGACAGAAAATGCAATGGAT	58.908	40.909	0.00	0.00	0.00	3.41
1502	1504	3.511146	ACGGACAGAAAATGCAATGGATT	59.489	39.130	0.00	0.00	0.00	3.01
1503	1505	3.861113	CGGACAGAAAATGCAATGGATTG	59.139	43.478	0.00	0.00	40.66	2.67
1504	1506	4.186159	GGACAGAAAATGCAATGGATTGG	58.814	43.478	0.00	0.00	38.21	3.16
1505	1507	4.322953	GGACAGAAAATGCAATGGATTGGT	60.323	41.667	0.00	0.00	38.21	3.67
1506	1508	5.231702	ACAGAAAATGCAATGGATTGGTT	57.768	34.783	0.00	0.00	38.21	3.67
1507	1509	4.998672	ACAGAAAATGCAATGGATTGGTTG	59.001	37.500	0.00	2.80	38.21	3.77
1508	1510	5.221682	ACAGAAAATGCAATGGATTGGTTGA	60.222	36.000	0.00	0.00	38.21	3.18
1509	1511	5.701750	CAGAAAATGCAATGGATTGGTTGAA	59.298	36.000	0.00	0.00	38.21	2.69
1510	1512	5.935789	AGAAAATGCAATGGATTGGTTGAAG	59.064	36.000	0.00	0.00	38.21	3.02
1511	1513	3.899052	ATGCAATGGATTGGTTGAAGG	57.101	42.857	0.00	0.00	38.21	3.46
1512	1514	2.607499	TGCAATGGATTGGTTGAAGGT	58.393	42.857	1.67	0.00	38.21	3.50
1513	1515	2.562298	TGCAATGGATTGGTTGAAGGTC	59.438	45.455	1.67	0.00	38.21	3.85
1514	1516	2.827921	GCAATGGATTGGTTGAAGGTCT	59.172	45.455	1.67	0.00	38.21	3.85
1515	1517	3.367703	GCAATGGATTGGTTGAAGGTCTG	60.368	47.826	1.67	0.00	38.21	3.51
1516	1518	1.909700	TGGATTGGTTGAAGGTCTGC	58.090	50.000	0.00	0.00	0.00	4.26
1643	1801	3.812053	CCGAGCTTCAATTGATAGGGAAG	59.188	47.826	9.40	3.57	39.70	3.46
1776	1936	4.965814	AGATCAGAAGTTGTGTGTGATGT	58.034	39.130	0.00	0.00	29.73	3.06
2239	4299	8.436046	TCTCTTTGGATTTTGATTGGTTTTTG	57.564	30.769	0.00	0.00	0.00	2.44
2240	4300	8.263640	TCTCTTTGGATTTTGATTGGTTTTTGA	58.736	29.630	0.00	0.00	0.00	2.69
2241	4301	8.977267	TCTTTGGATTTTGATTGGTTTTTGAT	57.023	26.923	0.00	0.00	0.00	2.57
2242	4302	9.406113	TCTTTGGATTTTGATTGGTTTTTGATT	57.594	25.926	0.00	0.00	0.00	2.57
2243	4303	9.453325	CTTTGGATTTTGATTGGTTTTTGATTG	57.547	29.630	0.00	0.00	0.00	2.67
2244	4304	7.507733	TGGATTTTGATTGGTTTTTGATTGG	57.492	32.000	0.00	0.00	0.00	3.16
2245	4305	7.059156	TGGATTTTGATTGGTTTTTGATTGGT	58.941	30.769	0.00	0.00	0.00	3.67
2246	4306	7.559170	TGGATTTTGATTGGTTTTTGATTGGTT	59.441	29.630	0.00	0.00	0.00	3.67
2247	4307	8.412456	GGATTTTGATTGGTTTTTGATTGGTTT	58.588	29.630	0.00	0.00	0.00	3.27
2248	4308	9.800433	GATTTTGATTGGTTTTTGATTGGTTTT	57.200	25.926	0.00	0.00	0.00	2.43
2479	4585	9.547753	TTATGGTGTTATGAGCTAGAAGATTTC	57.452	33.333	0.00	0.00	0.00	2.17
2481	4587	5.463724	GGTGTTATGAGCTAGAAGATTTCGG	59.536	44.000	0.00	0.00	34.02	4.30
2572	4679	7.329717	GCTATTGAGACTCAATATTTCCTACCG	59.670	40.741	29.42	18.77	45.21	4.02
2662	4788	6.505344	TGGGGCTATCTAATGTTTGATATCCT	59.495	38.462	13.05	0.00	34.13	3.24
2721	4912	4.023963	TGAAAATACAATCGTGTCGGCAAA	60.024	37.500	0.00	0.00	39.30	3.68
2735	4926	6.494842	GTGTCGGCAAATCATATTACAACAT	58.505	36.000	0.00	0.00	0.00	2.71
2816	5007	2.586425	TGAACAGAGAAAGGCCAAAGG	58.414	47.619	5.01	0.00	0.00	3.11
2844	5035	3.617263	GCAATAGTTGTCGGAGTGGTTAG	59.383	47.826	0.00	0.00	0.00	2.34
2845	5036	4.817517	CAATAGTTGTCGGAGTGGTTAGT	58.182	43.478	0.00	0.00	0.00	2.24
2846	5037	2.814280	AGTTGTCGGAGTGGTTAGTG	57.186	50.000	0.00	0.00	0.00	2.74
2847	5038	1.343465	AGTTGTCGGAGTGGTTAGTGG	59.657	52.381	0.00	0.00	0.00	4.00
2848	5039	1.069668	GTTGTCGGAGTGGTTAGTGGT	59.930	52.381	0.00	0.00	0.00	4.16
2849	5040	1.416243	TGTCGGAGTGGTTAGTGGTT	58.584	50.000	0.00	0.00	0.00	3.67
2850	5041	2.596346	TGTCGGAGTGGTTAGTGGTTA	58.404	47.619	0.00	0.00	0.00	2.85
3167	5405	6.769512	AGCAAAGAAAAGTAGACATGGTCTA	58.230	36.000	0.00	2.10	41.51	2.59

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	59	3.364366	GGAAATCTGAAACAGCAGACACG	60.364	47.826	0.00	0.00	46.72	4.49
90	91	0.748450	ACAAGCTGCAAAGCATGTGT	59.252	45.000	7.87	2.84	43.73	3.72
251	252	7.172532	GCGGTGATTATAATTTCATCCACTACA	59.827	37.037	0.00	0.00	0.00	2.74
318	319	9.016438	GTCAAATTAGTTGTTCCCCAGTAATAA	57.984	33.333	0.00	0.00	38.47	1.40
343	344	8.798859	ATTATTTGAGCAGACATAGAACAAGT	57.201	30.769	0.00	0.00	0.00	3.16
384	385	8.523915	TGATGGCTTATTTCTTATGTGACAAT	57.476	30.769	0.00	0.00	0.00	2.71
390	391	7.093814	TGTGCTTTGATGGCTTATTTCTTATGT	60.094	33.333	0.00	0.00	0.00	2.29
438	439	1.067142	TGTCTGCGCCCTAAGTTAGTG	60.067	52.381	4.18	0.00	0.00	2.74
479	480	7.174599	TCTCTACTATCTAACGATACCAAAGGC	59.825	40.741	0.00	0.00	0.00	4.35
599	600	3.178046	TCATAGCAGTGGGGAACAACTA	58.822	45.455	0.00	0.00	0.00	2.24
723	725	1.953559	TGGCCAACGCTCATCTATTC	58.046	50.000	0.61	0.00	34.44	1.75
758	760	1.108776	CAGGACAAATGCCCTCATGG	58.891	55.000	0.00	0.00	32.23	3.66
1083	1085	2.599281	TTCCTCTGGCCGTCGTCA	60.599	61.111	0.00	0.00	0.00	4.35
1159	1161	2.040412	CTCCAAACCCTAGCTCAACCTT	59.960	50.000	0.00	0.00	0.00	3.50
1164	1166	3.418684	GTTTCTCCAAACCCTAGCTCA	57.581	47.619	0.00	0.00	36.62	4.26
1296	1298	4.335647	CCGCTTGTCAGCCACCCT	62.336	66.667	0.00	0.00	44.06	4.34
1338	1340	2.122945	TACCACCCACCGTCCACA	60.123	61.111	0.00	0.00	0.00	4.17
1401	1403	4.651008	GTCGAACGGACGCCCACA	62.651	66.667	0.00	0.00	35.61	4.17
1446	1448	1.329913	GCCCCATTTCCGGCTCAAAT	61.330	55.000	0.00	0.00	42.21	2.32
1472	1474	1.008329	TTTTCTGTCCGTTTCGCGTT	58.992	45.000	5.77	0.00	39.32	4.84
1495	1497	2.827921	GCAGACCTTCAACCAATCCATT	59.172	45.455	0.00	0.00	0.00	3.16
1496	1498	2.450476	GCAGACCTTCAACCAATCCAT	58.550	47.619	0.00	0.00	0.00	3.41
1497	1499	1.881925	CGCAGACCTTCAACCAATCCA	60.882	52.381	0.00	0.00	0.00	3.41
1498	1500	0.804989	CGCAGACCTTCAACCAATCC	59.195	55.000	0.00	0.00	0.00	3.01
1500	1502	0.609131	CCCGCAGACCTTCAACCAAT	60.609	55.000	0.00	0.00	0.00	3.16
1501	1503	1.228124	CCCGCAGACCTTCAACCAA	60.228	57.895	0.00	0.00	0.00	3.67
1502	1504	2.391724	GACCCGCAGACCTTCAACCA	62.392	60.000	0.00	0.00	0.00	3.67
1503	1505	1.671379	GACCCGCAGACCTTCAACC	60.671	63.158	0.00	0.00	0.00	3.77
1504	1506	2.027625	CGACCCGCAGACCTTCAAC	61.028	63.158	0.00	0.00	0.00	3.18
1505	1507	2.342279	CGACCCGCAGACCTTCAA	59.658	61.111	0.00	0.00	0.00	2.69
1506	1508	2.915659	ACGACCCGCAGACCTTCA	60.916	61.111	0.00	0.00	0.00	3.02
1507	1509	2.432628	CACGACCCGCAGACCTTC	60.433	66.667	0.00	0.00	0.00	3.46
1508	1510	4.681978	GCACGACCCGCAGACCTT	62.682	66.667	0.00	0.00	0.00	3.50
1643	1801	1.537202	GGCACAGACAGACACAATTCC	59.463	52.381	0.00	0.00	0.00	3.01
1776	1936	4.062293	CCATTGTAGTCACGAGAAACCAA	58.938	43.478	0.00	0.00	0.00	3.67
2016	2186	9.777575	GTTAAGCAGTTGTAACTTCAAGTTTAA	57.222	29.630	8.41	1.92	39.51	1.52
2174	4177	5.268544	CAATCATTATTCTGGTGTCTTGCG	58.731	41.667	0.00	0.00	0.00	4.85
2239	4299	6.073819	GCAAAGGACATACACAAAAACCAATC	60.074	38.462	0.00	0.00	0.00	2.67
2240	4300	5.757808	GCAAAGGACATACACAAAAACCAAT	59.242	36.000	0.00	0.00	0.00	3.16
2241	4301	5.105146	AGCAAAGGACATACACAAAAACCAA	60.105	36.000	0.00	0.00	0.00	3.67
2242	4302	4.404073	AGCAAAGGACATACACAAAAACCA	59.596	37.500	0.00	0.00	0.00	3.67
2243	4303	4.944048	AGCAAAGGACATACACAAAAACC	58.056	39.130	0.00	0.00	0.00	3.27
2244	4304	5.587289	TGAGCAAAGGACATACACAAAAAC	58.413	37.500	0.00	0.00	0.00	2.43
2245	4305	5.221224	CCTGAGCAAAGGACATACACAAAAA	60.221	40.000	0.00	0.00	40.02	1.94
2246	4306	4.278170	CCTGAGCAAAGGACATACACAAAA	59.722	41.667	0.00	0.00	40.02	2.44
2247	4307	3.820467	CCTGAGCAAAGGACATACACAAA	59.180	43.478	0.00	0.00	40.02	2.83
2248	4308	3.411446	CCTGAGCAAAGGACATACACAA	58.589	45.455	0.00	0.00	40.02	3.33
2249	4309	2.875672	GCCTGAGCAAAGGACATACACA	60.876	50.000	8.80	0.00	40.02	3.72
2479	4585	4.701956	ATTTCTTATTGGTGTGCTTCCG	57.298	40.909	0.00	0.00	0.00	4.30
2481	4587	7.367285	TGTGTAATTTCTTATTGGTGTGCTTC	58.633	34.615	0.00	0.00	0.00	3.86
2721	4912	9.187996	TGGATGTCACAAATGTTGTAATATGAT	57.812	29.630	0.00	0.00	43.23	2.45
2735	4926	6.889177	TGCCTATTTCTTATGGATGTCACAAA	59.111	34.615	0.00	0.00	0.00	2.83
2816	5007	4.032900	CACTCCGACAACTATTGCACATAC	59.967	45.833	0.00	0.00	0.00	2.39
2844	5035	1.200020	GTTCTGCAGCATGGTAACCAC	59.800	52.381	9.47	0.00	35.80	4.16
2845	5036	1.533625	GTTCTGCAGCATGGTAACCA	58.466	50.000	9.47	0.00	38.19	3.67
2846	5037	0.811281	GGTTCTGCAGCATGGTAACC	59.189	55.000	14.78	14.78	35.86	2.85
2847	5038	1.533625	TGGTTCTGCAGCATGGTAAC	58.466	50.000	9.47	7.01	35.86	2.50
2848	5039	2.284754	TTGGTTCTGCAGCATGGTAA	57.715	45.000	9.47	0.00	35.86	2.85
2849	5040	2.492881	CAATTGGTTCTGCAGCATGGTA	59.507	45.455	9.47	0.00	35.86	3.25
2850	5041	1.274167	CAATTGGTTCTGCAGCATGGT	59.726	47.619	9.47	0.00	35.86	3.55
3146	5384	7.918076	TGGATAGACCATGTCTACTTTTCTTT	58.082	34.615	6.13	0.00	46.06	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.