Multiple sequence alignment - TraesCS5A01G360300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G360300 chr5A 100.000 3770 0 0 1 3770 561972231 561976000 0.000000e+00 6962.0
1 TraesCS5A01G360300 chr5A 95.954 173 7 0 1078 1250 83626982 83626810 7.970000e-72 281.0
2 TraesCS5A01G360300 chr5A 96.988 166 5 0 1085 1250 280761059 280761224 2.870000e-71 279.0
3 TraesCS5A01G360300 chr5D 93.457 2751 95 40 1 2726 444899046 444901736 0.000000e+00 4004.0
4 TraesCS5A01G360300 chr5D 88.000 175 16 4 3280 3450 444902026 444902199 6.390000e-48 202.0
5 TraesCS5A01G360300 chr5D 92.366 131 10 0 3608 3738 393056266 393056396 1.790000e-43 187.0
6 TraesCS5A01G360300 chr5B 93.670 1801 76 15 892 2661 541947210 541949003 0.000000e+00 2660.0
7 TraesCS5A01G360300 chr5B 94.697 792 33 4 1 783 541946081 541946872 0.000000e+00 1221.0
8 TraesCS5A01G360300 chr5B 84.718 301 25 11 3298 3592 541950830 541951115 7.970000e-72 281.0
9 TraesCS5A01G360300 chr5B 93.506 77 5 0 3352 3428 211739456 211739532 8.560000e-22 115.0
10 TraesCS5A01G360300 chr5B 94.872 39 2 0 2692 2730 541949014 541949052 1.130000e-05 62.1
11 TraesCS5A01G360300 chr4B 97.129 209 6 0 1042 1250 5074782 5074574 1.670000e-93 353.0
12 TraesCS5A01G360300 chr3A 96.172 209 8 0 1042 1250 22815792 22815584 3.610000e-90 342.0
13 TraesCS5A01G360300 chr3A 96.988 166 5 0 1085 1250 634124418 634124583 2.870000e-71 279.0
14 TraesCS5A01G360300 chr3A 94.624 93 4 1 3355 3447 726123517 726123426 3.930000e-30 143.0
15 TraesCS5A01G360300 chr3A 100.000 74 0 0 3354 3427 659020191 659020118 1.830000e-28 137.0
16 TraesCS5A01G360300 chrUn 95.215 209 10 0 1042 1250 2319894 2319686 7.810000e-87 331.0
17 TraesCS5A01G360300 chrUn 93.600 125 8 0 3614 3738 147284741 147284865 1.790000e-43 187.0
18 TraesCS5A01G360300 chr2A 96.988 166 5 0 1085 1250 729397990 729398155 2.870000e-71 279.0
19 TraesCS5A01G360300 chr3B 93.130 131 8 1 3608 3738 655858719 655858590 1.380000e-44 191.0
20 TraesCS5A01G360300 chr3B 90.909 110 5 4 3336 3443 798525937 798525831 3.930000e-30 143.0
21 TraesCS5A01G360300 chr2B 93.651 126 8 0 3613 3738 548925006 548925131 4.970000e-44 189.0
22 TraesCS5A01G360300 chr6A 92.366 131 9 1 3617 3746 319596151 319596281 6.430000e-43 185.0
23 TraesCS5A01G360300 chr6A 91.045 134 10 1 3616 3749 33182648 33182779 2.990000e-41 180.0
24 TraesCS5A01G360300 chr4A 90.714 140 11 1 3613 3752 743546115 743545978 6.430000e-43 185.0
25 TraesCS5A01G360300 chr7A 92.248 129 10 0 3614 3742 290925946 290926074 2.310000e-42 183.0
26 TraesCS5A01G360300 chr1D 88.591 149 12 3 3615 3762 493313524 493313668 3.870000e-40 176.0
27 TraesCS5A01G360300 chr7B 95.506 89 4 0 3355 3443 372325570 372325658 3.930000e-30 143.0
28 TraesCS5A01G360300 chr3D 92.784 97 4 2 3336 3430 595076964 595076869 1.830000e-28 137.0
29 TraesCS5A01G360300 chr3D 98.684 76 1 0 3355 3430 524718120 524718045 6.570000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G360300 chr5A 561972231 561976000 3769 False 6962.000 6962 100.00000 1 3770 1 chr5A.!!$F2 3769
1 TraesCS5A01G360300 chr5D 444899046 444902199 3153 False 2103.000 4004 90.72850 1 3450 2 chr5D.!!$F2 3449
2 TraesCS5A01G360300 chr5B 541946081 541951115 5034 False 1056.025 2660 91.98925 1 3592 4 chr5B.!!$F2 3591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 547 0.109597 GCCGAGATGCACAAGTTTGG 60.110 55.0 0.0 0.0 0.0 3.28 F
1256 1522 0.460987 CGTGCCAGATCCTTGACTCC 60.461 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2489 2758 0.387202 CTCGACGGCAATGGATCTCT 59.613 55.0 0.00 0.0 0.00 3.10 R
2872 3155 0.033504 GGTCGCTGGAGTCTGACAAA 59.966 55.0 10.88 0.0 33.04 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 2.820728 TCAACTCCATCCTCCTACGA 57.179 50.000 0.00 0.00 0.00 3.43
235 236 2.583441 CCACTTCCCGCTCTCCACA 61.583 63.158 0.00 0.00 0.00 4.17
544 545 1.577328 CCGCCGAGATGCACAAGTTT 61.577 55.000 0.00 0.00 0.00 2.66
546 547 0.109597 GCCGAGATGCACAAGTTTGG 60.110 55.000 0.00 0.00 0.00 3.28
666 667 0.938637 CATCTCGCTCTCCGATGCAC 60.939 60.000 0.00 0.00 46.31 4.57
670 671 2.951745 GCTCTCCGATGCACGACG 60.952 66.667 9.75 6.54 45.77 5.12
736 743 9.827411 GTACATAAGAAGAAATGTTGGAGTTTC 57.173 33.333 0.00 0.00 37.50 2.78
756 764 2.636403 TCCAGTGCCATAGATCATCCAG 59.364 50.000 0.00 0.00 0.00 3.86
760 770 5.130643 CCAGTGCCATAGATCATCCAGATAT 59.869 44.000 0.00 0.00 37.00 1.63
778 788 9.409918 TCCAGATATCCTACTAATGTATAGCAC 57.590 37.037 0.00 0.00 0.00 4.40
779 789 9.190317 CCAGATATCCTACTAATGTATAGCACA 57.810 37.037 0.00 0.00 42.69 4.57
781 791 9.755122 AGATATCCTACTAATGTATAGCACACA 57.245 33.333 0.00 0.00 40.86 3.72
784 794 7.833285 TCCTACTAATGTATAGCACACATGA 57.167 36.000 0.00 0.00 40.86 3.07
832 843 8.936864 ACTGTAACAATATGAACTTAGTTCTGC 58.063 33.333 23.27 7.77 42.39 4.26
849 860 3.946606 TCTGCATGAATCTGAAGCTTGA 58.053 40.909 2.10 0.00 0.00 3.02
851 862 5.677567 TCTGCATGAATCTGAAGCTTGATA 58.322 37.500 2.10 0.00 0.00 2.15
867 878 4.711846 GCTTGATATTTTCCCCCTGTTTCT 59.288 41.667 0.00 0.00 0.00 2.52
890 901 2.227194 GGGGATTCGACAGTTTTGTGT 58.773 47.619 0.00 0.00 37.76 3.72
953 1199 7.868415 ACTAGCAGCTACAAATTACAGTATAGC 59.132 37.037 0.00 2.93 36.19 2.97
954 1200 6.821388 AGCAGCTACAAATTACAGTATAGCT 58.179 36.000 6.79 6.79 44.70 3.32
1016 1268 6.222038 TCTTCAGTTACAAAGTGAGTGAGT 57.778 37.500 0.00 0.00 41.54 3.41
1036 1296 2.904866 TTGTTCGCTGTGGCCACC 60.905 61.111 32.62 17.38 34.44 4.61
1062 1325 0.995024 AGTCCAGTCCCCAAATCCAG 59.005 55.000 0.00 0.00 0.00 3.86
1250 1516 2.579201 CCGACGTGCCAGATCCTT 59.421 61.111 0.00 0.00 0.00 3.36
1256 1522 0.460987 CGTGCCAGATCCTTGACTCC 60.461 60.000 0.00 0.00 0.00 3.85
1337 1603 3.955101 CTCCTCTACGCCGCCGAG 61.955 72.222 0.00 0.00 38.29 4.63
1574 1840 2.110006 GCCATCTTCCTCTCCGCC 59.890 66.667 0.00 0.00 0.00 6.13
1736 2002 3.052082 CAGGTGAAGGGCTGCGTG 61.052 66.667 0.00 0.00 0.00 5.34
1739 2005 2.280797 GTGAAGGGCTGCGTGACA 60.281 61.111 0.00 0.00 0.00 3.58
1769 2035 3.243501 TGAACAGCTTCAGCAATTTCACC 60.244 43.478 0.75 0.00 45.16 4.02
1770 2036 2.309613 ACAGCTTCAGCAATTTCACCA 58.690 42.857 0.75 0.00 45.16 4.17
1787 2053 2.091112 CAGCTCCGCACTGACGAAG 61.091 63.158 0.00 0.00 37.32 3.79
1792 2058 2.091112 CCGCACTGACGAAGCAGAG 61.091 63.158 10.65 5.16 39.20 3.35
1797 2063 1.153667 CTGACGAAGCAGAGGGAGC 60.154 63.158 0.00 0.00 38.14 4.70
1919 2185 1.538876 AGCCTACTGGGTGGAAGCA 60.539 57.895 0.00 0.00 43.33 3.91
1925 2191 1.811266 CTGGGTGGAAGCATCGTCG 60.811 63.158 0.00 0.00 34.77 5.12
2138 2407 1.135094 ATCTGGTGGATGAAGCCGAT 58.865 50.000 0.00 0.00 32.69 4.18
2186 2455 2.401351 GACGAGGACGGTAATAATGGC 58.599 52.381 0.00 0.00 44.46 4.40
2189 2458 2.401351 GAGGACGGTAATAATGGCGAC 58.599 52.381 0.00 0.00 0.00 5.19
2244 2513 3.351450 CAGCAGCAGCAGCAAAGA 58.649 55.556 12.92 0.00 45.49 2.52
2420 2689 1.218316 CTACAGGTCCAAGGTCGCC 59.782 63.158 0.00 0.00 0.00 5.54
2454 2723 4.072131 GTCTTTCCTGAACAGCACCAATA 58.928 43.478 0.00 0.00 0.00 1.90
2455 2724 4.154918 GTCTTTCCTGAACAGCACCAATAG 59.845 45.833 0.00 0.00 0.00 1.73
2502 2771 0.536915 GGCAGGAGAGATCCATTGCC 60.537 60.000 10.68 10.68 41.72 4.52
2513 2782 1.218047 CCATTGCCGTCGAGAGGAA 59.782 57.895 10.77 1.13 0.00 3.36
2514 2783 0.179073 CCATTGCCGTCGAGAGGAAT 60.179 55.000 10.77 3.52 0.00 3.01
2515 2784 0.933097 CATTGCCGTCGAGAGGAATG 59.067 55.000 12.46 12.46 0.00 2.67
2556 2828 0.607489 GCATGGTCTGGTCTGCAGTT 60.607 55.000 14.67 0.00 34.77 3.16
2566 2838 1.004560 TCTGCAGTTGGCCTCTTCG 60.005 57.895 14.67 0.00 43.89 3.79
2646 2923 8.654485 TGGAATTCCATTGCTTTGCTATATAT 57.346 30.769 23.63 0.00 42.01 0.86
2652 2929 7.177184 TCCATTGCTTTGCTATATATGGTCAT 58.823 34.615 0.00 0.00 34.21 3.06
2671 2948 8.017418 TGGTCATATACATACTCACATTGTCA 57.983 34.615 0.00 0.00 0.00 3.58
2672 2949 8.482128 TGGTCATATACATACTCACATTGTCAA 58.518 33.333 0.00 0.00 0.00 3.18
2679 2956 6.042777 ACATACTCACATTGTCAATCGTAGG 58.957 40.000 0.00 0.72 0.00 3.18
2680 2957 3.262420 ACTCACATTGTCAATCGTAGGC 58.738 45.455 0.00 0.00 0.00 3.93
2681 2958 2.267426 TCACATTGTCAATCGTAGGCG 58.733 47.619 0.00 0.00 39.92 5.52
2682 2959 1.999735 CACATTGTCAATCGTAGGCGT 59.000 47.619 0.00 0.00 39.49 5.68
2683 2960 1.999735 ACATTGTCAATCGTAGGCGTG 59.000 47.619 0.00 0.00 39.49 5.34
2684 2961 1.327460 CATTGTCAATCGTAGGCGTGG 59.673 52.381 0.00 0.00 39.49 4.94
2685 2962 1.017177 TTGTCAATCGTAGGCGTGGC 61.017 55.000 0.00 0.00 39.49 5.01
2686 2963 1.153628 GTCAATCGTAGGCGTGGCT 60.154 57.895 0.38 0.38 39.49 4.75
2687 2964 1.141019 TCAATCGTAGGCGTGGCTC 59.859 57.895 0.00 0.00 39.49 4.70
2688 2965 2.104331 AATCGTAGGCGTGGCTCG 59.896 61.111 4.32 4.32 43.12 5.03
2726 3003 5.669477 AGATCTCCTTATGAACTTGCAGTC 58.331 41.667 0.00 0.00 0.00 3.51
2741 3018 3.103447 GCAGTCAGCATAGTAGATGCA 57.897 47.619 11.78 0.00 46.77 3.96
2742 3019 3.461061 GCAGTCAGCATAGTAGATGCAA 58.539 45.455 11.78 0.00 46.77 4.08
2743 3020 3.247173 GCAGTCAGCATAGTAGATGCAAC 59.753 47.826 11.78 9.02 46.77 4.17
2744 3021 4.691175 CAGTCAGCATAGTAGATGCAACT 58.309 43.478 11.78 10.87 46.77 3.16
2745 3022 5.114780 CAGTCAGCATAGTAGATGCAACTT 58.885 41.667 11.78 0.00 46.77 2.66
2746 3023 5.583854 CAGTCAGCATAGTAGATGCAACTTT 59.416 40.000 11.78 0.00 46.77 2.66
2747 3024 6.093219 CAGTCAGCATAGTAGATGCAACTTTT 59.907 38.462 11.78 0.00 46.77 2.27
2748 3025 6.314896 AGTCAGCATAGTAGATGCAACTTTTC 59.685 38.462 11.78 0.00 46.77 2.29
2749 3026 5.291858 TCAGCATAGTAGATGCAACTTTTCG 59.708 40.000 11.78 0.00 46.77 3.46
2750 3027 4.572389 AGCATAGTAGATGCAACTTTTCGG 59.428 41.667 11.78 0.00 46.77 4.30
2751 3028 4.570772 GCATAGTAGATGCAACTTTTCGGA 59.429 41.667 0.30 0.00 44.00 4.55
2752 3029 5.502544 GCATAGTAGATGCAACTTTTCGGAC 60.503 44.000 0.30 0.00 44.00 4.79
2753 3030 4.002906 AGTAGATGCAACTTTTCGGACA 57.997 40.909 0.30 0.00 0.00 4.02
2754 3031 4.579869 AGTAGATGCAACTTTTCGGACAT 58.420 39.130 0.30 0.00 0.00 3.06
2755 3032 5.730550 AGTAGATGCAACTTTTCGGACATA 58.269 37.500 0.30 0.00 0.00 2.29
2756 3033 4.946784 AGATGCAACTTTTCGGACATAC 57.053 40.909 0.00 0.00 0.00 2.39
2757 3034 3.689649 AGATGCAACTTTTCGGACATACC 59.310 43.478 0.00 0.00 0.00 2.73
2758 3035 2.852449 TGCAACTTTTCGGACATACCA 58.148 42.857 0.00 0.00 38.90 3.25
2759 3036 3.417101 TGCAACTTTTCGGACATACCAT 58.583 40.909 0.00 0.00 38.90 3.55
2760 3037 4.580868 TGCAACTTTTCGGACATACCATA 58.419 39.130 0.00 0.00 38.90 2.74
2761 3038 4.634004 TGCAACTTTTCGGACATACCATAG 59.366 41.667 0.00 0.00 38.90 2.23
2762 3039 4.495844 GCAACTTTTCGGACATACCATAGC 60.496 45.833 0.00 0.00 38.90 2.97
2763 3040 4.755266 ACTTTTCGGACATACCATAGCT 57.245 40.909 0.00 0.00 38.90 3.32
2764 3041 4.442706 ACTTTTCGGACATACCATAGCTG 58.557 43.478 0.00 0.00 38.90 4.24
2765 3042 4.161565 ACTTTTCGGACATACCATAGCTGA 59.838 41.667 0.00 0.00 38.90 4.26
2766 3043 4.955811 TTTCGGACATACCATAGCTGAT 57.044 40.909 0.00 0.00 38.90 2.90
2767 3044 3.942130 TCGGACATACCATAGCTGATG 57.058 47.619 0.00 0.00 38.90 3.07
2781 3058 7.126726 CATAGCTGATGGAATAAGTAAGCAC 57.873 40.000 0.00 0.00 31.20 4.40
2782 3059 4.455606 AGCTGATGGAATAAGTAAGCACC 58.544 43.478 0.00 0.00 0.00 5.01
2783 3060 4.080356 AGCTGATGGAATAAGTAAGCACCA 60.080 41.667 0.00 0.00 0.00 4.17
2784 3061 4.823989 GCTGATGGAATAAGTAAGCACCAT 59.176 41.667 0.00 0.00 40.21 3.55
2786 3063 5.948992 GATGGAATAAGTAAGCACCATCC 57.051 43.478 0.00 0.00 44.29 3.51
2792 3069 2.496899 AGTAAGCACCATCCAACCAG 57.503 50.000 0.00 0.00 0.00 4.00
2793 3070 1.705186 AGTAAGCACCATCCAACCAGT 59.295 47.619 0.00 0.00 0.00 4.00
2800 3077 1.588082 CATCCAACCAGTGCCTTGC 59.412 57.895 0.00 0.00 0.00 4.01
2802 3079 3.305516 CCAACCAGTGCCTTGCCC 61.306 66.667 0.00 0.00 0.00 5.36
2811 3088 1.304381 TGCCTTGCCCTGTGGAATC 60.304 57.895 0.00 0.00 0.00 2.52
2863 3142 4.022416 TGGTGCCAACAAGTTTGATGATAC 60.022 41.667 3.98 3.11 33.35 2.24
2882 3165 9.160496 GATGATACTTGATCTTTTTGTCAGACT 57.840 33.333 1.31 0.00 35.37 3.24
2883 3166 8.539770 TGATACTTGATCTTTTTGTCAGACTC 57.460 34.615 1.31 0.00 35.37 3.36
2885 3168 5.684704 ACTTGATCTTTTTGTCAGACTCCA 58.315 37.500 1.31 0.00 0.00 3.86
2887 3170 4.067896 TGATCTTTTTGTCAGACTCCAGC 58.932 43.478 1.31 0.00 0.00 4.85
2888 3171 2.483876 TCTTTTTGTCAGACTCCAGCG 58.516 47.619 1.31 0.00 0.00 5.18
2889 3172 2.102420 TCTTTTTGTCAGACTCCAGCGA 59.898 45.455 1.31 0.00 0.00 4.93
2890 3173 1.865865 TTTTGTCAGACTCCAGCGAC 58.134 50.000 1.31 0.00 0.00 5.19
2891 3174 0.033504 TTTGTCAGACTCCAGCGACC 59.966 55.000 1.31 0.00 0.00 4.79
2892 3175 0.827925 TTGTCAGACTCCAGCGACCT 60.828 55.000 1.31 0.00 0.00 3.85
2893 3176 1.214062 GTCAGACTCCAGCGACCTG 59.786 63.158 0.00 0.00 38.85 4.00
2894 3177 1.228583 TCAGACTCCAGCGACCTGT 60.229 57.895 0.00 0.00 37.38 4.00
2895 3178 1.214062 CAGACTCCAGCGACCTGTC 59.786 63.158 0.00 0.00 37.38 3.51
2904 3187 2.507102 CGACCTGTCGCTCGCAAT 60.507 61.111 6.77 0.00 46.50 3.56
2905 3188 2.792290 CGACCTGTCGCTCGCAATG 61.792 63.158 6.77 0.00 46.50 2.82
2906 3189 1.446099 GACCTGTCGCTCGCAATGA 60.446 57.895 0.00 0.00 0.00 2.57
2907 3190 1.687494 GACCTGTCGCTCGCAATGAC 61.687 60.000 0.00 0.00 0.00 3.06
2908 3191 1.737735 CCTGTCGCTCGCAATGACA 60.738 57.895 0.00 0.00 40.12 3.58
2909 3192 3.860717 TGTCGCTCGCAATGACAG 58.139 55.556 0.00 0.00 37.69 3.51
2910 3193 2.382746 TGTCGCTCGCAATGACAGC 61.383 57.895 0.00 0.00 37.69 4.40
2911 3194 2.097038 GTCGCTCGCAATGACAGCT 61.097 57.895 3.00 0.00 32.91 4.24
2912 3195 2.096442 TCGCTCGCAATGACAGCTG 61.096 57.895 13.48 13.48 0.00 4.24
2913 3196 2.099831 GCTCGCAATGACAGCTGC 59.900 61.111 15.27 7.45 35.14 5.25
2914 3197 2.396955 GCTCGCAATGACAGCTGCT 61.397 57.895 15.27 0.00 36.38 4.24
2915 3198 1.424240 CTCGCAATGACAGCTGCTG 59.576 57.895 27.02 27.02 36.38 4.41
2916 3199 1.978712 CTCGCAATGACAGCTGCTGG 61.979 60.000 31.00 15.36 36.38 4.85
2917 3200 2.330372 CGCAATGACAGCTGCTGGT 61.330 57.895 31.00 17.76 36.38 4.00
2918 3201 1.859427 CGCAATGACAGCTGCTGGTT 61.859 55.000 31.00 19.78 36.38 3.67
2919 3202 0.388134 GCAATGACAGCTGCTGGTTG 60.388 55.000 31.00 28.16 35.51 3.77
2920 3203 0.242825 CAATGACAGCTGCTGGTTGG 59.757 55.000 31.00 13.99 35.51 3.77
2921 3204 0.178981 AATGACAGCTGCTGGTTGGT 60.179 50.000 31.00 11.88 35.51 3.67
2922 3205 0.607489 ATGACAGCTGCTGGTTGGTC 60.607 55.000 31.00 19.77 35.51 4.02
2923 3206 2.281070 ACAGCTGCTGGTTGGTCG 60.281 61.111 31.00 6.22 35.51 4.79
2924 3207 2.281070 CAGCTGCTGGTTGGTCGT 60.281 61.111 21.71 0.00 0.00 4.34
2928 3211 2.279851 TGCTGGTTGGTCGTGTCG 60.280 61.111 0.00 0.00 0.00 4.35
2933 3216 3.698463 GTTGGTCGTGTCGTGCCG 61.698 66.667 0.00 0.00 0.00 5.69
2934 3217 4.210093 TTGGTCGTGTCGTGCCGT 62.210 61.111 0.00 0.00 0.00 5.68
2938 3221 2.104530 TCGTGTCGTGCCGTGAAA 59.895 55.556 0.00 0.00 0.00 2.69
2955 3238 3.944250 AAATGGAGCTGGCACCGGG 62.944 63.158 6.32 0.00 0.00 5.73
2983 3266 1.131126 CAGCGAAGAACATCGGCAAAT 59.869 47.619 1.99 0.00 42.93 2.32
2988 3271 3.242413 CGAAGAACATCGGCAAATACCTG 60.242 47.826 0.00 0.00 39.12 4.00
2990 3273 3.950397 AGAACATCGGCAAATACCTGAA 58.050 40.909 0.00 0.00 0.00 3.02
2998 3281 4.155826 TCGGCAAATACCTGAACTTTGATG 59.844 41.667 0.00 0.00 32.83 3.07
2999 3282 4.082787 CGGCAAATACCTGAACTTTGATGT 60.083 41.667 0.00 0.00 32.83 3.06
3000 3283 5.564651 CGGCAAATACCTGAACTTTGATGTT 60.565 40.000 0.00 0.00 32.83 2.71
3002 3285 7.375053 GGCAAATACCTGAACTTTGATGTTTA 58.625 34.615 0.00 0.00 32.83 2.01
3003 3286 7.328493 GGCAAATACCTGAACTTTGATGTTTAC 59.672 37.037 0.00 0.00 32.83 2.01
3004 3287 7.328493 GCAAATACCTGAACTTTGATGTTTACC 59.672 37.037 0.00 0.00 32.83 2.85
3005 3288 6.737254 ATACCTGAACTTTGATGTTTACCG 57.263 37.500 0.00 0.00 0.00 4.02
3007 3290 3.818773 CCTGAACTTTGATGTTTACCGGT 59.181 43.478 13.98 13.98 0.00 5.28
3008 3291 4.277423 CCTGAACTTTGATGTTTACCGGTT 59.723 41.667 15.04 0.00 0.00 4.44
3009 3292 5.221165 CCTGAACTTTGATGTTTACCGGTTT 60.221 40.000 15.04 0.00 0.00 3.27
3017 3300 4.755629 TGATGTTTACCGGTTTCGATTTCA 59.244 37.500 15.04 5.31 39.00 2.69
3018 3301 4.735662 TGTTTACCGGTTTCGATTTCAG 57.264 40.909 15.04 0.00 39.00 3.02
3023 3306 3.528532 ACCGGTTTCGATTTCAGATACC 58.471 45.455 0.00 0.00 39.00 2.73
3036 3319 3.112263 TCAGATACCGGGAATGGAACTT 58.888 45.455 6.32 0.00 0.00 2.66
3043 3326 3.009695 ACCGGGAATGGAACTTGATGTAA 59.990 43.478 6.32 0.00 0.00 2.41
3044 3327 3.627577 CCGGGAATGGAACTTGATGTAAG 59.372 47.826 0.00 0.00 42.30 2.34
3045 3328 3.065371 CGGGAATGGAACTTGATGTAAGC 59.935 47.826 0.00 0.00 40.16 3.09
3079 3362 1.274703 TGTCTGATCAAGGAGCCCCC 61.275 60.000 0.00 0.00 0.00 5.40
3098 3381 0.041312 CGGTGTCCGTTTGCTTCTTG 60.041 55.000 0.00 0.00 42.73 3.02
3121 3405 0.729690 GAGCATTTCGGGTCAAGAGC 59.270 55.000 0.00 0.00 35.43 4.09
3143 3427 3.441572 CCAGTCTTCCATTCCATGTTGTC 59.558 47.826 0.00 0.00 0.00 3.18
3148 3432 4.761739 TCTTCCATTCCATGTTGTCAACTC 59.238 41.667 16.45 0.00 0.00 3.01
3154 3438 1.266718 CCATGTTGTCAACTCGTTGGG 59.733 52.381 16.45 5.62 40.78 4.12
3155 3439 0.951558 ATGTTGTCAACTCGTTGGGC 59.048 50.000 16.45 4.62 40.78 5.36
3156 3440 1.098712 TGTTGTCAACTCGTTGGGCC 61.099 55.000 16.45 0.00 40.78 5.80
3157 3441 0.818040 GTTGTCAACTCGTTGGGCCT 60.818 55.000 4.53 0.00 40.78 5.19
3158 3442 0.759959 TTGTCAACTCGTTGGGCCTA 59.240 50.000 4.53 0.00 40.78 3.93
3159 3443 0.981183 TGTCAACTCGTTGGGCCTAT 59.019 50.000 4.53 0.00 40.78 2.57
3176 3472 4.168760 GCCTATGCTTGATTGTTGTCAAC 58.831 43.478 8.86 8.86 34.58 3.18
3177 3473 4.082571 GCCTATGCTTGATTGTTGTCAACT 60.083 41.667 16.45 0.00 34.58 3.16
3178 3474 5.565439 GCCTATGCTTGATTGTTGTCAACTT 60.565 40.000 16.45 4.54 34.58 2.66
3179 3475 5.860182 CCTATGCTTGATTGTTGTCAACTTG 59.140 40.000 16.45 2.55 36.33 3.16
3180 3476 4.717233 TGCTTGATTGTTGTCAACTTGT 57.283 36.364 16.45 2.93 36.33 3.16
3181 3477 4.422840 TGCTTGATTGTTGTCAACTTGTG 58.577 39.130 16.45 4.07 36.33 3.33
3202 3498 4.393371 GTGAAGGAAATAGCTCAAGGTGTC 59.607 45.833 0.00 0.00 0.00 3.67
3204 3500 2.567615 AGGAAATAGCTCAAGGTGTCGT 59.432 45.455 0.00 0.00 0.00 4.34
3208 3504 2.433868 TAGCTCAAGGTGTCGTTGTC 57.566 50.000 0.00 0.00 32.10 3.18
3210 3506 0.861837 GCTCAAGGTGTCGTTGTCTG 59.138 55.000 2.92 0.00 32.10 3.51
3224 3520 0.961019 TGTCTGCCATGTTTCTTGCC 59.039 50.000 0.00 0.00 0.00 4.52
3227 3523 2.036346 GTCTGCCATGTTTCTTGCCTTT 59.964 45.455 0.00 0.00 0.00 3.11
3228 3524 2.699846 TCTGCCATGTTTCTTGCCTTTT 59.300 40.909 0.00 0.00 0.00 2.27
3229 3525 3.062042 CTGCCATGTTTCTTGCCTTTTC 58.938 45.455 0.00 0.00 0.00 2.29
3237 3533 3.982576 TTCTTGCCTTTTCCGTTTCTC 57.017 42.857 0.00 0.00 0.00 2.87
3238 3534 3.208747 TCTTGCCTTTTCCGTTTCTCT 57.791 42.857 0.00 0.00 0.00 3.10
3239 3535 2.878406 TCTTGCCTTTTCCGTTTCTCTG 59.122 45.455 0.00 0.00 0.00 3.35
3268 4840 5.391203 GGATGGTTTGTTACGTATGTTCCAC 60.391 44.000 0.00 0.00 0.00 4.02
3295 4867 1.595093 CTTCCGGCAATTGTCCACCC 61.595 60.000 16.01 4.74 0.00 4.61
3311 4906 1.066143 CACCCGATTACTGTTGCTCCT 60.066 52.381 0.00 0.00 0.00 3.69
3315 4910 2.167693 CCGATTACTGTTGCTCCTGGTA 59.832 50.000 0.00 0.00 0.00 3.25
3328 4923 4.164030 TGCTCCTGGTATCTGATTTTAGCA 59.836 41.667 0.00 0.00 34.14 3.49
3350 4945 4.392619 TCGGTTTTATTTACTGTGCACG 57.607 40.909 13.13 9.67 0.00 5.34
3429 5024 4.643387 GTCCCACTGGGCGTGCTT 62.643 66.667 9.60 0.00 43.94 3.91
3432 5027 2.743928 CCACTGGGCGTGCTTCTC 60.744 66.667 0.00 0.00 42.42 2.87
3439 5034 0.039165 GGGCGTGCTTCTCCTTTTTG 60.039 55.000 0.00 0.00 0.00 2.44
3443 5038 3.186909 GCGTGCTTCTCCTTTTTGTTTT 58.813 40.909 0.00 0.00 0.00 2.43
3445 5040 3.000222 CGTGCTTCTCCTTTTTGTTTTGC 60.000 43.478 0.00 0.00 0.00 3.68
3457 5052 6.238456 CCTTTTTGTTTTGCATTTCCCTTCTC 60.238 38.462 0.00 0.00 0.00 2.87
3460 5055 3.966665 TGTTTTGCATTTCCCTTCTCCTT 59.033 39.130 0.00 0.00 0.00 3.36
3462 5057 5.104569 TGTTTTGCATTTCCCTTCTCCTTTT 60.105 36.000 0.00 0.00 0.00 2.27
3463 5058 6.098982 TGTTTTGCATTTCCCTTCTCCTTTTA 59.901 34.615 0.00 0.00 0.00 1.52
3464 5059 5.982890 TTGCATTTCCCTTCTCCTTTTAG 57.017 39.130 0.00 0.00 0.00 1.85
3465 5060 4.998051 TGCATTTCCCTTCTCCTTTTAGT 58.002 39.130 0.00 0.00 0.00 2.24
3470 5065 7.976175 GCATTTCCCTTCTCCTTTTAGTATTTG 59.024 37.037 0.00 0.00 0.00 2.32
3473 5068 7.996098 TCCCTTCTCCTTTTAGTATTTGTTG 57.004 36.000 0.00 0.00 0.00 3.33
3476 5071 8.082242 CCCTTCTCCTTTTAGTATTTGTTGTTG 58.918 37.037 0.00 0.00 0.00 3.33
3477 5072 8.630037 CCTTCTCCTTTTAGTATTTGTTGTTGT 58.370 33.333 0.00 0.00 0.00 3.32
3479 5074 9.796120 TTCTCCTTTTAGTATTTGTTGTTGTTG 57.204 29.630 0.00 0.00 0.00 3.33
3480 5075 8.962679 TCTCCTTTTAGTATTTGTTGTTGTTGT 58.037 29.630 0.00 0.00 0.00 3.32
3481 5076 9.581099 CTCCTTTTAGTATTTGTTGTTGTTGTT 57.419 29.630 0.00 0.00 0.00 2.83
3592 5192 0.179062 TGCATGTTTTTGTGGTGCCC 60.179 50.000 0.00 0.00 35.03 5.36
3593 5193 0.884259 GCATGTTTTTGTGGTGCCCC 60.884 55.000 0.00 0.00 0.00 5.80
3594 5194 0.758123 CATGTTTTTGTGGTGCCCCT 59.242 50.000 0.00 0.00 0.00 4.79
3595 5195 1.140652 CATGTTTTTGTGGTGCCCCTT 59.859 47.619 0.00 0.00 0.00 3.95
3596 5196 0.827368 TGTTTTTGTGGTGCCCCTTC 59.173 50.000 0.00 0.00 0.00 3.46
3597 5197 0.105964 GTTTTTGTGGTGCCCCTTCC 59.894 55.000 0.00 0.00 0.00 3.46
3598 5198 0.031616 TTTTTGTGGTGCCCCTTCCT 60.032 50.000 0.00 0.00 0.00 3.36
3599 5199 0.031616 TTTTGTGGTGCCCCTTCCTT 60.032 50.000 0.00 0.00 0.00 3.36
3600 5200 0.469144 TTTGTGGTGCCCCTTCCTTC 60.469 55.000 0.00 0.00 0.00 3.46
3601 5201 1.650242 TTGTGGTGCCCCTTCCTTCA 61.650 55.000 0.00 0.00 0.00 3.02
3602 5202 1.152830 GTGGTGCCCCTTCCTTCAA 59.847 57.895 0.00 0.00 0.00 2.69
3603 5203 1.152830 TGGTGCCCCTTCCTTCAAC 59.847 57.895 0.00 0.00 0.00 3.18
3604 5204 1.360393 TGGTGCCCCTTCCTTCAACT 61.360 55.000 0.00 0.00 0.00 3.16
3605 5205 0.178961 GGTGCCCCTTCCTTCAACTT 60.179 55.000 0.00 0.00 0.00 2.66
3606 5206 0.961753 GTGCCCCTTCCTTCAACTTG 59.038 55.000 0.00 0.00 0.00 3.16
3607 5207 0.178964 TGCCCCTTCCTTCAACTTGG 60.179 55.000 0.00 0.00 0.00 3.61
3608 5208 0.112412 GCCCCTTCCTTCAACTTGGA 59.888 55.000 0.00 0.00 0.00 3.53
3609 5209 1.272704 GCCCCTTCCTTCAACTTGGAT 60.273 52.381 0.00 0.00 31.76 3.41
3610 5210 2.450476 CCCCTTCCTTCAACTTGGATG 58.550 52.381 0.00 0.00 31.76 3.51
3611 5211 1.821136 CCCTTCCTTCAACTTGGATGC 59.179 52.381 0.00 0.00 31.76 3.91
3612 5212 1.470098 CCTTCCTTCAACTTGGATGCG 59.530 52.381 0.00 0.00 31.76 4.73
3613 5213 2.426522 CTTCCTTCAACTTGGATGCGA 58.573 47.619 0.00 0.00 31.76 5.10
3614 5214 2.559698 TCCTTCAACTTGGATGCGAA 57.440 45.000 0.00 0.00 0.00 4.70
3615 5215 2.857483 TCCTTCAACTTGGATGCGAAA 58.143 42.857 0.00 0.00 0.00 3.46
3616 5216 3.420893 TCCTTCAACTTGGATGCGAAAT 58.579 40.909 0.00 0.00 0.00 2.17
3617 5217 4.584874 TCCTTCAACTTGGATGCGAAATA 58.415 39.130 0.00 0.00 0.00 1.40
3618 5218 4.394920 TCCTTCAACTTGGATGCGAAATAC 59.605 41.667 0.00 0.00 0.00 1.89
3619 5219 4.396166 CCTTCAACTTGGATGCGAAATACT 59.604 41.667 0.00 0.00 0.00 2.12
3620 5220 5.447818 CCTTCAACTTGGATGCGAAATACTC 60.448 44.000 0.00 0.00 0.00 2.59
3621 5221 3.938963 TCAACTTGGATGCGAAATACTCC 59.061 43.478 0.00 0.00 0.00 3.85
3622 5222 2.919228 ACTTGGATGCGAAATACTCCC 58.081 47.619 0.00 0.00 0.00 4.30
3623 5223 2.505819 ACTTGGATGCGAAATACTCCCT 59.494 45.455 0.00 0.00 0.00 4.20
3624 5224 2.910688 TGGATGCGAAATACTCCCTC 57.089 50.000 0.00 0.00 0.00 4.30
3625 5225 2.398588 TGGATGCGAAATACTCCCTCT 58.601 47.619 0.00 0.00 0.00 3.69
3626 5226 2.103094 TGGATGCGAAATACTCCCTCTG 59.897 50.000 0.00 0.00 0.00 3.35
3627 5227 2.103263 GGATGCGAAATACTCCCTCTGT 59.897 50.000 0.00 0.00 0.00 3.41
3628 5228 2.961526 TGCGAAATACTCCCTCTGTC 57.038 50.000 0.00 0.00 0.00 3.51
3629 5229 1.480954 TGCGAAATACTCCCTCTGTCC 59.519 52.381 0.00 0.00 0.00 4.02
3630 5230 1.202545 GCGAAATACTCCCTCTGTCCC 60.203 57.143 0.00 0.00 0.00 4.46
3631 5231 2.108168 CGAAATACTCCCTCTGTCCCA 58.892 52.381 0.00 0.00 0.00 4.37
3632 5232 2.500098 CGAAATACTCCCTCTGTCCCAA 59.500 50.000 0.00 0.00 0.00 4.12
3633 5233 3.055385 CGAAATACTCCCTCTGTCCCAAA 60.055 47.826 0.00 0.00 0.00 3.28
3634 5234 4.564821 CGAAATACTCCCTCTGTCCCAAAA 60.565 45.833 0.00 0.00 0.00 2.44
3635 5235 5.510430 GAAATACTCCCTCTGTCCCAAAAT 58.490 41.667 0.00 0.00 0.00 1.82
3636 5236 5.536497 AATACTCCCTCTGTCCCAAAATT 57.464 39.130 0.00 0.00 0.00 1.82
3637 5237 6.652205 AATACTCCCTCTGTCCCAAAATTA 57.348 37.500 0.00 0.00 0.00 1.40
3638 5238 6.848562 ATACTCCCTCTGTCCCAAAATTAT 57.151 37.500 0.00 0.00 0.00 1.28
3639 5239 5.536497 ACTCCCTCTGTCCCAAAATTATT 57.464 39.130 0.00 0.00 0.00 1.40
3640 5240 5.264395 ACTCCCTCTGTCCCAAAATTATTG 58.736 41.667 0.00 0.00 0.00 1.90
3641 5241 5.222337 ACTCCCTCTGTCCCAAAATTATTGT 60.222 40.000 0.00 0.00 0.00 2.71
3642 5242 5.261216 TCCCTCTGTCCCAAAATTATTGTC 58.739 41.667 0.00 0.00 0.00 3.18
3643 5243 5.015178 TCCCTCTGTCCCAAAATTATTGTCT 59.985 40.000 0.00 0.00 0.00 3.41
3644 5244 5.716703 CCCTCTGTCCCAAAATTATTGTCTT 59.283 40.000 0.00 0.00 0.00 3.01
3645 5245 6.889722 CCCTCTGTCCCAAAATTATTGTCTTA 59.110 38.462 0.00 0.00 0.00 2.10
3646 5246 7.067494 CCCTCTGTCCCAAAATTATTGTCTTAG 59.933 40.741 0.00 0.00 0.00 2.18
3647 5247 7.829211 CCTCTGTCCCAAAATTATTGTCTTAGA 59.171 37.037 0.00 0.00 0.00 2.10
3648 5248 9.401058 CTCTGTCCCAAAATTATTGTCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
3649 5249 9.753674 TCTGTCCCAAAATTATTGTCTTAGATT 57.246 29.630 0.00 0.00 0.00 2.40
3652 5252 9.087424 GTCCCAAAATTATTGTCTTAGATTTGC 57.913 33.333 0.00 0.00 0.00 3.68
3653 5253 8.257306 TCCCAAAATTATTGTCTTAGATTTGCC 58.743 33.333 0.00 0.00 0.00 4.52
3654 5254 8.260114 CCCAAAATTATTGTCTTAGATTTGCCT 58.740 33.333 0.00 0.00 0.00 4.75
3663 5263 7.898014 TGTCTTAGATTTGCCTAGATACAGA 57.102 36.000 0.00 0.00 0.00 3.41
3664 5264 8.484214 TGTCTTAGATTTGCCTAGATACAGAT 57.516 34.615 0.00 0.00 0.00 2.90
3665 5265 8.363390 TGTCTTAGATTTGCCTAGATACAGATG 58.637 37.037 0.00 0.00 0.00 2.90
3666 5266 8.364142 GTCTTAGATTTGCCTAGATACAGATGT 58.636 37.037 0.00 0.00 0.00 3.06
3667 5267 9.588096 TCTTAGATTTGCCTAGATACAGATGTA 57.412 33.333 0.00 0.00 34.67 2.29
3699 5299 8.908786 ATTAAAACATGATCTGATACATCCGT 57.091 30.769 0.00 0.00 0.00 4.69
3700 5300 9.996554 ATTAAAACATGATCTGATACATCCGTA 57.003 29.630 0.00 0.00 0.00 4.02
3701 5301 9.996554 TTAAAACATGATCTGATACATCCGTAT 57.003 29.630 0.00 0.00 41.16 3.06
3702 5302 8.908786 AAAACATGATCTGATACATCCGTATT 57.091 30.769 0.00 0.00 38.48 1.89
3703 5303 8.908786 AAACATGATCTGATACATCCGTATTT 57.091 30.769 0.00 0.00 38.48 1.40
3704 5304 9.996554 AAACATGATCTGATACATCCGTATTTA 57.003 29.630 0.00 0.00 38.48 1.40
3705 5305 9.645059 AACATGATCTGATACATCCGTATTTAG 57.355 33.333 0.00 0.00 38.48 1.85
3706 5306 9.025041 ACATGATCTGATACATCCGTATTTAGA 57.975 33.333 0.00 0.00 38.48 2.10
3707 5307 9.295214 CATGATCTGATACATCCGTATTTAGAC 57.705 37.037 0.00 0.00 38.48 2.59
3708 5308 8.404107 TGATCTGATACATCCGTATTTAGACA 57.596 34.615 0.00 0.00 38.48 3.41
3709 5309 8.856103 TGATCTGATACATCCGTATTTAGACAA 58.144 33.333 0.00 0.00 38.48 3.18
3710 5310 9.692749 GATCTGATACATCCGTATTTAGACAAA 57.307 33.333 0.00 0.00 38.48 2.83
3730 5330 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
3731 5331 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
3732 5332 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
3733 5333 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
3734 5334 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
3735 5335 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3736 5336 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3737 5337 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3738 5338 2.107552 ACAAGAATTTTGGGACGGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
3739 5339 3.153919 CAAGAATTTTGGGACGGAGGAA 58.846 45.455 0.00 0.00 0.00 3.36
3740 5340 3.739401 AGAATTTTGGGACGGAGGAAT 57.261 42.857 0.00 0.00 0.00 3.01
3741 5341 4.855298 AGAATTTTGGGACGGAGGAATA 57.145 40.909 0.00 0.00 0.00 1.75
3742 5342 4.781934 AGAATTTTGGGACGGAGGAATAG 58.218 43.478 0.00 0.00 0.00 1.73
3743 5343 4.227527 AGAATTTTGGGACGGAGGAATAGT 59.772 41.667 0.00 0.00 0.00 2.12
3744 5344 5.427481 AGAATTTTGGGACGGAGGAATAGTA 59.573 40.000 0.00 0.00 0.00 1.82
3745 5345 4.476628 TTTTGGGACGGAGGAATAGTAC 57.523 45.455 0.00 0.00 0.00 2.73
3746 5346 3.393426 TTGGGACGGAGGAATAGTACT 57.607 47.619 0.00 0.00 0.00 2.73
3747 5347 4.524802 TTGGGACGGAGGAATAGTACTA 57.475 45.455 4.77 4.77 0.00 1.82
3748 5348 4.524802 TGGGACGGAGGAATAGTACTAA 57.475 45.455 6.70 0.00 0.00 2.24
3749 5349 5.070823 TGGGACGGAGGAATAGTACTAAT 57.929 43.478 6.70 0.00 0.00 1.73
3750 5350 5.075493 TGGGACGGAGGAATAGTACTAATC 58.925 45.833 6.70 8.09 0.00 1.75
3751 5351 5.075493 GGGACGGAGGAATAGTACTAATCA 58.925 45.833 17.66 0.00 0.00 2.57
3752 5352 5.183522 GGGACGGAGGAATAGTACTAATCAG 59.816 48.000 17.66 11.41 0.00 2.90
3753 5353 5.335819 GGACGGAGGAATAGTACTAATCAGC 60.336 48.000 17.66 9.60 0.00 4.26
3754 5354 5.386924 ACGGAGGAATAGTACTAATCAGCT 58.613 41.667 17.66 8.04 0.00 4.24
3755 5355 5.834204 ACGGAGGAATAGTACTAATCAGCTT 59.166 40.000 17.66 2.51 0.00 3.74
3756 5356 7.002879 ACGGAGGAATAGTACTAATCAGCTTA 58.997 38.462 17.66 0.00 0.00 3.09
3757 5357 7.040548 ACGGAGGAATAGTACTAATCAGCTTAC 60.041 40.741 17.66 3.52 0.00 2.34
3758 5358 7.175293 CGGAGGAATAGTACTAATCAGCTTACT 59.825 40.741 17.66 7.96 0.00 2.24
3759 5359 9.517868 GGAGGAATAGTACTAATCAGCTTACTA 57.482 37.037 17.66 3.78 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.290776 GCCCTCGCGAGAAATGTAT 57.709 52.632 36.59 0.00 41.32 2.29
85 86 4.408821 TCCAGCTTGCCGCGGATT 62.409 61.111 33.48 5.27 45.59 3.01
157 158 2.046314 CCGGCGAATTCACCAGGT 60.046 61.111 9.30 0.00 0.00 4.00
175 176 2.288778 CCAGGTGAGCAGCTCCTCA 61.289 63.158 20.16 2.28 38.41 3.86
235 236 4.698625 AGGCTCCGGACGGTCCTT 62.699 66.667 23.86 1.16 36.50 3.36
278 279 1.407656 AACTTGAGGTCCTCGGCACA 61.408 55.000 14.34 0.00 32.35 4.57
493 494 0.620410 TGCCCTCCTGCTTAGGCTTA 60.620 55.000 0.00 0.00 45.94 3.09
666 667 1.005347 GGTATTCGGAACAATGCGTCG 60.005 52.381 0.00 0.00 41.62 5.12
670 671 4.434713 AAACAGGTATTCGGAACAATGC 57.565 40.909 0.00 0.00 0.00 3.56
736 743 2.636403 TCTGGATGATCTATGGCACTGG 59.364 50.000 0.00 0.00 0.00 4.00
760 770 7.286775 TGTCATGTGTGCTATACATTAGTAGGA 59.713 37.037 0.00 0.00 42.24 2.94
775 785 1.538047 AAGGGATGTGTCATGTGTGC 58.462 50.000 0.00 0.00 0.00 4.57
778 788 3.904571 CACAAAAGGGATGTGTCATGTG 58.095 45.455 0.00 0.00 42.48 3.21
832 843 7.866393 GGGAAAATATCAAGCTTCAGATTCATG 59.134 37.037 0.00 0.00 0.00 3.07
849 860 3.023832 CGCAGAAACAGGGGGAAAATAT 58.976 45.455 0.00 0.00 0.00 1.28
851 862 1.256812 CGCAGAAACAGGGGGAAAAT 58.743 50.000 0.00 0.00 0.00 1.82
867 878 0.250553 AAAACTGTCGAATCCCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
890 901 8.389779 TCAGTGCTAGTTTTACATGAATTTCA 57.610 30.769 0.00 0.75 0.00 2.69
929 1175 7.952671 AGCTATACTGTAATTTGTAGCTGCTA 58.047 34.615 15.46 5.02 42.17 3.49
952 1198 5.391736 CCACAATCAGAATTCAGAAGTCAGC 60.392 44.000 12.96 0.00 0.00 4.26
953 1199 5.704515 ACCACAATCAGAATTCAGAAGTCAG 59.295 40.000 12.96 5.08 0.00 3.51
954 1200 5.624159 ACCACAATCAGAATTCAGAAGTCA 58.376 37.500 12.96 0.00 0.00 3.41
955 1201 6.566197 AACCACAATCAGAATTCAGAAGTC 57.434 37.500 8.44 2.17 0.00 3.01
957 1203 6.973843 TGAAACCACAATCAGAATTCAGAAG 58.026 36.000 8.44 5.31 0.00 2.85
959 1205 6.064060 ACTGAAACCACAATCAGAATTCAGA 58.936 36.000 16.77 5.51 44.64 3.27
960 1206 6.323203 ACTGAAACCACAATCAGAATTCAG 57.677 37.500 8.44 10.18 44.64 3.02
964 1210 9.911788 AGATATAACTGAAACCACAATCAGAAT 57.088 29.630 9.56 5.53 44.64 2.40
1016 1268 1.750780 TGGCCACAGCGAACAACAA 60.751 52.632 0.00 0.00 41.24 2.83
1036 1296 0.544357 TGGGGACTGGACTGGTACTG 60.544 60.000 0.00 0.00 0.00 2.74
1736 2002 0.610687 AGCTGTTCAGTAGGCCTGTC 59.389 55.000 17.99 8.72 42.19 3.51
1739 2005 1.352083 TGAAGCTGTTCAGTAGGCCT 58.648 50.000 11.78 11.78 37.79 5.19
1754 2020 2.094854 GGAGCTGGTGAAATTGCTGAAG 60.095 50.000 0.00 0.00 35.76 3.02
2018 2287 3.003763 ACGGCCTCCAGGACCTTC 61.004 66.667 0.00 0.00 41.34 3.46
2171 2440 1.134226 CGTCGCCATTATTACCGTCC 58.866 55.000 0.00 0.00 0.00 4.79
2186 2455 1.444553 GGCTTCAGTGTCTCCGTCG 60.445 63.158 0.00 0.00 0.00 5.12
2189 2458 0.734253 CTTCGGCTTCAGTGTCTCCG 60.734 60.000 11.50 11.50 41.30 4.63
2420 2689 1.219393 GAAAGACAGCCTCCTCCGG 59.781 63.158 0.00 0.00 0.00 5.14
2448 2717 0.759346 GATCAGGACGCCCTATTGGT 59.241 55.000 0.00 0.00 42.02 3.67
2487 2756 0.598680 CGACGGCAATGGATCTCTCC 60.599 60.000 0.00 0.00 42.45 3.71
2489 2758 0.387202 CTCGACGGCAATGGATCTCT 59.613 55.000 0.00 0.00 0.00 3.10
2502 2771 2.783828 AGTATGCATTCCTCTCGACG 57.216 50.000 3.54 0.00 0.00 5.12
2513 2782 5.705905 CAGATGGACATCATGAAGTATGCAT 59.294 40.000 14.16 3.79 40.22 3.96
2514 2783 5.061179 CAGATGGACATCATGAAGTATGCA 58.939 41.667 14.16 0.00 40.22 3.96
2515 2784 4.083431 GCAGATGGACATCATGAAGTATGC 60.083 45.833 14.16 6.31 40.22 3.14
2556 2828 1.071228 CATGATGATCCGAAGAGGCCA 59.929 52.381 5.01 0.00 40.77 5.36
2566 2838 2.158856 TCAGTGCTGTCCATGATGATCC 60.159 50.000 0.00 0.00 0.00 3.36
2645 2922 8.650490 TGACAATGTGAGTATGTATATGACCAT 58.350 33.333 0.00 0.00 0.00 3.55
2646 2923 8.017418 TGACAATGTGAGTATGTATATGACCA 57.983 34.615 0.00 0.00 0.00 4.02
2652 2929 9.893305 CTACGATTGACAATGTGAGTATGTATA 57.107 33.333 5.14 0.00 0.00 1.47
2669 2946 1.141019 GAGCCACGCCTACGATTGA 59.859 57.895 0.00 0.00 43.93 2.57
2671 2948 2.104331 CGAGCCACGCCTACGATT 59.896 61.111 0.00 0.00 43.93 3.34
2672 2949 3.138798 ACGAGCCACGCCTACGAT 61.139 61.111 0.00 0.00 46.94 3.73
2679 2956 4.681978 AGTTCCCACGAGCCACGC 62.682 66.667 0.00 0.00 46.94 5.34
2681 2958 3.050275 GCAGTTCCCACGAGCCAC 61.050 66.667 0.00 0.00 0.00 5.01
2682 2959 3.241530 AGCAGTTCCCACGAGCCA 61.242 61.111 0.00 0.00 31.37 4.75
2683 2960 2.743928 CAGCAGTTCCCACGAGCC 60.744 66.667 0.00 0.00 31.37 4.70
2684 2961 3.426568 GCAGCAGTTCCCACGAGC 61.427 66.667 0.00 0.00 0.00 5.03
2685 2962 1.572085 CTTGCAGCAGTTCCCACGAG 61.572 60.000 0.00 0.00 0.00 4.18
2686 2963 1.597854 CTTGCAGCAGTTCCCACGA 60.598 57.895 0.00 0.00 0.00 4.35
2687 2964 0.957395 ATCTTGCAGCAGTTCCCACG 60.957 55.000 0.00 0.00 0.00 4.94
2688 2965 0.807496 GATCTTGCAGCAGTTCCCAC 59.193 55.000 0.00 0.00 0.00 4.61
2695 2972 4.069300 TCATAAGGAGATCTTGCAGCAG 57.931 45.455 0.00 0.00 36.93 4.24
2726 3003 5.496387 CGAAAAGTTGCATCTACTATGCTG 58.504 41.667 10.95 0.00 44.79 4.41
2730 3007 5.730550 TGTCCGAAAAGTTGCATCTACTAT 58.269 37.500 0.00 0.00 0.00 2.12
2731 3008 5.142061 TGTCCGAAAAGTTGCATCTACTA 57.858 39.130 0.00 0.00 0.00 1.82
2732 3009 4.002906 TGTCCGAAAAGTTGCATCTACT 57.997 40.909 0.00 0.00 0.00 2.57
2733 3010 4.946784 ATGTCCGAAAAGTTGCATCTAC 57.053 40.909 0.00 0.00 0.00 2.59
2735 3012 3.689649 GGTATGTCCGAAAAGTTGCATCT 59.310 43.478 0.00 0.00 0.00 2.90
2736 3013 3.438781 TGGTATGTCCGAAAAGTTGCATC 59.561 43.478 0.00 0.00 39.52 3.91
2737 3014 3.417101 TGGTATGTCCGAAAAGTTGCAT 58.583 40.909 0.00 0.00 39.52 3.96
2738 3015 2.852449 TGGTATGTCCGAAAAGTTGCA 58.148 42.857 0.00 0.00 39.52 4.08
2739 3016 4.495844 GCTATGGTATGTCCGAAAAGTTGC 60.496 45.833 0.00 0.00 39.52 4.17
2740 3017 4.876107 AGCTATGGTATGTCCGAAAAGTTG 59.124 41.667 0.00 0.00 39.52 3.16
2741 3018 4.876107 CAGCTATGGTATGTCCGAAAAGTT 59.124 41.667 0.00 0.00 39.52 2.66
2742 3019 4.161565 TCAGCTATGGTATGTCCGAAAAGT 59.838 41.667 0.00 0.00 39.52 2.66
2743 3020 4.693283 TCAGCTATGGTATGTCCGAAAAG 58.307 43.478 0.00 0.00 39.52 2.27
2744 3021 4.746535 TCAGCTATGGTATGTCCGAAAA 57.253 40.909 0.00 0.00 39.52 2.29
2745 3022 4.631131 CATCAGCTATGGTATGTCCGAAA 58.369 43.478 0.00 0.00 39.52 3.46
2746 3023 4.257267 CATCAGCTATGGTATGTCCGAA 57.743 45.455 0.00 0.00 39.52 4.30
2747 3024 3.942130 CATCAGCTATGGTATGTCCGA 57.058 47.619 0.00 0.00 39.52 4.55
2757 3034 6.148480 GGTGCTTACTTATTCCATCAGCTATG 59.852 42.308 0.00 0.00 35.15 2.23
2758 3035 6.183361 TGGTGCTTACTTATTCCATCAGCTAT 60.183 38.462 0.00 0.00 0.00 2.97
2759 3036 5.130311 TGGTGCTTACTTATTCCATCAGCTA 59.870 40.000 0.00 0.00 0.00 3.32
2760 3037 4.080356 TGGTGCTTACTTATTCCATCAGCT 60.080 41.667 0.00 0.00 0.00 4.24
2761 3038 4.199310 TGGTGCTTACTTATTCCATCAGC 58.801 43.478 0.00 0.00 0.00 4.26
2762 3039 6.551385 GATGGTGCTTACTTATTCCATCAG 57.449 41.667 14.52 0.00 45.87 2.90
2764 3041 5.376625 TGGATGGTGCTTACTTATTCCATC 58.623 41.667 11.95 11.95 45.86 3.51
2765 3042 5.387113 TGGATGGTGCTTACTTATTCCAT 57.613 39.130 0.00 0.00 38.21 3.41
2766 3043 4.853468 TGGATGGTGCTTACTTATTCCA 57.147 40.909 0.00 0.00 0.00 3.53
2767 3044 4.338400 GGTTGGATGGTGCTTACTTATTCC 59.662 45.833 0.00 0.00 0.00 3.01
2768 3045 4.947388 TGGTTGGATGGTGCTTACTTATTC 59.053 41.667 0.00 0.00 0.00 1.75
2769 3046 4.929479 TGGTTGGATGGTGCTTACTTATT 58.071 39.130 0.00 0.00 0.00 1.40
2770 3047 4.018415 ACTGGTTGGATGGTGCTTACTTAT 60.018 41.667 0.00 0.00 0.00 1.73
2771 3048 3.329520 ACTGGTTGGATGGTGCTTACTTA 59.670 43.478 0.00 0.00 0.00 2.24
2772 3049 2.108250 ACTGGTTGGATGGTGCTTACTT 59.892 45.455 0.00 0.00 0.00 2.24
2773 3050 1.705186 ACTGGTTGGATGGTGCTTACT 59.295 47.619 0.00 0.00 0.00 2.24
2774 3051 1.812571 CACTGGTTGGATGGTGCTTAC 59.187 52.381 0.00 0.00 0.00 2.34
2775 3052 2.198827 CACTGGTTGGATGGTGCTTA 57.801 50.000 0.00 0.00 0.00 3.09
2776 3053 3.040965 CACTGGTTGGATGGTGCTT 57.959 52.632 0.00 0.00 0.00 3.91
2777 3054 4.828409 CACTGGTTGGATGGTGCT 57.172 55.556 0.00 0.00 0.00 4.40
2778 3055 2.964978 GCACTGGTTGGATGGTGC 59.035 61.111 0.00 0.00 45.93 5.01
2779 3056 0.540365 AAGGCACTGGTTGGATGGTG 60.540 55.000 0.00 0.00 40.86 4.17
2780 3057 0.540365 CAAGGCACTGGTTGGATGGT 60.540 55.000 0.00 0.00 40.86 3.55
2781 3058 1.880819 GCAAGGCACTGGTTGGATGG 61.881 60.000 0.00 0.00 40.86 3.51
2782 3059 1.588082 GCAAGGCACTGGTTGGATG 59.412 57.895 0.00 0.00 40.86 3.51
2783 3060 1.607467 GGCAAGGCACTGGTTGGAT 60.607 57.895 0.00 0.00 40.86 3.41
2784 3061 2.203480 GGCAAGGCACTGGTTGGA 60.203 61.111 0.00 0.00 40.86 3.53
2785 3062 3.305516 GGGCAAGGCACTGGTTGG 61.306 66.667 0.00 0.00 40.86 3.77
2786 3063 2.203538 AGGGCAAGGCACTGGTTG 60.204 61.111 0.00 0.00 42.58 3.77
2792 3069 1.598701 GATTCCACAGGGCAAGGCAC 61.599 60.000 0.00 0.00 0.00 5.01
2793 3070 1.304381 GATTCCACAGGGCAAGGCA 60.304 57.895 0.00 0.00 0.00 4.75
2800 3077 2.297895 TGTCCCCGATTCCACAGGG 61.298 63.158 0.00 0.00 44.67 4.45
2802 3079 0.108138 GAGTGTCCCCGATTCCACAG 60.108 60.000 0.00 0.00 0.00 3.66
2811 3088 4.919653 CTCACATGAGTGTCCCCG 57.080 61.111 0.00 0.00 46.01 5.73
2830 3109 1.226746 GTTGGCACCACAGAGTACAC 58.773 55.000 0.00 0.00 0.00 2.90
2863 3142 5.334724 GCTGGAGTCTGACAAAAAGATCAAG 60.335 44.000 10.88 1.16 0.00 3.02
2872 3155 0.033504 GGTCGCTGGAGTCTGACAAA 59.966 55.000 10.88 0.00 33.04 2.83
2879 3162 2.179517 CGACAGGTCGCTGGAGTC 59.820 66.667 9.05 0.00 46.50 3.36
2888 3171 1.446099 TCATTGCGAGCGACAGGTC 60.446 57.895 0.00 0.00 41.20 3.85
2889 3172 1.738099 GTCATTGCGAGCGACAGGT 60.738 57.895 0.00 0.00 0.00 4.00
2890 3173 1.737735 TGTCATTGCGAGCGACAGG 60.738 57.895 5.13 0.00 34.83 4.00
2891 3174 3.860717 TGTCATTGCGAGCGACAG 58.139 55.556 5.13 0.00 34.83 3.51
2892 3175 2.382746 GCTGTCATTGCGAGCGACA 61.383 57.895 8.34 8.34 37.33 4.35
2893 3176 2.097038 AGCTGTCATTGCGAGCGAC 61.097 57.895 0.00 0.24 37.81 5.19
2894 3177 2.096442 CAGCTGTCATTGCGAGCGA 61.096 57.895 5.25 0.00 37.81 4.93
2895 3178 2.398429 CAGCTGTCATTGCGAGCG 59.602 61.111 5.25 0.00 37.81 5.03
2896 3179 2.099831 GCAGCTGTCATTGCGAGC 59.900 61.111 16.64 0.00 35.28 5.03
2897 3180 1.424240 CAGCAGCTGTCATTGCGAG 59.576 57.895 16.64 0.00 44.80 5.03
2898 3181 2.036571 CCAGCAGCTGTCATTGCGA 61.037 57.895 21.26 0.00 44.80 5.10
2899 3182 1.859427 AACCAGCAGCTGTCATTGCG 61.859 55.000 21.26 6.35 44.80 4.85
2900 3183 0.388134 CAACCAGCAGCTGTCATTGC 60.388 55.000 21.26 0.00 40.57 3.56
2901 3184 0.242825 CCAACCAGCAGCTGTCATTG 59.757 55.000 21.26 19.43 0.00 2.82
2902 3185 0.178981 ACCAACCAGCAGCTGTCATT 60.179 50.000 21.26 9.54 0.00 2.57
2903 3186 0.607489 GACCAACCAGCAGCTGTCAT 60.607 55.000 21.26 3.45 0.00 3.06
2904 3187 1.227943 GACCAACCAGCAGCTGTCA 60.228 57.895 21.26 0.00 0.00 3.58
2905 3188 2.320587 CGACCAACCAGCAGCTGTC 61.321 63.158 21.26 10.45 0.00 3.51
2906 3189 2.281070 CGACCAACCAGCAGCTGT 60.281 61.111 21.26 6.66 0.00 4.40
2907 3190 2.281070 ACGACCAACCAGCAGCTG 60.281 61.111 16.23 16.23 0.00 4.24
2908 3191 2.281070 CACGACCAACCAGCAGCT 60.281 61.111 0.00 0.00 0.00 4.24
2909 3192 2.591715 ACACGACCAACCAGCAGC 60.592 61.111 0.00 0.00 0.00 5.25
2910 3193 2.310233 CGACACGACCAACCAGCAG 61.310 63.158 0.00 0.00 0.00 4.24
2911 3194 2.279851 CGACACGACCAACCAGCA 60.280 61.111 0.00 0.00 0.00 4.41
2912 3195 2.279918 ACGACACGACCAACCAGC 60.280 61.111 0.00 0.00 0.00 4.85
2913 3196 2.594962 GCACGACACGACCAACCAG 61.595 63.158 0.00 0.00 0.00 4.00
2914 3197 2.586635 GCACGACACGACCAACCA 60.587 61.111 0.00 0.00 0.00 3.67
2915 3198 3.343421 GGCACGACACGACCAACC 61.343 66.667 0.00 0.00 0.00 3.77
2928 3211 0.109597 CAGCTCCATTTTCACGGCAC 60.110 55.000 0.00 0.00 0.00 5.01
2933 3216 0.244721 GGTGCCAGCTCCATTTTCAC 59.755 55.000 5.88 0.00 0.00 3.18
2934 3217 1.243342 CGGTGCCAGCTCCATTTTCA 61.243 55.000 11.03 0.00 0.00 2.69
2938 3221 4.431131 CCCGGTGCCAGCTCCATT 62.431 66.667 11.03 0.00 0.00 3.16
2955 3238 4.388499 TTCTTCGCTGGCCCGTCC 62.388 66.667 0.00 0.00 0.00 4.79
2956 3239 3.119096 GTTCTTCGCTGGCCCGTC 61.119 66.667 0.00 0.00 0.00 4.79
2957 3240 3.254024 ATGTTCTTCGCTGGCCCGT 62.254 57.895 0.00 0.00 0.00 5.28
2958 3241 2.436646 ATGTTCTTCGCTGGCCCG 60.437 61.111 0.00 0.00 0.00 6.13
2959 3242 2.464459 CGATGTTCTTCGCTGGCCC 61.464 63.158 0.00 0.00 31.60 5.80
2960 3243 2.464459 CCGATGTTCTTCGCTGGCC 61.464 63.158 0.00 0.00 37.80 5.36
2965 3248 2.538939 GGTATTTGCCGATGTTCTTCGC 60.539 50.000 3.19 0.00 37.80 4.70
2983 3266 4.998672 CCGGTAAACATCAAAGTTCAGGTA 59.001 41.667 0.00 0.00 0.00 3.08
2988 3271 4.907582 CGAAACCGGTAAACATCAAAGTTC 59.092 41.667 8.00 1.93 0.00 3.01
2990 3273 4.128643 TCGAAACCGGTAAACATCAAAGT 58.871 39.130 8.00 0.00 0.00 2.66
2998 3281 4.996062 TCTGAAATCGAAACCGGTAAAC 57.004 40.909 8.00 0.93 0.00 2.01
2999 3282 5.581874 GGTATCTGAAATCGAAACCGGTAAA 59.418 40.000 8.00 0.00 0.00 2.01
3000 3283 5.111293 GGTATCTGAAATCGAAACCGGTAA 58.889 41.667 8.00 0.00 0.00 2.85
3002 3285 3.528532 GGTATCTGAAATCGAAACCGGT 58.471 45.455 0.00 0.00 0.00 5.28
3003 3286 2.538449 CGGTATCTGAAATCGAAACCGG 59.462 50.000 0.00 0.00 43.45 5.28
3004 3287 2.538449 CCGGTATCTGAAATCGAAACCG 59.462 50.000 4.10 4.10 45.96 4.44
3005 3288 2.870411 CCCGGTATCTGAAATCGAAACC 59.130 50.000 0.00 0.00 0.00 3.27
3007 3290 4.475051 TTCCCGGTATCTGAAATCGAAA 57.525 40.909 0.00 0.00 0.00 3.46
3008 3291 4.377021 CATTCCCGGTATCTGAAATCGAA 58.623 43.478 0.00 0.00 0.00 3.71
3009 3292 3.244078 CCATTCCCGGTATCTGAAATCGA 60.244 47.826 0.00 0.00 0.00 3.59
3017 3300 3.112263 TCAAGTTCCATTCCCGGTATCT 58.888 45.455 0.00 0.00 0.00 1.98
3018 3301 3.553828 TCAAGTTCCATTCCCGGTATC 57.446 47.619 0.00 0.00 0.00 2.24
3023 3306 3.065371 GCTTACATCAAGTTCCATTCCCG 59.935 47.826 0.00 0.00 36.55 5.14
3045 3328 1.526917 GACATTCTGGGGCCGATGG 60.527 63.158 0.00 0.00 0.00 3.51
3049 3332 0.533755 GATCAGACATTCTGGGGCCG 60.534 60.000 0.00 0.00 44.39 6.13
3098 3381 0.881118 TTGACCCGAAATGCTCAAGC 59.119 50.000 0.00 0.00 42.50 4.01
3143 3427 0.392998 AGCATAGGCCCAACGAGTTG 60.393 55.000 0.00 8.87 42.56 3.16
3148 3432 1.066002 CAATCAAGCATAGGCCCAACG 59.934 52.381 0.00 0.00 42.56 4.10
3154 3438 4.082571 AGTTGACAACAATCAAGCATAGGC 60.083 41.667 20.08 0.00 39.25 3.93
3155 3439 5.633830 AGTTGACAACAATCAAGCATAGG 57.366 39.130 20.08 0.00 39.25 2.57
3156 3440 6.361481 CACAAGTTGACAACAATCAAGCATAG 59.639 38.462 20.08 0.00 39.25 2.23
3157 3441 6.039159 TCACAAGTTGACAACAATCAAGCATA 59.961 34.615 20.08 0.00 39.25 3.14
3158 3442 5.045215 CACAAGTTGACAACAATCAAGCAT 58.955 37.500 20.08 0.00 39.25 3.79
3159 3443 4.157472 TCACAAGTTGACAACAATCAAGCA 59.843 37.500 20.08 0.00 39.25 3.91
3176 3472 5.006386 ACCTTGAGCTATTTCCTTCACAAG 58.994 41.667 0.00 0.00 35.01 3.16
3177 3473 4.761739 CACCTTGAGCTATTTCCTTCACAA 59.238 41.667 0.00 0.00 0.00 3.33
3178 3474 4.202461 ACACCTTGAGCTATTTCCTTCACA 60.202 41.667 0.00 0.00 0.00 3.58
3179 3475 4.327680 ACACCTTGAGCTATTTCCTTCAC 58.672 43.478 0.00 0.00 0.00 3.18
3180 3476 4.579869 GACACCTTGAGCTATTTCCTTCA 58.420 43.478 0.00 0.00 0.00 3.02
3181 3477 3.619038 CGACACCTTGAGCTATTTCCTTC 59.381 47.826 0.00 0.00 0.00 3.46
3202 3498 2.653890 CAAGAAACATGGCAGACAACG 58.346 47.619 0.00 0.00 0.00 4.10
3204 3500 1.340889 GGCAAGAAACATGGCAGACAA 59.659 47.619 0.00 0.00 42.45 3.18
3208 3504 2.825861 AAAGGCAAGAAACATGGCAG 57.174 45.000 0.00 0.00 45.08 4.85
3210 3506 2.416747 GGAAAAGGCAAGAAACATGGC 58.583 47.619 0.00 0.00 43.17 4.40
3224 3520 1.537202 CTGGCCAGAGAAACGGAAAAG 59.463 52.381 29.88 0.00 0.00 2.27
3227 3523 1.125093 TCCTGGCCAGAGAAACGGAA 61.125 55.000 34.91 3.80 0.00 4.30
3228 3524 0.909610 ATCCTGGCCAGAGAAACGGA 60.910 55.000 34.91 21.78 0.00 4.69
3229 3525 0.745845 CATCCTGGCCAGAGAAACGG 60.746 60.000 34.91 16.71 0.00 4.44
3237 3533 1.818674 GTAACAAACCATCCTGGCCAG 59.181 52.381 26.87 26.87 42.67 4.85
3238 3534 1.884497 CGTAACAAACCATCCTGGCCA 60.884 52.381 4.71 4.71 42.67 5.36
3239 3535 0.808755 CGTAACAAACCATCCTGGCC 59.191 55.000 0.00 0.00 42.67 5.36
3249 3545 3.472431 GCGTGGAACATACGTAACAAAC 58.528 45.455 0.00 0.00 44.52 2.93
3253 3549 1.580704 CTCGCGTGGAACATACGTAAC 59.419 52.381 5.77 0.00 44.52 2.50
3256 3552 1.153901 CCTCGCGTGGAACATACGT 60.154 57.895 22.35 0.00 44.52 3.57
3257 3553 2.514013 GCCTCGCGTGGAACATACG 61.514 63.158 30.07 1.95 44.52 3.06
3262 4834 3.119096 GAAGGCCTCGCGTGGAAC 61.119 66.667 30.07 20.47 0.00 3.62
3291 4863 1.066143 AGGAGCAACAGTAATCGGGTG 60.066 52.381 0.00 0.00 0.00 4.61
3295 4867 2.386661 ACCAGGAGCAACAGTAATCG 57.613 50.000 0.00 0.00 0.00 3.34
3311 4906 5.290493 ACCGATGCTAAAATCAGATACCA 57.710 39.130 0.00 0.00 0.00 3.25
3328 4923 4.142773 CCGTGCACAGTAAATAAAACCGAT 60.143 41.667 18.64 0.00 0.00 4.18
3429 5024 5.104569 AGGGAAATGCAAAACAAAAAGGAGA 60.105 36.000 0.00 0.00 0.00 3.71
3432 5027 5.589855 AGAAGGGAAATGCAAAACAAAAAGG 59.410 36.000 0.00 0.00 0.00 3.11
3439 5034 4.607293 AAGGAGAAGGGAAATGCAAAAC 57.393 40.909 0.00 0.00 0.00 2.43
3443 5038 4.998051 ACTAAAAGGAGAAGGGAAATGCA 58.002 39.130 0.00 0.00 0.00 3.96
3445 5040 9.025041 ACAAATACTAAAAGGAGAAGGGAAATG 57.975 33.333 0.00 0.00 0.00 2.32
3502 5097 8.757164 TGCTGATTACTCATTTATATGGTACG 57.243 34.615 0.00 0.00 32.40 3.67
3534 5133 9.915629 ACCGCAAGACAATAATAACAAATTAAA 57.084 25.926 0.00 0.00 43.02 1.52
3542 5141 3.691498 GCCACCGCAAGACAATAATAAC 58.309 45.455 0.00 0.00 43.02 1.89
3558 5157 3.508840 GCATGTAGCACCGCCACC 61.509 66.667 0.00 0.00 44.79 4.61
3567 5166 3.429543 CACCACAAAAACATGCATGTAGC 59.570 43.478 31.55 0.00 40.80 3.58
3592 5192 1.470098 CGCATCCAAGTTGAAGGAAGG 59.530 52.381 3.87 0.00 37.48 3.46
3593 5193 2.426522 TCGCATCCAAGTTGAAGGAAG 58.573 47.619 3.87 0.00 37.48 3.46
3594 5194 2.559698 TCGCATCCAAGTTGAAGGAA 57.440 45.000 3.87 0.00 37.48 3.36
3595 5195 2.559698 TTCGCATCCAAGTTGAAGGA 57.440 45.000 3.87 0.00 38.50 3.36
3596 5196 3.855689 ATTTCGCATCCAAGTTGAAGG 57.144 42.857 3.87 0.00 0.00 3.46
3597 5197 5.447818 GGAGTATTTCGCATCCAAGTTGAAG 60.448 44.000 3.87 0.00 0.00 3.02
3598 5198 4.394920 GGAGTATTTCGCATCCAAGTTGAA 59.605 41.667 3.87 0.00 0.00 2.69
3599 5199 3.938963 GGAGTATTTCGCATCCAAGTTGA 59.061 43.478 3.87 0.00 0.00 3.18
3600 5200 3.065371 GGGAGTATTTCGCATCCAAGTTG 59.935 47.826 0.00 0.00 38.55 3.16
3601 5201 3.054361 AGGGAGTATTTCGCATCCAAGTT 60.054 43.478 0.00 0.00 41.01 2.66
3602 5202 2.505819 AGGGAGTATTTCGCATCCAAGT 59.494 45.455 0.00 0.00 41.01 3.16
3603 5203 3.134458 GAGGGAGTATTTCGCATCCAAG 58.866 50.000 0.00 0.00 41.01 3.61
3604 5204 2.771943 AGAGGGAGTATTTCGCATCCAA 59.228 45.455 0.00 0.00 41.01 3.53
3605 5205 2.103094 CAGAGGGAGTATTTCGCATCCA 59.897 50.000 0.00 0.00 41.01 3.41
3606 5206 2.103263 ACAGAGGGAGTATTTCGCATCC 59.897 50.000 0.00 0.00 41.01 3.51
3607 5207 3.385577 GACAGAGGGAGTATTTCGCATC 58.614 50.000 0.00 0.00 41.01 3.91
3608 5208 2.103263 GGACAGAGGGAGTATTTCGCAT 59.897 50.000 0.00 0.00 41.01 4.73
3609 5209 1.480954 GGACAGAGGGAGTATTTCGCA 59.519 52.381 0.00 0.00 41.01 5.10
3610 5210 1.202545 GGGACAGAGGGAGTATTTCGC 60.203 57.143 0.00 0.00 38.95 4.70
3611 5211 2.108168 TGGGACAGAGGGAGTATTTCG 58.892 52.381 0.00 0.00 0.00 3.46
3612 5212 4.569719 TTTGGGACAGAGGGAGTATTTC 57.430 45.455 0.00 0.00 42.39 2.17
3613 5213 5.536497 ATTTTGGGACAGAGGGAGTATTT 57.464 39.130 0.00 0.00 42.39 1.40
3614 5214 5.536497 AATTTTGGGACAGAGGGAGTATT 57.464 39.130 0.00 0.00 42.39 1.89
3615 5215 6.848562 ATAATTTTGGGACAGAGGGAGTAT 57.151 37.500 0.00 0.00 42.39 2.12
3616 5216 6.011981 ACAATAATTTTGGGACAGAGGGAGTA 60.012 38.462 0.00 0.00 42.39 2.59
3617 5217 5.222337 ACAATAATTTTGGGACAGAGGGAGT 60.222 40.000 0.00 0.00 42.39 3.85
3618 5218 5.264395 ACAATAATTTTGGGACAGAGGGAG 58.736 41.667 0.00 0.00 42.39 4.30
3619 5219 5.015178 AGACAATAATTTTGGGACAGAGGGA 59.985 40.000 0.00 0.00 42.39 4.20
3620 5220 5.264395 AGACAATAATTTTGGGACAGAGGG 58.736 41.667 0.00 0.00 42.39 4.30
3621 5221 6.840780 AAGACAATAATTTTGGGACAGAGG 57.159 37.500 0.00 0.00 42.39 3.69
3622 5222 8.792830 TCTAAGACAATAATTTTGGGACAGAG 57.207 34.615 0.00 0.00 42.39 3.35
3623 5223 9.753674 AATCTAAGACAATAATTTTGGGACAGA 57.246 29.630 0.00 0.00 42.39 3.41
3626 5226 9.087424 GCAAATCTAAGACAATAATTTTGGGAC 57.913 33.333 0.00 0.00 0.00 4.46
3627 5227 8.257306 GGCAAATCTAAGACAATAATTTTGGGA 58.743 33.333 0.00 0.00 0.00 4.37
3628 5228 8.260114 AGGCAAATCTAAGACAATAATTTTGGG 58.740 33.333 0.00 0.00 0.00 4.12
3637 5237 8.928448 TCTGTATCTAGGCAAATCTAAGACAAT 58.072 33.333 0.00 0.00 0.00 2.71
3638 5238 8.306313 TCTGTATCTAGGCAAATCTAAGACAA 57.694 34.615 0.00 0.00 0.00 3.18
3639 5239 7.898014 TCTGTATCTAGGCAAATCTAAGACA 57.102 36.000 0.00 0.00 0.00 3.41
3640 5240 8.364142 ACATCTGTATCTAGGCAAATCTAAGAC 58.636 37.037 0.00 0.00 0.00 3.01
3641 5241 8.484214 ACATCTGTATCTAGGCAAATCTAAGA 57.516 34.615 0.00 0.00 0.00 2.10
3673 5273 9.996554 ACGGATGTATCAGATCATGTTTTAATA 57.003 29.630 0.00 0.00 0.00 0.98
3674 5274 8.908786 ACGGATGTATCAGATCATGTTTTAAT 57.091 30.769 0.00 0.00 0.00 1.40
3675 5275 9.996554 ATACGGATGTATCAGATCATGTTTTAA 57.003 29.630 0.00 0.00 36.56 1.52
3676 5276 9.996554 AATACGGATGTATCAGATCATGTTTTA 57.003 29.630 0.00 0.00 40.42 1.52
3677 5277 8.908786 AATACGGATGTATCAGATCATGTTTT 57.091 30.769 0.00 0.00 40.42 2.43
3678 5278 8.908786 AAATACGGATGTATCAGATCATGTTT 57.091 30.769 0.00 0.00 40.42 2.83
3679 5279 9.645059 CTAAATACGGATGTATCAGATCATGTT 57.355 33.333 0.00 0.00 40.42 2.71
3680 5280 9.025041 TCTAAATACGGATGTATCAGATCATGT 57.975 33.333 0.00 0.00 40.42 3.21
3681 5281 9.295214 GTCTAAATACGGATGTATCAGATCATG 57.705 37.037 0.00 0.00 40.42 3.07
3682 5282 9.025041 TGTCTAAATACGGATGTATCAGATCAT 57.975 33.333 0.00 0.00 40.42 2.45
3683 5283 8.404107 TGTCTAAATACGGATGTATCAGATCA 57.596 34.615 0.00 0.00 40.42 2.92
3684 5284 9.692749 TTTGTCTAAATACGGATGTATCAGATC 57.307 33.333 0.00 0.00 40.42 2.75
3704 5304 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
3705 5305 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
3706 5306 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
3707 5307 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
3708 5308 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
3709 5309 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3710 5310 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
3711 5311 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
3712 5312 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
3713 5313 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3714 5314 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3715 5315 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3716 5316 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3717 5317 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
3718 5318 2.790433 TCCTCCGTCCCAAAATTCTTG 58.210 47.619 0.00 0.00 0.00 3.02
3719 5319 3.518992 TTCCTCCGTCCCAAAATTCTT 57.481 42.857 0.00 0.00 0.00 2.52
3720 5320 3.739401 ATTCCTCCGTCCCAAAATTCT 57.261 42.857 0.00 0.00 0.00 2.40
3721 5321 4.524053 ACTATTCCTCCGTCCCAAAATTC 58.476 43.478 0.00 0.00 0.00 2.17
3722 5322 4.586306 ACTATTCCTCCGTCCCAAAATT 57.414 40.909 0.00 0.00 0.00 1.82
3723 5323 4.720273 AGTACTATTCCTCCGTCCCAAAAT 59.280 41.667 0.00 0.00 0.00 1.82
3724 5324 4.098894 AGTACTATTCCTCCGTCCCAAAA 58.901 43.478 0.00 0.00 0.00 2.44
3725 5325 3.716431 AGTACTATTCCTCCGTCCCAAA 58.284 45.455 0.00 0.00 0.00 3.28
3726 5326 3.393426 AGTACTATTCCTCCGTCCCAA 57.607 47.619 0.00 0.00 0.00 4.12
3727 5327 4.524802 TTAGTACTATTCCTCCGTCCCA 57.475 45.455 2.79 0.00 0.00 4.37
3728 5328 5.075493 TGATTAGTACTATTCCTCCGTCCC 58.925 45.833 17.86 0.00 0.00 4.46
3729 5329 5.335819 GCTGATTAGTACTATTCCTCCGTCC 60.336 48.000 17.86 0.00 0.00 4.79
3730 5330 5.474189 AGCTGATTAGTACTATTCCTCCGTC 59.526 44.000 17.86 5.31 0.00 4.79
3731 5331 5.386924 AGCTGATTAGTACTATTCCTCCGT 58.613 41.667 17.86 1.43 0.00 4.69
3732 5332 5.968528 AGCTGATTAGTACTATTCCTCCG 57.031 43.478 17.86 8.34 0.00 4.63
3733 5333 8.411991 AGTAAGCTGATTAGTACTATTCCTCC 57.588 38.462 17.86 9.11 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.