Multiple sequence alignment - TraesCS5A01G359400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G359400 chr5A 100.000 5572 0 0 1 5572 561449493 561455064 0.000000e+00 10290.0
1 TraesCS5A01G359400 chr5A 85.150 1064 134 10 3545 4585 561517174 561518236 0.000000e+00 1068.0
2 TraesCS5A01G359400 chr5A 80.038 1047 178 20 3471 4497 561524104 561525139 0.000000e+00 747.0
3 TraesCS5A01G359400 chr5A 78.645 1063 196 20 3544 4580 561168247 561169304 0.000000e+00 676.0
4 TraesCS5A01G359400 chr5A 81.124 747 98 20 3472 4199 561506020 561506742 4.880000e-155 558.0
5 TraesCS5A01G359400 chr5A 78.273 741 86 36 2103 2803 561505199 561505904 1.870000e-109 407.0
6 TraesCS5A01G359400 chr5A 77.413 518 78 14 2282 2769 561267197 561267705 7.110000e-69 272.0
7 TraesCS5A01G359400 chr5A 84.831 178 18 6 4812 4988 561518656 561518825 2.670000e-38 171.0
8 TraesCS5A01G359400 chr5A 75.926 324 44 21 4665 4986 561530652 561530943 9.740000e-28 135.0
9 TraesCS5A01G359400 chr5A 85.484 124 10 8 1024 1140 561521963 561522085 7.580000e-24 122.0
10 TraesCS5A01G359400 chr5A 93.976 83 2 1 1059 1138 561980440 561980358 7.580000e-24 122.0
11 TraesCS5A01G359400 chr5A 89.773 88 9 0 1051 1138 561166078 561166165 4.560000e-21 113.0
12 TraesCS5A01G359400 chr5A 81.699 153 11 9 4507 4652 561530404 561530546 1.640000e-20 111.0
13 TraesCS5A01G359400 chr5A 83.200 125 13 5 2 118 139936122 139935998 2.120000e-19 108.0
14 TraesCS5A01G359400 chr5A 100.000 30 0 0 5065 5094 561518880 561518909 7.800000e-04 56.5
15 TraesCS5A01G359400 chr5B 93.178 1847 78 14 3456 5267 541302361 541304194 0.000000e+00 2669.0
16 TraesCS5A01G359400 chr5B 87.855 1375 113 28 2101 3428 541300348 541301715 0.000000e+00 1565.0
17 TraesCS5A01G359400 chr5B 92.393 1078 64 14 151 1220 541297216 541298283 0.000000e+00 1520.0
18 TraesCS5A01G359400 chr5B 87.086 875 88 11 3545 4396 541305565 541306437 0.000000e+00 966.0
19 TraesCS5A01G359400 chr5B 79.074 1209 206 30 3471 4652 541339620 541340808 0.000000e+00 787.0
20 TraesCS5A01G359400 chr5B 78.610 748 120 21 2101 2813 541099398 541100140 5.090000e-125 459.0
21 TraesCS5A01G359400 chr5B 86.648 352 26 6 1299 1642 541298319 541298657 2.450000e-98 370.0
22 TraesCS5A01G359400 chr5B 81.064 470 61 16 2418 2878 541157687 541158137 3.190000e-92 350.0
23 TraesCS5A01G359400 chr5B 91.489 188 13 3 5335 5519 541304209 541304396 7.160000e-64 255.0
24 TraesCS5A01G359400 chr5B 92.135 89 3 2 1053 1138 541956056 541955969 7.580000e-24 122.0
25 TraesCS5A01G359400 chr5B 88.421 95 10 1 1044 1138 541085754 541085847 4.560000e-21 113.0
26 TraesCS5A01G359400 chr5D 92.157 1836 83 11 3467 5264 444532298 444534110 0.000000e+00 2536.0
27 TraesCS5A01G359400 chr5D 89.394 990 65 17 2101 3074 444530815 444531780 0.000000e+00 1210.0
28 TraesCS5A01G359400 chr5D 84.854 1063 122 11 3545 4585 444536584 444537629 0.000000e+00 1035.0
29 TraesCS5A01G359400 chr5D 94.295 631 28 4 594 1223 444529575 444530198 0.000000e+00 959.0
30 TraesCS5A01G359400 chr5D 90.199 602 35 12 1 593 444527568 444528154 0.000000e+00 763.0
31 TraesCS5A01G359400 chr5D 79.417 1064 188 20 3544 4581 444302257 444303315 0.000000e+00 723.0
32 TraesCS5A01G359400 chr5D 88.361 610 38 12 1276 1870 444530221 444530812 0.000000e+00 702.0
33 TraesCS5A01G359400 chr5D 78.714 1104 152 46 3949 5011 444545754 444546815 0.000000e+00 660.0
34 TraesCS5A01G359400 chr5D 80.052 772 112 22 3473 4206 444311687 444312454 8.220000e-148 534.0
35 TraesCS5A01G359400 chr5D 78.331 743 119 21 2104 2813 444348458 444349191 5.120000e-120 442.0
36 TraesCS5A01G359400 chr5D 78.393 560 86 23 2353 2889 444354782 444355329 1.160000e-86 331.0
37 TraesCS5A01G359400 chr5D 80.672 357 56 8 2418 2769 444475648 444475996 1.190000e-66 265.0
38 TraesCS5A01G359400 chr5D 85.635 181 22 4 4810 4988 444538041 444538219 2.650000e-43 187.0
39 TraesCS5A01G359400 chr5D 90.476 126 11 1 5335 5459 444534128 444534253 1.240000e-36 165.0
40 TraesCS5A01G359400 chr5D 84.444 135 20 1 1961 2095 434423394 434423261 1.260000e-26 132.0
41 TraesCS5A01G359400 chr5D 94.048 84 5 0 1057 1140 444542521 444542604 1.630000e-25 128.0
42 TraesCS5A01G359400 chr5D 89.773 88 9 0 1051 1138 444300055 444300142 4.560000e-21 113.0
43 TraesCS5A01G359400 chr5D 83.908 87 9 3 4665 4751 444303432 444303513 1.660000e-10 78.7
44 TraesCS5A01G359400 chr5D 100.000 30 0 0 5065 5094 444538274 444538303 7.800000e-04 56.5
45 TraesCS5A01G359400 chr5D 100.000 30 0 0 5065 5094 444546817 444546846 7.800000e-04 56.5
46 TraesCS5A01G359400 chr6D 80.844 616 98 10 3544 4140 28852430 28853044 3.040000e-127 466.0
47 TraesCS5A01G359400 chr6D 84.375 224 33 2 1872 2095 291421 291200 9.400000e-53 219.0
48 TraesCS5A01G359400 chr2B 87.293 181 17 4 1919 2096 42619985 42619808 9.470000e-48 202.0
49 TraesCS5A01G359400 chr2B 88.983 118 13 0 1936 2053 66025369 66025486 4.500000e-31 147.0
50 TraesCS5A01G359400 chr2B 87.719 114 8 3 2 109 31065524 31065637 1.630000e-25 128.0
51 TraesCS5A01G359400 chr2B 85.088 114 11 2 2 109 401283050 401282937 1.640000e-20 111.0
52 TraesCS5A01G359400 chr2B 90.909 66 6 0 2031 2096 707783677 707783612 7.690000e-14 89.8
53 TraesCS5A01G359400 chr3A 82.192 219 34 5 1877 2092 25149754 25149970 3.430000e-42 183.0
54 TraesCS5A01G359400 chr3A 83.598 189 30 1 1904 2092 564424475 564424662 5.740000e-40 176.0
55 TraesCS5A01G359400 chr7D 81.696 224 36 4 1876 2096 575342127 575342348 1.230000e-41 182.0
56 TraesCS5A01G359400 chr7D 79.825 228 39 6 1872 2096 69444218 69444441 5.780000e-35 159.0
57 TraesCS5A01G359400 chr7B 88.793 116 7 2 2 111 745254717 745254832 2.710000e-28 137.0
58 TraesCS5A01G359400 chr1D 87.931 116 8 2 2 111 69194012 69193897 1.260000e-26 132.0
59 TraesCS5A01G359400 chr1D 90.476 84 8 0 2009 2092 493992446 493992529 1.640000e-20 111.0
60 TraesCS5A01G359400 chr4B 86.667 120 10 2 2 115 183515950 183515831 1.630000e-25 128.0
61 TraesCS5A01G359400 chr4B 84.167 120 13 2 2 115 523951451 523951332 1.640000e-20 111.0
62 TraesCS5A01G359400 chr1A 84.000 125 18 2 2 124 567519580 567519456 9.810000e-23 119.0
63 TraesCS5A01G359400 chr2A 89.394 66 7 0 2031 2096 721018950 721018885 3.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G359400 chr5A 561449493 561455064 5571 False 10290.000000 10290 100.000000 1 5572 1 chr5A.!!$F2 5571
1 TraesCS5A01G359400 chr5A 561505199 561506742 1543 False 482.500000 558 79.698500 2103 4199 2 chr5A.!!$F4 2096
2 TraesCS5A01G359400 chr5A 561517174 561525139 7965 False 432.900000 1068 87.100600 1024 5094 5 chr5A.!!$F5 4070
3 TraesCS5A01G359400 chr5A 561166078 561169304 3226 False 394.500000 676 84.209000 1051 4580 2 chr5A.!!$F3 3529
4 TraesCS5A01G359400 chr5A 561267197 561267705 508 False 272.000000 272 77.413000 2282 2769 1 chr5A.!!$F1 487
5 TraesCS5A01G359400 chr5B 541297216 541306437 9221 False 1224.166667 2669 89.774833 151 5519 6 chr5B.!!$F5 5368
6 TraesCS5A01G359400 chr5B 541339620 541340808 1188 False 787.000000 787 79.074000 3471 4652 1 chr5B.!!$F4 1181
7 TraesCS5A01G359400 chr5B 541099398 541100140 742 False 459.000000 459 78.610000 2101 2813 1 chr5B.!!$F2 712
8 TraesCS5A01G359400 chr5D 444527568 444538303 10735 False 845.944444 2536 90.596778 1 5459 9 chr5D.!!$F6 5458
9 TraesCS5A01G359400 chr5D 444311687 444312454 767 False 534.000000 534 80.052000 3473 4206 1 chr5D.!!$F1 733
10 TraesCS5A01G359400 chr5D 444348458 444349191 733 False 442.000000 442 78.331000 2104 2813 1 chr5D.!!$F2 709
11 TraesCS5A01G359400 chr5D 444354782 444355329 547 False 331.000000 331 78.393000 2353 2889 1 chr5D.!!$F3 536
12 TraesCS5A01G359400 chr5D 444300055 444303513 3458 False 304.900000 723 84.366000 1051 4751 3 chr5D.!!$F5 3700
13 TraesCS5A01G359400 chr5D 444542521 444546846 4325 False 281.500000 660 90.920667 1057 5094 3 chr5D.!!$F7 4037
14 TraesCS5A01G359400 chr6D 28852430 28853044 614 False 466.000000 466 80.844000 3544 4140 1 chr6D.!!$F1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 2252 3.947834 ACCAAACTTTCAGAGACTTGGTG 59.052 43.478 12.90 0.00 45.20 4.17 F
1890 8661 0.240411 GACAGTGTAGTTCGCCGAGT 59.760 55.000 0.00 0.00 0.00 4.18 F
2007 8778 0.039074 CCGAATACAGAGCGCCTAGG 60.039 60.000 2.29 3.67 0.00 3.02 F
2027 8798 0.320374 TCGGCACTCGGTGAAGATTT 59.680 50.000 8.04 0.00 39.77 2.17 F
2081 8852 0.387565 TGAAACTCGGCAAAAAGGGC 59.612 50.000 0.00 0.00 0.00 5.19 F
2471 9368 1.014044 GTTCAGTGATTCTCGCCGCA 61.014 55.000 0.00 0.00 0.00 5.69 F
4144 11957 1.086696 CTTCCAATGGTGCCACTACG 58.913 55.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 8759 0.039074 CCTAGGCGCTCTGTATTCGG 60.039 60.0 7.64 0.0 0.00 4.30 R
2926 9910 1.402787 CCTTTGCAACTGAAGGGTGT 58.597 50.0 0.00 0.0 38.98 4.16 R
3448 11054 2.099263 GTGGTATGCTTCAGTCTAGCGA 59.901 50.0 0.00 0.0 41.54 4.93 R
4011 11824 1.863155 GCAACCCCAGGGAGATTCCA 61.863 60.0 7.25 0.0 38.64 3.53 R
4144 11957 0.378257 CACATTGGTCATGCTACGCC 59.622 55.0 0.00 0.0 36.14 5.68 R
4456 12274 0.314935 ACTGCATCCAAAACCTTGCG 59.685 50.0 0.00 0.0 37.92 4.85 R
5338 13212 0.039035 TGGGTGGGTTTGCTACATCC 59.961 55.0 0.00 0.0 35.93 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 111 5.805486 TCGACAATTATTTTCAGACGGAGAG 59.195 40.000 0.00 0.00 0.00 3.20
112 119 8.703604 TTATTTTCAGACGGAGAGAGTATTTG 57.296 34.615 0.00 0.00 0.00 2.32
118 125 7.258441 TCAGACGGAGAGAGTATTTGTTATTG 58.742 38.462 0.00 0.00 0.00 1.90
119 126 7.122204 TCAGACGGAGAGAGTATTTGTTATTGA 59.878 37.037 0.00 0.00 0.00 2.57
120 127 7.221067 CAGACGGAGAGAGTATTTGTTATTGAC 59.779 40.741 0.00 0.00 0.00 3.18
121 128 7.122948 AGACGGAGAGAGTATTTGTTATTGACT 59.877 37.037 0.00 0.00 0.00 3.41
122 129 7.612677 ACGGAGAGAGTATTTGTTATTGACTT 58.387 34.615 0.00 0.00 0.00 3.01
123 130 8.746530 ACGGAGAGAGTATTTGTTATTGACTTA 58.253 33.333 0.00 0.00 0.00 2.24
124 131 9.751542 CGGAGAGAGTATTTGTTATTGACTTAT 57.248 33.333 0.00 0.00 0.00 1.73
172 179 9.685828 GTGTGTATAAATTTGGCTAAAGTTTGA 57.314 29.630 13.41 0.00 35.84 2.69
192 199 7.809806 AGTTTGAGAAGTTTGACTTTTGTGAAG 59.190 33.333 0.00 0.00 38.80 3.02
290 299 7.719778 AATCCAAAAGAAAAATCAAGCTCAC 57.280 32.000 0.00 0.00 0.00 3.51
479 490 9.793252 ATATGCTTAGCTAAAGTTTGTGATTTG 57.207 29.630 7.74 0.00 37.53 2.32
491 502 6.686630 AGTTTGTGATTTGTGACTTTTGTGA 58.313 32.000 0.00 0.00 0.00 3.58
598 2029 7.415653 CCCTAAAATCCAGAAGAAAAATCGAGG 60.416 40.741 0.00 0.00 0.00 4.63
606 2037 4.040461 AGAAGAAAAATCGAGGTCACTGGA 59.960 41.667 0.00 0.00 35.85 3.86
611 2042 7.112779 AGAAAAATCGAGGTCACTGGATATTT 58.887 34.615 0.00 0.00 40.71 1.40
624 2055 8.674607 GTCACTGGATATTTCGAAGGTTTAAAT 58.325 33.333 0.00 0.00 0.00 1.40
683 2114 4.477302 TCCGAATTCCGAAAGTTTGAAC 57.523 40.909 0.00 0.00 41.76 3.18
687 2118 5.051973 CCGAATTCCGAAAGTTTGAACAAAC 60.052 40.000 18.82 18.82 44.62 2.93
688 2119 5.051973 CGAATTCCGAAAGTTTGAACAAACC 60.052 40.000 21.58 9.77 44.99 3.27
767 2198 5.953183 TGAATTTGATTTGATTCTGTCCCG 58.047 37.500 0.00 0.00 34.24 5.14
821 2252 3.947834 ACCAAACTTTCAGAGACTTGGTG 59.052 43.478 12.90 0.00 45.20 4.17
843 2275 4.568760 TGAAAATTTCGTTTGAACCTTGGC 59.431 37.500 0.97 0.00 32.71 4.52
1223 5023 9.796120 ATTAGAATATTCGCAGTAGATTCTAGC 57.204 33.333 9.78 0.00 39.21 3.42
1245 5045 6.467677 AGCCATTAGAATATTCGCAGTACAT 58.532 36.000 9.78 0.00 0.00 2.29
1246 5046 7.611770 AGCCATTAGAATATTCGCAGTACATA 58.388 34.615 9.78 0.00 0.00 2.29
1248 5048 8.717821 GCCATTAGAATATTCGCAGTACATAAA 58.282 33.333 9.78 0.00 0.00 1.40
1251 5051 6.764877 AGAATATTCGCAGTACATAAACCG 57.235 37.500 9.78 0.00 0.00 4.44
1252 5052 6.278363 AGAATATTCGCAGTACATAAACCGT 58.722 36.000 9.78 0.00 0.00 4.83
1253 5053 7.428020 AGAATATTCGCAGTACATAAACCGTA 58.572 34.615 9.78 0.00 0.00 4.02
1254 5054 7.922278 AGAATATTCGCAGTACATAAACCGTAA 59.078 33.333 9.78 0.00 0.00 3.18
1255 5055 8.422973 AATATTCGCAGTACATAAACCGTAAA 57.577 30.769 0.00 0.00 0.00 2.01
1256 5056 6.724694 ATTCGCAGTACATAAACCGTAAAA 57.275 33.333 0.00 0.00 0.00 1.52
1258 5058 4.091800 TCGCAGTACATAAACCGTAAAAGC 59.908 41.667 0.00 0.00 0.00 3.51
1259 5059 4.092383 CGCAGTACATAAACCGTAAAAGCT 59.908 41.667 0.00 0.00 0.00 3.74
1260 5060 5.557388 GCAGTACATAAACCGTAAAAGCTC 58.443 41.667 0.00 0.00 0.00 4.09
1261 5061 5.446875 GCAGTACATAAACCGTAAAAGCTCC 60.447 44.000 0.00 0.00 0.00 4.70
1262 5062 5.640357 CAGTACATAAACCGTAAAAGCTCCA 59.360 40.000 0.00 0.00 0.00 3.86
1263 5063 6.315393 CAGTACATAAACCGTAAAAGCTCCAT 59.685 38.462 0.00 0.00 0.00 3.41
1266 5066 1.084289 AACCGTAAAAGCTCCATCGC 58.916 50.000 0.00 0.00 0.00 4.58
1267 5067 0.743345 ACCGTAAAAGCTCCATCGCC 60.743 55.000 0.00 0.00 0.00 5.54
1268 5068 1.636340 CGTAAAAGCTCCATCGCCG 59.364 57.895 0.00 0.00 0.00 6.46
1270 5070 0.373716 GTAAAAGCTCCATCGCCGTG 59.626 55.000 0.00 0.00 0.00 4.94
1271 5071 0.248012 TAAAAGCTCCATCGCCGTGA 59.752 50.000 0.00 0.00 0.00 4.35
1273 5073 1.021390 AAAGCTCCATCGCCGTGAAG 61.021 55.000 0.00 0.00 0.00 3.02
1274 5074 2.859273 AAGCTCCATCGCCGTGAAGG 62.859 60.000 0.00 0.00 44.97 3.46
1417 5217 8.907885 GTGGATTTTCTCTTTTCTGCCTTATAT 58.092 33.333 0.00 0.00 0.00 0.86
1462 5266 9.841295 GGAGGTACAATGTTATCCTAAATACAA 57.159 33.333 0.00 0.00 0.00 2.41
1507 5315 5.119434 GGATCTCGAGTTGTTCAAAGTTCTC 59.881 44.000 13.13 0.00 0.00 2.87
1602 6157 1.952621 CTCCCCAAGTCCCTAGAACA 58.047 55.000 0.00 0.00 0.00 3.18
1604 6159 0.618981 CCCCAAGTCCCTAGAACACC 59.381 60.000 0.00 0.00 0.00 4.16
1696 7755 8.909708 TCTATTTCTGTTTTGTTGTGTTGAAG 57.090 30.769 0.00 0.00 0.00 3.02
1783 8526 4.766375 AGTATACACTGGCATGTTGGTAC 58.234 43.478 5.50 8.67 32.25 3.34
1794 8537 7.131907 TGGCATGTTGGTACTGTAATAGTAT 57.868 36.000 0.00 0.00 43.44 2.12
1800 8543 7.654568 TGTTGGTACTGTAATAGTATGATCCG 58.345 38.462 0.00 0.00 43.44 4.18
1801 8544 6.263516 TGGTACTGTAATAGTATGATCCGC 57.736 41.667 0.00 0.00 43.44 5.54
1842 8585 9.199982 GCCTATTAGTAAATACGAGCAACATAA 57.800 33.333 0.00 0.00 0.00 1.90
1861 8632 3.726291 AATGTTTGCCGGCCATATAAC 57.274 42.857 26.77 19.06 0.00 1.89
1874 8645 4.955811 CCATATAACTGTGGCCTAGACA 57.044 45.455 13.53 4.50 0.00 3.41
1875 8646 4.887748 CCATATAACTGTGGCCTAGACAG 58.112 47.826 17.80 17.80 45.39 3.51
1881 8652 2.171840 CTGTGGCCTAGACAGTGTAGT 58.828 52.381 12.50 0.00 36.79 2.73
1883 8654 2.561419 TGTGGCCTAGACAGTGTAGTTC 59.439 50.000 3.32 0.00 0.00 3.01
1884 8655 1.816835 TGGCCTAGACAGTGTAGTTCG 59.183 52.381 3.32 0.00 0.00 3.95
1885 8656 1.469423 GGCCTAGACAGTGTAGTTCGC 60.469 57.143 0.00 0.78 0.00 4.70
1886 8657 1.469423 GCCTAGACAGTGTAGTTCGCC 60.469 57.143 0.00 0.00 0.00 5.54
1888 8659 1.736126 CTAGACAGTGTAGTTCGCCGA 59.264 52.381 0.00 0.00 0.00 5.54
1889 8660 0.522180 AGACAGTGTAGTTCGCCGAG 59.478 55.000 0.00 0.00 0.00 4.63
1890 8661 0.240411 GACAGTGTAGTTCGCCGAGT 59.760 55.000 0.00 0.00 0.00 4.18
1891 8662 0.672342 ACAGTGTAGTTCGCCGAGTT 59.328 50.000 0.00 0.00 0.00 3.01
1914 8685 6.988622 TTTTTCTAACAGGAACTCGACAAA 57.011 33.333 0.00 0.00 34.60 2.83
1916 8687 8.665643 TTTTTCTAACAGGAACTCGACAAATA 57.334 30.769 0.00 0.00 34.60 1.40
1917 8688 8.665643 TTTTCTAACAGGAACTCGACAAATAA 57.334 30.769 0.00 0.00 34.60 1.40
1919 8690 7.827819 TCTAACAGGAACTCGACAAATAATG 57.172 36.000 0.00 0.00 34.60 1.90
1926 8697 9.840427 CAGGAACTCGACAAATAATGTTTAAAT 57.160 29.630 0.00 0.00 38.96 1.40
1942 8713 9.825972 AATGTTTAAATATTGACTGAGTTCGTG 57.174 29.630 9.15 0.00 0.00 4.35
1943 8714 8.596271 TGTTTAAATATTGACTGAGTTCGTGA 57.404 30.769 0.00 0.00 0.00 4.35
1944 8715 9.214957 TGTTTAAATATTGACTGAGTTCGTGAT 57.785 29.630 0.00 0.00 0.00 3.06
1949 8720 9.653287 AAATATTGACTGAGTTCGTGATAGAAA 57.347 29.630 0.00 0.00 0.00 2.52
1950 8721 8.864069 ATATTGACTGAGTTCGTGATAGAAAG 57.136 34.615 0.00 0.00 0.00 2.62
1951 8722 5.959618 TGACTGAGTTCGTGATAGAAAGA 57.040 39.130 0.00 0.00 0.00 2.52
1952 8723 6.327279 TGACTGAGTTCGTGATAGAAAGAA 57.673 37.500 0.00 0.00 0.00 2.52
1953 8724 6.150318 TGACTGAGTTCGTGATAGAAAGAAC 58.850 40.000 0.00 0.00 42.17 3.01
1959 8730 2.490509 TCGTGATAGAAAGAACTCGGCA 59.509 45.455 0.00 0.00 0.00 5.69
1960 8731 2.854777 CGTGATAGAAAGAACTCGGCAG 59.145 50.000 0.00 0.00 0.00 4.85
1961 8732 3.673594 CGTGATAGAAAGAACTCGGCAGT 60.674 47.826 0.00 0.00 0.00 4.40
1962 8733 4.438336 CGTGATAGAAAGAACTCGGCAGTA 60.438 45.833 0.00 0.00 30.14 2.74
1963 8734 5.593010 GTGATAGAAAGAACTCGGCAGTAT 58.407 41.667 0.00 0.00 30.14 2.12
1964 8735 6.043411 GTGATAGAAAGAACTCGGCAGTATT 58.957 40.000 0.00 0.00 30.14 1.89
1965 8736 7.201145 GTGATAGAAAGAACTCGGCAGTATTA 58.799 38.462 0.00 0.00 30.14 0.98
1966 8737 7.705325 GTGATAGAAAGAACTCGGCAGTATTAA 59.295 37.037 0.00 0.00 30.14 1.40
1967 8738 8.421784 TGATAGAAAGAACTCGGCAGTATTAAT 58.578 33.333 0.00 0.00 30.14 1.40
1968 8739 6.910536 AGAAAGAACTCGGCAGTATTAATG 57.089 37.500 0.00 0.00 30.14 1.90
1969 8740 6.640518 AGAAAGAACTCGGCAGTATTAATGA 58.359 36.000 0.00 0.00 30.14 2.57
1970 8741 7.275920 AGAAAGAACTCGGCAGTATTAATGAT 58.724 34.615 0.00 0.00 30.14 2.45
1971 8742 7.770897 AGAAAGAACTCGGCAGTATTAATGATT 59.229 33.333 0.00 0.00 30.14 2.57
1972 8743 6.851222 AGAACTCGGCAGTATTAATGATTG 57.149 37.500 0.00 0.00 30.14 2.67
1973 8744 5.237344 AGAACTCGGCAGTATTAATGATTGC 59.763 40.000 0.00 5.30 30.14 3.56
1977 8748 2.228822 GGCAGTATTAATGATTGCCGGG 59.771 50.000 18.06 0.00 44.10 5.73
1980 8751 1.544246 GTATTAATGATTGCCGGGCCC 59.456 52.381 17.97 13.57 0.00 5.80
1981 8752 0.831711 ATTAATGATTGCCGGGCCCC 60.832 55.000 18.66 2.97 0.00 5.80
1994 8765 3.857038 GCCCCGTCCAGCCGAATA 61.857 66.667 0.00 0.00 0.00 1.75
1995 8766 2.108362 CCCCGTCCAGCCGAATAC 59.892 66.667 0.00 0.00 0.00 1.89
1996 8767 2.727392 CCCCGTCCAGCCGAATACA 61.727 63.158 0.00 0.00 0.00 2.29
1997 8768 1.227263 CCCGTCCAGCCGAATACAG 60.227 63.158 0.00 0.00 0.00 2.74
1998 8769 1.672854 CCCGTCCAGCCGAATACAGA 61.673 60.000 0.00 0.00 0.00 3.41
1999 8770 0.249073 CCGTCCAGCCGAATACAGAG 60.249 60.000 0.00 0.00 0.00 3.35
2000 8771 0.872021 CGTCCAGCCGAATACAGAGC 60.872 60.000 0.00 0.00 0.00 4.09
2001 8772 0.872021 GTCCAGCCGAATACAGAGCG 60.872 60.000 0.00 0.00 0.00 5.03
2002 8773 2.240500 CCAGCCGAATACAGAGCGC 61.241 63.158 0.00 0.00 0.00 5.92
2004 8775 2.107141 GCCGAATACAGAGCGCCT 59.893 61.111 2.29 0.00 0.00 5.52
2005 8776 1.107538 AGCCGAATACAGAGCGCCTA 61.108 55.000 2.29 0.00 0.00 3.93
2006 8777 0.664767 GCCGAATACAGAGCGCCTAG 60.665 60.000 2.29 0.00 0.00 3.02
2007 8778 0.039074 CCGAATACAGAGCGCCTAGG 60.039 60.000 2.29 3.67 0.00 3.02
2020 8791 2.490217 CTAGGTCGGCACTCGGTG 59.510 66.667 0.00 0.25 39.77 4.94
2021 8792 2.034532 TAGGTCGGCACTCGGTGA 59.965 61.111 8.04 0.00 39.77 4.02
2022 8793 1.592400 CTAGGTCGGCACTCGGTGAA 61.592 60.000 8.04 0.00 39.77 3.18
2024 8795 2.649034 GTCGGCACTCGGTGAAGA 59.351 61.111 8.04 3.79 39.77 2.87
2025 8796 1.215647 GTCGGCACTCGGTGAAGAT 59.784 57.895 8.04 0.00 39.77 2.40
2026 8797 0.389948 GTCGGCACTCGGTGAAGATT 60.390 55.000 8.04 0.00 39.77 2.40
2027 8798 0.320374 TCGGCACTCGGTGAAGATTT 59.680 50.000 8.04 0.00 39.77 2.17
2028 8799 0.721718 CGGCACTCGGTGAAGATTTC 59.278 55.000 8.04 0.00 35.23 2.17
2029 8800 1.808411 GGCACTCGGTGAAGATTTCA 58.192 50.000 8.04 0.00 35.23 2.69
2044 8815 8.208718 TGAAGATTTCACCGAGTTTAATATGG 57.791 34.615 0.00 0.00 34.08 2.74
2045 8816 7.282224 TGAAGATTTCACCGAGTTTAATATGGG 59.718 37.037 0.00 0.00 34.08 4.00
2046 8817 5.531287 AGATTTCACCGAGTTTAATATGGGC 59.469 40.000 0.00 0.00 0.00 5.36
2047 8818 4.497291 TTCACCGAGTTTAATATGGGCT 57.503 40.909 0.00 0.00 0.00 5.19
2048 8819 4.067972 TCACCGAGTTTAATATGGGCTC 57.932 45.455 0.00 0.00 0.00 4.70
2049 8820 3.709653 TCACCGAGTTTAATATGGGCTCT 59.290 43.478 0.00 0.00 0.00 4.09
2050 8821 3.809832 CACCGAGTTTAATATGGGCTCTG 59.190 47.826 0.00 0.00 0.00 3.35
2062 8833 2.934083 GGCTCTGCCGAGTTTCTTT 58.066 52.632 7.01 0.00 39.62 2.52
2064 8835 1.512926 GCTCTGCCGAGTTTCTTTGA 58.487 50.000 7.01 0.00 39.53 2.69
2065 8836 1.873591 GCTCTGCCGAGTTTCTTTGAA 59.126 47.619 7.01 0.00 39.53 2.69
2068 8839 3.541632 TCTGCCGAGTTTCTTTGAAACT 58.458 40.909 21.08 21.08 42.62 2.66
2074 8845 4.287238 GAGTTTCTTTGAAACTCGGCAA 57.713 40.909 26.66 0.00 44.29 4.52
2075 8846 4.668289 GAGTTTCTTTGAAACTCGGCAAA 58.332 39.130 26.66 0.00 44.29 3.68
2077 8848 5.474825 AGTTTCTTTGAAACTCGGCAAAAA 58.525 33.333 16.93 0.00 35.76 1.94
2078 8849 5.576774 AGTTTCTTTGAAACTCGGCAAAAAG 59.423 36.000 16.93 0.00 35.76 2.27
2079 8850 4.040445 TCTTTGAAACTCGGCAAAAAGG 57.960 40.909 0.00 0.00 34.01 3.11
2080 8851 2.880963 TTGAAACTCGGCAAAAAGGG 57.119 45.000 0.00 0.00 0.00 3.95
2081 8852 0.387565 TGAAACTCGGCAAAAAGGGC 59.612 50.000 0.00 0.00 0.00 5.19
2089 8860 2.851805 GGCAAAAAGGGCGATTCTAG 57.148 50.000 0.00 0.00 0.00 2.43
2090 8861 2.092323 GGCAAAAAGGGCGATTCTAGT 58.908 47.619 0.00 0.00 0.00 2.57
2091 8862 3.275999 GGCAAAAAGGGCGATTCTAGTA 58.724 45.455 0.00 0.00 0.00 1.82
2092 8863 3.692593 GGCAAAAAGGGCGATTCTAGTAA 59.307 43.478 0.00 0.00 0.00 2.24
2093 8864 4.338400 GGCAAAAAGGGCGATTCTAGTAAT 59.662 41.667 0.00 0.00 0.00 1.89
2098 8919 4.857509 AGGGCGATTCTAGTAATGTCTC 57.142 45.455 0.00 0.00 0.00 3.36
2131 8952 6.869913 ACCTTTGTTAATTGAGTGCATTCATG 59.130 34.615 13.14 0.00 0.00 3.07
2170 8991 3.117550 TCCTGGGGGTAACATTCATGATG 60.118 47.826 0.00 0.00 41.71 3.07
2251 9090 7.120138 TGTTAAAGTTTTCCCGCCTATCTAAAG 59.880 37.037 0.00 0.00 0.00 1.85
2318 9183 9.868389 CCAGACATTTTTAAAAGCAAAATTCTC 57.132 29.630 0.14 0.00 32.57 2.87
2442 9339 4.209288 CACCAGTTTTACGAGTCAAGACTG 59.791 45.833 7.57 6.82 42.66 3.51
2471 9368 1.014044 GTTCAGTGATTCTCGCCGCA 61.014 55.000 0.00 0.00 0.00 5.69
2561 9461 7.909777 TGACTCGTATTTCTTATAAGCTTCG 57.090 36.000 0.00 7.95 0.00 3.79
2756 9714 7.800092 AGAAATGTGATTATTGTAGAGAGGCT 58.200 34.615 0.00 0.00 0.00 4.58
2902 9886 4.058124 TCAAACTCACTGGACTTTCGATG 58.942 43.478 0.00 0.00 0.00 3.84
2926 9910 5.363101 CAGATAGTGGCTGAGATTAAAGCA 58.637 41.667 0.00 0.00 41.36 3.91
2927 9911 5.236047 CAGATAGTGGCTGAGATTAAAGCAC 59.764 44.000 0.00 0.00 41.36 4.40
2951 9935 3.656559 CCTTCAGTTGCAAAGGGAATTG 58.343 45.455 0.00 0.00 38.72 2.32
3009 10005 2.427232 TTAACGTGTACGAGCTTGCT 57.573 45.000 11.79 0.00 43.02 3.91
3020 10016 1.590238 CGAGCTTGCTAATTCTCACGG 59.410 52.381 0.00 0.00 0.00 4.94
3042 10038 4.778534 CACAACATGCAAGAGGAGAAAT 57.221 40.909 0.00 0.00 0.00 2.17
3047 10043 4.775236 ACATGCAAGAGGAGAAATAGACC 58.225 43.478 0.00 0.00 0.00 3.85
3076 10072 6.883744 AGAAAGCTGTCTCCTCTAATTAAGG 58.116 40.000 0.00 7.15 35.05 2.69
3077 10073 6.442244 AGAAAGCTGTCTCCTCTAATTAAGGT 59.558 38.462 0.00 0.00 35.29 3.50
3078 10074 6.628644 AAGCTGTCTCCTCTAATTAAGGTT 57.371 37.500 11.23 2.35 35.29 3.50
3079 10075 6.628644 AGCTGTCTCCTCTAATTAAGGTTT 57.371 37.500 11.23 0.00 35.29 3.27
3081 10077 6.442244 AGCTGTCTCCTCTAATTAAGGTTTCT 59.558 38.462 11.23 3.14 35.29 2.52
3082 10078 6.759356 GCTGTCTCCTCTAATTAAGGTTTCTC 59.241 42.308 11.23 3.87 35.29 2.87
3083 10079 7.184067 TGTCTCCTCTAATTAAGGTTTCTCC 57.816 40.000 11.23 0.00 35.29 3.71
3100 10096 7.291416 AGGTTTCTCCTCTATTTAGGGAATCTC 59.709 40.741 0.00 0.00 44.42 2.75
3148 10144 8.727910 CATCTGCATGCATTTTACTACATCTAT 58.272 33.333 22.97 0.00 0.00 1.98
3180 10218 9.478768 TGTACAAAGTTGTATAAAATCGTCTCA 57.521 29.630 7.14 0.00 44.59 3.27
3244 10283 4.523083 TGGCCAATAAACATACAGAGGAC 58.477 43.478 0.61 0.00 0.00 3.85
3251 10290 6.814954 ATAAACATACAGAGGACAGACCAT 57.185 37.500 0.00 0.00 42.04 3.55
3254 10293 2.919772 TACAGAGGACAGACCATCCA 57.080 50.000 0.00 0.00 42.04 3.41
3270 10309 3.928375 CCATCCAATTGTGCAAACTAAGC 59.072 43.478 4.43 0.00 0.00 3.09
3301 10340 6.581542 CGGAGTAGCTCACCGTTTATATAAAG 59.418 42.308 8.18 1.03 43.41 1.85
3362 10402 9.771140 GGAGATCCTAACTTCTAGGGATTAATA 57.229 37.037 0.00 0.00 38.52 0.98
3388 10428 4.451891 TCATGCATAAGGGATTTAGCCA 57.548 40.909 0.00 0.00 0.00 4.75
3431 11037 9.803130 GAATTAAACTGTTTACCGAAGTCTAAC 57.197 33.333 12.27 0.00 0.00 2.34
3441 11047 7.515957 TTACCGAAGTCTAACGAATCAAATC 57.484 36.000 0.00 0.00 0.00 2.17
3446 11052 7.863375 CCGAAGTCTAACGAATCAAATCTCTAT 59.137 37.037 0.00 0.00 0.00 1.98
3450 11056 9.239002 AGTCTAACGAATCAAATCTCTATTTCG 57.761 33.333 0.00 0.00 32.87 3.46
3451 11057 7.999322 GTCTAACGAATCAAATCTCTATTTCGC 59.001 37.037 0.00 0.00 32.87 4.70
3452 11058 6.910536 AACGAATCAAATCTCTATTTCGCT 57.089 33.333 0.00 0.00 32.87 4.93
3453 11059 9.181805 CTAACGAATCAAATCTCTATTTCGCTA 57.818 33.333 0.00 0.00 32.87 4.26
3454 11060 7.630470 ACGAATCAAATCTCTATTTCGCTAG 57.370 36.000 0.00 0.00 32.87 3.42
3461 11128 7.918033 TCAAATCTCTATTTCGCTAGACTGAAG 59.082 37.037 0.00 0.00 32.87 3.02
3465 11132 6.486993 TCTCTATTTCGCTAGACTGAAGCATA 59.513 38.462 0.00 0.00 40.08 3.14
3468 11135 2.375146 TCGCTAGACTGAAGCATACCA 58.625 47.619 0.00 0.00 40.08 3.25
3550 11311 9.764363 TGTGATATATTGGACTGTTCTTATGTC 57.236 33.333 0.00 0.00 0.00 3.06
3956 11769 3.808726 GCATGGTTTTGTTGCATTTCAGA 59.191 39.130 0.00 0.00 36.40 3.27
4011 11824 3.140707 TGGGATTGTGGCCATCTTATCAT 59.859 43.478 9.72 0.00 0.00 2.45
4143 11956 2.200373 ACTTCCAATGGTGCCACTAC 57.800 50.000 0.00 0.00 0.00 2.73
4144 11957 1.086696 CTTCCAATGGTGCCACTACG 58.913 55.000 0.00 0.00 0.00 3.51
4385 12201 6.635021 AGTAAGGGGGACAGTAGATTATGAT 58.365 40.000 0.00 0.00 0.00 2.45
4418 12236 1.300697 AACACCGTCGCTGGAGTTC 60.301 57.895 0.00 0.00 38.22 3.01
4456 12274 1.598685 CCACCACCACCGGTTGTAC 60.599 63.158 11.54 0.00 37.07 2.90
4475 12293 0.314935 CGCAAGGTTTTGGATGCAGT 59.685 50.000 0.00 0.00 38.69 4.40
4595 12419 2.750471 ATGCATGCATTAGCCACTAGCA 60.750 45.455 27.46 0.00 37.37 3.49
4742 12603 6.041423 TGAACATCTAGAGTTTGATGCTGA 57.959 37.500 0.00 0.00 42.57 4.26
4763 12624 3.140325 AGGTTTCATTGTGTCACGGAT 57.860 42.857 0.00 0.00 0.00 4.18
4864 12732 3.119029 TGTCGTAAGTTGGCTGGTATACC 60.119 47.826 15.50 15.50 39.48 2.73
4881 12749 1.471119 ACCTTGCTGAATGCTGATGG 58.529 50.000 0.00 0.00 43.37 3.51
4912 12780 1.697432 TCGATGGACTTGTGACCCTTT 59.303 47.619 0.00 0.00 0.00 3.11
4953 12821 5.993055 TCATCTGTTCATGGCTATCTTTCA 58.007 37.500 0.00 0.00 0.00 2.69
4954 12822 5.819379 TCATCTGTTCATGGCTATCTTTCAC 59.181 40.000 0.00 0.00 0.00 3.18
4961 12830 8.677300 TGTTCATGGCTATCTTTCACTATTTTC 58.323 33.333 0.00 0.00 0.00 2.29
5028 12900 4.706476 AGAATGCTGCTGTAAATTGCCTAA 59.294 37.500 0.00 0.00 0.00 2.69
5143 13015 7.134362 TCCGGATCCGATACTATATAGAAGT 57.866 40.000 35.42 0.00 42.83 3.01
5185 13057 3.386768 TGAGGTGTTGAGTAGTTGAGC 57.613 47.619 0.00 0.00 0.00 4.26
5195 13067 4.299155 TGAGTAGTTGAGCTTCTTTGACG 58.701 43.478 0.00 0.00 0.00 4.35
5208 13080 5.685511 GCTTCTTTGACGTAATTTTTGCAGA 59.314 36.000 0.00 0.00 0.00 4.26
5227 13099 5.149977 GCAGAACAACAGTAATCAAAGAGC 58.850 41.667 0.00 0.00 0.00 4.09
5241 13115 9.098355 GTAATCAAAGAGCATATGTTGTCTGTA 57.902 33.333 4.29 0.00 0.00 2.74
5242 13116 8.743085 AATCAAAGAGCATATGTTGTCTGTAT 57.257 30.769 4.29 0.00 0.00 2.29
5246 13120 4.655649 AGAGCATATGTTGTCTGTATCCCA 59.344 41.667 4.29 0.00 0.00 4.37
5257 13131 7.504238 TGTTGTCTGTATCCCAAATTAAAGTGT 59.496 33.333 0.00 0.00 0.00 3.55
5264 13138 9.030452 TGTATCCCAAATTAAAGTGTAGCAAAT 57.970 29.630 0.00 0.00 0.00 2.32
5265 13139 9.516314 GTATCCCAAATTAAAGTGTAGCAAATC 57.484 33.333 0.00 0.00 0.00 2.17
5266 13140 7.775053 TCCCAAATTAAAGTGTAGCAAATCT 57.225 32.000 0.00 0.00 0.00 2.40
5267 13141 7.826690 TCCCAAATTAAAGTGTAGCAAATCTC 58.173 34.615 0.00 0.00 0.00 2.75
5268 13142 7.035612 CCCAAATTAAAGTGTAGCAAATCTCC 58.964 38.462 0.00 0.00 0.00 3.71
5269 13143 7.035612 CCAAATTAAAGTGTAGCAAATCTCCC 58.964 38.462 0.00 0.00 0.00 4.30
5270 13144 7.093771 CCAAATTAAAGTGTAGCAAATCTCCCT 60.094 37.037 0.00 0.00 0.00 4.20
5271 13145 7.396540 AATTAAAGTGTAGCAAATCTCCCTG 57.603 36.000 0.00 0.00 0.00 4.45
5272 13146 2.409948 AGTGTAGCAAATCTCCCTGC 57.590 50.000 0.00 0.00 38.91 4.85
5273 13147 1.630369 AGTGTAGCAAATCTCCCTGCA 59.370 47.619 0.00 0.00 41.17 4.41
5274 13148 2.040278 AGTGTAGCAAATCTCCCTGCAA 59.960 45.455 0.00 0.00 41.17 4.08
5275 13149 2.819608 GTGTAGCAAATCTCCCTGCAAA 59.180 45.455 0.00 0.00 41.17 3.68
5276 13150 3.255642 GTGTAGCAAATCTCCCTGCAAAA 59.744 43.478 0.00 0.00 41.17 2.44
5277 13151 3.894427 TGTAGCAAATCTCCCTGCAAAAA 59.106 39.130 0.00 0.00 41.17 1.94
5323 13197 8.863086 AGTTGCATATTTATTTGGATGTAGCAT 58.137 29.630 0.00 0.00 0.00 3.79
5325 13199 8.406730 TGCATATTTATTTGGATGTAGCATCA 57.593 30.769 10.71 0.00 0.00 3.07
5326 13200 8.298854 TGCATATTTATTTGGATGTAGCATCAC 58.701 33.333 10.71 2.21 0.00 3.06
5328 13202 9.017509 CATATTTATTTGGATGTAGCATCACCT 57.982 33.333 10.71 0.00 0.00 4.00
5329 13203 7.902920 ATTTATTTGGATGTAGCATCACCTT 57.097 32.000 10.71 0.00 0.00 3.50
5330 13204 8.995027 ATTTATTTGGATGTAGCATCACCTTA 57.005 30.769 10.71 0.00 0.00 2.69
5331 13205 8.815565 TTTATTTGGATGTAGCATCACCTTAA 57.184 30.769 10.71 2.18 0.00 1.85
5332 13206 8.815565 TTATTTGGATGTAGCATCACCTTAAA 57.184 30.769 10.71 5.00 0.00 1.52
5333 13207 6.757897 TTTGGATGTAGCATCACCTTAAAG 57.242 37.500 10.71 0.00 0.00 1.85
5334 13208 5.692115 TGGATGTAGCATCACCTTAAAGA 57.308 39.130 10.71 0.00 0.00 2.52
5335 13209 6.252599 TGGATGTAGCATCACCTTAAAGAT 57.747 37.500 10.71 0.00 0.00 2.40
5336 13210 6.662755 TGGATGTAGCATCACCTTAAAGATT 58.337 36.000 10.71 0.00 0.00 2.40
5337 13211 7.801104 TGGATGTAGCATCACCTTAAAGATTA 58.199 34.615 10.71 0.00 0.00 1.75
5338 13212 7.933577 TGGATGTAGCATCACCTTAAAGATTAG 59.066 37.037 10.71 0.00 0.00 1.73
5339 13213 7.389053 GGATGTAGCATCACCTTAAAGATTAGG 59.611 40.741 10.71 0.00 37.56 2.69
5340 13214 7.432148 TGTAGCATCACCTTAAAGATTAGGA 57.568 36.000 0.00 0.00 35.45 2.94
5341 13215 8.034313 TGTAGCATCACCTTAAAGATTAGGAT 57.966 34.615 0.00 0.00 35.45 3.24
5342 13216 7.933577 TGTAGCATCACCTTAAAGATTAGGATG 59.066 37.037 0.00 0.00 35.45 3.51
5343 13217 6.904626 AGCATCACCTTAAAGATTAGGATGT 58.095 36.000 0.00 0.00 35.45 3.06
5344 13218 8.034313 AGCATCACCTTAAAGATTAGGATGTA 57.966 34.615 0.00 0.00 35.45 2.29
5345 13219 8.153550 AGCATCACCTTAAAGATTAGGATGTAG 58.846 37.037 0.00 0.00 35.45 2.74
5346 13220 7.095017 GCATCACCTTAAAGATTAGGATGTAGC 60.095 40.741 0.00 0.00 35.45 3.58
5347 13221 7.432148 TCACCTTAAAGATTAGGATGTAGCA 57.568 36.000 0.00 0.00 35.45 3.49
5348 13222 7.857456 TCACCTTAAAGATTAGGATGTAGCAA 58.143 34.615 0.00 0.00 35.45 3.91
5349 13223 8.325787 TCACCTTAAAGATTAGGATGTAGCAAA 58.674 33.333 0.00 0.00 35.45 3.68
5350 13224 8.398665 CACCTTAAAGATTAGGATGTAGCAAAC 58.601 37.037 0.00 0.00 35.45 2.93
5351 13225 7.556635 ACCTTAAAGATTAGGATGTAGCAAACC 59.443 37.037 0.00 0.00 35.45 3.27
5352 13226 7.013369 CCTTAAAGATTAGGATGTAGCAAACCC 59.987 40.741 0.00 0.00 33.13 4.11
5353 13227 5.450818 AAGATTAGGATGTAGCAAACCCA 57.549 39.130 0.00 0.00 0.00 4.51
5371 13245 3.589735 ACCCACCCAAACTACATCATACA 59.410 43.478 0.00 0.00 0.00 2.29
5405 13280 7.450014 TGAGCCATTGGACAACTTAAAGATTAA 59.550 33.333 6.95 0.00 0.00 1.40
5518 13395 6.996282 TCAGCCTTAGTTTAAAGTAACAAGCT 59.004 34.615 16.97 16.97 0.00 3.74
5519 13396 7.501225 TCAGCCTTAGTTTAAAGTAACAAGCTT 59.499 33.333 18.70 0.00 0.00 3.74
5520 13397 8.135529 CAGCCTTAGTTTAAAGTAACAAGCTTT 58.864 33.333 18.70 0.00 39.26 3.51
5521 13398 8.692710 AGCCTTAGTTTAAAGTAACAAGCTTTT 58.307 29.630 16.97 0.00 37.37 2.27
5522 13399 9.309516 GCCTTAGTTTAAAGTAACAAGCTTTTT 57.690 29.630 10.79 0.00 37.37 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
80 87 5.716094 TCTCCGTCTGAAAATAATTGTCGA 58.284 37.500 0.00 0.00 0.00 4.20
82 89 6.814146 ACTCTCTCCGTCTGAAAATAATTGTC 59.186 38.462 0.00 0.00 0.00 3.18
87 94 8.311836 ACAAATACTCTCTCCGTCTGAAAATAA 58.688 33.333 0.00 0.00 0.00 1.40
172 179 5.710099 TGGTCTTCACAAAAGTCAAACTTCT 59.290 36.000 0.00 0.00 37.47 2.85
192 199 7.013464 CCTCCCGTCTCATAGTATATATTGGTC 59.987 44.444 0.00 0.00 0.00 4.02
290 299 5.684550 ACTAAAGTTTAAACCTTCGCCAG 57.315 39.130 14.72 5.38 0.00 4.85
395 404 6.805271 GTGACGATCAGCTACAACTAAGTAAA 59.195 38.462 0.00 0.00 0.00 2.01
457 467 7.113544 GTCACAAATCACAAACTTTAGCTAAGC 59.886 37.037 6.24 0.00 37.37 3.09
463 473 9.139174 ACAAAAGTCACAAATCACAAACTTTAG 57.861 29.630 0.00 0.00 36.29 1.85
477 488 6.146837 CACATTGGTTTTCACAAAAGTCACAA 59.853 34.615 0.00 0.00 0.00 3.33
479 490 5.445806 GCACATTGGTTTTCACAAAAGTCAC 60.446 40.000 0.00 0.00 0.00 3.67
566 577 7.754851 TTTCTTCTGGATTTTAGGGTAACAC 57.245 36.000 0.00 0.00 39.74 3.32
567 578 8.770010 TTTTTCTTCTGGATTTTAGGGTAACA 57.230 30.769 0.00 0.00 39.74 2.41
598 2029 7.605410 TTAAACCTTCGAAATATCCAGTGAC 57.395 36.000 0.00 0.00 0.00 3.67
611 2042 8.553696 GTCTGTCACTAAAATTTAAACCTTCGA 58.446 33.333 0.00 0.00 0.00 3.71
624 2055 8.617809 GGTCTACATTTTTGTCTGTCACTAAAA 58.382 33.333 0.00 0.00 41.81 1.52
683 2114 5.438761 AGATCGACTTTCAAAAGGGTTTG 57.561 39.130 7.37 0.00 44.71 2.93
767 2198 8.003784 CCAAAATGTTTGTAAGCTCGAAATTTC 58.996 33.333 8.20 8.20 0.00 2.17
821 2252 4.025229 GGCCAAGGTTCAAACGAAATTTTC 60.025 41.667 0.00 0.00 0.00 2.29
843 2275 2.033194 GGTCTTTCGCACGAAGGGG 61.033 63.158 13.86 5.81 35.38 4.79
899 2331 1.219393 GAAGAAGGGACAGGCGAGG 59.781 63.158 0.00 0.00 0.00 4.63
900 2332 1.219393 GGAAGAAGGGACAGGCGAG 59.781 63.158 0.00 0.00 0.00 5.03
1231 5031 8.422973 TTTTACGGTTTATGTACTGCGAATAT 57.577 30.769 0.00 0.00 0.00 1.28
1234 5034 5.389725 GCTTTTACGGTTTATGTACTGCGAA 60.390 40.000 0.00 0.00 0.00 4.70
1237 5037 5.446875 GGAGCTTTTACGGTTTATGTACTGC 60.447 44.000 0.00 0.00 0.00 4.40
1238 5038 5.640357 TGGAGCTTTTACGGTTTATGTACTG 59.360 40.000 0.00 0.00 0.00 2.74
1245 5045 2.674357 GCGATGGAGCTTTTACGGTTTA 59.326 45.455 0.00 0.00 0.00 2.01
1246 5046 1.467342 GCGATGGAGCTTTTACGGTTT 59.533 47.619 0.00 0.00 0.00 3.27
1248 5048 0.743345 GGCGATGGAGCTTTTACGGT 60.743 55.000 0.00 0.00 37.29 4.83
1250 5050 1.082117 ACGGCGATGGAGCTTTTACG 61.082 55.000 16.62 0.00 37.29 3.18
1251 5051 0.373716 CACGGCGATGGAGCTTTTAC 59.626 55.000 16.62 0.00 37.29 2.01
1252 5052 0.248012 TCACGGCGATGGAGCTTTTA 59.752 50.000 16.62 0.00 37.29 1.52
1253 5053 0.605319 TTCACGGCGATGGAGCTTTT 60.605 50.000 16.62 0.00 37.29 2.27
1254 5054 1.003839 TTCACGGCGATGGAGCTTT 60.004 52.632 16.62 0.00 37.29 3.51
1255 5055 1.448540 CTTCACGGCGATGGAGCTT 60.449 57.895 16.62 0.00 37.29 3.74
1256 5056 2.185350 CTTCACGGCGATGGAGCT 59.815 61.111 16.62 0.00 37.29 4.09
1258 5058 1.811266 CACCTTCACGGCGATGGAG 60.811 63.158 16.62 12.25 40.66 3.86
1259 5059 2.264480 CACCTTCACGGCGATGGA 59.736 61.111 16.62 5.09 40.66 3.41
1260 5060 3.499737 GCACCTTCACGGCGATGG 61.500 66.667 16.62 12.09 43.23 3.51
1261 5061 3.499737 GGCACCTTCACGGCGATG 61.500 66.667 16.62 8.65 35.61 3.84
1262 5062 3.706373 AGGCACCTTCACGGCGAT 61.706 61.111 16.62 0.00 35.61 4.58
1263 5063 4.680237 CAGGCACCTTCACGGCGA 62.680 66.667 16.62 0.00 35.61 5.54
1266 5066 2.360350 ATGCAGGCACCTTCACGG 60.360 61.111 0.00 0.00 39.35 4.94
1267 5067 1.236616 TTGATGCAGGCACCTTCACG 61.237 55.000 0.00 0.00 0.00 4.35
1268 5068 0.961019 TTTGATGCAGGCACCTTCAC 59.039 50.000 0.00 0.00 0.00 3.18
1270 5070 1.068055 CACTTTGATGCAGGCACCTTC 60.068 52.381 0.00 0.00 0.00 3.46
1271 5071 0.963962 CACTTTGATGCAGGCACCTT 59.036 50.000 0.00 0.00 0.00 3.50
1273 5073 0.242017 GACACTTTGATGCAGGCACC 59.758 55.000 0.00 0.00 0.00 5.01
1274 5074 0.110056 CGACACTTTGATGCAGGCAC 60.110 55.000 0.00 0.00 0.00 5.01
1420 5220 4.126520 ACCTCCTTGCCCATTTCTAAAA 57.873 40.909 0.00 0.00 0.00 1.52
1421 5221 3.825908 ACCTCCTTGCCCATTTCTAAA 57.174 42.857 0.00 0.00 0.00 1.85
1422 5222 3.589735 TGTACCTCCTTGCCCATTTCTAA 59.410 43.478 0.00 0.00 0.00 2.10
1423 5223 3.186283 TGTACCTCCTTGCCCATTTCTA 58.814 45.455 0.00 0.00 0.00 2.10
1424 5224 1.992557 TGTACCTCCTTGCCCATTTCT 59.007 47.619 0.00 0.00 0.00 2.52
1425 5225 2.507407 TGTACCTCCTTGCCCATTTC 57.493 50.000 0.00 0.00 0.00 2.17
1426 5226 2.990740 TTGTACCTCCTTGCCCATTT 57.009 45.000 0.00 0.00 0.00 2.32
1427 5227 2.042979 ACATTGTACCTCCTTGCCCATT 59.957 45.455 0.00 0.00 0.00 3.16
1588 6143 1.358152 TGGGGTGTTCTAGGGACTTG 58.642 55.000 0.00 0.00 41.75 3.16
1602 6157 4.862641 ACAGTAAGCAGAATTATGGGGT 57.137 40.909 1.67 0.00 0.00 4.95
1604 6159 5.192927 TGGAACAGTAAGCAGAATTATGGG 58.807 41.667 1.67 0.00 0.00 4.00
1696 7755 9.390795 CAGTATGCTAATTTTGACATTAGATGC 57.609 33.333 4.90 0.00 38.54 3.91
1727 8446 9.048446 ACATGTGTTCGTACTAATTAAAAGTGT 57.952 29.630 0.00 0.00 0.00 3.55
1783 8526 6.856895 TCATCAGCGGATCATACTATTACAG 58.143 40.000 0.00 0.00 0.00 2.74
1794 8537 2.013563 GCCAAGTTCATCAGCGGATCA 61.014 52.381 0.00 0.00 0.00 2.92
1800 8543 0.964358 AGGCAGCCAAGTTCATCAGC 60.964 55.000 15.80 0.00 0.00 4.26
1801 8544 2.408271 TAGGCAGCCAAGTTCATCAG 57.592 50.000 15.80 0.00 0.00 2.90
1842 8585 2.622942 CAGTTATATGGCCGGCAAACAT 59.377 45.455 30.85 23.84 0.00 2.71
1861 8632 2.171840 ACTACACTGTCTAGGCCACAG 58.828 52.381 17.80 17.80 45.86 3.66
1871 8642 0.240411 ACTCGGCGAACTACACTGTC 59.760 55.000 12.13 0.00 0.00 3.51
1873 8644 1.779569 AAACTCGGCGAACTACACTG 58.220 50.000 12.13 0.00 0.00 3.66
1874 8645 2.521105 AAAACTCGGCGAACTACACT 57.479 45.000 12.13 0.00 0.00 3.55
1891 8662 6.988622 TTTGTCGAGTTCCTGTTAGAAAAA 57.011 33.333 0.00 0.00 0.00 1.94
1896 8667 7.596749 ACATTATTTGTCGAGTTCCTGTTAG 57.403 36.000 0.00 0.00 30.89 2.34
1897 8668 7.972832 AACATTATTTGTCGAGTTCCTGTTA 57.027 32.000 0.00 0.00 37.68 2.41
1899 8670 6.877611 AAACATTATTTGTCGAGTTCCTGT 57.122 33.333 0.00 0.00 37.68 4.00
1900 8671 9.840427 ATTTAAACATTATTTGTCGAGTTCCTG 57.160 29.630 0.00 0.00 37.68 3.86
1916 8687 9.825972 CACGAACTCAGTCAATATTTAAACATT 57.174 29.630 0.00 0.00 0.00 2.71
1917 8688 9.214957 TCACGAACTCAGTCAATATTTAAACAT 57.785 29.630 0.00 0.00 0.00 2.71
1926 8697 8.051901 TCTTTCTATCACGAACTCAGTCAATA 57.948 34.615 0.00 0.00 0.00 1.90
1928 8699 6.327279 TCTTTCTATCACGAACTCAGTCAA 57.673 37.500 0.00 0.00 0.00 3.18
1929 8700 5.959618 TCTTTCTATCACGAACTCAGTCA 57.040 39.130 0.00 0.00 0.00 3.41
1931 8702 6.334102 AGTTCTTTCTATCACGAACTCAGT 57.666 37.500 0.00 0.00 41.43 3.41
1935 8706 4.734917 CCGAGTTCTTTCTATCACGAACT 58.265 43.478 3.45 3.45 46.15 3.01
1936 8707 3.303760 GCCGAGTTCTTTCTATCACGAAC 59.696 47.826 0.00 0.00 36.81 3.95
1937 8708 3.057104 TGCCGAGTTCTTTCTATCACGAA 60.057 43.478 0.00 0.00 0.00 3.85
1938 8709 2.490509 TGCCGAGTTCTTTCTATCACGA 59.509 45.455 0.00 0.00 0.00 4.35
1939 8710 2.854777 CTGCCGAGTTCTTTCTATCACG 59.145 50.000 0.00 0.00 0.00 4.35
1941 8712 5.854010 ATACTGCCGAGTTCTTTCTATCA 57.146 39.130 0.00 0.00 33.21 2.15
1942 8713 8.704234 CATTAATACTGCCGAGTTCTTTCTATC 58.296 37.037 0.00 0.00 33.21 2.08
1943 8714 8.421784 TCATTAATACTGCCGAGTTCTTTCTAT 58.578 33.333 0.00 0.00 33.21 1.98
1944 8715 7.778083 TCATTAATACTGCCGAGTTCTTTCTA 58.222 34.615 0.00 0.00 33.21 2.10
1945 8716 6.640518 TCATTAATACTGCCGAGTTCTTTCT 58.359 36.000 0.00 0.00 33.21 2.52
1946 8717 6.903883 TCATTAATACTGCCGAGTTCTTTC 57.096 37.500 0.00 0.00 33.21 2.62
1947 8718 7.679638 GCAATCATTAATACTGCCGAGTTCTTT 60.680 37.037 4.88 0.00 33.21 2.52
1948 8719 6.238484 GCAATCATTAATACTGCCGAGTTCTT 60.238 38.462 4.88 0.00 33.21 2.52
1949 8720 5.237344 GCAATCATTAATACTGCCGAGTTCT 59.763 40.000 4.88 0.00 33.21 3.01
1950 8721 5.444122 GCAATCATTAATACTGCCGAGTTC 58.556 41.667 4.88 0.00 33.21 3.01
1951 8722 4.275936 GGCAATCATTAATACTGCCGAGTT 59.724 41.667 15.16 0.00 42.86 3.01
1952 8723 3.815401 GGCAATCATTAATACTGCCGAGT 59.185 43.478 15.16 0.00 42.86 4.18
1953 8724 4.410492 GGCAATCATTAATACTGCCGAG 57.590 45.455 15.16 0.00 42.86 4.63
1959 8730 2.514803 GGCCCGGCAATCATTAATACT 58.485 47.619 12.58 0.00 0.00 2.12
1960 8731 1.544246 GGGCCCGGCAATCATTAATAC 59.456 52.381 5.69 0.00 0.00 1.89
1961 8732 1.549037 GGGGCCCGGCAATCATTAATA 60.549 52.381 17.79 0.00 0.00 0.98
1962 8733 0.831711 GGGGCCCGGCAATCATTAAT 60.832 55.000 17.79 0.00 0.00 1.40
1963 8734 1.456705 GGGGCCCGGCAATCATTAA 60.457 57.895 17.79 0.00 0.00 1.40
1964 8735 2.197324 GGGGCCCGGCAATCATTA 59.803 61.111 17.79 0.00 0.00 1.90
1977 8748 3.857038 TATTCGGCTGGACGGGGC 61.857 66.667 0.00 0.00 0.00 5.80
1980 8751 0.249073 CTCTGTATTCGGCTGGACGG 60.249 60.000 0.00 0.00 0.00 4.79
1981 8752 0.872021 GCTCTGTATTCGGCTGGACG 60.872 60.000 0.00 0.00 0.00 4.79
1982 8753 0.872021 CGCTCTGTATTCGGCTGGAC 60.872 60.000 0.00 0.00 0.00 4.02
1983 8754 1.437573 CGCTCTGTATTCGGCTGGA 59.562 57.895 0.00 0.00 0.00 3.86
1984 8755 2.240500 GCGCTCTGTATTCGGCTGG 61.241 63.158 0.00 0.00 0.00 4.85
1986 8757 2.107141 GGCGCTCTGTATTCGGCT 59.893 61.111 7.64 0.00 43.92 5.52
1987 8758 0.664767 CTAGGCGCTCTGTATTCGGC 60.665 60.000 7.64 0.00 46.96 5.54
1988 8759 0.039074 CCTAGGCGCTCTGTATTCGG 60.039 60.000 7.64 0.00 0.00 4.30
1989 8760 0.669077 ACCTAGGCGCTCTGTATTCG 59.331 55.000 9.30 0.00 0.00 3.34
1991 8762 0.669077 CGACCTAGGCGCTCTGTATT 59.331 55.000 9.30 0.00 0.00 1.89
1992 8763 1.173444 CCGACCTAGGCGCTCTGTAT 61.173 60.000 9.30 0.00 0.00 2.29
1993 8764 1.822613 CCGACCTAGGCGCTCTGTA 60.823 63.158 9.30 0.00 0.00 2.74
1994 8765 3.141488 CCGACCTAGGCGCTCTGT 61.141 66.667 9.30 0.00 0.00 3.41
2002 8773 2.754658 ACCGAGTGCCGACCTAGG 60.755 66.667 7.41 7.41 41.76 3.02
2004 8775 1.592400 CTTCACCGAGTGCCGACCTA 61.592 60.000 0.00 0.00 41.76 3.08
2005 8776 2.915659 TTCACCGAGTGCCGACCT 60.916 61.111 0.00 0.00 41.76 3.85
2006 8777 2.227089 ATCTTCACCGAGTGCCGACC 62.227 60.000 0.00 0.00 41.76 4.79
2007 8778 0.389948 AATCTTCACCGAGTGCCGAC 60.390 55.000 0.00 0.00 41.76 4.79
2009 8780 0.721718 GAAATCTTCACCGAGTGCCG 59.278 55.000 0.00 0.00 32.98 5.69
2010 8781 1.808411 TGAAATCTTCACCGAGTGCC 58.192 50.000 0.00 0.00 34.08 5.01
2020 8791 7.639945 CCCATATTAAACTCGGTGAAATCTTC 58.360 38.462 0.00 0.00 0.00 2.87
2021 8792 6.039382 GCCCATATTAAACTCGGTGAAATCTT 59.961 38.462 0.00 0.00 0.00 2.40
2022 8793 5.531287 GCCCATATTAAACTCGGTGAAATCT 59.469 40.000 0.00 0.00 0.00 2.40
2024 8795 5.445964 AGCCCATATTAAACTCGGTGAAAT 58.554 37.500 0.00 0.00 0.00 2.17
2025 8796 4.850680 AGCCCATATTAAACTCGGTGAAA 58.149 39.130 0.00 0.00 0.00 2.69
2026 8797 4.163458 AGAGCCCATATTAAACTCGGTGAA 59.837 41.667 0.00 0.00 32.60 3.18
2027 8798 3.709653 AGAGCCCATATTAAACTCGGTGA 59.290 43.478 0.00 0.00 32.60 4.02
2028 8799 3.809832 CAGAGCCCATATTAAACTCGGTG 59.190 47.826 0.00 0.00 32.60 4.94
2029 8800 3.744530 GCAGAGCCCATATTAAACTCGGT 60.745 47.826 0.00 0.00 32.60 4.69
2030 8801 2.808543 GCAGAGCCCATATTAAACTCGG 59.191 50.000 0.00 0.00 32.60 4.63
2047 8818 3.541632 AGTTTCAAAGAAACTCGGCAGA 58.458 40.909 16.92 0.00 35.76 4.26
2048 8819 3.878245 GAGTTTCAAAGAAACTCGGCAG 58.122 45.455 27.00 0.00 44.29 4.85
2049 8820 3.963383 GAGTTTCAAAGAAACTCGGCA 57.037 42.857 27.00 0.00 44.29 5.69
2054 8825 4.712122 TTTGCCGAGTTTCAAAGAAACT 57.288 36.364 21.24 21.24 42.62 2.66
2055 8826 5.220397 CCTTTTTGCCGAGTTTCAAAGAAAC 60.220 40.000 13.24 13.24 34.21 2.78
2056 8827 4.867608 CCTTTTTGCCGAGTTTCAAAGAAA 59.132 37.500 0.00 0.00 34.21 2.52
2057 8828 4.429108 CCTTTTTGCCGAGTTTCAAAGAA 58.571 39.130 0.00 0.00 34.21 2.52
2060 8831 2.740256 GCCCTTTTTGCCGAGTTTCAAA 60.740 45.455 0.00 0.00 0.00 2.69
2062 8833 0.387565 GCCCTTTTTGCCGAGTTTCA 59.612 50.000 0.00 0.00 0.00 2.69
2064 8835 1.104577 TCGCCCTTTTTGCCGAGTTT 61.105 50.000 0.00 0.00 0.00 2.66
2065 8836 0.893727 ATCGCCCTTTTTGCCGAGTT 60.894 50.000 0.00 0.00 32.86 3.01
2068 8839 0.608035 AGAATCGCCCTTTTTGCCGA 60.608 50.000 0.00 0.00 0.00 5.54
2069 8840 1.064060 CTAGAATCGCCCTTTTTGCCG 59.936 52.381 0.00 0.00 0.00 5.69
2074 8845 5.990668 AGACATTACTAGAATCGCCCTTTT 58.009 37.500 0.00 0.00 0.00 2.27
2075 8846 5.602628 GAGACATTACTAGAATCGCCCTTT 58.397 41.667 0.00 0.00 0.00 3.11
2077 8848 3.253677 CGAGACATTACTAGAATCGCCCT 59.746 47.826 0.00 0.00 0.00 5.19
2078 8849 3.004524 ACGAGACATTACTAGAATCGCCC 59.995 47.826 0.00 0.00 32.22 6.13
2079 8850 4.023878 AGACGAGACATTACTAGAATCGCC 60.024 45.833 0.00 0.00 32.22 5.54
2080 8851 5.098218 AGACGAGACATTACTAGAATCGC 57.902 43.478 0.00 0.00 32.22 4.58
2081 8852 7.972623 AAAAGACGAGACATTACTAGAATCG 57.027 36.000 0.00 0.00 35.00 3.34
2082 8853 9.235537 GGTAAAAGACGAGACATTACTAGAATC 57.764 37.037 0.00 0.00 0.00 2.52
2083 8854 8.968969 AGGTAAAAGACGAGACATTACTAGAAT 58.031 33.333 0.00 0.00 0.00 2.40
2084 8855 8.345724 AGGTAAAAGACGAGACATTACTAGAA 57.654 34.615 0.00 0.00 0.00 2.10
2085 8856 7.934855 AGGTAAAAGACGAGACATTACTAGA 57.065 36.000 0.00 0.00 0.00 2.43
2088 8859 7.215085 ACAAAGGTAAAAGACGAGACATTACT 58.785 34.615 0.00 0.00 0.00 2.24
2089 8860 7.417496 ACAAAGGTAAAAGACGAGACATTAC 57.583 36.000 0.00 0.00 0.00 1.89
2090 8861 9.545105 TTAACAAAGGTAAAAGACGAGACATTA 57.455 29.630 0.00 0.00 0.00 1.90
2091 8862 6.937436 AACAAAGGTAAAAGACGAGACATT 57.063 33.333 0.00 0.00 0.00 2.71
2092 8863 8.617290 ATTAACAAAGGTAAAAGACGAGACAT 57.383 30.769 0.00 0.00 0.00 3.06
2093 8864 8.339714 CAATTAACAAAGGTAAAAGACGAGACA 58.660 33.333 0.00 0.00 0.00 3.41
2098 8919 7.112984 GCACTCAATTAACAAAGGTAAAAGACG 59.887 37.037 0.00 0.00 0.00 4.18
2131 8952 6.721668 CCCCCAGGATTCTATTAGAATTTTCC 59.278 42.308 17.79 15.40 44.41 3.13
2152 8973 2.887152 GAGCATCATGAATGTTACCCCC 59.113 50.000 0.00 0.00 37.71 5.40
2170 8991 3.936564 AGCCTAATAAGCATGCTAGAGC 58.063 45.455 23.00 18.00 42.50 4.09
2232 9071 3.211865 CCCTTTAGATAGGCGGGAAAAC 58.788 50.000 0.00 0.00 37.05 2.43
2314 9179 9.894783 GCACATAAGATAATTACTAGACGAGAA 57.105 33.333 0.00 0.00 0.00 2.87
2318 9183 9.130312 GAAGGCACATAAGATAATTACTAGACG 57.870 37.037 0.00 0.00 0.00 4.18
2442 9339 6.143118 GCGAGAATCACTGAACTGATATGTAC 59.857 42.308 0.00 0.00 30.27 2.90
2495 9393 7.260558 TGCATTTCAGAAGATCATCAGAATC 57.739 36.000 6.61 1.77 0.00 2.52
2756 9714 1.819288 TGGCACGAAACTCCAAAACAA 59.181 42.857 0.00 0.00 0.00 2.83
2881 9865 3.364366 GCATCGAAAGTCCAGTGAGTTTG 60.364 47.826 0.00 0.00 42.77 2.93
2902 9886 4.213059 GCTTTAATCTCAGCCACTATCTGC 59.787 45.833 0.00 0.00 0.00 4.26
2926 9910 1.402787 CCTTTGCAACTGAAGGGTGT 58.597 50.000 0.00 0.00 38.98 4.16
2982 9978 7.449827 CAAGCTCGTACACGTTAAAATTATCA 58.550 34.615 1.19 0.00 40.80 2.15
2983 9979 6.407181 GCAAGCTCGTACACGTTAAAATTATC 59.593 38.462 1.19 0.00 40.80 1.75
2984 9980 6.091713 AGCAAGCTCGTACACGTTAAAATTAT 59.908 34.615 1.19 0.00 40.80 1.28
3042 10038 4.338682 GGAGACAGCTTTCTATTCGGTCTA 59.661 45.833 1.47 0.00 35.88 2.59
3047 10043 4.647424 AGAGGAGACAGCTTTCTATTCG 57.353 45.455 1.47 0.00 0.00 3.34
3075 10071 7.381789 AGATTCCCTAAATAGAGGAGAAACC 57.618 40.000 0.00 0.00 39.15 3.27
3076 10072 7.291416 AGGAGATTCCCTAAATAGAGGAGAAAC 59.709 40.741 0.00 0.00 39.15 2.78
3077 10073 7.374271 AGGAGATTCCCTAAATAGAGGAGAAA 58.626 38.462 0.00 0.00 39.15 2.52
3078 10074 6.939617 AGGAGATTCCCTAAATAGAGGAGAA 58.060 40.000 0.00 0.00 39.15 2.87
3079 10075 6.336930 AGAGGAGATTCCCTAAATAGAGGAGA 59.663 42.308 0.00 0.00 39.15 3.71
3081 10077 6.553554 AGAGGAGATTCCCTAAATAGAGGA 57.446 41.667 0.00 0.00 39.15 3.71
3082 10078 8.909423 AATAGAGGAGATTCCCTAAATAGAGG 57.091 38.462 0.00 0.00 37.19 3.69
3087 10083 9.690446 TCCTTAAATAGAGGAGATTCCCTAAAT 57.310 33.333 0.00 0.00 38.37 1.40
3088 10084 9.690446 ATCCTTAAATAGAGGAGATTCCCTAAA 57.310 33.333 0.00 0.00 45.94 1.85
3089 10085 9.690446 AATCCTTAAATAGAGGAGATTCCCTAA 57.310 33.333 0.00 0.00 45.94 2.69
3090 10086 9.327731 GAATCCTTAAATAGAGGAGATTCCCTA 57.672 37.037 0.00 0.00 45.94 3.53
3091 10087 8.022062 AGAATCCTTAAATAGAGGAGATTCCCT 58.978 37.037 0.00 0.00 45.94 4.20
3092 10088 8.213489 AGAATCCTTAAATAGAGGAGATTCCC 57.787 38.462 0.00 0.00 45.94 3.97
3244 10283 3.006110 AGTTTGCACAATTGGATGGTCTG 59.994 43.478 10.83 0.00 0.00 3.51
3251 10290 4.870123 ATGCTTAGTTTGCACAATTGGA 57.130 36.364 10.83 0.00 43.59 3.53
3254 10293 6.317642 TCCGTATATGCTTAGTTTGCACAATT 59.682 34.615 0.00 0.00 43.59 2.32
3270 10309 3.473093 CGGTGAGCTACTCCGTATATG 57.527 52.381 13.32 0.00 46.42 1.78
3362 10402 6.183360 GGCTAAATCCCTTATGCATGAAAAGT 60.183 38.462 10.16 0.00 0.00 2.66
3364 10404 5.660417 TGGCTAAATCCCTTATGCATGAAAA 59.340 36.000 10.16 0.00 0.00 2.29
3375 10415 2.530460 TGTGCATGGCTAAATCCCTT 57.470 45.000 0.00 0.00 0.00 3.95
3413 10462 5.860182 TGATTCGTTAGACTTCGGTAAACAG 59.140 40.000 0.00 0.00 0.00 3.16
3431 11037 7.593273 AGTCTAGCGAAATAGAGATTTGATTCG 59.407 37.037 0.00 0.00 41.69 3.34
3441 11047 4.926244 TGCTTCAGTCTAGCGAAATAGAG 58.074 43.478 0.00 0.00 41.54 2.43
3446 11052 3.194755 TGGTATGCTTCAGTCTAGCGAAA 59.805 43.478 0.00 0.00 41.54 3.46
3448 11054 2.099263 GTGGTATGCTTCAGTCTAGCGA 59.901 50.000 0.00 0.00 41.54 4.93
3449 11055 2.099921 AGTGGTATGCTTCAGTCTAGCG 59.900 50.000 0.00 0.00 41.54 4.26
3450 11056 3.810310 AGTGGTATGCTTCAGTCTAGC 57.190 47.619 0.00 0.00 39.10 3.42
3451 11057 7.097192 TGTTTTAGTGGTATGCTTCAGTCTAG 58.903 38.462 0.00 0.00 0.00 2.43
3452 11058 6.999950 TGTTTTAGTGGTATGCTTCAGTCTA 58.000 36.000 0.00 0.00 0.00 2.59
3453 11059 5.865085 TGTTTTAGTGGTATGCTTCAGTCT 58.135 37.500 0.00 0.00 0.00 3.24
3454 11060 6.554334 TTGTTTTAGTGGTATGCTTCAGTC 57.446 37.500 0.00 0.00 0.00 3.51
3461 11128 7.094762 GGGATAGCTATTGTTTTAGTGGTATGC 60.095 40.741 7.87 0.00 0.00 3.14
3465 11132 6.576778 AGGGATAGCTATTGTTTTAGTGGT 57.423 37.500 7.87 0.00 0.00 4.16
3468 11135 7.873195 AGGAAAGGGATAGCTATTGTTTTAGT 58.127 34.615 7.87 0.00 0.00 2.24
3550 11311 5.105997 CCAAGTAAGGAATGAAAGCAAGGAG 60.106 44.000 0.00 0.00 0.00 3.69
3956 11769 5.705397 TCCTCATCAGTTCATCTTGGAAT 57.295 39.130 0.00 0.00 0.00 3.01
4011 11824 1.863155 GCAACCCCAGGGAGATTCCA 61.863 60.000 7.25 0.00 38.64 3.53
4143 11956 1.089481 ACATTGGTCATGCTACGCCG 61.089 55.000 0.00 0.00 36.14 6.46
4144 11957 0.378257 CACATTGGTCATGCTACGCC 59.622 55.000 0.00 0.00 36.14 5.68
4385 12201 5.050227 CGACGGTGTTGTTTTTACCTCAATA 60.050 40.000 0.00 0.00 32.28 1.90
4435 12253 3.413300 AACCGGTGGTGGTGGTGT 61.413 61.111 8.52 0.00 42.89 4.16
4456 12274 0.314935 ACTGCATCCAAAACCTTGCG 59.685 50.000 0.00 0.00 37.92 4.85
4475 12293 1.801242 TGACCTCTGACCAAGGAACA 58.199 50.000 0.00 0.00 37.35 3.18
4595 12419 5.278512 GCTCATCATGAATGAAGCACATCAT 60.279 40.000 0.00 0.00 43.78 2.45
4742 12603 2.925724 TCCGTGACACAATGAAACCTT 58.074 42.857 6.37 0.00 0.00 3.50
4763 12624 3.128349 GACAGTTTGCGTCTGGTAAGAA 58.872 45.455 7.34 0.00 37.25 2.52
4881 12749 1.205893 AGTCCATCGAGTCAAAGAGGC 59.794 52.381 0.00 0.00 0.00 4.70
4912 12780 8.857694 ACAGATGATCACATAATATGCATTCA 57.142 30.769 3.54 0.00 36.82 2.57
4961 12830 7.043961 TCAACTGCCATAGAGTATGAACTAG 57.956 40.000 0.00 0.00 38.45 2.57
5053 12925 1.405105 GCAAGCAACAGACCTGACAAA 59.595 47.619 3.76 0.00 0.00 2.83
5165 13037 2.965831 AGCTCAACTACTCAACACCTCA 59.034 45.455 0.00 0.00 0.00 3.86
5174 13046 4.299978 ACGTCAAAGAAGCTCAACTACTC 58.700 43.478 0.00 0.00 0.00 2.59
5185 13057 7.219917 TGTTCTGCAAAAATTACGTCAAAGAAG 59.780 33.333 0.00 0.00 0.00 2.85
5195 13067 9.243637 TGATTACTGTTGTTCTGCAAAAATTAC 57.756 29.630 0.00 0.00 39.03 1.89
5208 13080 8.340618 ACATATGCTCTTTGATTACTGTTGTT 57.659 30.769 1.58 0.00 0.00 2.83
5241 13115 8.366359 AGATTTGCTACACTTTAATTTGGGAT 57.634 30.769 0.00 0.00 0.00 3.85
5242 13116 7.093945 GGAGATTTGCTACACTTTAATTTGGGA 60.094 37.037 0.00 0.00 0.00 4.37
5246 13120 7.577616 GCAGGGAGATTTGCTACACTTTAATTT 60.578 37.037 0.00 0.00 37.35 1.82
5277 13151 6.918022 GCAACTACAGATTTGCTACACTTTTT 59.082 34.615 0.00 0.00 43.96 1.94
5278 13152 6.039270 TGCAACTACAGATTTGCTACACTTTT 59.961 34.615 7.73 0.00 46.83 2.27
5279 13153 5.530915 TGCAACTACAGATTTGCTACACTTT 59.469 36.000 7.73 0.00 46.83 2.66
5280 13154 5.063204 TGCAACTACAGATTTGCTACACTT 58.937 37.500 7.73 0.00 46.83 3.16
5281 13155 4.641396 TGCAACTACAGATTTGCTACACT 58.359 39.130 7.73 0.00 46.83 3.55
5282 13156 5.551760 ATGCAACTACAGATTTGCTACAC 57.448 39.130 7.73 0.00 46.83 2.90
5283 13157 7.864108 AATATGCAACTACAGATTTGCTACA 57.136 32.000 7.73 0.00 46.83 2.74
5300 13174 8.298854 GTGATGCTACATCCAAATAAATATGCA 58.701 33.333 5.19 0.00 0.00 3.96
5301 13175 7.756722 GGTGATGCTACATCCAAATAAATATGC 59.243 37.037 5.19 0.00 0.00 3.14
5323 13197 7.432148 TGCTACATCCTAATCTTTAAGGTGA 57.568 36.000 0.00 0.00 34.30 4.02
5325 13199 7.556635 GGTTTGCTACATCCTAATCTTTAAGGT 59.443 37.037 0.00 0.00 34.30 3.50
5326 13200 7.013369 GGGTTTGCTACATCCTAATCTTTAAGG 59.987 40.741 0.00 0.00 0.00 2.69
5328 13202 7.338449 GTGGGTTTGCTACATCCTAATCTTTAA 59.662 37.037 0.00 0.00 0.00 1.52
5329 13203 6.826741 GTGGGTTTGCTACATCCTAATCTTTA 59.173 38.462 0.00 0.00 0.00 1.85
5330 13204 5.652452 GTGGGTTTGCTACATCCTAATCTTT 59.348 40.000 0.00 0.00 0.00 2.52
5331 13205 5.193679 GTGGGTTTGCTACATCCTAATCTT 58.806 41.667 0.00 0.00 0.00 2.40
5332 13206 4.385310 GGTGGGTTTGCTACATCCTAATCT 60.385 45.833 0.00 0.00 0.00 2.40
5333 13207 3.883489 GGTGGGTTTGCTACATCCTAATC 59.117 47.826 0.00 0.00 0.00 1.75
5334 13208 3.372675 GGGTGGGTTTGCTACATCCTAAT 60.373 47.826 0.00 0.00 32.62 1.73
5335 13209 2.025699 GGGTGGGTTTGCTACATCCTAA 60.026 50.000 0.00 0.00 32.62 2.69
5336 13210 1.562475 GGGTGGGTTTGCTACATCCTA 59.438 52.381 0.00 0.00 32.62 2.94
5337 13211 0.331616 GGGTGGGTTTGCTACATCCT 59.668 55.000 0.00 0.00 32.62 3.24
5338 13212 0.039035 TGGGTGGGTTTGCTACATCC 59.961 55.000 0.00 0.00 35.93 3.51
5339 13213 1.917872 TTGGGTGGGTTTGCTACATC 58.082 50.000 0.00 0.00 0.00 3.06
5340 13214 1.967779 GTTTGGGTGGGTTTGCTACAT 59.032 47.619 0.00 0.00 0.00 2.29
5341 13215 1.063567 AGTTTGGGTGGGTTTGCTACA 60.064 47.619 0.00 0.00 0.00 2.74
5342 13216 1.699730 AGTTTGGGTGGGTTTGCTAC 58.300 50.000 0.00 0.00 0.00 3.58
5343 13217 2.175069 TGTAGTTTGGGTGGGTTTGCTA 59.825 45.455 0.00 0.00 0.00 3.49
5344 13218 1.063567 TGTAGTTTGGGTGGGTTTGCT 60.064 47.619 0.00 0.00 0.00 3.91
5345 13219 1.404843 TGTAGTTTGGGTGGGTTTGC 58.595 50.000 0.00 0.00 0.00 3.68
5346 13220 3.226777 TGATGTAGTTTGGGTGGGTTTG 58.773 45.455 0.00 0.00 0.00 2.93
5347 13221 3.603965 TGATGTAGTTTGGGTGGGTTT 57.396 42.857 0.00 0.00 0.00 3.27
5348 13222 3.825908 ATGATGTAGTTTGGGTGGGTT 57.174 42.857 0.00 0.00 0.00 4.11
5349 13223 3.589735 TGTATGATGTAGTTTGGGTGGGT 59.410 43.478 0.00 0.00 0.00 4.51
5350 13224 4.229304 TGTATGATGTAGTTTGGGTGGG 57.771 45.455 0.00 0.00 0.00 4.61
5351 13225 5.885352 TGAATGTATGATGTAGTTTGGGTGG 59.115 40.000 0.00 0.00 0.00 4.61
5352 13226 7.121168 ACTTGAATGTATGATGTAGTTTGGGTG 59.879 37.037 0.00 0.00 0.00 4.61
5353 13227 7.175104 ACTTGAATGTATGATGTAGTTTGGGT 58.825 34.615 0.00 0.00 0.00 4.51
5371 13245 3.499338 TGTCCAATGGCTCAACTTGAAT 58.501 40.909 0.00 0.00 0.00 2.57
5409 13284 7.985752 GCCTACAGACCTATAACATACAAACTT 59.014 37.037 0.00 0.00 0.00 2.66
5411 13286 7.438459 CAGCCTACAGACCTATAACATACAAAC 59.562 40.741 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.