Multiple sequence alignment - TraesCS5A01G359300

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G359300 chr5A 100.000 5953 0 0 1 5953 561263834 561269786 0.000000e+00 10994.0
1 TraesCS5A01G359300 chr5A 91.881 1207 70 4 1570 2751 585087900 585086697 0.000000e+00 1661.0
2 TraesCS5A01G359300 chr5A 93.962 1060 59 2 1698 2753 559458964 559460022 0.000000e+00 1598.0
3 TraesCS5A01G359300 chr5A 92.990 970 47 5 1570 2518 680706682 680707651 0.000000e+00 1395.0
4 TraesCS5A01G359300 chr5A 87.739 522 54 10 6 521 591792635 591792118 8.540000e-168 601.0
5 TraesCS5A01G359300 chr5A 97.306 297 8 0 268 564 561258927 561259223 6.890000e-139 505.0
6 TraesCS5A01G359300 chr5A 79.295 681 108 16 4077 4733 561978731 561978060 4.230000e-121 446.0
7 TraesCS5A01G359300 chr5A 91.919 99 8 0 3991 4089 709722571 709722473 8.040000e-29 139.0
8 TraesCS5A01G359300 chr5A 90.385 104 5 4 4431 4534 64808810 64808908 1.350000e-26 132.0
9 TraesCS5A01G359300 chr5A 81.203 133 22 2 1046 1178 561980423 561980294 2.930000e-18 104.0
10 TraesCS5A01G359300 chr5A 79.137 139 22 5 5552 5687 531079109 531078975 8.220000e-14 89.8
11 TraesCS5A01G359300 chr5A 94.444 54 3 0 784 837 561264575 561264628 3.820000e-12 84.2
12 TraesCS5A01G359300 chr5A 94.444 54 3 0 742 795 561264617 561264670 3.820000e-12 84.2
13 TraesCS5A01G359300 chr5B 95.106 1410 60 5 4078 5482 541285812 541287217 0.000000e+00 2213.0
14 TraesCS5A01G359300 chr5B 94.147 598 34 1 3401 3998 541285219 541285815 0.000000e+00 909.0
15 TraesCS5A01G359300 chr5B 85.314 606 56 6 3321 3924 642745262 642745836 3.970000e-166 595.0
16 TraesCS5A01G359300 chr5B 89.978 449 43 2 3321 3769 642574044 642574490 4.000000e-161 579.0
17 TraesCS5A01G359300 chr5B 84.653 606 60 6 3321 3924 642720969 642721543 1.860000e-159 573.0
18 TraesCS5A01G359300 chr5B 89.333 450 45 3 3321 3769 642489090 642489537 4.030000e-156 562.0
19 TraesCS5A01G359300 chr5B 88.840 457 32 11 784 1235 541284040 541284482 1.460000e-150 544.0
20 TraesCS5A01G359300 chr5B 87.025 447 39 10 5516 5952 541287224 541287661 2.490000e-133 486.0
21 TraesCS5A01G359300 chr5B 83.148 540 74 15 1 532 141569420 141569950 1.500000e-130 477.0
22 TraesCS5A01G359300 chr5B 84.855 449 42 12 3321 3769 642479937 642480359 4.260000e-116 429.0
23 TraesCS5A01G359300 chr5B 79.284 531 94 11 3354 3872 541099570 541100096 2.040000e-94 357.0
24 TraesCS5A01G359300 chr5B 82.160 426 61 11 3454 3872 541157617 541158034 9.490000e-93 351.0
25 TraesCS5A01G359300 chr5B 90.476 231 17 3 4078 4304 642574618 642574847 3.490000e-77 300.0
26 TraesCS5A01G359300 chr5B 89.177 231 20 3 4078 4304 642721639 642721868 3.510000e-72 283.0
27 TraesCS5A01G359300 chr5B 88.511 235 22 3 4078 4308 642745932 642746165 4.540000e-71 279.0
28 TraesCS5A01G359300 chr5B 81.387 274 35 8 911 1181 541156321 541156581 6.050000e-50 209.0
29 TraesCS5A01G359300 chr5B 95.455 88 4 0 3995 4082 187861756 187861669 2.240000e-29 141.0
30 TraesCS5A01G359300 chr5B 77.523 218 31 11 5739 5948 620128 619921 1.360000e-21 115.0
31 TraesCS5A01G359300 chr5B 79.861 144 23 5 1046 1184 541956034 541955892 3.800000e-17 100.0
32 TraesCS5A01G359300 chr5B 78.472 144 20 8 5549 5687 504811586 504811449 3.820000e-12 84.2
33 TraesCS5A01G359300 chr5D 91.140 1377 95 14 4115 5482 444476067 444477425 0.000000e+00 1842.0
34 TraesCS5A01G359300 chr5D 90.636 865 73 6 4078 4938 511590580 511591440 0.000000e+00 1142.0
35 TraesCS5A01G359300 chr5D 89.552 871 83 5 4078 4944 511525759 511526625 0.000000e+00 1098.0
36 TraesCS5A01G359300 chr5D 95.481 509 23 0 3408 3916 444475532 444476040 0.000000e+00 813.0
37 TraesCS5A01G359300 chr5D 90.368 571 35 9 4079 4636 511626962 511627525 0.000000e+00 732.0
38 TraesCS5A01G359300 chr5D 87.813 599 47 4 3321 3919 511525086 511525658 0.000000e+00 678.0
39 TraesCS5A01G359300 chr5D 88.276 580 46 11 814 1383 444474443 444475010 0.000000e+00 675.0
40 TraesCS5A01G359300 chr5D 84.547 563 75 9 1 556 191122887 191122330 1.130000e-151 547.0
41 TraesCS5A01G359300 chr5D 88.114 387 26 3 3321 3703 511589940 511590310 5.480000e-120 442.0
42 TraesCS5A01G359300 chr5D 79.340 576 97 12 4100 4666 444545314 444545876 9.360000e-103 385.0
43 TraesCS5A01G359300 chr5D 80.594 505 56 21 892 1383 511588636 511589111 9.490000e-93 351.0
44 TraesCS5A01G359300 chr5D 76.496 702 113 34 4077 4752 444355386 444356061 9.560000e-88 335.0
45 TraesCS5A01G359300 chr5D 77.674 533 93 20 3354 3872 444348627 444349147 9.700000e-78 302.0
46 TraesCS5A01G359300 chr5D 78.780 377 72 6 3439 3812 444301487 444301858 4.610000e-61 246.0
47 TraesCS5A01G359300 chr5D 90.374 187 13 4 5537 5718 444477446 444477632 2.140000e-59 241.0
48 TraesCS5A01G359300 chr5D 77.500 440 72 17 3403 3833 444354756 444355177 7.710000e-59 239.0
49 TraesCS5A01G359300 chr5D 78.554 401 52 7 3348 3745 444530973 444531342 3.590000e-57 233.0
50 TraesCS5A01G359300 chr5D 80.339 295 44 12 270 556 191127802 191127514 1.680000e-50 211.0
51 TraesCS5A01G359300 chr5D 78.467 274 43 12 4961 5223 444351369 444351637 1.330000e-36 165.0
52 TraesCS5A01G359300 chr5D 82.081 173 31 0 4164 4336 535862713 535862885 1.340000e-31 148.0
53 TraesCS5A01G359300 chr5D 77.922 231 44 5 3523 3750 535630743 535630969 2.890000e-28 137.0
54 TraesCS5A01G359300 chr5D 87.826 115 9 5 3980 4089 277238916 277239030 4.840000e-26 130.0
55 TraesCS5A01G359300 chr5D 77.376 221 47 3 4156 4374 535723894 535724113 1.740000e-25 128.0
56 TraesCS5A01G359300 chr5D 76.735 245 44 7 4178 4411 535728412 535728654 2.250000e-24 124.0
57 TraesCS5A01G359300 chr5D 85.593 118 14 3 3974 4091 52603993 52603879 2.910000e-23 121.0
58 TraesCS5A01G359300 chr5D 79.235 183 29 6 3568 3747 535816100 535816276 1.050000e-22 119.0
59 TraesCS5A01G359300 chr5D 91.667 84 7 0 5870 5953 396812477 396812560 3.770000e-22 117.0
60 TraesCS5A01G359300 chr5D 79.739 153 20 8 5540 5687 417623075 417622929 3.800000e-17 100.0
61 TraesCS5A01G359300 chr5D 80.000 125 19 3 1070 1188 444353253 444353377 2.960000e-13 87.9
62 TraesCS5A01G359300 chr5D 74.222 225 49 5 3525 3747 535547613 535547830 1.060000e-12 86.1
63 TraesCS5A01G359300 chr5D 81.034 116 11 5 2751 2855 511524251 511524366 1.380000e-11 82.4
64 TraesCS5A01G359300 chr7A 93.384 1194 67 5 1570 2757 648738970 648737783 0.000000e+00 1757.0
65 TraesCS5A01G359300 chr7A 91.294 1206 77 7 1568 2753 87162941 87164138 0.000000e+00 1620.0
66 TraesCS5A01G359300 chr7A 90.347 1212 88 10 1570 2757 79634191 79632985 0.000000e+00 1563.0
67 TraesCS5A01G359300 chr7A 89.633 762 41 6 1570 2310 603932774 603933518 0.000000e+00 935.0
68 TraesCS5A01G359300 chr7A 80.065 1224 163 35 1568 2752 533047738 533048919 0.000000e+00 833.0
69 TraesCS5A01G359300 chr7A 88.909 559 52 9 1 553 719970129 719969575 0.000000e+00 680.0
70 TraesCS5A01G359300 chr7A 85.121 289 30 9 271 553 719975038 719974757 3.510000e-72 283.0
71 TraesCS5A01G359300 chr1A 92.773 1190 71 7 1570 2757 495321586 495322762 0.000000e+00 1707.0
72 TraesCS5A01G359300 chr1A 90.099 1212 94 8 1562 2751 545760650 545761857 0.000000e+00 1550.0
73 TraesCS5A01G359300 chr1A 92.553 94 7 0 3994 4087 418057806 418057713 1.040000e-27 135.0
74 TraesCS5A01G359300 chr1A 82.759 116 13 6 5569 5681 9244616 9244505 4.910000e-16 97.1
75 TraesCS5A01G359300 chr3A 92.199 1205 65 6 1570 2751 81653608 81654806 0.000000e+00 1677.0
76 TraesCS5A01G359300 chr3A 92.418 1187 73 1 1568 2754 696703922 696705091 0.000000e+00 1677.0
77 TraesCS5A01G359300 chr3A 91.611 1204 78 4 1567 2751 160508822 160510021 0.000000e+00 1642.0
78 TraesCS5A01G359300 chr3A 91.221 1196 72 11 1570 2757 730658532 730657362 0.000000e+00 1596.0
79 TraesCS5A01G359300 chr3A 96.454 564 17 1 1 564 175626920 175626360 0.000000e+00 928.0
80 TraesCS5A01G359300 chr3A 96.939 294 9 0 271 564 175631802 175631509 1.490000e-135 494.0
81 TraesCS5A01G359300 chr3A 84.153 183 23 4 1373 1553 600921026 600920848 7.930000e-39 172.0
82 TraesCS5A01G359300 chr3A 85.366 123 16 2 5537 5658 9342796 9342917 6.260000e-25 126.0
83 TraesCS5A01G359300 chr3A 78.307 189 22 12 5739 5918 742043947 742043769 2.930000e-18 104.0
84 TraesCS5A01G359300 chr2A 98.050 564 11 0 1 564 195776998 195776435 0.000000e+00 981.0
85 TraesCS5A01G359300 chr2A 88.194 576 52 12 1 564 676178686 676178115 0.000000e+00 673.0
86 TraesCS5A01G359300 chr2A 87.652 575 57 10 1 564 568317768 568317197 0.000000e+00 656.0
87 TraesCS5A01G359300 chr2A 96.959 296 9 0 269 564 195781903 195781608 1.150000e-136 497.0
88 TraesCS5A01G359300 chr2A 97.391 115 3 0 1570 1684 240481599 240481485 4.710000e-46 196.0
89 TraesCS5A01G359300 chr4A 84.922 577 70 14 1 565 738403436 738402865 8.660000e-158 568.0
90 TraesCS5A01G359300 chr4A 79.739 306 45 14 271 564 738416904 738416604 7.820000e-49 206.0
91 TraesCS5A01G359300 chr4A 91.176 102 8 1 3986 4087 578562722 578562622 2.890000e-28 137.0
92 TraesCS5A01G359300 chr4D 86.782 174 17 5 1382 1553 465125471 465125302 7.880000e-44 189.0
93 TraesCS5A01G359300 chr4D 94.186 86 5 0 3995 4080 436376801 436376716 1.350000e-26 132.0
94 TraesCS5A01G359300 chr4D 93.182 88 6 0 3995 4082 1334024 1334111 4.840000e-26 130.0
95 TraesCS5A01G359300 chr4D 93.103 87 6 0 3995 4081 68726244 68726330 1.740000e-25 128.0
96 TraesCS5A01G359300 chr4D 91.304 92 8 0 3995 4086 446912537 446912628 6.260000e-25 126.0
97 TraesCS5A01G359300 chr4D 88.235 102 12 0 3990 4091 81986607 81986506 8.100000e-24 122.0
98 TraesCS5A01G359300 chr3D 86.705 173 18 4 1382 1553 87926000 87926168 2.830000e-43 187.0
99 TraesCS5A01G359300 chr3D 92.784 97 7 0 3984 4080 37525661 37525565 2.240000e-29 141.0
100 TraesCS5A01G359300 chr3D 91.346 104 4 4 4431 4534 263329984 263329886 2.890000e-28 137.0
101 TraesCS5A01G359300 chr3D 91.837 98 8 0 3985 4082 263991630 263991727 2.890000e-28 137.0
102 TraesCS5A01G359300 chr3D 91.753 97 8 0 3984 4080 37539530 37539434 1.040000e-27 135.0
103 TraesCS5A01G359300 chr3D 89.899 99 9 1 3991 4088 482205881 482205979 6.260000e-25 126.0
104 TraesCS5A01G359300 chr3D 74.479 192 32 12 5738 5921 23630684 23630502 3.850000e-07 67.6
105 TraesCS5A01G359300 chr4B 87.349 166 16 4 1381 1545 650273217 650273378 1.020000e-42 185.0
106 TraesCS5A01G359300 chr4B 97.872 47 1 0 4431 4477 508513692 508513738 1.380000e-11 82.4
107 TraesCS5A01G359300 chr2B 86.228 167 19 4 1381 1546 597711472 597711635 1.700000e-40 178.0
108 TraesCS5A01G359300 chr2B 85.465 172 21 4 1382 1550 39208092 39208262 6.130000e-40 176.0
109 TraesCS5A01G359300 chr2B 77.578 223 32 12 5739 5953 616456721 616456933 1.050000e-22 119.0
110 TraesCS5A01G359300 chr2B 85.333 75 8 2 5875 5948 753995843 753995915 2.300000e-09 75.0
111 TraesCS5A01G359300 chr7B 85.311 177 19 6 1372 1546 176002821 176002992 6.130000e-40 176.0
112 TraesCS5A01G359300 chr3B 85.311 177 19 5 1370 1546 604820156 604819987 6.130000e-40 176.0
113 TraesCS5A01G359300 chr3B 79.821 223 28 10 5739 5953 578619319 578619106 4.810000e-31 147.0
114 TraesCS5A01G359300 chr3B 91.262 103 8 1 3986 4088 44750950 44751051 8.040000e-29 139.0
115 TraesCS5A01G359300 chr3B 92.708 96 6 1 3995 4090 752216473 752216567 2.890000e-28 137.0
116 TraesCS5A01G359300 chr3B 81.579 76 13 1 5552 5627 9913662 9913588 1.790000e-05 62.1
117 TraesCS5A01G359300 chr6D 84.746 177 21 5 1375 1550 256724154 256724325 7.930000e-39 172.0
118 TraesCS5A01G359300 chr6D 89.565 115 8 3 4420 4534 4694713 4694823 6.220000e-30 143.0
119 TraesCS5A01G359300 chr6D 92.473 93 7 0 3995 4087 417354786 417354694 3.740000e-27 134.0
120 TraesCS5A01G359300 chr6D 93.103 87 6 0 3995 4081 85925739 85925825 1.740000e-25 128.0
121 TraesCS5A01G359300 chr6D 93.103 87 6 0 3995 4081 448291807 448291721 1.740000e-25 128.0
122 TraesCS5A01G359300 chr6D 92.135 89 7 0 3995 4083 226771637 226771549 6.260000e-25 126.0
123 TraesCS5A01G359300 chr6D 91.489 94 3 4 4431 4523 269966093 269966182 2.250000e-24 124.0
124 TraesCS5A01G359300 chr6D 91.209 91 8 0 3992 4082 380781871 380781781 2.250000e-24 124.0
125 TraesCS5A01G359300 chr6D 91.111 90 8 0 3995 4084 235208726 235208637 8.100000e-24 122.0
126 TraesCS5A01G359300 chr6D 90.426 94 4 4 4431 4523 269965945 269965856 1.050000e-22 119.0
127 TraesCS5A01G359300 chr1B 92.308 104 3 4 4431 4534 167565320 167565418 6.220000e-30 143.0
128 TraesCS5A01G359300 chr1B 91.250 80 4 2 5875 5953 17618503 17618426 8.160000e-19 106.0
129 TraesCS5A01G359300 chr7D 93.548 93 6 0 3991 4083 204732459 204732367 8.040000e-29 139.0
130 TraesCS5A01G359300 chr6B 93.548 93 6 0 3991 4083 476176021 476176113 8.040000e-29 139.0
131 TraesCS5A01G359300 chr6B 93.548 93 5 1 3991 4083 471127635 471127544 2.890000e-28 137.0
132 TraesCS5A01G359300 chr6B 88.462 104 8 4 4431 4534 255100091 255099992 8.100000e-24 122.0
133 TraesCS5A01G359300 chrUn 92.708 96 6 1 3995 4090 335557649 335557743 2.890000e-28 137.0
134 TraesCS5A01G359300 chrUn 96.203 79 3 0 3995 4073 332204518 332204440 4.840000e-26 130.0
135 TraesCS5A01G359300 chrUn 95.122 82 4 0 3992 4073 332213721 332213802 4.840000e-26 130.0
136 TraesCS5A01G359300 chrUn 96.203 79 3 0 3995 4073 373754971 373754893 4.840000e-26 130.0
137 TraesCS5A01G359300 chrUn 93.103 87 6 0 3995 4081 29391782 29391868 1.740000e-25 128.0
138 TraesCS5A01G359300 chrUn 93.103 87 6 0 3995 4081 110732051 110731965 1.740000e-25 128.0
139 TraesCS5A01G359300 chrUn 92.941 85 6 0 3995 4079 13209427 13209343 2.250000e-24 124.0
140 TraesCS5A01G359300 chrUn 96.053 76 3 0 3993 4068 41929546 41929471 2.250000e-24 124.0
141 TraesCS5A01G359300 chrUn 91.954 87 7 0 3995 4081 232649907 232649821 8.100000e-24 122.0
142 TraesCS5A01G359300 chrUn 90.909 88 8 0 3994 4081 60935247 60935160 1.050000e-22 119.0
143 TraesCS5A01G359300 chrUn 88.776 98 9 2 3994 4090 126734426 126734330 1.050000e-22 119.0
144 TraesCS5A01G359300 chr1D 92.632 95 6 1 3988 4082 41575214 41575121 1.040000e-27 135.0
145 TraesCS5A01G359300 chr1D 91.667 96 8 0 3992 4087 439024784 439024879 3.740000e-27 134.0
146 TraesCS5A01G359300 chr1D 94.253 87 5 0 3994 4080 462461531 462461617 3.740000e-27 134.0
147 TraesCS5A01G359300 chr1D 93.333 90 5 1 3984 4073 452282866 452282778 1.350000e-26 132.0
148 TraesCS5A01G359300 chr1D 93.182 88 6 0 3986 4073 124331897 124331984 4.840000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G359300 chr5A 561263834 561269786 5952 False 10994.000000 10994 100.00000 1 5953 1 chr5A.!!$F4 5952
1 TraesCS5A01G359300 chr5A 585086697 585087900 1203 True 1661.000000 1661 91.88100 1570 2751 1 chr5A.!!$R2 1181
2 TraesCS5A01G359300 chr5A 559458964 559460022 1058 False 1598.000000 1598 93.96200 1698 2753 1 chr5A.!!$F2 1055
3 TraesCS5A01G359300 chr5A 680706682 680707651 969 False 1395.000000 1395 92.99000 1570 2518 1 chr5A.!!$F5 948
4 TraesCS5A01G359300 chr5A 591792118 591792635 517 True 601.000000 601 87.73900 6 521 1 chr5A.!!$R3 515
5 TraesCS5A01G359300 chr5A 561978060 561980423 2363 True 275.000000 446 80.24900 1046 4733 2 chr5A.!!$R5 3687
6 TraesCS5A01G359300 chr5B 541284040 541287661 3621 False 1038.000000 2213 91.27950 784 5952 4 chr5B.!!$F6 5168
7 TraesCS5A01G359300 chr5B 141569420 141569950 530 False 477.000000 477 83.14800 1 532 1 chr5B.!!$F1 531
8 TraesCS5A01G359300 chr5B 642574044 642574847 803 False 439.500000 579 90.22700 3321 4304 2 chr5B.!!$F7 983
9 TraesCS5A01G359300 chr5B 642745262 642746165 903 False 437.000000 595 86.91250 3321 4308 2 chr5B.!!$F9 987
10 TraesCS5A01G359300 chr5B 642720969 642721868 899 False 428.000000 573 86.91500 3321 4304 2 chr5B.!!$F8 983
11 TraesCS5A01G359300 chr5B 541099570 541100096 526 False 357.000000 357 79.28400 3354 3872 1 chr5B.!!$F2 518
12 TraesCS5A01G359300 chr5B 541156321 541158034 1713 False 280.000000 351 81.77350 911 3872 2 chr5B.!!$F5 2961
13 TraesCS5A01G359300 chr5D 444474443 444477632 3189 False 892.750000 1842 91.31775 814 5718 4 chr5D.!!$F14 4904
14 TraesCS5A01G359300 chr5D 511626962 511627525 563 False 732.000000 732 90.36800 4079 4636 1 chr5D.!!$F6 557
15 TraesCS5A01G359300 chr5D 511588636 511591440 2804 False 645.000000 1142 86.44800 892 4938 3 chr5D.!!$F16 4046
16 TraesCS5A01G359300 chr5D 511524251 511526625 2374 False 619.466667 1098 86.13300 2751 4944 3 chr5D.!!$F15 2193
17 TraesCS5A01G359300 chr5D 191122330 191122887 557 True 547.000000 547 84.54700 1 556 1 chr5D.!!$R2 555
18 TraesCS5A01G359300 chr5D 444545314 444545876 562 False 385.000000 385 79.34000 4100 4666 1 chr5D.!!$F5 566
19 TraesCS5A01G359300 chr5D 444348627 444356061 7434 False 225.780000 335 78.02740 1070 5223 5 chr5D.!!$F13 4153
20 TraesCS5A01G359300 chr7A 648737783 648738970 1187 True 1757.000000 1757 93.38400 1570 2757 1 chr7A.!!$R2 1187
21 TraesCS5A01G359300 chr7A 87162941 87164138 1197 False 1620.000000 1620 91.29400 1568 2753 1 chr7A.!!$F1 1185
22 TraesCS5A01G359300 chr7A 79632985 79634191 1206 True 1563.000000 1563 90.34700 1570 2757 1 chr7A.!!$R1 1187
23 TraesCS5A01G359300 chr7A 603932774 603933518 744 False 935.000000 935 89.63300 1570 2310 1 chr7A.!!$F3 740
24 TraesCS5A01G359300 chr7A 533047738 533048919 1181 False 833.000000 833 80.06500 1568 2752 1 chr7A.!!$F2 1184
25 TraesCS5A01G359300 chr7A 719969575 719970129 554 True 680.000000 680 88.90900 1 553 1 chr7A.!!$R3 552
26 TraesCS5A01G359300 chr1A 495321586 495322762 1176 False 1707.000000 1707 92.77300 1570 2757 1 chr1A.!!$F1 1187
27 TraesCS5A01G359300 chr1A 545760650 545761857 1207 False 1550.000000 1550 90.09900 1562 2751 1 chr1A.!!$F2 1189
28 TraesCS5A01G359300 chr3A 81653608 81654806 1198 False 1677.000000 1677 92.19900 1570 2751 1 chr3A.!!$F2 1181
29 TraesCS5A01G359300 chr3A 696703922 696705091 1169 False 1677.000000 1677 92.41800 1568 2754 1 chr3A.!!$F4 1186
30 TraesCS5A01G359300 chr3A 160508822 160510021 1199 False 1642.000000 1642 91.61100 1567 2751 1 chr3A.!!$F3 1184
31 TraesCS5A01G359300 chr3A 730657362 730658532 1170 True 1596.000000 1596 91.22100 1570 2757 1 chr3A.!!$R4 1187
32 TraesCS5A01G359300 chr3A 175626360 175626920 560 True 928.000000 928 96.45400 1 564 1 chr3A.!!$R1 563
33 TraesCS5A01G359300 chr2A 195776435 195776998 563 True 981.000000 981 98.05000 1 564 1 chr2A.!!$R1 563
34 TraesCS5A01G359300 chr2A 676178115 676178686 571 True 673.000000 673 88.19400 1 564 1 chr2A.!!$R5 563
35 TraesCS5A01G359300 chr2A 568317197 568317768 571 True 656.000000 656 87.65200 1 564 1 chr2A.!!$R4 563
36 TraesCS5A01G359300 chr4A 738402865 738403436 571 True 568.000000 568 84.92200 1 565 1 chr4A.!!$R2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 576 0.032416 AGTAGGGGCCGTGACAGTAT 60.032 55.000 9.43 0.0 0.00 2.12 F
695 704 0.034896 GCGTCCATATAGGTGGGTGG 59.965 60.000 0.00 0.0 39.80 4.61 F
1745 2200 0.179092 GCGTGCCTATAAAGTCCCGT 60.179 55.000 0.00 0.0 0.00 5.28 F
2369 2850 1.134901 CTCTCAACCTCGGACGACG 59.865 63.158 0.00 0.0 46.11 5.12 F
2967 4064 0.178944 TTCCAGGACTTGACGGAGGA 60.179 55.000 0.00 0.0 0.00 3.71 F
3045 4155 0.247736 TGTTTTTGGCGTGTGGCTTT 59.752 45.000 0.00 0.0 42.94 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2369 2850 1.143305 CCATCATCATTCTCGTCGGC 58.857 55.000 0.0 0.0 0.00 5.54 R
2498 3006 4.217767 TGCAACTACTACGGCATAGATAGG 59.782 45.833 0.0 0.0 34.65 2.57 R
2950 4047 0.247736 CTTCCTCCGTCAAGTCCTGG 59.752 60.000 0.0 0.0 0.00 4.45 R
3239 4356 1.135257 CGTGAGTTCTAGCCCAGACAG 60.135 57.143 0.0 0.0 31.12 3.51 R
4336 12136 1.634973 TGGGAGATCAAGGCACATCAA 59.365 47.619 0.0 0.0 0.00 2.57 R
4996 12825 0.763652 TTGGTTAAGGTGCCCGTGTA 59.236 50.000 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
407 414 0.112412 GGGAAAGACAAGGGGAAGCA 59.888 55.000 0.00 0.00 0.00 3.91
521 530 2.038863 TGGGCTTCTTGGTCCTCTTA 57.961 50.000 0.00 0.00 0.00 2.10
566 575 0.625316 TAGTAGGGGCCGTGACAGTA 59.375 55.000 9.43 0.00 0.00 2.74
567 576 0.032416 AGTAGGGGCCGTGACAGTAT 60.032 55.000 9.43 0.00 0.00 2.12
568 577 0.828677 GTAGGGGCCGTGACAGTATT 59.171 55.000 9.43 0.00 0.00 1.89
569 578 1.208776 GTAGGGGCCGTGACAGTATTT 59.791 52.381 9.43 0.00 0.00 1.40
570 579 1.575419 AGGGGCCGTGACAGTATTTA 58.425 50.000 0.00 0.00 0.00 1.40
571 580 1.910671 AGGGGCCGTGACAGTATTTAA 59.089 47.619 0.00 0.00 0.00 1.52
572 581 2.508300 AGGGGCCGTGACAGTATTTAAT 59.492 45.455 0.00 0.00 0.00 1.40
573 582 3.053917 AGGGGCCGTGACAGTATTTAATT 60.054 43.478 0.00 0.00 0.00 1.40
574 583 3.066203 GGGGCCGTGACAGTATTTAATTG 59.934 47.826 0.00 0.00 0.00 2.32
575 584 3.942748 GGGCCGTGACAGTATTTAATTGA 59.057 43.478 0.00 0.00 0.00 2.57
576 585 4.396790 GGGCCGTGACAGTATTTAATTGAA 59.603 41.667 0.00 0.00 0.00 2.69
577 586 5.448632 GGGCCGTGACAGTATTTAATTGAAG 60.449 44.000 0.00 0.00 0.00 3.02
578 587 5.353123 GGCCGTGACAGTATTTAATTGAAGA 59.647 40.000 0.00 0.00 0.00 2.87
579 588 6.128117 GGCCGTGACAGTATTTAATTGAAGAA 60.128 38.462 0.00 0.00 0.00 2.52
580 589 6.961554 GCCGTGACAGTATTTAATTGAAGAAG 59.038 38.462 0.00 0.00 0.00 2.85
581 590 7.148474 GCCGTGACAGTATTTAATTGAAGAAGA 60.148 37.037 0.00 0.00 0.00 2.87
582 591 8.169268 CCGTGACAGTATTTAATTGAAGAAGAC 58.831 37.037 0.00 0.00 0.00 3.01
583 592 8.926710 CGTGACAGTATTTAATTGAAGAAGACT 58.073 33.333 0.00 0.00 0.00 3.24
594 603 9.965824 TTAATTGAAGAAGACTTTTTCATGGAC 57.034 29.630 18.77 0.00 36.39 4.02
595 604 7.830099 ATTGAAGAAGACTTTTTCATGGACT 57.170 32.000 18.77 3.31 36.39 3.85
596 605 8.924511 ATTGAAGAAGACTTTTTCATGGACTA 57.075 30.769 18.77 6.42 36.39 2.59
597 606 7.730364 TGAAGAAGACTTTTTCATGGACTAC 57.270 36.000 15.25 0.00 36.39 2.73
598 607 6.423905 TGAAGAAGACTTTTTCATGGACTACG 59.576 38.462 15.25 0.00 36.39 3.51
599 608 6.097915 AGAAGACTTTTTCATGGACTACGA 57.902 37.500 0.00 0.00 0.00 3.43
600 609 6.159988 AGAAGACTTTTTCATGGACTACGAG 58.840 40.000 0.00 0.00 0.00 4.18
601 610 5.723672 AGACTTTTTCATGGACTACGAGA 57.276 39.130 0.00 0.00 0.00 4.04
602 611 5.471257 AGACTTTTTCATGGACTACGAGAC 58.529 41.667 0.00 0.00 0.00 3.36
603 612 4.235360 ACTTTTTCATGGACTACGAGACG 58.765 43.478 0.00 0.00 0.00 4.18
604 613 2.273370 TTTCATGGACTACGAGACGC 57.727 50.000 0.00 0.00 0.00 5.19
605 614 1.460504 TTCATGGACTACGAGACGCT 58.539 50.000 0.00 0.00 0.00 5.07
606 615 1.460504 TCATGGACTACGAGACGCTT 58.539 50.000 0.00 0.00 0.00 4.68
607 616 2.635714 TCATGGACTACGAGACGCTTA 58.364 47.619 0.00 0.00 0.00 3.09
608 617 3.011818 TCATGGACTACGAGACGCTTAA 58.988 45.455 0.00 0.00 0.00 1.85
609 618 3.441222 TCATGGACTACGAGACGCTTAAA 59.559 43.478 0.00 0.00 0.00 1.52
610 619 3.482722 TGGACTACGAGACGCTTAAAG 57.517 47.619 0.00 0.00 0.00 1.85
611 620 2.816087 TGGACTACGAGACGCTTAAAGT 59.184 45.455 0.00 0.00 0.00 2.66
612 621 3.169733 GGACTACGAGACGCTTAAAGTG 58.830 50.000 0.00 0.00 0.00 3.16
613 622 3.120060 GGACTACGAGACGCTTAAAGTGA 60.120 47.826 0.00 0.00 0.00 3.41
614 623 3.819537 ACTACGAGACGCTTAAAGTGAC 58.180 45.455 0.00 0.00 0.00 3.67
615 624 2.787601 ACGAGACGCTTAAAGTGACA 57.212 45.000 0.00 0.00 0.00 3.58
616 625 3.299340 ACGAGACGCTTAAAGTGACAT 57.701 42.857 0.00 0.00 0.00 3.06
617 626 3.243336 ACGAGACGCTTAAAGTGACATC 58.757 45.455 0.00 0.00 0.00 3.06
618 627 2.276540 CGAGACGCTTAAAGTGACATCG 59.723 50.000 0.00 0.00 0.00 3.84
619 628 3.243336 GAGACGCTTAAAGTGACATCGT 58.757 45.455 0.00 0.00 0.00 3.73
620 629 3.243336 AGACGCTTAAAGTGACATCGTC 58.757 45.455 0.00 0.00 43.30 4.20
621 630 2.984471 GACGCTTAAAGTGACATCGTCA 59.016 45.455 6.95 0.00 42.73 4.35
622 631 3.386486 ACGCTTAAAGTGACATCGTCAA 58.614 40.909 0.00 0.00 44.49 3.18
623 632 3.994392 ACGCTTAAAGTGACATCGTCAAT 59.006 39.130 0.00 0.00 44.49 2.57
624 633 4.091509 ACGCTTAAAGTGACATCGTCAATC 59.908 41.667 0.00 0.00 44.49 2.67
625 634 4.327357 CGCTTAAAGTGACATCGTCAATCT 59.673 41.667 0.00 0.00 44.49 2.40
626 635 5.163953 CGCTTAAAGTGACATCGTCAATCTT 60.164 40.000 0.00 0.00 44.49 2.40
627 636 6.034577 CGCTTAAAGTGACATCGTCAATCTTA 59.965 38.462 0.00 0.00 44.49 2.10
628 637 7.411480 CGCTTAAAGTGACATCGTCAATCTTAA 60.411 37.037 0.00 5.48 44.49 1.85
629 638 8.227791 GCTTAAAGTGACATCGTCAATCTTAAA 58.772 33.333 0.00 0.00 44.49 1.52
632 641 8.955061 AAAGTGACATCGTCAATCTTAAAATG 57.045 30.769 0.00 0.00 44.49 2.32
633 642 7.905604 AGTGACATCGTCAATCTTAAAATGA 57.094 32.000 0.00 0.00 44.49 2.57
634 643 8.498054 AGTGACATCGTCAATCTTAAAATGAT 57.502 30.769 0.00 0.00 44.49 2.45
635 644 9.599866 AGTGACATCGTCAATCTTAAAATGATA 57.400 29.630 0.00 0.00 44.49 2.15
636 645 9.638300 GTGACATCGTCAATCTTAAAATGATAC 57.362 33.333 0.00 0.00 44.49 2.24
637 646 8.539674 TGACATCGTCAATCTTAAAATGATACG 58.460 33.333 0.00 0.00 39.78 3.06
638 647 7.345192 ACATCGTCAATCTTAAAATGATACGC 58.655 34.615 0.00 0.00 30.51 4.42
639 648 6.281848 TCGTCAATCTTAAAATGATACGCC 57.718 37.500 0.00 0.00 30.51 5.68
640 649 5.813157 TCGTCAATCTTAAAATGATACGCCA 59.187 36.000 0.00 0.00 30.51 5.69
641 650 6.019075 TCGTCAATCTTAAAATGATACGCCAG 60.019 38.462 0.00 0.00 30.51 4.85
642 651 6.019075 CGTCAATCTTAAAATGATACGCCAGA 60.019 38.462 0.00 0.00 0.00 3.86
643 652 7.307396 CGTCAATCTTAAAATGATACGCCAGAT 60.307 37.037 0.00 0.00 0.00 2.90
644 653 8.988934 GTCAATCTTAAAATGATACGCCAGATA 58.011 33.333 0.00 0.00 0.00 1.98
645 654 8.988934 TCAATCTTAAAATGATACGCCAGATAC 58.011 33.333 0.00 0.00 0.00 2.24
646 655 8.993121 CAATCTTAAAATGATACGCCAGATACT 58.007 33.333 0.00 0.00 0.00 2.12
647 656 8.764524 ATCTTAAAATGATACGCCAGATACTC 57.235 34.615 0.00 0.00 0.00 2.59
648 657 6.861572 TCTTAAAATGATACGCCAGATACTCG 59.138 38.462 0.00 0.00 0.00 4.18
649 658 4.585955 AAATGATACGCCAGATACTCGT 57.414 40.909 0.00 0.00 39.88 4.18
650 659 5.700722 AAATGATACGCCAGATACTCGTA 57.299 39.130 0.00 0.00 41.92 3.43
651 660 4.948608 ATGATACGCCAGATACTCGTAG 57.051 45.455 0.00 0.00 41.17 3.51
652 661 3.999046 TGATACGCCAGATACTCGTAGA 58.001 45.455 0.00 0.00 41.17 2.59
653 662 4.383173 TGATACGCCAGATACTCGTAGAA 58.617 43.478 0.00 0.00 41.17 2.10
654 663 4.818005 TGATACGCCAGATACTCGTAGAAA 59.182 41.667 0.00 0.00 41.17 2.52
655 664 5.472478 TGATACGCCAGATACTCGTAGAAAT 59.528 40.000 0.00 0.00 41.17 2.17
656 665 6.652062 TGATACGCCAGATACTCGTAGAAATA 59.348 38.462 0.00 0.00 41.17 1.40
657 666 5.359716 ACGCCAGATACTCGTAGAAATAG 57.640 43.478 0.00 0.00 34.09 1.73
658 667 5.061853 ACGCCAGATACTCGTAGAAATAGA 58.938 41.667 0.00 0.00 34.09 1.98
659 668 5.179742 ACGCCAGATACTCGTAGAAATAGAG 59.820 44.000 0.00 0.00 34.09 2.43
660 669 5.179742 CGCCAGATACTCGTAGAAATAGAGT 59.820 44.000 2.85 2.85 45.85 3.24
661 670 6.375377 GCCAGATACTCGTAGAAATAGAGTG 58.625 44.000 7.50 0.00 44.05 3.51
662 671 6.016943 GCCAGATACTCGTAGAAATAGAGTGT 60.017 42.308 7.50 1.01 44.05 3.55
663 672 7.172875 GCCAGATACTCGTAGAAATAGAGTGTA 59.827 40.741 7.50 0.00 44.05 2.90
664 673 8.497554 CCAGATACTCGTAGAAATAGAGTGTAC 58.502 40.741 7.50 0.00 44.05 2.90
665 674 9.263538 CAGATACTCGTAGAAATAGAGTGTACT 57.736 37.037 7.50 2.30 44.05 2.73
669 678 7.038659 ACTCGTAGAAATAGAGTGTACTACGT 58.961 38.462 18.82 0.00 46.83 3.57
670 679 7.009999 ACTCGTAGAAATAGAGTGTACTACGTG 59.990 40.741 18.82 18.42 46.83 4.49
671 680 6.813649 TCGTAGAAATAGAGTGTACTACGTGT 59.186 38.462 18.82 0.00 46.83 4.49
672 681 6.898716 CGTAGAAATAGAGTGTACTACGTGTG 59.101 42.308 0.12 0.00 44.04 3.82
673 682 5.638783 AGAAATAGAGTGTACTACGTGTGC 58.361 41.667 0.00 0.00 0.00 4.57
674 683 5.182570 AGAAATAGAGTGTACTACGTGTGCA 59.817 40.000 0.00 1.28 38.92 4.57
675 684 5.578005 AATAGAGTGTACTACGTGTGCAT 57.422 39.130 0.00 0.00 42.86 3.96
676 685 3.217599 AGAGTGTACTACGTGTGCATG 57.782 47.619 0.00 0.00 42.86 4.06
677 686 1.654105 GAGTGTACTACGTGTGCATGC 59.346 52.381 11.82 11.82 42.86 4.06
678 687 0.365523 GTGTACTACGTGTGCATGCG 59.634 55.000 14.09 10.60 42.86 4.73
679 688 0.038983 TGTACTACGTGTGCATGCGT 60.039 50.000 19.36 19.36 44.02 5.24
680 689 0.638746 GTACTACGTGTGCATGCGTC 59.361 55.000 19.07 9.43 41.77 5.19
681 690 0.457166 TACTACGTGTGCATGCGTCC 60.457 55.000 19.07 3.96 41.77 4.79
682 691 1.736282 CTACGTGTGCATGCGTCCA 60.736 57.895 19.07 6.82 41.77 4.02
683 692 1.079474 TACGTGTGCATGCGTCCAT 60.079 52.632 19.07 0.77 41.77 3.41
684 693 0.173708 TACGTGTGCATGCGTCCATA 59.826 50.000 19.07 0.00 41.77 2.74
685 694 0.461870 ACGTGTGCATGCGTCCATAT 60.462 50.000 14.09 0.00 36.54 1.78
686 695 1.202475 ACGTGTGCATGCGTCCATATA 60.202 47.619 14.09 0.00 36.54 0.86
687 696 1.456923 CGTGTGCATGCGTCCATATAG 59.543 52.381 14.09 0.34 0.00 1.31
688 697 1.800586 GTGTGCATGCGTCCATATAGG 59.199 52.381 14.09 0.00 39.47 2.57
689 698 1.416030 TGTGCATGCGTCCATATAGGT 59.584 47.619 14.09 0.00 39.02 3.08
690 699 1.800586 GTGCATGCGTCCATATAGGTG 59.199 52.381 14.09 0.00 39.02 4.00
691 700 1.270785 TGCATGCGTCCATATAGGTGG 60.271 52.381 14.09 0.00 40.76 4.61
692 701 1.945819 GCATGCGTCCATATAGGTGGG 60.946 57.143 0.00 0.00 39.80 4.61
693 702 1.347707 CATGCGTCCATATAGGTGGGT 59.652 52.381 0.00 0.00 39.80 4.51
694 703 0.756294 TGCGTCCATATAGGTGGGTG 59.244 55.000 0.00 0.00 39.80 4.61
695 704 0.034896 GCGTCCATATAGGTGGGTGG 59.965 60.000 0.00 0.00 39.80 4.61
696 705 0.685097 CGTCCATATAGGTGGGTGGG 59.315 60.000 0.00 0.00 39.80 4.61
697 706 1.815757 GTCCATATAGGTGGGTGGGT 58.184 55.000 0.00 0.00 39.80 4.51
698 707 1.420138 GTCCATATAGGTGGGTGGGTG 59.580 57.143 0.00 0.00 39.80 4.61
699 708 1.010294 TCCATATAGGTGGGTGGGTGT 59.990 52.381 0.00 0.00 39.80 4.16
700 709 2.250539 TCCATATAGGTGGGTGGGTGTA 59.749 50.000 0.00 0.00 39.80 2.90
701 710 3.116120 TCCATATAGGTGGGTGGGTGTAT 60.116 47.826 0.00 0.00 39.80 2.29
702 711 3.655777 CCATATAGGTGGGTGGGTGTATT 59.344 47.826 0.00 0.00 35.55 1.89
703 712 4.847512 CCATATAGGTGGGTGGGTGTATTA 59.152 45.833 0.00 0.00 35.55 0.98
704 713 5.311121 CCATATAGGTGGGTGGGTGTATTAA 59.689 44.000 0.00 0.00 35.55 1.40
705 714 4.783560 ATAGGTGGGTGGGTGTATTAAC 57.216 45.455 0.00 0.00 0.00 2.01
706 715 1.279846 AGGTGGGTGGGTGTATTAACG 59.720 52.381 0.00 0.00 0.00 3.18
707 716 1.278699 GGTGGGTGGGTGTATTAACGA 59.721 52.381 0.00 0.00 0.00 3.85
708 717 2.290197 GGTGGGTGGGTGTATTAACGAA 60.290 50.000 0.00 0.00 0.00 3.85
709 718 2.743664 GTGGGTGGGTGTATTAACGAAC 59.256 50.000 0.00 0.00 0.00 3.95
710 719 2.001872 GGGTGGGTGTATTAACGAACG 58.998 52.381 0.00 0.00 0.00 3.95
711 720 2.612721 GGGTGGGTGTATTAACGAACGT 60.613 50.000 0.00 0.00 0.00 3.99
712 721 3.066380 GGTGGGTGTATTAACGAACGTT 58.934 45.455 16.31 16.31 41.65 3.99
713 722 3.498018 GGTGGGTGTATTAACGAACGTTT 59.502 43.478 17.19 3.96 39.31 3.60
714 723 4.377328 GGTGGGTGTATTAACGAACGTTTC 60.377 45.833 17.19 7.37 39.31 2.78
715 724 4.448732 GTGGGTGTATTAACGAACGTTTCT 59.551 41.667 17.19 8.24 39.31 2.52
716 725 4.448395 TGGGTGTATTAACGAACGTTTCTG 59.552 41.667 17.19 0.00 39.31 3.02
717 726 4.448732 GGGTGTATTAACGAACGTTTCTGT 59.551 41.667 17.19 0.00 39.31 3.41
718 727 5.388786 GGGTGTATTAACGAACGTTTCTGTC 60.389 44.000 17.19 6.50 39.31 3.51
719 728 5.403466 GGTGTATTAACGAACGTTTCTGTCT 59.597 40.000 17.19 0.00 39.31 3.41
720 729 6.286941 GTGTATTAACGAACGTTTCTGTCTG 58.713 40.000 17.19 0.00 39.31 3.51
721 730 4.985044 ATTAACGAACGTTTCTGTCTGG 57.015 40.909 17.19 0.00 39.31 3.86
722 731 2.304751 AACGAACGTTTCTGTCTGGT 57.695 45.000 0.46 0.00 34.22 4.00
723 732 1.567504 ACGAACGTTTCTGTCTGGTG 58.432 50.000 0.46 0.00 0.00 4.17
724 733 1.134907 ACGAACGTTTCTGTCTGGTGT 60.135 47.619 0.46 0.00 0.00 4.16
725 734 1.521423 CGAACGTTTCTGTCTGGTGTC 59.479 52.381 0.46 0.00 0.00 3.67
726 735 2.546778 GAACGTTTCTGTCTGGTGTCA 58.453 47.619 0.46 0.00 0.00 3.58
727 736 2.684001 ACGTTTCTGTCTGGTGTCAA 57.316 45.000 0.00 0.00 0.00 3.18
728 737 2.980568 ACGTTTCTGTCTGGTGTCAAA 58.019 42.857 0.00 0.00 0.00 2.69
729 738 3.340034 ACGTTTCTGTCTGGTGTCAAAA 58.660 40.909 0.00 0.00 0.00 2.44
730 739 3.754323 ACGTTTCTGTCTGGTGTCAAAAA 59.246 39.130 0.00 0.00 0.00 1.94
731 740 4.142687 ACGTTTCTGTCTGGTGTCAAAAAG 60.143 41.667 0.00 0.00 0.00 2.27
732 741 4.094294 CGTTTCTGTCTGGTGTCAAAAAGA 59.906 41.667 0.00 0.00 0.00 2.52
742 751 2.280764 GTCAAAAAGACGTGCGAGTC 57.719 50.000 0.00 3.48 37.53 3.36
743 752 1.591158 GTCAAAAAGACGTGCGAGTCA 59.409 47.619 12.84 0.00 43.24 3.41
744 753 1.591158 TCAAAAAGACGTGCGAGTCAC 59.409 47.619 12.84 0.00 43.24 3.67
770 779 3.706373 GCAGCGAGGGAGGTGGAA 61.706 66.667 0.00 0.00 39.75 3.53
771 780 2.581354 CAGCGAGGGAGGTGGAAG 59.419 66.667 0.00 0.00 36.11 3.46
772 781 2.685380 AGCGAGGGAGGTGGAAGG 60.685 66.667 0.00 0.00 0.00 3.46
773 782 3.003763 GCGAGGGAGGTGGAAGGT 61.004 66.667 0.00 0.00 0.00 3.50
774 783 2.982130 CGAGGGAGGTGGAAGGTG 59.018 66.667 0.00 0.00 0.00 4.00
775 784 2.660064 CGAGGGAGGTGGAAGGTGG 61.660 68.421 0.00 0.00 0.00 4.61
776 785 1.539124 GAGGGAGGTGGAAGGTGGT 60.539 63.158 0.00 0.00 0.00 4.16
777 786 1.842381 GAGGGAGGTGGAAGGTGGTG 61.842 65.000 0.00 0.00 0.00 4.17
778 787 1.846124 GGGAGGTGGAAGGTGGTGA 60.846 63.158 0.00 0.00 0.00 4.02
779 788 1.375326 GGAGGTGGAAGGTGGTGAC 59.625 63.158 0.00 0.00 0.00 3.67
780 789 1.004918 GAGGTGGAAGGTGGTGACG 60.005 63.158 0.00 0.00 0.00 4.35
781 790 1.755393 GAGGTGGAAGGTGGTGACGT 61.755 60.000 0.00 0.00 0.00 4.34
782 791 1.301479 GGTGGAAGGTGGTGACGTC 60.301 63.158 9.11 9.11 0.00 4.34
812 821 3.706373 GCAGCGAGGGAGGTGGAA 61.706 66.667 0.00 0.00 39.75 3.53
817 826 2.660064 CGAGGGAGGTGGAAGGTGG 61.660 68.421 0.00 0.00 0.00 4.61
819 828 1.842381 GAGGGAGGTGGAAGGTGGTG 61.842 65.000 0.00 0.00 0.00 4.17
820 829 1.846124 GGGAGGTGGAAGGTGGTGA 60.846 63.158 0.00 0.00 0.00 4.02
821 830 1.375326 GGAGGTGGAAGGTGGTGAC 59.625 63.158 0.00 0.00 0.00 3.67
825 835 1.444250 GTGGAAGGTGGTGACGTCA 59.556 57.895 15.76 15.76 0.00 4.35
843 853 4.088762 CACGTGGACGGCATGCAC 62.089 66.667 21.36 7.57 45.78 4.57
867 877 3.118775 TCCGTCGGCTGTTACTAGTAGTA 60.119 47.826 6.34 5.90 0.00 1.82
868 878 3.247173 CCGTCGGCTGTTACTAGTAGTAG 59.753 52.174 9.90 2.87 31.47 2.57
869 879 3.868077 CGTCGGCTGTTACTAGTAGTAGT 59.132 47.826 14.57 14.57 42.49 2.73
870 880 5.043903 CGTCGGCTGTTACTAGTAGTAGTA 58.956 45.833 12.58 12.58 40.23 1.82
927 938 4.379243 CAGCTGCCTCCGTCCGTT 62.379 66.667 0.00 0.00 0.00 4.44
943 954 1.613520 CCGTTCCCTTTTCTTCCTCCC 60.614 57.143 0.00 0.00 0.00 4.30
947 958 1.443575 TCCCTTTTCTTCCTCCCCCTA 59.556 52.381 0.00 0.00 0.00 3.53
970 981 4.404691 CAACTCCTGCAGGGTTCC 57.595 61.111 32.23 0.00 36.25 3.62
1104 1133 2.359967 GGAGCTGCGGGTAGAGGTT 61.360 63.158 0.00 0.00 0.00 3.50
1224 1289 2.034812 GGTGGTGCCGTTGACATTTTTA 59.965 45.455 0.00 0.00 0.00 1.52
1231 1296 6.349033 GGTGCCGTTGACATTTTTATAGTCTT 60.349 38.462 0.00 0.00 33.56 3.01
1232 1297 6.741358 GTGCCGTTGACATTTTTATAGTCTTC 59.259 38.462 0.00 0.00 33.56 2.87
1233 1298 6.653320 TGCCGTTGACATTTTTATAGTCTTCT 59.347 34.615 0.00 0.00 33.56 2.85
1234 1299 7.820386 TGCCGTTGACATTTTTATAGTCTTCTA 59.180 33.333 0.00 0.00 33.56 2.10
1320 1711 8.051468 TCCATCCCAAATTACTAACATCCATA 57.949 34.615 0.00 0.00 0.00 2.74
1322 1713 9.312904 CCATCCCAAATTACTAACATCCATATT 57.687 33.333 0.00 0.00 0.00 1.28
1362 1754 8.735692 ATTAAATAATTTGCCATGAAGGGTTG 57.264 30.769 0.00 0.00 38.09 3.77
1383 1775 7.224949 GGGTTGTGATTCTTCATTAGCTAGTAC 59.775 40.741 0.00 0.00 33.56 2.73
1384 1776 7.982354 GGTTGTGATTCTTCATTAGCTAGTACT 59.018 37.037 0.00 0.00 33.56 2.73
1385 1777 9.026074 GTTGTGATTCTTCATTAGCTAGTACTC 57.974 37.037 0.00 0.00 33.56 2.59
1386 1778 7.717568 TGTGATTCTTCATTAGCTAGTACTCC 58.282 38.462 0.00 0.00 33.56 3.85
1387 1779 7.149307 GTGATTCTTCATTAGCTAGTACTCCC 58.851 42.308 0.00 0.00 33.56 4.30
1388 1780 7.014808 GTGATTCTTCATTAGCTAGTACTCCCT 59.985 40.741 0.00 0.00 33.56 4.20
1389 1781 6.963083 TTCTTCATTAGCTAGTACTCCCTC 57.037 41.667 0.00 0.00 0.00 4.30
1390 1782 6.268855 TCTTCATTAGCTAGTACTCCCTCT 57.731 41.667 0.00 0.00 0.00 3.69
1391 1783 6.065374 TCTTCATTAGCTAGTACTCCCTCTG 58.935 44.000 0.00 0.00 0.00 3.35
1392 1784 5.390087 TCATTAGCTAGTACTCCCTCTGT 57.610 43.478 0.00 0.00 0.00 3.41
1393 1785 5.767670 TCATTAGCTAGTACTCCCTCTGTT 58.232 41.667 0.00 0.00 0.00 3.16
1394 1786 6.195700 TCATTAGCTAGTACTCCCTCTGTTT 58.804 40.000 0.00 0.00 0.00 2.83
1395 1787 6.321690 TCATTAGCTAGTACTCCCTCTGTTTC 59.678 42.308 0.00 0.00 0.00 2.78
1396 1788 4.325084 AGCTAGTACTCCCTCTGTTTCT 57.675 45.455 0.00 0.00 0.00 2.52
1397 1789 4.274978 AGCTAGTACTCCCTCTGTTTCTC 58.725 47.826 0.00 0.00 0.00 2.87
1398 1790 4.017808 GCTAGTACTCCCTCTGTTTCTCA 58.982 47.826 0.00 0.00 0.00 3.27
1399 1791 4.463186 GCTAGTACTCCCTCTGTTTCTCAA 59.537 45.833 0.00 0.00 0.00 3.02
1400 1792 5.128008 GCTAGTACTCCCTCTGTTTCTCAAT 59.872 44.000 0.00 0.00 0.00 2.57
1401 1793 6.321690 GCTAGTACTCCCTCTGTTTCTCAATA 59.678 42.308 0.00 0.00 0.00 1.90
1402 1794 7.014808 GCTAGTACTCCCTCTGTTTCTCAATAT 59.985 40.741 0.00 0.00 0.00 1.28
1403 1795 9.575868 CTAGTACTCCCTCTGTTTCTCAATATA 57.424 37.037 0.00 0.00 0.00 0.86
1404 1796 8.840200 AGTACTCCCTCTGTTTCTCAATATAA 57.160 34.615 0.00 0.00 0.00 0.98
1405 1797 8.919145 AGTACTCCCTCTGTTTCTCAATATAAG 58.081 37.037 0.00 0.00 0.00 1.73
1406 1798 7.741554 ACTCCCTCTGTTTCTCAATATAAGT 57.258 36.000 0.00 0.00 0.00 2.24
1407 1799 7.787028 ACTCCCTCTGTTTCTCAATATAAGTC 58.213 38.462 0.00 0.00 0.00 3.01
1408 1800 7.621683 ACTCCCTCTGTTTCTCAATATAAGTCT 59.378 37.037 0.00 0.00 0.00 3.24
1409 1801 8.380742 TCCCTCTGTTTCTCAATATAAGTCTT 57.619 34.615 0.00 0.00 0.00 3.01
1410 1802 8.826765 TCCCTCTGTTTCTCAATATAAGTCTTT 58.173 33.333 0.00 0.00 0.00 2.52
1411 1803 9.454859 CCCTCTGTTTCTCAATATAAGTCTTTT 57.545 33.333 0.00 0.00 0.00 2.27
1499 1891 8.783833 ACATCTATATACATCCGTACGTAGTT 57.216 34.615 15.21 0.00 37.78 2.24
1500 1892 8.663025 ACATCTATATACATCCGTACGTAGTTG 58.337 37.037 15.21 12.91 37.78 3.16
1501 1893 8.876790 CATCTATATACATCCGTACGTAGTTGA 58.123 37.037 15.21 3.96 37.78 3.18
1502 1894 9.610705 ATCTATATACATCCGTACGTAGTTGAT 57.389 33.333 15.21 6.33 37.78 2.57
1506 1898 9.999009 ATATACATCCGTACGTAGTTGATATTG 57.001 33.333 15.21 2.26 37.78 1.90
1507 1899 6.381481 ACATCCGTACGTAGTTGATATTGA 57.619 37.500 15.21 0.00 37.78 2.57
1508 1900 6.798482 ACATCCGTACGTAGTTGATATTGAA 58.202 36.000 15.21 0.00 37.78 2.69
1509 1901 7.259882 ACATCCGTACGTAGTTGATATTGAAA 58.740 34.615 15.21 0.00 37.78 2.69
1510 1902 7.924412 ACATCCGTACGTAGTTGATATTGAAAT 59.076 33.333 15.21 0.00 37.78 2.17
1511 1903 7.919313 TCCGTACGTAGTTGATATTGAAATC 57.081 36.000 15.21 0.00 37.78 2.17
1512 1904 7.709947 TCCGTACGTAGTTGATATTGAAATCT 58.290 34.615 15.21 0.00 37.78 2.40
1513 1905 7.859377 TCCGTACGTAGTTGATATTGAAATCTC 59.141 37.037 15.21 0.00 37.78 2.75
1514 1906 7.646526 CCGTACGTAGTTGATATTGAAATCTCA 59.353 37.037 15.21 0.00 37.78 3.27
1515 1907 9.016623 CGTACGTAGTTGATATTGAAATCTCAA 57.983 33.333 7.22 1.03 42.16 3.02
1533 1925 9.914131 AAATCTCAAAAAGACTTGTATTTAGGC 57.086 29.630 0.00 0.00 36.65 3.93
1534 1926 8.635765 ATCTCAAAAAGACTTGTATTTAGGCA 57.364 30.769 0.00 0.00 36.65 4.75
1535 1927 8.635765 TCTCAAAAAGACTTGTATTTAGGCAT 57.364 30.769 0.00 0.00 0.00 4.40
1536 1928 8.514594 TCTCAAAAAGACTTGTATTTAGGCATG 58.485 33.333 0.00 0.00 0.00 4.06
1537 1929 7.601856 TCAAAAAGACTTGTATTTAGGCATGG 58.398 34.615 0.00 0.00 0.00 3.66
1538 1930 7.450014 TCAAAAAGACTTGTATTTAGGCATGGA 59.550 33.333 0.00 0.00 0.00 3.41
1539 1931 7.396540 AAAAGACTTGTATTTAGGCATGGAG 57.603 36.000 0.00 0.00 0.00 3.86
1540 1932 5.041191 AGACTTGTATTTAGGCATGGAGG 57.959 43.478 0.00 0.00 0.00 4.30
1541 1933 4.137543 GACTTGTATTTAGGCATGGAGGG 58.862 47.826 0.00 0.00 0.00 4.30
1542 1934 3.785887 ACTTGTATTTAGGCATGGAGGGA 59.214 43.478 0.00 0.00 0.00 4.20
1543 1935 4.141390 ACTTGTATTTAGGCATGGAGGGAG 60.141 45.833 0.00 0.00 0.00 4.30
1544 1936 3.393687 TGTATTTAGGCATGGAGGGAGT 58.606 45.455 0.00 0.00 0.00 3.85
1545 1937 4.562767 TGTATTTAGGCATGGAGGGAGTA 58.437 43.478 0.00 0.00 0.00 2.59
1546 1938 4.972568 TGTATTTAGGCATGGAGGGAGTAA 59.027 41.667 0.00 0.00 0.00 2.24
1547 1939 5.610982 TGTATTTAGGCATGGAGGGAGTAAT 59.389 40.000 0.00 0.00 0.00 1.89
1563 1957 9.668497 GAGGGAGTAATAAATTTGTCTGTACTT 57.332 33.333 0.00 0.00 0.00 2.24
1626 2020 2.159894 GCGCGGTAAAAGCAATTTTTCC 60.160 45.455 8.83 0.00 39.61 3.13
1635 2029 3.675563 AATTTTTCCCGCGCGCCA 61.676 55.556 27.36 9.98 0.00 5.69
1694 2149 2.774799 GCGCGGGAGAAAATGGCAT 61.775 57.895 8.83 0.00 0.00 4.40
1745 2200 0.179092 GCGTGCCTATAAAGTCCCGT 60.179 55.000 0.00 0.00 0.00 5.28
1768 2241 3.947841 GCCACGCGCACAGAACAA 61.948 61.111 5.73 0.00 37.47 2.83
1910 2391 1.535833 CTGGTACTCCGCCGAGATAT 58.464 55.000 9.16 0.00 38.52 1.63
2116 2597 2.885861 GACCACTCTCGGCGACAT 59.114 61.111 4.99 0.00 0.00 3.06
2132 2613 2.437895 ATCGCCGTCTCCTCGTCA 60.438 61.111 0.00 0.00 0.00 4.35
2324 2805 2.729692 AGGTCGTTCTTCACCTCGT 58.270 52.632 0.00 0.00 38.83 4.18
2369 2850 1.134901 CTCTCAACCTCGGACGACG 59.865 63.158 0.00 0.00 46.11 5.12
2401 2888 2.634453 TGATGATGGTGATGGTAGCGAT 59.366 45.455 0.00 0.00 0.00 4.58
2404 2891 3.466836 TGATGGTGATGGTAGCGATTTC 58.533 45.455 0.00 0.00 0.00 2.17
2614 3134 2.178025 GCTGCATTTTACCGCGCA 59.822 55.556 8.75 0.00 0.00 6.09
2655 3179 1.656441 CTTTTCAGTGCGGCTGCTT 59.344 52.632 20.27 3.97 44.66 3.91
2849 3384 7.721286 ATCAGATTTATCCTAACGAAGCAAG 57.279 36.000 0.00 0.00 0.00 4.01
2860 3395 4.364415 AACGAAGCAAGCAACAAACTTA 57.636 36.364 0.00 0.00 0.00 2.24
2893 3826 9.975218 AGGTTCTTTTATATTTGTCTACATGGT 57.025 29.630 0.00 0.00 0.00 3.55
2903 3836 6.791867 TTTGTCTACATGGTATCTAGCACT 57.208 37.500 0.00 0.00 36.42 4.40
2904 3837 7.891498 TTTGTCTACATGGTATCTAGCACTA 57.109 36.000 0.00 0.00 36.42 2.74
2906 3839 7.273320 TGTCTACATGGTATCTAGCACTAAC 57.727 40.000 0.00 0.00 36.42 2.34
2907 3840 6.017357 TGTCTACATGGTATCTAGCACTAACG 60.017 42.308 0.00 0.00 36.42 3.18
2909 3842 5.184340 ACATGGTATCTAGCACTAACGTC 57.816 43.478 0.00 0.00 36.42 4.34
2910 3843 4.643334 ACATGGTATCTAGCACTAACGTCA 59.357 41.667 0.00 0.00 36.42 4.35
2913 3846 4.277672 TGGTATCTAGCACTAACGTCATCC 59.722 45.833 0.00 0.00 0.00 3.51
2915 3848 4.839668 ATCTAGCACTAACGTCATCCTC 57.160 45.455 0.00 0.00 0.00 3.71
2916 3849 2.950309 TCTAGCACTAACGTCATCCTCC 59.050 50.000 0.00 0.00 0.00 4.30
2918 3851 2.180276 AGCACTAACGTCATCCTCCTT 58.820 47.619 0.00 0.00 0.00 3.36
2919 3852 2.567615 AGCACTAACGTCATCCTCCTTT 59.432 45.455 0.00 0.00 0.00 3.11
2920 3853 3.008049 AGCACTAACGTCATCCTCCTTTT 59.992 43.478 0.00 0.00 0.00 2.27
2921 3854 3.371285 GCACTAACGTCATCCTCCTTTTC 59.629 47.826 0.00 0.00 0.00 2.29
2922 3855 4.822026 CACTAACGTCATCCTCCTTTTCT 58.178 43.478 0.00 0.00 0.00 2.52
2923 3856 5.238583 CACTAACGTCATCCTCCTTTTCTT 58.761 41.667 0.00 0.00 0.00 2.52
2925 3858 6.872020 CACTAACGTCATCCTCCTTTTCTTAA 59.128 38.462 0.00 0.00 0.00 1.85
2926 3859 7.386848 CACTAACGTCATCCTCCTTTTCTTAAA 59.613 37.037 0.00 0.00 0.00 1.52
2927 3860 7.935210 ACTAACGTCATCCTCCTTTTCTTAAAA 59.065 33.333 0.00 0.00 0.00 1.52
2928 3861 7.576861 AACGTCATCCTCCTTTTCTTAAAAA 57.423 32.000 0.00 0.00 33.42 1.94
2950 4047 6.723131 AAAATCTAGCACTAACGTCCTTTC 57.277 37.500 0.00 0.00 0.00 2.62
2967 4064 0.178944 TTCCAGGACTTGACGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
2994 4091 8.399425 AGTATGTGACTAGAAGTAGACATTTCG 58.601 37.037 0.00 0.00 36.27 3.46
2995 4092 5.399858 TGTGACTAGAAGTAGACATTTCGC 58.600 41.667 0.00 0.00 34.19 4.70
2998 4095 6.586844 GTGACTAGAAGTAGACATTTCGCTTT 59.413 38.462 0.00 0.00 34.19 3.51
2999 4096 6.586463 TGACTAGAAGTAGACATTTCGCTTTG 59.414 38.462 0.00 0.00 0.00 2.77
3001 4098 3.437049 AGAAGTAGACATTTCGCTTTGCC 59.563 43.478 0.00 0.00 0.00 4.52
3018 4127 5.758924 CTTTGCCTGTAGGTTTACTTGTTC 58.241 41.667 0.00 0.00 37.57 3.18
3020 4129 4.385825 TGCCTGTAGGTTTACTTGTTCTG 58.614 43.478 0.00 0.00 37.57 3.02
3033 4143 7.644986 TTACTTGTTCTGTTGGTTGTTTTTG 57.355 32.000 0.00 0.00 0.00 2.44
3045 4155 0.247736 TGTTTTTGGCGTGTGGCTTT 59.752 45.000 0.00 0.00 42.94 3.51
3070 4184 4.346730 TCGTAATTTGTAGGAGACTGGGA 58.653 43.478 0.00 0.00 43.88 4.37
3075 4189 1.081481 TGTAGGAGACTGGGAGGTGA 58.919 55.000 0.00 0.00 43.88 4.02
3095 4209 2.947652 GACCATGGTGTGAGATCCATTG 59.052 50.000 25.52 0.00 41.79 2.82
3097 4211 3.010472 ACCATGGTGTGAGATCCATTGAA 59.990 43.478 18.99 0.00 41.79 2.69
3100 4214 3.942829 TGGTGTGAGATCCATTGAAGAC 58.057 45.455 0.00 0.00 0.00 3.01
3101 4215 2.932614 GGTGTGAGATCCATTGAAGACG 59.067 50.000 0.00 0.00 0.00 4.18
3128 4242 4.525912 AAATTGTTGAAGAGCCCATGAC 57.474 40.909 0.00 0.00 0.00 3.06
3139 4253 0.394762 GCCCATGACCTGAAGCATCA 60.395 55.000 0.00 0.00 0.00 3.07
3156 4270 5.177326 AGCATCAGAAGATTCAGTTCACTC 58.823 41.667 0.00 0.00 30.20 3.51
3157 4271 4.032672 GCATCAGAAGATTCAGTTCACTCG 59.967 45.833 0.00 0.00 30.20 4.18
3158 4272 5.405797 CATCAGAAGATTCAGTTCACTCGA 58.594 41.667 0.00 0.00 30.20 4.04
3159 4273 5.453567 TCAGAAGATTCAGTTCACTCGAA 57.546 39.130 0.00 0.00 0.00 3.71
3160 4274 6.183360 CATCAGAAGATTCAGTTCACTCGAAC 60.183 42.308 0.00 0.00 41.31 3.95
3197 4314 8.074370 AGAAAGTTCTATTTAGCGTTTTTCCAC 58.926 33.333 0.00 0.00 35.34 4.02
3215 4332 4.207165 TCCACAAAGGTTGAAGAGAAAGG 58.793 43.478 0.00 0.00 39.02 3.11
3219 4336 4.645136 ACAAAGGTTGAAGAGAAAGGAACC 59.355 41.667 0.00 0.00 37.01 3.62
3239 4356 3.823330 GGCAGCACATGAGCAGGC 61.823 66.667 16.79 16.79 39.21 4.85
3258 4375 1.404851 GCTGTCTGGGCTAGAACTCAC 60.405 57.143 0.71 0.00 37.12 3.51
3288 4405 8.157476 AGAAATAAATACTGGCTTGACGGATAT 58.843 33.333 0.00 0.00 0.00 1.63
3290 4407 7.907214 ATAAATACTGGCTTGACGGATATTC 57.093 36.000 0.00 0.00 0.00 1.75
3291 4408 5.552870 AATACTGGCTTGACGGATATTCT 57.447 39.130 0.00 0.00 0.00 2.40
3293 4410 6.665992 ATACTGGCTTGACGGATATTCTTA 57.334 37.500 0.00 0.00 0.00 2.10
3294 4411 4.694339 ACTGGCTTGACGGATATTCTTAC 58.306 43.478 0.00 0.00 0.00 2.34
3295 4412 4.058817 CTGGCTTGACGGATATTCTTACC 58.941 47.826 0.00 0.00 0.00 2.85
3296 4413 3.709653 TGGCTTGACGGATATTCTTACCT 59.290 43.478 0.00 0.00 0.00 3.08
3297 4414 4.058817 GGCTTGACGGATATTCTTACCTG 58.941 47.826 0.00 0.00 0.00 4.00
3298 4415 3.495001 GCTTGACGGATATTCTTACCTGC 59.505 47.826 0.00 0.00 0.00 4.85
3358 4705 7.038659 ACTTGTCTAGTAATTCTGCTCACATC 58.961 38.462 0.00 0.00 34.56 3.06
3362 4709 4.991153 AGTAATTCTGCTCACATCGAGA 57.009 40.909 0.00 0.00 45.45 4.04
3377 4763 4.901814 CATCGAGAAACATGATGTTCCAC 58.098 43.478 11.70 6.63 40.14 4.02
3426 4813 8.755028 TGTCTAGTAATTCTGTTATGTGCCTTA 58.245 33.333 0.00 0.00 0.00 2.69
3509 4903 7.894708 TGATGGAGAAGATATTGACTCATCTC 58.105 38.462 0.00 0.00 36.96 2.75
3535 4929 1.523934 GTGACGAGTACACCGGTTTTG 59.476 52.381 2.97 0.00 32.84 2.44
3644 5038 9.455847 GAAATGCATTTGTTCTATAATCTGTCC 57.544 33.333 28.67 4.75 0.00 4.02
3662 5057 5.960811 TCTGTCCCTCATCTTTCTGATAAGT 59.039 40.000 0.00 0.00 33.36 2.24
3671 5066 8.206325 TCATCTTTCTGATAAGTTTCATGCTC 57.794 34.615 0.00 0.00 33.36 4.26
3873 11526 3.527937 AGAGGGGCCTGTTTAGAGTTAA 58.472 45.455 0.84 0.00 0.00 2.01
3949 11649 8.084073 AGGTTTCACAATTGATCATTACACTTG 58.916 33.333 13.59 0.00 35.23 3.16
3952 11652 8.620116 TTCACAATTGATCATTACACTTGAGA 57.380 30.769 13.59 0.00 33.97 3.27
3955 11655 9.338291 CACAATTGATCATTACACTTGAGAAAG 57.662 33.333 13.59 0.00 33.97 2.62
3959 11659 7.692460 TGATCATTACACTTGAGAAAGCATT 57.308 32.000 0.00 0.00 0.00 3.56
3973 11673 6.478344 TGAGAAAGCATTTTTGCGTAAAACAT 59.522 30.769 11.11 5.88 39.27 2.71
4006 11706 5.046807 CCTTTTCTTTTCTACTCCCTCCGTA 60.047 44.000 0.00 0.00 0.00 4.02
4007 11707 6.423776 TTTTCTTTTCTACTCCCTCCGTAA 57.576 37.500 0.00 0.00 0.00 3.18
4008 11708 6.423776 TTTCTTTTCTACTCCCTCCGTAAA 57.576 37.500 0.00 0.00 0.00 2.01
4009 11709 5.397142 TCTTTTCTACTCCCTCCGTAAAC 57.603 43.478 0.00 0.00 0.00 2.01
4010 11710 5.082425 TCTTTTCTACTCCCTCCGTAAACT 58.918 41.667 0.00 0.00 0.00 2.66
4019 11719 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
4020 11720 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4021 11721 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
4022 11722 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
4075 11855 9.005777 ACGCTCTTATATTACTTTAGAGAGAGG 57.994 37.037 0.00 0.00 36.61 3.69
4336 12136 3.244491 GCCTATGACTCCAGAATCTGCAT 60.244 47.826 4.40 5.62 0.00 3.96
4347 12147 3.130516 CAGAATCTGCATTGATGTGCCTT 59.869 43.478 0.00 0.00 44.43 4.35
4477 12288 8.551440 CATATTCCCATTGGATTGAGATACCTA 58.449 37.037 3.62 0.00 41.40 3.08
4478 12289 5.825593 TCCCATTGGATTGAGATACCTAC 57.174 43.478 3.62 0.00 35.03 3.18
4481 12292 5.545723 CCCATTGGATTGAGATACCTACTCT 59.454 44.000 3.62 0.00 35.66 3.24
4482 12293 6.295575 CCCATTGGATTGAGATACCTACTCTC 60.296 46.154 3.62 0.00 39.69 3.20
4507 12318 5.789643 TTTCCCATTATTAGGAAGCATGC 57.210 39.130 10.51 10.51 42.91 4.06
4653 12480 3.628487 AGGTAGCTGTCTATGACTTCGTC 59.372 47.826 0.00 0.00 33.15 4.20
4678 12505 2.116125 GGGCCTGTTCACCTTGCT 59.884 61.111 0.84 0.00 0.00 3.91
4864 12693 1.088340 CAGCTGGGAAGAGCATGTCG 61.088 60.000 5.57 0.00 41.83 4.35
4996 12825 4.497340 CGTTATTGCAGTTTGTGACCTGTT 60.497 41.667 0.00 0.00 0.00 3.16
5045 12874 1.341080 GGGGTTATTGCATCCATGGG 58.659 55.000 13.02 0.00 0.00 4.00
5074 12903 3.638592 ATTCCTTGGCCGGGGTTCG 62.639 63.158 13.64 0.00 38.88 3.95
5144 12973 5.128919 AGTTAAGCTCAAGATAATGCAGGG 58.871 41.667 0.00 0.00 0.00 4.45
5149 12978 0.106066 CAAGATAATGCAGGGGCCCA 60.106 55.000 27.72 3.88 40.13 5.36
5158 12987 4.066139 AGGGGCCCAAGTGATGCC 62.066 66.667 27.72 1.71 44.59 4.40
5189 13018 2.037620 CTAGCTTGATGGGCCTCGCT 62.038 60.000 4.53 7.89 0.00 4.93
5278 13107 5.728471 ACTTCACCATCTCACATACTCTTG 58.272 41.667 0.00 0.00 0.00 3.02
5290 13119 5.069119 TCACATACTCTTGCCAGTATCGAAT 59.931 40.000 0.00 0.00 37.47 3.34
5405 13234 2.641305 AGGAGCTGACTGATTTGATGC 58.359 47.619 0.00 0.00 0.00 3.91
5418 13247 6.000246 TGATTTGATGCAGTGGTATCCTTA 58.000 37.500 0.00 0.00 35.50 2.69
5462 13291 5.875224 TCTGTTGATGGTGGACATTTTAGA 58.125 37.500 0.00 0.00 40.72 2.10
5464 13293 6.430925 TCTGTTGATGGTGGACATTTTAGAAG 59.569 38.462 0.00 0.00 40.72 2.85
5465 13294 6.303054 TGTTGATGGTGGACATTTTAGAAGA 58.697 36.000 0.00 0.00 40.72 2.87
5466 13295 6.947733 TGTTGATGGTGGACATTTTAGAAGAT 59.052 34.615 0.00 0.00 40.72 2.40
5472 13301 9.784531 ATGGTGGACATTTTAGAAGATATACTG 57.215 33.333 0.00 0.00 35.97 2.74
5493 13322 5.581126 TGCCTAGCAGTCAATAATTTTGG 57.419 39.130 0.00 0.00 33.32 3.28
5494 13323 5.016173 TGCCTAGCAGTCAATAATTTTGGT 58.984 37.500 0.00 0.00 33.32 3.67
5495 13324 5.480073 TGCCTAGCAGTCAATAATTTTGGTT 59.520 36.000 0.00 0.00 33.32 3.67
5496 13325 6.661377 TGCCTAGCAGTCAATAATTTTGGTTA 59.339 34.615 0.00 0.00 33.32 2.85
5497 13326 7.177568 TGCCTAGCAGTCAATAATTTTGGTTAA 59.822 33.333 0.00 0.00 33.32 2.01
5498 13327 7.488150 GCCTAGCAGTCAATAATTTTGGTTAAC 59.512 37.037 0.00 0.00 0.00 2.01
5499 13328 8.519526 CCTAGCAGTCAATAATTTTGGTTAACA 58.480 33.333 8.10 0.00 0.00 2.41
5500 13329 9.341899 CTAGCAGTCAATAATTTTGGTTAACAC 57.658 33.333 8.10 0.00 0.00 3.32
5501 13330 7.151976 AGCAGTCAATAATTTTGGTTAACACC 58.848 34.615 8.10 0.00 44.56 4.16
5509 13338 4.296265 GGTTAACACCGCTCCCTG 57.704 61.111 8.10 0.00 31.60 4.45
5510 13339 1.376812 GGTTAACACCGCTCCCTGG 60.377 63.158 8.10 0.00 31.60 4.45
5511 13340 1.675219 GTTAACACCGCTCCCTGGA 59.325 57.895 0.00 0.00 0.00 3.86
5512 13341 0.391263 GTTAACACCGCTCCCTGGAG 60.391 60.000 8.91 8.91 44.56 3.86
5513 13342 0.834687 TTAACACCGCTCCCTGGAGT 60.835 55.000 14.45 0.00 43.70 3.85
5514 13343 0.834687 TAACACCGCTCCCTGGAGTT 60.835 55.000 14.45 4.35 43.70 3.01
5528 13357 0.310854 GGAGTTGGAACGTTGGCAAG 59.689 55.000 5.00 0.00 0.00 4.01
5539 13368 4.465632 ACGTTGGCAAGTAGATGATACA 57.534 40.909 0.00 0.00 0.00 2.29
5541 13370 4.811024 ACGTTGGCAAGTAGATGATACATG 59.189 41.667 0.00 0.00 0.00 3.21
5542 13371 5.049828 CGTTGGCAAGTAGATGATACATGA 58.950 41.667 0.00 0.00 0.00 3.07
5543 13372 5.698089 CGTTGGCAAGTAGATGATACATGAT 59.302 40.000 0.00 0.00 0.00 2.45
5544 13373 6.868339 CGTTGGCAAGTAGATGATACATGATA 59.132 38.462 0.00 0.00 0.00 2.15
5545 13374 7.148738 CGTTGGCAAGTAGATGATACATGATAC 60.149 40.741 0.00 0.00 0.00 2.24
5549 13378 6.252441 GCAAGTAGATGATACATGATACGCTC 59.748 42.308 0.00 0.00 0.00 5.03
5702 13532 7.177392 AGCATATGAAATGTATAAAAGAGGGGC 59.823 37.037 6.97 0.00 0.00 5.80
5718 13552 1.301716 GGCCGCAGTGAGAGACAAA 60.302 57.895 0.00 0.00 0.00 2.83
5781 13615 3.050275 GCGACCTGTTGTGCCTCC 61.050 66.667 0.00 0.00 0.00 4.30
5783 13617 1.961277 CGACCTGTTGTGCCTCCAC 60.961 63.158 0.00 0.00 42.40 4.02
5820 13654 3.083997 CTCCTCCACCCCCTTCCG 61.084 72.222 0.00 0.00 0.00 4.30
5829 13663 3.408853 CCCCTTCCGTTCCCCCTC 61.409 72.222 0.00 0.00 0.00 4.30
5832 13666 2.609610 CTTCCGTTCCCCCTCCCA 60.610 66.667 0.00 0.00 0.00 4.37
5900 13740 2.044946 CTGCTTTTCCCCTCCCGG 60.045 66.667 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.768253 AATCACTCTCCGATGTGCAA 57.232 45.000 0.00 0.00 34.49 4.08
407 414 0.991920 ACGGTGGGAATGAGTGGATT 59.008 50.000 0.00 0.00 0.00 3.01
419 426 0.906282 AGGTGTTAGGGTACGGTGGG 60.906 60.000 0.00 0.00 0.00 4.61
568 577 9.965824 GTCCATGAAAAAGTCTTCTTCAATTAA 57.034 29.630 5.46 0.00 33.08 1.40
569 578 9.354673 AGTCCATGAAAAAGTCTTCTTCAATTA 57.645 29.630 5.46 0.00 33.08 1.40
570 579 8.242729 AGTCCATGAAAAAGTCTTCTTCAATT 57.757 30.769 5.46 0.00 33.08 2.32
571 580 7.830099 AGTCCATGAAAAAGTCTTCTTCAAT 57.170 32.000 5.46 0.00 33.08 2.57
572 581 7.042051 CGTAGTCCATGAAAAAGTCTTCTTCAA 60.042 37.037 5.46 0.00 33.08 2.69
573 582 6.423905 CGTAGTCCATGAAAAAGTCTTCTTCA 59.576 38.462 3.84 3.84 33.82 3.02
574 583 6.645415 TCGTAGTCCATGAAAAAGTCTTCTTC 59.355 38.462 0.00 0.00 32.90 2.87
575 584 6.522054 TCGTAGTCCATGAAAAAGTCTTCTT 58.478 36.000 0.00 0.00 35.14 2.52
576 585 6.015350 TCTCGTAGTCCATGAAAAAGTCTTCT 60.015 38.462 0.00 0.00 0.00 2.85
577 586 6.089685 GTCTCGTAGTCCATGAAAAAGTCTTC 59.910 42.308 0.00 0.00 0.00 2.87
578 587 5.927115 GTCTCGTAGTCCATGAAAAAGTCTT 59.073 40.000 0.00 0.00 0.00 3.01
579 588 5.471257 GTCTCGTAGTCCATGAAAAAGTCT 58.529 41.667 0.00 0.00 0.00 3.24
580 589 4.323868 CGTCTCGTAGTCCATGAAAAAGTC 59.676 45.833 0.00 0.00 0.00 3.01
581 590 4.235360 CGTCTCGTAGTCCATGAAAAAGT 58.765 43.478 0.00 0.00 0.00 2.66
582 591 3.060895 GCGTCTCGTAGTCCATGAAAAAG 59.939 47.826 0.00 0.00 0.00 2.27
583 592 2.991190 GCGTCTCGTAGTCCATGAAAAA 59.009 45.455 0.00 0.00 0.00 1.94
584 593 2.230508 AGCGTCTCGTAGTCCATGAAAA 59.769 45.455 0.00 0.00 0.00 2.29
585 594 1.816835 AGCGTCTCGTAGTCCATGAAA 59.183 47.619 0.00 0.00 0.00 2.69
586 595 1.460504 AGCGTCTCGTAGTCCATGAA 58.539 50.000 0.00 0.00 0.00 2.57
587 596 1.460504 AAGCGTCTCGTAGTCCATGA 58.539 50.000 0.00 0.00 0.00 3.07
588 597 3.416119 TTAAGCGTCTCGTAGTCCATG 57.584 47.619 0.00 0.00 0.00 3.66
589 598 3.442977 ACTTTAAGCGTCTCGTAGTCCAT 59.557 43.478 0.00 0.00 0.00 3.41
590 599 2.816087 ACTTTAAGCGTCTCGTAGTCCA 59.184 45.455 0.00 0.00 0.00 4.02
591 600 3.120060 TCACTTTAAGCGTCTCGTAGTCC 60.120 47.826 0.00 0.00 0.00 3.85
592 601 3.845216 GTCACTTTAAGCGTCTCGTAGTC 59.155 47.826 0.00 0.00 0.00 2.59
593 602 3.251729 TGTCACTTTAAGCGTCTCGTAGT 59.748 43.478 0.00 0.00 0.00 2.73
594 603 3.818387 TGTCACTTTAAGCGTCTCGTAG 58.182 45.455 0.00 0.00 0.00 3.51
595 604 3.902261 TGTCACTTTAAGCGTCTCGTA 57.098 42.857 0.00 0.00 0.00 3.43
596 605 2.787601 TGTCACTTTAAGCGTCTCGT 57.212 45.000 0.00 0.00 0.00 4.18
597 606 2.276540 CGATGTCACTTTAAGCGTCTCG 59.723 50.000 0.00 0.00 0.00 4.04
598 607 3.243336 ACGATGTCACTTTAAGCGTCTC 58.757 45.455 0.00 0.00 0.00 3.36
599 608 3.243336 GACGATGTCACTTTAAGCGTCT 58.757 45.455 11.31 0.00 42.15 4.18
600 609 2.984471 TGACGATGTCACTTTAAGCGTC 59.016 45.455 11.56 11.56 44.67 5.19
601 610 3.021269 TGACGATGTCACTTTAAGCGT 57.979 42.857 0.00 0.00 37.67 5.07
602 611 4.327357 AGATTGACGATGTCACTTTAAGCG 59.673 41.667 0.00 0.00 42.60 4.68
603 612 5.786401 AGATTGACGATGTCACTTTAAGC 57.214 39.130 0.00 0.00 42.60 3.09
607 616 8.783093 TCATTTTAAGATTGACGATGTCACTTT 58.217 29.630 0.00 0.00 42.60 2.66
608 617 8.322906 TCATTTTAAGATTGACGATGTCACTT 57.677 30.769 0.00 3.96 42.60 3.16
609 618 7.905604 TCATTTTAAGATTGACGATGTCACT 57.094 32.000 0.00 0.00 42.60 3.41
610 619 9.638300 GTATCATTTTAAGATTGACGATGTCAC 57.362 33.333 0.00 0.00 42.60 3.67
611 620 8.539674 CGTATCATTTTAAGATTGACGATGTCA 58.460 33.333 0.00 0.00 41.09 3.58
612 621 7.527516 GCGTATCATTTTAAGATTGACGATGTC 59.472 37.037 0.00 0.00 32.17 3.06
613 622 7.345192 GCGTATCATTTTAAGATTGACGATGT 58.655 34.615 0.00 0.00 32.17 3.06
614 623 6.792250 GGCGTATCATTTTAAGATTGACGATG 59.208 38.462 0.00 0.00 32.17 3.84
615 624 6.481976 TGGCGTATCATTTTAAGATTGACGAT 59.518 34.615 0.00 0.00 32.17 3.73
616 625 5.813157 TGGCGTATCATTTTAAGATTGACGA 59.187 36.000 0.00 0.00 32.17 4.20
617 626 6.019075 TCTGGCGTATCATTTTAAGATTGACG 60.019 38.462 0.00 0.00 33.10 4.35
618 627 7.246674 TCTGGCGTATCATTTTAAGATTGAC 57.753 36.000 0.00 0.00 0.00 3.18
619 628 8.988934 GTATCTGGCGTATCATTTTAAGATTGA 58.011 33.333 0.00 0.00 0.00 2.57
620 629 8.993121 AGTATCTGGCGTATCATTTTAAGATTG 58.007 33.333 0.00 0.00 0.00 2.67
621 630 9.209175 GAGTATCTGGCGTATCATTTTAAGATT 57.791 33.333 0.00 0.00 0.00 2.40
622 631 7.542477 CGAGTATCTGGCGTATCATTTTAAGAT 59.458 37.037 0.00 0.00 0.00 2.40
623 632 6.861572 CGAGTATCTGGCGTATCATTTTAAGA 59.138 38.462 0.00 0.00 0.00 2.10
624 633 6.641314 ACGAGTATCTGGCGTATCATTTTAAG 59.359 38.462 0.00 0.00 36.37 1.85
625 634 6.509656 ACGAGTATCTGGCGTATCATTTTAA 58.490 36.000 0.00 0.00 36.37 1.52
626 635 6.080648 ACGAGTATCTGGCGTATCATTTTA 57.919 37.500 0.00 0.00 36.37 1.52
627 636 4.945246 ACGAGTATCTGGCGTATCATTTT 58.055 39.130 0.00 0.00 36.37 1.82
628 637 4.585955 ACGAGTATCTGGCGTATCATTT 57.414 40.909 0.00 0.00 36.37 2.32
629 638 5.001874 TCTACGAGTATCTGGCGTATCATT 58.998 41.667 0.00 0.00 39.42 2.57
630 639 4.576879 TCTACGAGTATCTGGCGTATCAT 58.423 43.478 0.00 0.00 39.42 2.45
631 640 3.999046 TCTACGAGTATCTGGCGTATCA 58.001 45.455 0.00 0.00 39.42 2.15
632 641 5.354054 TTTCTACGAGTATCTGGCGTATC 57.646 43.478 0.00 0.00 39.42 2.24
633 642 5.961396 ATTTCTACGAGTATCTGGCGTAT 57.039 39.130 0.00 0.00 39.42 3.06
634 643 6.226052 TCTATTTCTACGAGTATCTGGCGTA 58.774 40.000 0.00 0.00 39.24 4.42
635 644 5.061853 TCTATTTCTACGAGTATCTGGCGT 58.938 41.667 0.00 0.00 41.58 5.68
636 645 5.179742 ACTCTATTTCTACGAGTATCTGGCG 59.820 44.000 0.00 0.00 36.33 5.69
637 646 6.016943 ACACTCTATTTCTACGAGTATCTGGC 60.017 42.308 0.00 0.00 36.33 4.85
638 647 7.499321 ACACTCTATTTCTACGAGTATCTGG 57.501 40.000 0.00 0.00 36.33 3.86
639 648 9.263538 AGTACACTCTATTTCTACGAGTATCTG 57.736 37.037 0.00 0.00 36.33 2.90
648 657 6.686253 GCACACGTAGTACACTCTATTTCTAC 59.314 42.308 0.38 0.00 41.61 2.59
649 658 6.372381 TGCACACGTAGTACACTCTATTTCTA 59.628 38.462 0.38 0.00 41.61 2.10
650 659 5.182570 TGCACACGTAGTACACTCTATTTCT 59.817 40.000 0.38 0.00 41.61 2.52
651 660 5.396484 TGCACACGTAGTACACTCTATTTC 58.604 41.667 0.38 0.00 41.61 2.17
652 661 5.381174 TGCACACGTAGTACACTCTATTT 57.619 39.130 0.38 0.00 41.61 1.40
653 662 5.340803 CATGCACACGTAGTACACTCTATT 58.659 41.667 0.38 0.00 41.61 1.73
654 663 4.733815 GCATGCACACGTAGTACACTCTAT 60.734 45.833 14.21 0.00 41.61 1.98
655 664 3.427098 GCATGCACACGTAGTACACTCTA 60.427 47.826 14.21 0.00 41.61 2.43
656 665 2.671351 GCATGCACACGTAGTACACTCT 60.671 50.000 14.21 0.00 41.61 3.24
657 666 1.654105 GCATGCACACGTAGTACACTC 59.346 52.381 14.21 0.00 41.61 3.51
658 667 1.710013 GCATGCACACGTAGTACACT 58.290 50.000 14.21 0.00 41.61 3.55
659 668 0.365523 CGCATGCACACGTAGTACAC 59.634 55.000 19.57 0.00 41.61 2.90
660 669 0.038983 ACGCATGCACACGTAGTACA 60.039 50.000 19.57 0.00 41.61 2.90
661 670 0.638746 GACGCATGCACACGTAGTAC 59.361 55.000 19.57 0.62 41.61 2.73
662 671 0.457166 GGACGCATGCACACGTAGTA 60.457 55.000 19.57 0.00 41.61 1.82
664 673 1.083806 ATGGACGCATGCACACGTAG 61.084 55.000 19.57 1.32 43.71 3.51
665 674 0.173708 TATGGACGCATGCACACGTA 59.826 50.000 19.57 9.20 43.71 3.57
666 675 0.461870 ATATGGACGCATGCACACGT 60.462 50.000 19.57 15.01 46.91 4.49
667 676 1.456923 CTATATGGACGCATGCACACG 59.543 52.381 19.57 8.54 0.00 4.49
668 677 1.800586 CCTATATGGACGCATGCACAC 59.199 52.381 19.57 7.03 38.35 3.82
669 678 1.416030 ACCTATATGGACGCATGCACA 59.584 47.619 19.57 13.61 39.71 4.57
670 679 1.800586 CACCTATATGGACGCATGCAC 59.199 52.381 19.57 10.85 39.71 4.57
671 680 1.270785 CCACCTATATGGACGCATGCA 60.271 52.381 19.57 0.00 43.02 3.96
672 681 1.442769 CCACCTATATGGACGCATGC 58.557 55.000 7.91 7.91 43.02 4.06
673 682 1.347707 ACCCACCTATATGGACGCATG 59.652 52.381 0.00 0.00 43.02 4.06
674 683 1.347707 CACCCACCTATATGGACGCAT 59.652 52.381 0.00 0.00 43.02 4.73
675 684 0.756294 CACCCACCTATATGGACGCA 59.244 55.000 0.00 0.00 43.02 5.24
676 685 0.034896 CCACCCACCTATATGGACGC 59.965 60.000 0.00 0.00 43.02 5.19
677 686 0.685097 CCCACCCACCTATATGGACG 59.315 60.000 0.00 0.00 43.02 4.79
678 687 1.420138 CACCCACCCACCTATATGGAC 59.580 57.143 0.00 0.00 43.02 4.02
679 688 1.010294 ACACCCACCCACCTATATGGA 59.990 52.381 0.00 0.00 43.02 3.41
680 689 1.518367 ACACCCACCCACCTATATGG 58.482 55.000 0.00 0.00 42.93 2.74
681 690 4.993705 AATACACCCACCCACCTATATG 57.006 45.455 0.00 0.00 0.00 1.78
682 691 5.012354 CGTTAATACACCCACCCACCTATAT 59.988 44.000 0.00 0.00 0.00 0.86
683 692 4.344679 CGTTAATACACCCACCCACCTATA 59.655 45.833 0.00 0.00 0.00 1.31
684 693 3.135167 CGTTAATACACCCACCCACCTAT 59.865 47.826 0.00 0.00 0.00 2.57
685 694 2.500910 CGTTAATACACCCACCCACCTA 59.499 50.000 0.00 0.00 0.00 3.08
686 695 1.279846 CGTTAATACACCCACCCACCT 59.720 52.381 0.00 0.00 0.00 4.00
687 696 1.278699 TCGTTAATACACCCACCCACC 59.721 52.381 0.00 0.00 0.00 4.61
688 697 2.743664 GTTCGTTAATACACCCACCCAC 59.256 50.000 0.00 0.00 0.00 4.61
689 698 2.612471 CGTTCGTTAATACACCCACCCA 60.612 50.000 0.00 0.00 0.00 4.51
690 699 2.001872 CGTTCGTTAATACACCCACCC 58.998 52.381 0.00 0.00 0.00 4.61
691 700 2.687370 ACGTTCGTTAATACACCCACC 58.313 47.619 0.00 0.00 0.00 4.61
692 701 4.448732 AGAAACGTTCGTTAATACACCCAC 59.551 41.667 10.89 0.00 34.02 4.61
693 702 4.448395 CAGAAACGTTCGTTAATACACCCA 59.552 41.667 10.89 0.00 34.02 4.51
694 703 4.448732 ACAGAAACGTTCGTTAATACACCC 59.551 41.667 10.89 0.00 34.02 4.61
695 704 5.403466 AGACAGAAACGTTCGTTAATACACC 59.597 40.000 10.89 0.00 34.02 4.16
696 705 6.286941 CAGACAGAAACGTTCGTTAATACAC 58.713 40.000 10.89 2.99 34.02 2.90
697 706 5.403166 CCAGACAGAAACGTTCGTTAATACA 59.597 40.000 10.89 0.00 34.02 2.29
698 707 5.403466 ACCAGACAGAAACGTTCGTTAATAC 59.597 40.000 10.89 4.31 34.02 1.89
699 708 5.403166 CACCAGACAGAAACGTTCGTTAATA 59.597 40.000 10.89 0.00 34.02 0.98
700 709 4.210537 CACCAGACAGAAACGTTCGTTAAT 59.789 41.667 10.89 0.70 34.02 1.40
701 710 3.552699 CACCAGACAGAAACGTTCGTTAA 59.447 43.478 10.89 0.00 34.02 2.01
702 711 3.117794 CACCAGACAGAAACGTTCGTTA 58.882 45.455 10.89 0.00 34.02 3.18
703 712 1.931172 CACCAGACAGAAACGTTCGTT 59.069 47.619 0.00 4.72 34.02 3.85
704 713 1.134907 ACACCAGACAGAAACGTTCGT 60.135 47.619 0.00 0.00 34.02 3.85
705 714 1.521423 GACACCAGACAGAAACGTTCG 59.479 52.381 0.00 0.00 34.02 3.95
706 715 2.546778 TGACACCAGACAGAAACGTTC 58.453 47.619 0.00 0.00 0.00 3.95
707 716 2.684001 TGACACCAGACAGAAACGTT 57.316 45.000 0.00 0.00 0.00 3.99
708 717 2.684001 TTGACACCAGACAGAAACGT 57.316 45.000 0.00 0.00 0.00 3.99
709 718 4.094294 TCTTTTTGACACCAGACAGAAACG 59.906 41.667 0.00 0.00 0.00 3.60
710 719 5.332707 GTCTTTTTGACACCAGACAGAAAC 58.667 41.667 3.86 0.00 44.73 2.78
711 720 4.094294 CGTCTTTTTGACACCAGACAGAAA 59.906 41.667 8.05 0.00 45.60 2.52
712 721 3.621268 CGTCTTTTTGACACCAGACAGAA 59.379 43.478 8.05 0.00 45.60 3.02
713 722 3.194861 CGTCTTTTTGACACCAGACAGA 58.805 45.455 8.05 0.00 45.60 3.41
714 723 2.936498 ACGTCTTTTTGACACCAGACAG 59.064 45.455 8.05 4.54 45.60 3.51
715 724 2.675844 CACGTCTTTTTGACACCAGACA 59.324 45.455 8.05 0.00 45.60 3.41
716 725 2.538939 GCACGTCTTTTTGACACCAGAC 60.539 50.000 0.00 0.00 45.60 3.51
717 726 1.668751 GCACGTCTTTTTGACACCAGA 59.331 47.619 0.00 0.00 45.60 3.86
718 727 1.594518 CGCACGTCTTTTTGACACCAG 60.595 52.381 0.00 0.00 45.60 4.00
719 728 0.375454 CGCACGTCTTTTTGACACCA 59.625 50.000 0.00 0.00 45.60 4.17
720 729 0.653636 TCGCACGTCTTTTTGACACC 59.346 50.000 0.00 0.00 45.60 4.16
721 730 1.326548 ACTCGCACGTCTTTTTGACAC 59.673 47.619 0.00 0.00 45.60 3.67
722 731 1.591158 GACTCGCACGTCTTTTTGACA 59.409 47.619 0.00 0.00 45.60 3.58
723 732 1.591158 TGACTCGCACGTCTTTTTGAC 59.409 47.619 4.30 0.00 42.06 3.18
724 733 1.591158 GTGACTCGCACGTCTTTTTGA 59.409 47.619 4.30 0.00 37.83 2.69
725 734 2.005188 GTGACTCGCACGTCTTTTTG 57.995 50.000 4.30 0.00 37.83 2.44
734 743 3.157523 CGTCGTCGTGACTCGCAC 61.158 66.667 8.49 0.00 45.87 5.34
735 744 4.379143 CCGTCGTCGTGACTCGCA 62.379 66.667 0.71 0.00 45.87 5.10
738 747 3.948086 CTGCCCGTCGTCGTGACTC 62.948 68.421 0.71 0.00 45.87 3.36
739 748 4.039357 CTGCCCGTCGTCGTGACT 62.039 66.667 0.71 0.00 45.87 3.41
753 762 3.672295 CTTCCACCTCCCTCGCTGC 62.672 68.421 0.00 0.00 0.00 5.25
754 763 2.581354 CTTCCACCTCCCTCGCTG 59.419 66.667 0.00 0.00 0.00 5.18
755 764 2.685380 CCTTCCACCTCCCTCGCT 60.685 66.667 0.00 0.00 0.00 4.93
756 765 3.003763 ACCTTCCACCTCCCTCGC 61.004 66.667 0.00 0.00 0.00 5.03
757 766 2.660064 CCACCTTCCACCTCCCTCG 61.660 68.421 0.00 0.00 0.00 4.63
758 767 1.539124 ACCACCTTCCACCTCCCTC 60.539 63.158 0.00 0.00 0.00 4.30
759 768 1.847968 CACCACCTTCCACCTCCCT 60.848 63.158 0.00 0.00 0.00 4.20
760 769 1.846124 TCACCACCTTCCACCTCCC 60.846 63.158 0.00 0.00 0.00 4.30
761 770 1.375326 GTCACCACCTTCCACCTCC 59.625 63.158 0.00 0.00 0.00 4.30
762 771 1.004918 CGTCACCACCTTCCACCTC 60.005 63.158 0.00 0.00 0.00 3.85
763 772 1.755393 GACGTCACCACCTTCCACCT 61.755 60.000 11.55 0.00 0.00 4.00
764 773 1.301479 GACGTCACCACCTTCCACC 60.301 63.158 11.55 0.00 0.00 4.61
765 774 0.319641 GAGACGTCACCACCTTCCAC 60.320 60.000 19.50 0.00 0.00 4.02
766 775 0.757561 TGAGACGTCACCACCTTCCA 60.758 55.000 19.50 0.00 0.00 3.53
767 776 0.319641 GTGAGACGTCACCACCTTCC 60.320 60.000 22.64 5.26 46.58 3.46
768 777 3.196613 GTGAGACGTCACCACCTTC 57.803 57.895 22.64 9.98 46.58 3.46
781 790 3.733960 CTGCCCGTCGTCGTGAGA 61.734 66.667 0.71 0.00 38.16 3.27
795 804 3.672295 CTTCCACCTCCCTCGCTGC 62.672 68.421 0.00 0.00 0.00 5.25
796 805 2.581354 CTTCCACCTCCCTCGCTG 59.419 66.667 0.00 0.00 0.00 5.18
803 812 1.375326 GTCACCACCTTCCACCTCC 59.625 63.158 0.00 0.00 0.00 4.30
804 813 1.004918 CGTCACCACCTTCCACCTC 60.005 63.158 0.00 0.00 0.00 3.85
806 815 1.301479 GACGTCACCACCTTCCACC 60.301 63.158 11.55 0.00 0.00 4.61
808 817 1.331399 TGTGACGTCACCACCTTCCA 61.331 55.000 38.12 19.53 45.88 3.53
809 818 0.878961 GTGTGACGTCACCACCTTCC 60.879 60.000 38.12 17.25 45.88 3.46
811 820 1.227147 CGTGTGACGTCACCACCTT 60.227 57.895 38.12 0.00 45.88 3.50
812 821 2.415843 CGTGTGACGTCACCACCT 59.584 61.111 38.12 0.00 45.88 4.00
825 835 4.617520 TGCATGCCGTCCACGTGT 62.618 61.111 16.68 0.00 37.74 4.49
843 853 1.471684 ACTAGTAACAGCCGACGGAAG 59.528 52.381 20.50 11.43 0.00 3.46
867 877 4.449376 CCTGTGGGGATATACACTCCTACT 60.449 50.000 0.00 0.00 38.39 2.57
868 878 3.833070 CCTGTGGGGATATACACTCCTAC 59.167 52.174 0.00 0.00 38.39 3.18
869 879 3.757461 GCCTGTGGGGATATACACTCCTA 60.757 52.174 0.00 0.00 38.39 2.94
870 880 2.977808 CCTGTGGGGATATACACTCCT 58.022 52.381 0.00 0.00 38.39 3.69
927 938 0.198696 AGGGGGAGGAAGAAAAGGGA 59.801 55.000 0.00 0.00 0.00 4.20
943 954 3.771160 AGGAGTTGCGGCGTAGGG 61.771 66.667 9.37 0.00 0.00 3.53
994 1005 1.658686 GCTCCCGTCGACATCAGTCT 61.659 60.000 17.16 0.00 42.73 3.24
1085 1114 2.443016 CCTCTACCCGCAGCTCCT 60.443 66.667 0.00 0.00 0.00 3.69
1206 1245 5.123344 AGACTATAAAAATGTCAACGGCACC 59.877 40.000 0.00 0.00 33.56 5.01
1249 1340 2.853235 AACACCCGGAGAAAAGGTAG 57.147 50.000 0.73 0.00 30.98 3.18
1338 1729 7.605691 CACAACCCTTCATGGCAAATTATTTAA 59.394 33.333 0.00 0.00 0.00 1.52
1339 1730 7.038729 TCACAACCCTTCATGGCAAATTATTTA 60.039 33.333 0.00 0.00 0.00 1.40
1342 1734 4.776837 TCACAACCCTTCATGGCAAATTAT 59.223 37.500 0.00 0.00 0.00 1.28
1350 1742 4.081406 TGAAGAATCACAACCCTTCATGG 58.919 43.478 0.00 0.00 39.76 3.66
1353 1745 5.415701 GCTAATGAAGAATCACAACCCTTCA 59.584 40.000 0.00 0.00 45.87 3.02
1355 1747 5.574188 AGCTAATGAAGAATCACAACCCTT 58.426 37.500 0.00 0.00 38.69 3.95
1362 1754 7.014808 AGGGAGTACTAGCTAATGAAGAATCAC 59.985 40.741 0.00 0.00 38.69 3.06
1383 1775 8.017418 AGACTTATATTGAGAAACAGAGGGAG 57.983 38.462 0.00 0.00 0.00 4.30
1384 1776 7.979786 AGACTTATATTGAGAAACAGAGGGA 57.020 36.000 0.00 0.00 0.00 4.20
1385 1777 9.454859 AAAAGACTTATATTGAGAAACAGAGGG 57.545 33.333 0.00 0.00 0.00 4.30
1440 1832 9.507329 AGTGTAGATTCACTCATTTTGTTATGT 57.493 29.630 0.00 0.00 44.07 2.29
1473 1865 9.875691 AACTACGTACGGATGTATATAGATGTA 57.124 33.333 21.06 0.00 32.11 2.29
1474 1866 8.663025 CAACTACGTACGGATGTATATAGATGT 58.337 37.037 21.06 0.00 32.11 3.06
1475 1867 8.876790 TCAACTACGTACGGATGTATATAGATG 58.123 37.037 21.06 13.27 31.76 2.90
1476 1868 9.610705 ATCAACTACGTACGGATGTATATAGAT 57.389 33.333 21.06 6.55 32.11 1.98
1480 1872 9.999009 CAATATCAACTACGTACGGATGTATAT 57.001 33.333 21.06 11.74 32.11 0.86
1481 1873 9.218440 TCAATATCAACTACGTACGGATGTATA 57.782 33.333 21.06 10.04 32.11 1.47
1482 1874 8.102800 TCAATATCAACTACGTACGGATGTAT 57.897 34.615 21.06 8.18 32.11 2.29
1483 1875 7.495135 TCAATATCAACTACGTACGGATGTA 57.505 36.000 21.06 0.00 0.00 2.29
1484 1876 6.381481 TCAATATCAACTACGTACGGATGT 57.619 37.500 21.06 11.85 0.00 3.06
1485 1877 7.688478 TTTCAATATCAACTACGTACGGATG 57.312 36.000 21.06 7.54 0.00 3.51
1486 1878 8.358148 AGATTTCAATATCAACTACGTACGGAT 58.642 33.333 21.06 13.90 0.00 4.18
1487 1879 7.709947 AGATTTCAATATCAACTACGTACGGA 58.290 34.615 21.06 10.81 0.00 4.69
1488 1880 7.646526 TGAGATTTCAATATCAACTACGTACGG 59.353 37.037 21.06 5.00 34.05 4.02
1489 1881 8.556517 TGAGATTTCAATATCAACTACGTACG 57.443 34.615 15.01 15.01 34.05 3.67
1507 1899 9.914131 GCCTAAATACAAGTCTTTTTGAGATTT 57.086 29.630 0.00 2.08 36.61 2.17
1508 1900 9.077885 TGCCTAAATACAAGTCTTTTTGAGATT 57.922 29.630 0.00 0.00 36.61 2.40
1509 1901 8.635765 TGCCTAAATACAAGTCTTTTTGAGAT 57.364 30.769 0.00 0.00 36.61 2.75
1510 1902 8.514594 CATGCCTAAATACAAGTCTTTTTGAGA 58.485 33.333 0.00 0.00 0.00 3.27
1511 1903 7.756722 CCATGCCTAAATACAAGTCTTTTTGAG 59.243 37.037 0.00 0.00 0.00 3.02
1512 1904 7.450014 TCCATGCCTAAATACAAGTCTTTTTGA 59.550 33.333 0.00 0.00 0.00 2.69
1513 1905 7.601856 TCCATGCCTAAATACAAGTCTTTTTG 58.398 34.615 0.00 0.00 0.00 2.44
1514 1906 7.093771 CCTCCATGCCTAAATACAAGTCTTTTT 60.094 37.037 0.00 0.00 0.00 1.94
1515 1907 6.378280 CCTCCATGCCTAAATACAAGTCTTTT 59.622 38.462 0.00 0.00 0.00 2.27
1516 1908 5.888161 CCTCCATGCCTAAATACAAGTCTTT 59.112 40.000 0.00 0.00 0.00 2.52
1517 1909 5.440610 CCTCCATGCCTAAATACAAGTCTT 58.559 41.667 0.00 0.00 0.00 3.01
1518 1910 4.141390 CCCTCCATGCCTAAATACAAGTCT 60.141 45.833 0.00 0.00 0.00 3.24
1519 1911 4.137543 CCCTCCATGCCTAAATACAAGTC 58.862 47.826 0.00 0.00 0.00 3.01
1520 1912 3.785887 TCCCTCCATGCCTAAATACAAGT 59.214 43.478 0.00 0.00 0.00 3.16
1521 1913 4.141390 ACTCCCTCCATGCCTAAATACAAG 60.141 45.833 0.00 0.00 0.00 3.16
1522 1914 3.785887 ACTCCCTCCATGCCTAAATACAA 59.214 43.478 0.00 0.00 0.00 2.41
1523 1915 3.393687 ACTCCCTCCATGCCTAAATACA 58.606 45.455 0.00 0.00 0.00 2.29
1524 1916 5.562298 TTACTCCCTCCATGCCTAAATAC 57.438 43.478 0.00 0.00 0.00 1.89
1525 1917 7.881912 TTATTACTCCCTCCATGCCTAAATA 57.118 36.000 0.00 0.00 0.00 1.40
1526 1918 6.780198 TTATTACTCCCTCCATGCCTAAAT 57.220 37.500 0.00 0.00 0.00 1.40
1527 1919 6.584471 TTTATTACTCCCTCCATGCCTAAA 57.416 37.500 0.00 0.00 0.00 1.85
1528 1920 6.780198 ATTTATTACTCCCTCCATGCCTAA 57.220 37.500 0.00 0.00 0.00 2.69
1529 1921 6.780198 AATTTATTACTCCCTCCATGCCTA 57.220 37.500 0.00 0.00 0.00 3.93
1530 1922 5.669798 AATTTATTACTCCCTCCATGCCT 57.330 39.130 0.00 0.00 0.00 4.75
1531 1923 5.598417 ACAAATTTATTACTCCCTCCATGCC 59.402 40.000 0.00 0.00 0.00 4.40
1532 1924 6.547510 AGACAAATTTATTACTCCCTCCATGC 59.452 38.462 0.00 0.00 0.00 4.06
1533 1925 7.557719 ACAGACAAATTTATTACTCCCTCCATG 59.442 37.037 0.00 0.00 0.00 3.66
1534 1926 7.643123 ACAGACAAATTTATTACTCCCTCCAT 58.357 34.615 0.00 0.00 0.00 3.41
1535 1927 7.027874 ACAGACAAATTTATTACTCCCTCCA 57.972 36.000 0.00 0.00 0.00 3.86
1536 1928 8.265764 AGTACAGACAAATTTATTACTCCCTCC 58.734 37.037 0.00 0.00 0.00 4.30
1537 1929 9.668497 AAGTACAGACAAATTTATTACTCCCTC 57.332 33.333 0.00 0.00 0.00 4.30
1538 1930 9.449719 CAAGTACAGACAAATTTATTACTCCCT 57.550 33.333 0.00 0.00 0.00 4.20
1539 1931 8.182227 GCAAGTACAGACAAATTTATTACTCCC 58.818 37.037 0.00 0.00 0.00 4.30
1540 1932 8.947115 AGCAAGTACAGACAAATTTATTACTCC 58.053 33.333 0.00 0.00 0.00 3.85
1694 2149 3.192230 CAAATCTACCGCGCCGCA 61.192 61.111 10.75 0.00 0.00 5.69
1729 2184 1.200519 AGCACGGGACTTTATAGGCA 58.799 50.000 0.00 0.00 0.00 4.75
2012 2493 2.236395 AGACGTCCCGGAAATTCATCTT 59.764 45.455 13.01 0.00 0.00 2.40
2113 2594 2.750637 ACGAGGAGACGGCGATGT 60.751 61.111 16.62 0.00 36.92 3.06
2116 2597 3.429141 GTGACGAGGAGACGGCGA 61.429 66.667 16.62 0.00 45.00 5.54
2132 2613 4.405671 TCGCTCGTCCTCCTCGGT 62.406 66.667 0.00 0.00 0.00 4.69
2249 2730 1.664649 CTGCCTTTCGCTGACGTCA 60.665 57.895 18.88 18.88 41.18 4.35
2251 2732 1.956170 CACTGCCTTTCGCTGACGT 60.956 57.895 0.00 0.00 41.18 4.34
2369 2850 1.143305 CCATCATCATTCTCGTCGGC 58.857 55.000 0.00 0.00 0.00 5.54
2404 2891 7.482113 CGGCATACATAGATAGAAAACTACTCG 59.518 40.741 0.00 0.00 0.00 4.18
2498 3006 4.217767 TGCAACTACTACGGCATAGATAGG 59.782 45.833 0.00 0.00 34.65 2.57
2797 3321 7.237471 TCCATTCATCAGATATGCCTAAACCTA 59.763 37.037 0.00 0.00 0.00 3.08
2799 3323 6.240894 TCCATTCATCAGATATGCCTAAACC 58.759 40.000 0.00 0.00 0.00 3.27
2800 3324 7.934855 ATCCATTCATCAGATATGCCTAAAC 57.065 36.000 0.00 0.00 0.00 2.01
2839 3374 2.939460 AGTTTGTTGCTTGCTTCGTT 57.061 40.000 0.00 0.00 0.00 3.85
2849 3384 9.529325 AAAGAACCTTTTCTATAAGTTTGTTGC 57.471 29.630 0.00 0.00 41.56 4.17
2892 3825 5.335035 GGAGGATGACGTTAGTGCTAGATAC 60.335 48.000 0.00 0.00 0.00 2.24
2893 3826 4.760715 GGAGGATGACGTTAGTGCTAGATA 59.239 45.833 0.00 0.00 0.00 1.98
2895 3828 2.950309 GGAGGATGACGTTAGTGCTAGA 59.050 50.000 0.00 0.00 0.00 2.43
2896 3829 2.952978 AGGAGGATGACGTTAGTGCTAG 59.047 50.000 0.00 0.00 0.00 3.42
2897 3830 3.014304 AGGAGGATGACGTTAGTGCTA 57.986 47.619 0.00 0.00 0.00 3.49
2899 3832 2.674796 AAGGAGGATGACGTTAGTGC 57.325 50.000 0.00 0.00 0.00 4.40
2900 3833 4.822026 AGAAAAGGAGGATGACGTTAGTG 58.178 43.478 0.00 0.00 0.00 2.74
2902 3835 7.900782 TTTAAGAAAAGGAGGATGACGTTAG 57.099 36.000 0.00 0.00 0.00 2.34
2903 3836 8.680039 TTTTTAAGAAAAGGAGGATGACGTTA 57.320 30.769 0.00 0.00 31.41 3.18
2904 3837 7.576861 TTTTTAAGAAAAGGAGGATGACGTT 57.423 32.000 0.00 0.00 31.41 3.99
2950 4047 0.247736 CTTCCTCCGTCAAGTCCTGG 59.752 60.000 0.00 0.00 0.00 4.45
2957 4054 3.162666 AGTCACATACTTCCTCCGTCAA 58.837 45.455 0.00 0.00 33.35 3.18
2958 4055 2.803956 AGTCACATACTTCCTCCGTCA 58.196 47.619 0.00 0.00 33.35 4.35
2992 4089 2.038033 AGTAAACCTACAGGCAAAGCGA 59.962 45.455 0.00 0.00 39.32 4.93
2993 4090 2.423577 AGTAAACCTACAGGCAAAGCG 58.576 47.619 0.00 0.00 39.32 4.68
2994 4091 3.568430 ACAAGTAAACCTACAGGCAAAGC 59.432 43.478 0.00 0.00 39.32 3.51
2995 4092 5.531287 AGAACAAGTAAACCTACAGGCAAAG 59.469 40.000 0.00 0.00 39.32 2.77
2998 4095 4.141574 ACAGAACAAGTAAACCTACAGGCA 60.142 41.667 0.00 0.00 39.32 4.75
2999 4096 4.386711 ACAGAACAAGTAAACCTACAGGC 58.613 43.478 0.00 0.00 39.32 4.85
3001 4098 5.820947 ACCAACAGAACAAGTAAACCTACAG 59.179 40.000 0.00 0.00 0.00 2.74
3018 4127 1.658095 CACGCCAAAAACAACCAACAG 59.342 47.619 0.00 0.00 0.00 3.16
3020 4129 1.391826 CACACGCCAAAAACAACCAAC 59.608 47.619 0.00 0.00 0.00 3.77
3045 4155 5.935789 CCCAGTCTCCTACAAATTACGAAAA 59.064 40.000 0.00 0.00 0.00 2.29
3049 4159 4.441634 CCTCCCAGTCTCCTACAAATTACG 60.442 50.000 0.00 0.00 0.00 3.18
3053 4163 2.840651 CACCTCCCAGTCTCCTACAAAT 59.159 50.000 0.00 0.00 0.00 2.32
3055 4165 1.431633 TCACCTCCCAGTCTCCTACAA 59.568 52.381 0.00 0.00 0.00 2.41
3056 4166 1.081481 TCACCTCCCAGTCTCCTACA 58.919 55.000 0.00 0.00 0.00 2.74
3057 4167 1.476477 GTCACCTCCCAGTCTCCTAC 58.524 60.000 0.00 0.00 0.00 3.18
3059 4169 1.079438 GGTCACCTCCCAGTCTCCT 59.921 63.158 0.00 0.00 0.00 3.69
3060 4170 0.618968 ATGGTCACCTCCCAGTCTCC 60.619 60.000 0.00 0.00 34.92 3.71
3061 4171 0.539051 CATGGTCACCTCCCAGTCTC 59.461 60.000 0.00 0.00 34.92 3.36
3062 4172 0.911525 CCATGGTCACCTCCCAGTCT 60.912 60.000 2.57 0.00 34.92 3.24
3063 4173 1.201429 ACCATGGTCACCTCCCAGTC 61.201 60.000 13.00 0.00 34.92 3.51
3065 4175 1.300963 CACCATGGTCACCTCCCAG 59.699 63.158 16.53 0.00 34.92 4.45
3067 4177 1.002134 CACACCATGGTCACCTCCC 60.002 63.158 16.53 0.00 0.00 4.30
3070 4184 1.556911 GATCTCACACCATGGTCACCT 59.443 52.381 16.53 0.00 0.00 4.00
3075 4189 2.577563 TCAATGGATCTCACACCATGGT 59.422 45.455 13.00 13.00 44.79 3.55
3095 4209 7.374491 GCTCTTCAACAATTTATATGCGTCTTC 59.626 37.037 0.00 0.00 0.00 2.87
3097 4211 6.238484 GGCTCTTCAACAATTTATATGCGTCT 60.238 38.462 0.00 0.00 0.00 4.18
3100 4214 5.215160 GGGCTCTTCAACAATTTATATGCG 58.785 41.667 0.00 0.00 0.00 4.73
3101 4215 6.147864 TGGGCTCTTCAACAATTTATATGC 57.852 37.500 0.00 0.00 0.00 3.14
3164 4278 8.603242 ACGCTAAATAGAACTTTCTGAAGAAA 57.397 30.769 5.43 5.43 41.29 2.52
3197 4314 4.261197 CGGTTCCTTTCTCTTCAACCTTTG 60.261 45.833 0.00 0.00 35.32 2.77
3215 4332 1.364626 CTCATGTGCTGCCTCGGTTC 61.365 60.000 0.00 0.00 0.00 3.62
3219 4336 2.435410 TGCTCATGTGCTGCCTCG 60.435 61.111 19.60 0.00 0.00 4.63
3239 4356 1.135257 CGTGAGTTCTAGCCCAGACAG 60.135 57.143 0.00 0.00 31.12 3.51
3258 4375 5.007724 GTCAAGCCAGTATTTATTTCTCCCG 59.992 44.000 0.00 0.00 0.00 5.14
3308 4467 9.691362 GTTATTTGCAGGTAAGATTTTCTCAAA 57.309 29.630 0.00 0.00 0.00 2.69
3309 4468 9.077885 AGTTATTTGCAGGTAAGATTTTCTCAA 57.922 29.630 0.00 0.00 0.00 3.02
3310 4469 8.635765 AGTTATTTGCAGGTAAGATTTTCTCA 57.364 30.769 0.00 0.00 0.00 3.27
3312 4471 8.860088 ACAAGTTATTTGCAGGTAAGATTTTCT 58.140 29.630 0.00 0.00 40.59 2.52
3313 4472 9.129209 GACAAGTTATTTGCAGGTAAGATTTTC 57.871 33.333 0.00 0.00 40.59 2.29
3314 4473 8.860088 AGACAAGTTATTTGCAGGTAAGATTTT 58.140 29.630 0.00 0.00 40.59 1.82
3315 4474 8.409358 AGACAAGTTATTTGCAGGTAAGATTT 57.591 30.769 0.00 0.00 40.59 2.17
3377 4763 6.145371 ACACGCTTTTTGCTGGTAAAAATATG 59.855 34.615 9.09 9.79 38.44 1.78
3399 4786 7.042335 AGGCACATAACAGAATTACTAGACAC 58.958 38.462 0.00 0.00 0.00 3.67
3426 4813 6.054860 AGTAACATGCAACACTAGGAGAAT 57.945 37.500 0.00 0.00 0.00 2.40
3535 4929 5.051374 GCTGACATAAATAGTCTCAACTCGC 60.051 44.000 0.00 0.00 36.92 5.03
3643 5037 7.468357 GCATGAAACTTATCAGAAAGATGAGGG 60.468 40.741 0.00 0.00 42.88 4.30
3644 5038 7.282675 AGCATGAAACTTATCAGAAAGATGAGG 59.717 37.037 0.00 0.00 42.88 3.86
3671 5066 4.789012 TGCCATTTGAGAAAAGCTAAGG 57.211 40.909 0.00 0.00 0.00 2.69
3745 5140 5.129155 AGGCAAATAATAGTACGGTACACCA 59.871 40.000 19.62 5.54 35.14 4.17
3762 5162 9.942850 ATTTACAGCAGTTATAAAAAGGCAAAT 57.057 25.926 0.00 0.00 0.00 2.32
3889 11542 8.954950 AAGTCTGTAGATGAAATGACAATAGG 57.045 34.615 0.00 0.00 0.00 2.57
3949 11649 6.267500 TGTTTTACGCAAAAATGCTTTCTC 57.733 33.333 0.00 0.00 39.22 2.87
3952 11652 8.680707 AAAAATGTTTTACGCAAAAATGCTTT 57.319 23.077 0.00 0.00 39.22 3.51
4050 11750 8.455682 CCCTCTCTCTAAAGTAATATAAGAGCG 58.544 40.741 0.00 0.00 34.89 5.03
4051 11751 9.304335 ACCCTCTCTCTAAAGTAATATAAGAGC 57.696 37.037 0.00 0.00 34.89 4.09
4062 11842 9.549984 AATAAAGAAGTACCCTCTCTCTAAAGT 57.450 33.333 0.00 0.00 0.00 2.66
4117 11899 5.359009 AGGCATAAGGATTGATGAAACAGTG 59.641 40.000 0.00 0.00 0.00 3.66
4336 12136 1.634973 TGGGAGATCAAGGCACATCAA 59.365 47.619 0.00 0.00 0.00 2.57
4477 12288 7.525158 TTCCTAATAATGGGAAAAGGAGAGT 57.475 36.000 0.00 0.00 42.61 3.24
4478 12289 6.488344 GCTTCCTAATAATGGGAAAAGGAGAG 59.512 42.308 0.00 0.00 44.59 3.20
4481 12292 6.086011 TGCTTCCTAATAATGGGAAAAGGA 57.914 37.500 0.00 0.00 44.59 3.36
4482 12293 6.739565 GCATGCTTCCTAATAATGGGAAAAGG 60.740 42.308 11.37 0.00 44.59 3.11
4526 12337 2.536803 CAGTGCAGCAAAAACATGTGAC 59.463 45.455 0.00 0.00 0.00 3.67
4678 12505 7.880160 TGTTCCTTCTTTCTTCAGAATTTGA 57.120 32.000 0.00 0.00 32.21 2.69
4996 12825 0.763652 TTGGTTAAGGTGCCCGTGTA 59.236 50.000 0.00 0.00 0.00 2.90
5036 12865 3.831883 CAAGGCGTCCCATGGATG 58.168 61.111 15.22 6.18 41.35 3.51
5045 12874 1.508088 CAAGGAATGCCAAGGCGTC 59.492 57.895 6.23 6.18 45.51 5.19
5065 12894 3.047877 GTCAGCAACGAACCCCGG 61.048 66.667 0.00 0.00 43.93 5.73
5149 12978 0.250467 AGTTGACGCAGGCATCACTT 60.250 50.000 0.00 0.00 0.00 3.16
5158 12987 0.441533 CAAGCTAGCAGTTGACGCAG 59.558 55.000 18.83 0.00 0.00 5.18
5189 13018 2.878406 CAAAGAGCAAAAAGGGACTCGA 59.122 45.455 0.00 0.00 38.49 4.04
5278 13107 5.403766 CAGACATAACAGATTCGATACTGGC 59.596 44.000 18.74 0.62 38.30 4.85
5290 13119 3.747529 CACACACATGCAGACATAACAGA 59.252 43.478 0.00 0.00 33.67 3.41
5336 13165 5.009010 ACAACAAAGAGAGCATTAACTGGTG 59.991 40.000 0.00 0.00 35.19 4.17
5472 13301 5.582689 ACCAAAATTATTGACTGCTAGGC 57.417 39.130 0.00 0.00 0.00 3.93
5492 13321 1.376812 CCAGGGAGCGGTGTTAACC 60.377 63.158 2.48 0.00 43.76 2.85
5493 13322 0.391263 CTCCAGGGAGCGGTGTTAAC 60.391 60.000 1.73 0.00 35.31 2.01
5494 13323 0.834687 ACTCCAGGGAGCGGTGTTAA 60.835 55.000 15.18 0.00 45.54 2.01
5495 13324 0.834687 AACTCCAGGGAGCGGTGTTA 60.835 55.000 15.18 0.00 45.54 2.41
5496 13325 2.147387 AACTCCAGGGAGCGGTGTT 61.147 57.895 15.18 0.00 45.54 3.32
5497 13326 2.526873 AACTCCAGGGAGCGGTGT 60.527 61.111 15.18 0.00 45.54 4.16
5498 13327 2.046892 CAACTCCAGGGAGCGGTG 60.047 66.667 15.18 7.44 45.54 4.94
5499 13328 3.322466 CCAACTCCAGGGAGCGGT 61.322 66.667 15.18 0.00 45.54 5.68
5500 13329 2.592993 TTCCAACTCCAGGGAGCGG 61.593 63.158 15.18 15.16 45.54 5.52
5501 13330 1.376037 GTTCCAACTCCAGGGAGCG 60.376 63.158 15.18 6.80 45.54 5.03
5502 13331 1.376037 CGTTCCAACTCCAGGGAGC 60.376 63.158 15.18 0.00 45.54 4.70
5503 13332 0.396811 AACGTTCCAACTCCAGGGAG 59.603 55.000 13.74 13.74 46.91 4.30
5504 13333 0.107831 CAACGTTCCAACTCCAGGGA 59.892 55.000 0.00 0.00 0.00 4.20
5505 13334 0.889186 CCAACGTTCCAACTCCAGGG 60.889 60.000 0.00 0.00 0.00 4.45
5506 13335 1.515521 GCCAACGTTCCAACTCCAGG 61.516 60.000 0.00 0.00 0.00 4.45
5507 13336 0.817634 TGCCAACGTTCCAACTCCAG 60.818 55.000 0.00 0.00 0.00 3.86
5508 13337 0.394488 TTGCCAACGTTCCAACTCCA 60.394 50.000 0.00 0.00 0.00 3.86
5509 13338 0.310854 CTTGCCAACGTTCCAACTCC 59.689 55.000 0.00 0.00 0.00 3.85
5510 13339 1.021968 ACTTGCCAACGTTCCAACTC 58.978 50.000 0.00 0.00 0.00 3.01
5511 13340 2.158871 TCTACTTGCCAACGTTCCAACT 60.159 45.455 0.00 0.00 0.00 3.16
5512 13341 2.215196 TCTACTTGCCAACGTTCCAAC 58.785 47.619 0.00 0.00 0.00 3.77
5513 13342 2.623878 TCTACTTGCCAACGTTCCAA 57.376 45.000 0.00 4.24 0.00 3.53
5514 13343 2.037902 TCATCTACTTGCCAACGTTCCA 59.962 45.455 0.00 0.00 0.00 3.53
5528 13357 5.267009 CGGAGCGTATCATGTATCATCTAC 58.733 45.833 0.00 0.00 0.00 2.59
5683 13513 3.004419 GCGGCCCCTCTTTTATACATTTC 59.996 47.826 0.00 0.00 0.00 2.17
5702 13532 1.143305 CTGTTTGTCTCTCACTGCGG 58.857 55.000 0.00 0.00 0.00 5.69
5767 13601 2.515901 GGTGGAGGCACAACAGGT 59.484 61.111 0.00 0.00 0.00 4.00
5770 13604 3.897122 GGGGGTGGAGGCACAACA 61.897 66.667 0.00 0.00 0.00 3.33
5820 13654 3.714001 GACGGTGGGAGGGGGAAC 61.714 72.222 0.00 0.00 0.00 3.62
5921 13761 3.991051 CACCACCAGGAGACGCGT 61.991 66.667 13.85 13.85 38.69 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.