Multiple sequence alignment - TraesCS5A01G357200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G357200 chr5A 100.000 3776 0 0 1 3776 559504754 559508529 0.000000e+00 6974
1 TraesCS5A01G357200 chr5D 90.347 3346 174 65 531 3776 443248688 443251984 0.000000e+00 4252
2 TraesCS5A01G357200 chr5D 93.534 464 28 1 1 462 318829898 318830361 0.000000e+00 689
3 TraesCS5A01G357200 chr5B 89.764 3351 189 60 531 3776 539458056 539461357 0.000000e+00 4146
4 TraesCS5A01G357200 chr5B 89.535 86 4 2 3248 3333 201387430 201387350 1.860000e-18 104
5 TraesCS5A01G357200 chr4D 94.816 463 22 2 1 462 426602092 426602553 0.000000e+00 721
6 TraesCS5A01G357200 chr1D 94.577 461 24 1 1 460 352189400 352188940 0.000000e+00 712
7 TraesCS5A01G357200 chr1A 94.565 460 24 1 1 460 265643885 265644343 0.000000e+00 710
8 TraesCS5A01G357200 chr7D 94.384 463 23 3 1 462 136690911 136690451 0.000000e+00 708
9 TraesCS5A01G357200 chr7D 93.089 463 32 0 1 463 456720186 456720648 0.000000e+00 678
10 TraesCS5A01G357200 chr2D 93.576 467 29 1 1 466 64599168 64598702 0.000000e+00 695
11 TraesCS5A01G357200 chr2D 93.926 461 27 1 1 460 532152153 532152613 0.000000e+00 695
12 TraesCS5A01G357200 chr2D 93.521 463 27 3 1 462 555389821 555389361 0.000000e+00 686
13 TraesCS5A01G357200 chr1B 87.500 160 18 2 896 1053 632389825 632389666 2.320000e-42 183
14 TraesCS5A01G357200 chr2B 89.888 89 4 2 3245 3333 720521379 720521462 3.990000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G357200 chr5A 559504754 559508529 3775 False 6974 6974 100.000 1 3776 1 chr5A.!!$F1 3775
1 TraesCS5A01G357200 chr5D 443248688 443251984 3296 False 4252 4252 90.347 531 3776 1 chr5D.!!$F2 3245
2 TraesCS5A01G357200 chr5B 539458056 539461357 3301 False 4146 4146 89.764 531 3776 1 chr5B.!!$F1 3245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 498 0.028902 CGCACGTCATCGGTGATCTA 59.971 55.0 0.0 0.0 41.85 1.98 F
1461 1529 0.250553 CAGGGGAAGTACGGTTGCAA 60.251 55.0 0.0 0.0 0.00 4.08 F
2562 2663 0.399075 ATGATGATGCCGATGCTGGA 59.601 50.0 0.0 0.0 38.71 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2126 0.340208 AACCAGTTTGGGGGTTTCCA 59.660 50.000 0.0 0.0 44.78 3.53 R
2718 2822 0.106469 CCTCGTCCTCCTCATCCTCA 60.106 60.000 0.0 0.0 0.00 3.86 R
3513 3672 1.135083 AGTTGGCATCGGAGTCGTTAG 60.135 52.381 0.0 0.0 37.69 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.181967 CGGCGAGGCGTCTTCTTG 61.182 66.667 0.00 0.00 0.00 3.02
24 25 2.815647 GGCGAGGCGTCTTCTTGG 60.816 66.667 4.69 0.00 0.00 3.61
25 26 2.048127 GCGAGGCGTCTTCTTGGT 60.048 61.111 4.69 0.00 0.00 3.67
26 27 2.095252 GCGAGGCGTCTTCTTGGTC 61.095 63.158 4.69 0.00 0.00 4.02
27 28 1.801913 CGAGGCGTCTTCTTGGTCG 60.802 63.158 4.69 0.00 0.00 4.79
28 29 2.048127 AGGCGTCTTCTTGGTCGC 60.048 61.111 0.00 0.00 46.42 5.19
30 31 3.479269 GCGTCTTCTTGGTCGCGG 61.479 66.667 6.13 0.00 39.35 6.46
31 32 2.809601 CGTCTTCTTGGTCGCGGG 60.810 66.667 6.13 0.00 0.00 6.13
32 33 3.119096 GTCTTCTTGGTCGCGGGC 61.119 66.667 6.13 0.00 0.00 6.13
33 34 4.735132 TCTTCTTGGTCGCGGGCG 62.735 66.667 6.13 6.74 41.35 6.13
50 51 4.966787 GGCTGTGCGGTTGGGGAA 62.967 66.667 0.00 0.00 0.00 3.97
51 52 3.365265 GCTGTGCGGTTGGGGAAG 61.365 66.667 0.00 0.00 0.00 3.46
52 53 3.365265 CTGTGCGGTTGGGGAAGC 61.365 66.667 0.00 0.00 0.00 3.86
69 70 4.446413 CGGCGGCGGGAACTAGTT 62.446 66.667 25.36 8.13 0.00 2.24
70 71 2.046604 GGCGGCGGGAACTAGTTT 60.047 61.111 10.02 0.00 0.00 2.66
71 72 2.396157 GGCGGCGGGAACTAGTTTG 61.396 63.158 10.02 4.45 0.00 2.93
72 73 3.035576 GCGGCGGGAACTAGTTTGC 62.036 63.158 10.02 13.68 0.00 3.68
73 74 1.375523 CGGCGGGAACTAGTTTGCT 60.376 57.895 20.62 0.00 0.00 3.91
74 75 1.359459 CGGCGGGAACTAGTTTGCTC 61.359 60.000 20.62 13.33 0.00 4.26
75 76 1.025113 GGCGGGAACTAGTTTGCTCC 61.025 60.000 20.62 13.41 0.00 4.70
76 77 1.025113 GCGGGAACTAGTTTGCTCCC 61.025 60.000 17.40 17.40 43.66 4.30
77 78 0.392595 CGGGAACTAGTTTGCTCCCC 60.393 60.000 20.26 18.19 44.16 4.81
78 79 0.392595 GGGAACTAGTTTGCTCCCCG 60.393 60.000 16.76 0.00 41.61 5.73
79 80 0.392595 GGAACTAGTTTGCTCCCCGG 60.393 60.000 10.02 0.00 0.00 5.73
80 81 1.002502 AACTAGTTTGCTCCCCGGC 60.003 57.895 1.12 0.00 0.00 6.13
81 82 2.511600 CTAGTTTGCTCCCCGGCG 60.512 66.667 0.00 0.00 34.52 6.46
82 83 4.090588 TAGTTTGCTCCCCGGCGG 62.091 66.667 21.46 21.46 34.52 6.13
126 127 3.803082 CGTTGCTGGGCGGATGTG 61.803 66.667 0.00 0.00 0.00 3.21
127 128 3.443045 GTTGCTGGGCGGATGTGG 61.443 66.667 0.00 0.00 0.00 4.17
128 129 3.645660 TTGCTGGGCGGATGTGGA 61.646 61.111 0.00 0.00 0.00 4.02
129 130 3.626996 TTGCTGGGCGGATGTGGAG 62.627 63.158 0.00 0.00 0.00 3.86
130 131 4.864334 GCTGGGCGGATGTGGAGG 62.864 72.222 0.00 0.00 0.00 4.30
131 132 4.864334 CTGGGCGGATGTGGAGGC 62.864 72.222 0.00 0.00 0.00 4.70
138 139 4.451150 GATGTGGAGGCGGCGACA 62.451 66.667 18.30 8.39 0.00 4.35
139 140 4.457496 ATGTGGAGGCGGCGACAG 62.457 66.667 18.30 0.00 30.08 3.51
148 149 2.507992 CGGCGACAGCTGGAAGAG 60.508 66.667 19.93 5.28 45.75 2.85
149 150 2.659610 GGCGACAGCTGGAAGAGT 59.340 61.111 19.93 0.00 44.37 3.24
150 151 1.446966 GGCGACAGCTGGAAGAGTC 60.447 63.158 19.93 4.06 44.37 3.36
152 153 4.177229 GACAGCTGGAAGAGTCGC 57.823 61.111 19.93 0.00 34.07 5.19
153 154 1.446966 GACAGCTGGAAGAGTCGCC 60.447 63.158 19.93 0.00 34.07 5.54
154 155 2.507992 CAGCTGGAAGAGTCGCCG 60.508 66.667 5.57 0.00 34.07 6.46
155 156 4.443266 AGCTGGAAGAGTCGCCGC 62.443 66.667 11.11 11.11 34.07 6.53
156 157 4.742201 GCTGGAAGAGTCGCCGCA 62.742 66.667 12.92 0.00 34.07 5.69
157 158 2.048222 CTGGAAGAGTCGCCGCAA 60.048 61.111 0.00 0.00 34.07 4.85
158 159 1.667830 CTGGAAGAGTCGCCGCAAA 60.668 57.895 0.00 0.00 34.07 3.68
159 160 1.227704 TGGAAGAGTCGCCGCAAAA 60.228 52.632 0.00 0.00 0.00 2.44
160 161 0.816018 TGGAAGAGTCGCCGCAAAAA 60.816 50.000 0.00 0.00 0.00 1.94
161 162 0.521735 GGAAGAGTCGCCGCAAAAAT 59.478 50.000 0.00 0.00 0.00 1.82
162 163 1.606606 GAAGAGTCGCCGCAAAAATG 58.393 50.000 0.00 0.00 0.00 2.32
163 164 0.240945 AAGAGTCGCCGCAAAAATGG 59.759 50.000 0.00 0.00 0.00 3.16
164 165 1.154035 GAGTCGCCGCAAAAATGGG 60.154 57.895 0.00 0.00 0.00 4.00
165 166 2.809174 GTCGCCGCAAAAATGGGC 60.809 61.111 0.00 0.00 43.42 5.36
207 208 4.035102 GGGAGGCGAGGGTTGCTT 62.035 66.667 0.00 0.00 0.00 3.91
208 209 2.747855 GGAGGCGAGGGTTGCTTG 60.748 66.667 0.00 0.00 0.00 4.01
209 210 2.032681 GAGGCGAGGGTTGCTTGT 59.967 61.111 0.00 0.00 0.00 3.16
210 211 1.600916 GAGGCGAGGGTTGCTTGTT 60.601 57.895 0.00 0.00 0.00 2.83
211 212 1.856265 GAGGCGAGGGTTGCTTGTTG 61.856 60.000 0.00 0.00 0.00 3.33
212 213 2.644992 GCGAGGGTTGCTTGTTGG 59.355 61.111 0.00 0.00 0.00 3.77
213 214 2.644992 CGAGGGTTGCTTGTTGGC 59.355 61.111 0.00 0.00 0.00 4.52
214 215 2.919494 CGAGGGTTGCTTGTTGGCC 61.919 63.158 0.00 0.00 0.00 5.36
215 216 2.912025 AGGGTTGCTTGTTGGCCG 60.912 61.111 0.00 0.00 0.00 6.13
216 217 3.989787 GGGTTGCTTGTTGGCCGG 61.990 66.667 0.00 0.00 0.00 6.13
217 218 3.989787 GGTTGCTTGTTGGCCGGG 61.990 66.667 2.18 0.00 0.00 5.73
218 219 3.989787 GTTGCTTGTTGGCCGGGG 61.990 66.667 2.18 0.00 0.00 5.73
222 223 4.740822 CTTGTTGGCCGGGGGAGG 62.741 72.222 2.18 0.00 0.00 4.30
230 231 4.492303 CCGGGGGAGGGAGGCTAA 62.492 72.222 0.00 0.00 0.00 3.09
231 232 2.122369 CGGGGGAGGGAGGCTAAT 60.122 66.667 0.00 0.00 0.00 1.73
232 233 2.520536 CGGGGGAGGGAGGCTAATG 61.521 68.421 0.00 0.00 0.00 1.90
233 234 1.386057 GGGGGAGGGAGGCTAATGT 60.386 63.158 0.00 0.00 0.00 2.71
234 235 1.709994 GGGGGAGGGAGGCTAATGTG 61.710 65.000 0.00 0.00 0.00 3.21
235 236 1.149401 GGGAGGGAGGCTAATGTGC 59.851 63.158 0.00 0.00 0.00 4.57
244 245 3.248043 GCTAATGTGCCACAGACCA 57.752 52.632 3.00 0.00 0.00 4.02
245 246 1.089920 GCTAATGTGCCACAGACCAG 58.910 55.000 3.00 0.00 0.00 4.00
246 247 1.089920 CTAATGTGCCACAGACCAGC 58.910 55.000 3.00 0.00 0.00 4.85
247 248 0.673333 TAATGTGCCACAGACCAGCG 60.673 55.000 3.00 0.00 0.00 5.18
248 249 3.907260 ATGTGCCACAGACCAGCGG 62.907 63.158 3.00 0.00 0.00 5.52
265 266 4.791069 GGCCCGGGGACAGGAGTA 62.791 72.222 25.28 0.00 0.00 2.59
266 267 3.155167 GCCCGGGGACAGGAGTAG 61.155 72.222 25.28 0.00 0.00 2.57
267 268 2.444140 CCCGGGGACAGGAGTAGG 60.444 72.222 14.71 0.00 0.00 3.18
268 269 3.155167 CCGGGGACAGGAGTAGGC 61.155 72.222 0.00 0.00 0.00 3.93
269 270 3.528370 CGGGGACAGGAGTAGGCG 61.528 72.222 0.00 0.00 0.00 5.52
270 271 2.043248 GGGGACAGGAGTAGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
271 272 2.424733 GGGGACAGGAGTAGGCGAC 61.425 68.421 0.00 0.00 0.00 5.19
272 273 2.424733 GGGACAGGAGTAGGCGACC 61.425 68.421 0.00 0.00 0.00 4.79
273 274 2.772691 GGACAGGAGTAGGCGACCG 61.773 68.421 0.00 0.00 0.00 4.79
274 275 3.412879 GACAGGAGTAGGCGACCGC 62.413 68.421 5.75 5.75 41.06 5.68
275 276 4.554363 CAGGAGTAGGCGACCGCG 62.554 72.222 8.36 0.00 43.06 6.46
314 315 4.520846 CGCCGACGCAAATCAGGC 62.521 66.667 0.00 0.00 44.00 4.85
315 316 3.127533 GCCGACGCAAATCAGGCT 61.128 61.111 0.00 0.00 44.06 4.58
316 317 1.813753 GCCGACGCAAATCAGGCTA 60.814 57.895 0.00 0.00 44.06 3.93
317 318 1.366111 GCCGACGCAAATCAGGCTAA 61.366 55.000 0.00 0.00 44.06 3.09
318 319 1.083489 CCGACGCAAATCAGGCTAAA 58.917 50.000 0.00 0.00 0.00 1.85
319 320 1.466950 CCGACGCAAATCAGGCTAAAA 59.533 47.619 0.00 0.00 0.00 1.52
320 321 2.095466 CCGACGCAAATCAGGCTAAAAA 60.095 45.455 0.00 0.00 0.00 1.94
339 340 2.698855 AATGAGTCAGGAATGGGTCG 57.301 50.000 0.00 0.00 0.00 4.79
340 341 0.179000 ATGAGTCAGGAATGGGTCGC 59.821 55.000 0.00 0.00 0.00 5.19
341 342 1.153349 GAGTCAGGAATGGGTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
342 343 2.124695 GTCAGGAATGGGTCGCCC 60.125 66.667 7.87 7.87 45.71 6.13
352 353 4.668118 GGTCGCCCACGGACGAAA 62.668 66.667 0.00 0.00 40.47 3.46
353 354 2.662527 GTCGCCCACGGACGAAAA 60.663 61.111 0.00 0.00 40.47 2.29
354 355 2.108566 TCGCCCACGGACGAAAAA 59.891 55.556 0.00 0.00 40.63 1.94
355 356 2.246042 TCGCCCACGGACGAAAAAC 61.246 57.895 0.00 0.00 40.63 2.43
356 357 3.567383 CGCCCACGGACGAAAAACG 62.567 63.158 0.00 0.00 41.12 3.60
365 366 4.344109 CGAAAAACGGACGCGCGT 62.344 61.111 38.52 38.52 38.46 6.01
366 367 2.496171 GAAAAACGGACGCGCGTC 60.496 61.111 45.60 45.60 43.87 5.19
385 386 4.676586 GTTTGGGTCGGCGCGTTG 62.677 66.667 8.43 0.00 0.00 4.10
398 399 2.983592 CGTTGGGCCGCCTTTTCT 60.984 61.111 9.86 0.00 0.00 2.52
399 400 2.650778 GTTGGGCCGCCTTTTCTG 59.349 61.111 9.86 0.00 0.00 3.02
400 401 2.197324 TTGGGCCGCCTTTTCTGT 59.803 55.556 9.86 0.00 0.00 3.41
401 402 1.901464 TTGGGCCGCCTTTTCTGTC 60.901 57.895 9.86 0.00 0.00 3.51
402 403 3.062466 GGGCCGCCTTTTCTGTCC 61.062 66.667 9.86 0.00 0.00 4.02
403 404 2.282180 GGCCGCCTTTTCTGTCCA 60.282 61.111 0.71 0.00 0.00 4.02
404 405 2.626780 GGCCGCCTTTTCTGTCCAC 61.627 63.158 0.71 0.00 0.00 4.02
405 406 2.966309 GCCGCCTTTTCTGTCCACG 61.966 63.158 0.00 0.00 0.00 4.94
406 407 2.556287 CGCCTTTTCTGTCCACGC 59.444 61.111 0.00 0.00 0.00 5.34
407 408 2.954611 GCCTTTTCTGTCCACGCC 59.045 61.111 0.00 0.00 0.00 5.68
408 409 2.966309 GCCTTTTCTGTCCACGCCG 61.966 63.158 0.00 0.00 0.00 6.46
409 410 1.301401 CCTTTTCTGTCCACGCCGA 60.301 57.895 0.00 0.00 0.00 5.54
410 411 1.566018 CCTTTTCTGTCCACGCCGAC 61.566 60.000 0.00 0.00 0.00 4.79
411 412 1.566018 CTTTTCTGTCCACGCCGACC 61.566 60.000 0.00 0.00 31.35 4.79
412 413 2.999739 TTTTCTGTCCACGCCGACCC 63.000 60.000 0.00 0.00 31.35 4.46
414 415 4.308458 CTGTCCACGCCGACCCAA 62.308 66.667 0.00 0.00 31.35 4.12
415 416 3.818121 CTGTCCACGCCGACCCAAA 62.818 63.158 0.00 0.00 31.35 3.28
416 417 3.351416 GTCCACGCCGACCCAAAC 61.351 66.667 0.00 0.00 0.00 2.93
417 418 4.973055 TCCACGCCGACCCAAACG 62.973 66.667 0.00 0.00 0.00 3.60
436 437 3.952675 CCGGCCGCGGATGAAATG 61.953 66.667 33.48 9.01 0.00 2.32
437 438 3.952675 CGGCCGCGGATGAAATGG 61.953 66.667 33.48 3.40 0.00 3.16
438 439 3.595758 GGCCGCGGATGAAATGGG 61.596 66.667 33.48 0.00 0.00 4.00
439 440 2.828549 GCCGCGGATGAAATGGGT 60.829 61.111 33.48 0.00 0.00 4.51
440 441 2.834618 GCCGCGGATGAAATGGGTC 61.835 63.158 33.48 1.41 0.00 4.46
441 442 2.534019 CCGCGGATGAAATGGGTCG 61.534 63.158 24.07 0.00 0.00 4.79
442 443 2.715624 GCGGATGAAATGGGTCGC 59.284 61.111 0.00 0.00 36.51 5.19
443 444 2.834618 GCGGATGAAATGGGTCGCC 61.835 63.158 0.00 0.00 37.62 5.54
444 445 2.186826 CGGATGAAATGGGTCGCCC 61.187 63.158 7.87 7.87 45.71 6.13
454 455 4.324991 GGTCGCCCCGTTGGAGTT 62.325 66.667 0.00 0.00 35.07 3.01
455 456 3.047877 GTCGCCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 35.07 3.16
458 459 3.056328 GCCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 35.39 4.26
459 460 2.750350 CCCCGTTGGAGTTGCTCT 59.250 61.111 0.00 0.00 35.39 4.09
460 461 1.980052 CCCCGTTGGAGTTGCTCTA 59.020 57.895 0.00 0.00 35.39 2.43
461 462 0.323629 CCCCGTTGGAGTTGCTCTAA 59.676 55.000 0.00 0.00 35.39 2.10
462 463 1.439679 CCCGTTGGAGTTGCTCTAAC 58.560 55.000 13.14 13.14 44.66 2.34
467 468 4.842139 GTTGGAGTTGCTCTAACATACG 57.158 45.455 16.75 0.00 46.43 3.06
468 469 3.520290 TGGAGTTGCTCTAACATACGG 57.480 47.619 0.00 0.00 41.88 4.02
469 470 3.093814 TGGAGTTGCTCTAACATACGGA 58.906 45.455 0.00 0.00 41.88 4.69
470 471 3.119245 TGGAGTTGCTCTAACATACGGAC 60.119 47.826 0.00 0.00 41.88 4.79
471 472 3.119245 GGAGTTGCTCTAACATACGGACA 60.119 47.826 0.00 0.00 41.88 4.02
472 473 3.846360 AGTTGCTCTAACATACGGACAC 58.154 45.455 0.00 0.00 41.88 3.67
473 474 2.597305 GTTGCTCTAACATACGGACACG 59.403 50.000 0.00 0.00 41.63 4.49
474 475 1.133598 TGCTCTAACATACGGACACGG 59.866 52.381 0.00 0.00 46.48 4.94
475 476 1.836383 CTCTAACATACGGACACGGC 58.164 55.000 0.00 0.00 46.48 5.68
476 477 1.133598 CTCTAACATACGGACACGGCA 59.866 52.381 0.00 0.00 46.48 5.69
477 478 1.545136 TCTAACATACGGACACGGCAA 59.455 47.619 0.00 0.00 46.48 4.52
478 479 1.657094 CTAACATACGGACACGGCAAC 59.343 52.381 0.00 0.00 46.48 4.17
490 491 4.147322 GGCAACGCACGTCATCGG 62.147 66.667 0.00 0.00 41.85 4.18
491 492 3.411351 GCAACGCACGTCATCGGT 61.411 61.111 0.00 0.00 41.85 4.69
492 493 2.469847 CAACGCACGTCATCGGTG 59.530 61.111 5.26 5.26 41.85 4.94
493 494 2.019408 CAACGCACGTCATCGGTGA 61.019 57.895 12.41 0.00 45.36 4.02
494 495 1.080093 AACGCACGTCATCGGTGAT 60.080 52.632 0.00 0.00 41.85 3.06
495 496 1.076533 AACGCACGTCATCGGTGATC 61.077 55.000 0.00 0.00 41.85 2.92
496 497 1.226688 CGCACGTCATCGGTGATCT 60.227 57.895 0.00 0.00 41.85 2.75
497 498 0.028902 CGCACGTCATCGGTGATCTA 59.971 55.000 0.00 0.00 41.85 1.98
498 499 1.759994 GCACGTCATCGGTGATCTAG 58.240 55.000 0.00 0.00 41.85 2.43
499 500 1.065701 GCACGTCATCGGTGATCTAGT 59.934 52.381 0.00 0.00 41.85 2.57
500 501 2.289820 GCACGTCATCGGTGATCTAGTA 59.710 50.000 0.00 0.00 41.85 1.82
501 502 3.607310 GCACGTCATCGGTGATCTAGTAG 60.607 52.174 0.00 0.00 41.85 2.57
502 503 3.560481 CACGTCATCGGTGATCTAGTAGT 59.440 47.826 0.00 0.00 41.85 2.73
503 504 3.560481 ACGTCATCGGTGATCTAGTAGTG 59.440 47.826 0.00 0.00 41.85 2.74
504 505 3.560481 CGTCATCGGTGATCTAGTAGTGT 59.440 47.826 0.00 0.00 36.60 3.55
505 506 4.748600 CGTCATCGGTGATCTAGTAGTGTA 59.251 45.833 0.00 0.00 36.60 2.90
506 507 5.408909 CGTCATCGGTGATCTAGTAGTGTAT 59.591 44.000 0.00 0.00 36.60 2.29
507 508 6.589139 CGTCATCGGTGATCTAGTAGTGTATA 59.411 42.308 0.00 0.00 36.60 1.47
508 509 7.278203 CGTCATCGGTGATCTAGTAGTGTATAT 59.722 40.741 0.00 0.00 36.60 0.86
509 510 8.948145 GTCATCGGTGATCTAGTAGTGTATATT 58.052 37.037 0.00 0.00 36.60 1.28
510 511 8.947115 TCATCGGTGATCTAGTAGTGTATATTG 58.053 37.037 0.00 0.00 0.00 1.90
511 512 8.731605 CATCGGTGATCTAGTAGTGTATATTGT 58.268 37.037 0.00 0.00 0.00 2.71
512 513 8.687292 TCGGTGATCTAGTAGTGTATATTGTT 57.313 34.615 0.00 0.00 0.00 2.83
513 514 9.783081 TCGGTGATCTAGTAGTGTATATTGTTA 57.217 33.333 0.00 0.00 0.00 2.41
516 517 9.843334 GTGATCTAGTAGTGTATATTGTTAGGC 57.157 37.037 0.00 0.00 0.00 3.93
517 518 9.809395 TGATCTAGTAGTGTATATTGTTAGGCT 57.191 33.333 0.00 0.00 0.00 4.58
519 520 8.405418 TCTAGTAGTGTATATTGTTAGGCTGG 57.595 38.462 0.00 0.00 0.00 4.85
520 521 8.222637 TCTAGTAGTGTATATTGTTAGGCTGGA 58.777 37.037 0.00 0.00 0.00 3.86
521 522 7.291411 AGTAGTGTATATTGTTAGGCTGGAG 57.709 40.000 0.00 0.00 0.00 3.86
522 523 7.067421 AGTAGTGTATATTGTTAGGCTGGAGA 58.933 38.462 0.00 0.00 0.00 3.71
523 524 6.412362 AGTGTATATTGTTAGGCTGGAGAG 57.588 41.667 0.00 0.00 0.00 3.20
524 525 4.991687 GTGTATATTGTTAGGCTGGAGAGC 59.008 45.833 0.00 0.00 45.40 4.09
541 542 1.141657 GAGCATGATACTCCCTGGCAA 59.858 52.381 0.00 0.00 0.00 4.52
602 606 4.648626 GCCAGTGGACTGCAGCCA 62.649 66.667 21.35 21.35 42.47 4.75
620 624 1.385347 ACAGGAACCACCCACCTCA 60.385 57.895 0.00 0.00 40.05 3.86
630 634 2.261671 CCACCTCACCGTCTTCCG 59.738 66.667 0.00 0.00 0.00 4.30
634 638 1.213013 CCTCACCGTCTTCCGTCTG 59.787 63.158 0.00 0.00 33.66 3.51
925 959 2.365237 GCCTAGGGTTCCGGGTCT 60.365 66.667 11.72 0.00 0.00 3.85
1082 1131 1.653094 CTGCTTCTCCTCGCTCTCGT 61.653 60.000 0.00 0.00 36.96 4.18
1134 1185 3.994931 ACTACCTCCGCCTTGTTATTT 57.005 42.857 0.00 0.00 0.00 1.40
1145 1196 0.312416 TTGTTATTTTGCCTGCGCGT 59.688 45.000 8.43 0.00 38.08 6.01
1166 1221 2.291475 TGCTGCATCCCTTGTTATTCCA 60.291 45.455 0.00 0.00 0.00 3.53
1176 1231 6.520272 TCCCTTGTTATTCCATTTGTTGTTG 58.480 36.000 0.00 0.00 0.00 3.33
1186 1241 1.906757 TTTGTTGTTGCGAGTTGCTG 58.093 45.000 3.50 0.00 46.63 4.41
1196 1251 0.957395 CGAGTTGCTGCCAGATTGGT 60.957 55.000 0.00 0.00 40.46 3.67
1213 1268 1.069513 TGGTTCGTTGACCGTGATTCT 59.930 47.619 0.00 0.00 42.83 2.40
1223 1278 0.384309 CCGTGATTCTAGCGCTGGTA 59.616 55.000 22.90 12.18 0.00 3.25
1228 1284 2.100916 TGATTCTAGCGCTGGTAGGTTC 59.899 50.000 22.90 10.45 34.77 3.62
1250 1306 4.022676 TCAATTTTCCTTGTTCGTTAGGCC 60.023 41.667 0.00 0.00 0.00 5.19
1329 1385 1.742768 CCTGGATCTGGAGGCGTAC 59.257 63.158 0.00 0.00 0.00 3.67
1332 1388 2.782222 GGATCTGGAGGCGTACGCA 61.782 63.158 37.99 19.66 44.11 5.24
1344 1402 1.621107 CGTACGCACTTCCGTAATGT 58.379 50.000 0.52 0.00 44.25 2.71
1363 1421 4.497473 TGTTTAGGCAATTTTGACCTCG 57.503 40.909 8.80 0.00 36.67 4.63
1366 1424 2.871096 AGGCAATTTTGACCTCGGTA 57.129 45.000 0.00 0.00 36.67 4.02
1396 1454 3.577805 ACAGTGCTTGTTTAGTTCCCT 57.422 42.857 0.00 0.00 36.31 4.20
1449 1517 2.356278 GTGGCTGCATCAGGGGAA 59.644 61.111 0.50 0.00 31.21 3.97
1461 1529 0.250553 CAGGGGAAGTACGGTTGCAA 60.251 55.000 0.00 0.00 0.00 4.08
1546 1615 2.231964 GCAGGTTTGATGATTCCAAGCA 59.768 45.455 0.00 0.00 29.79 3.91
1711 1788 1.676303 CGGGGCGTGGGTTTGTTAT 60.676 57.895 0.00 0.00 0.00 1.89
1714 1791 1.135939 GGCGTGGGTTTGTTATCGC 59.864 57.895 0.00 0.00 42.32 4.58
1762 1839 1.068434 TGCTGCAAACAAGGTTTAGGC 59.932 47.619 0.00 0.00 0.00 3.93
1763 1840 1.068434 GCTGCAAACAAGGTTTAGGCA 59.932 47.619 0.00 6.66 0.00 4.75
1780 1857 0.663153 GCAGGTGAATGGATAACGGC 59.337 55.000 0.00 0.00 0.00 5.68
1831 1908 1.087202 TCGCGTGTGATTGGCCATAC 61.087 55.000 6.09 7.35 0.00 2.39
1845 1927 5.654603 TGGCCATACGTCCACTATATAAG 57.345 43.478 0.00 0.00 0.00 1.73
1850 1932 7.822822 GGCCATACGTCCACTATATAAGAAAAT 59.177 37.037 0.00 0.00 0.00 1.82
1926 2009 5.316327 TGTTGTGATTGTGTTTGCTGTTA 57.684 34.783 0.00 0.00 0.00 2.41
2001 2084 0.949105 GTGGCCGTCGAATGAGTGTT 60.949 55.000 0.00 0.00 0.00 3.32
2004 2087 0.865769 GCCGTCGAATGAGTGTTGTT 59.134 50.000 0.00 0.00 0.00 2.83
2005 2088 1.136336 GCCGTCGAATGAGTGTTGTTC 60.136 52.381 0.00 0.00 0.00 3.18
2026 2109 2.990479 CGGAAAGCCTAGGCAGGT 59.010 61.111 34.70 19.33 44.68 4.00
2079 2162 6.994421 ACTGGTTTTATTGAAAATCCCTGT 57.006 33.333 0.00 0.00 35.16 4.00
2090 2173 3.703001 AAATCCCTGTACTGTGACTGG 57.297 47.619 0.00 0.00 37.98 4.00
2092 2175 2.391926 TCCCTGTACTGTGACTGGAA 57.608 50.000 11.83 0.00 40.03 3.53
2093 2176 2.902608 TCCCTGTACTGTGACTGGAAT 58.097 47.619 11.83 0.00 40.03 3.01
2094 2177 3.248024 TCCCTGTACTGTGACTGGAATT 58.752 45.455 11.83 0.00 40.03 2.17
2095 2178 3.007940 TCCCTGTACTGTGACTGGAATTG 59.992 47.826 11.83 0.00 40.03 2.32
2175 2260 3.525199 ACCAAGGGATTGCTTACTGATCT 59.475 43.478 0.00 0.00 0.00 2.75
2176 2261 4.018050 ACCAAGGGATTGCTTACTGATCTT 60.018 41.667 0.00 0.00 0.00 2.40
2177 2262 4.337555 CCAAGGGATTGCTTACTGATCTTG 59.662 45.833 0.00 0.00 0.00 3.02
2178 2263 3.549794 AGGGATTGCTTACTGATCTTGC 58.450 45.455 0.00 0.00 0.00 4.01
2179 2264 3.054139 AGGGATTGCTTACTGATCTTGCA 60.054 43.478 0.00 0.00 0.00 4.08
2180 2265 3.887716 GGGATTGCTTACTGATCTTGCAT 59.112 43.478 0.00 0.00 33.50 3.96
2181 2266 4.340381 GGGATTGCTTACTGATCTTGCATT 59.660 41.667 0.00 0.00 33.50 3.56
2182 2267 5.163478 GGGATTGCTTACTGATCTTGCATTT 60.163 40.000 0.00 0.00 33.50 2.32
2183 2268 6.039717 GGGATTGCTTACTGATCTTGCATTTA 59.960 38.462 0.00 0.00 33.50 1.40
2184 2269 7.255730 GGGATTGCTTACTGATCTTGCATTTAT 60.256 37.037 0.00 0.00 33.50 1.40
2185 2270 8.139989 GGATTGCTTACTGATCTTGCATTTATT 58.860 33.333 0.00 0.00 33.50 1.40
2186 2271 9.178427 GATTGCTTACTGATCTTGCATTTATTC 57.822 33.333 0.00 0.00 33.50 1.75
2187 2272 7.031226 TGCTTACTGATCTTGCATTTATTCC 57.969 36.000 0.00 0.00 0.00 3.01
2188 2273 6.830324 TGCTTACTGATCTTGCATTTATTCCT 59.170 34.615 0.00 0.00 0.00 3.36
2189 2274 7.137426 GCTTACTGATCTTGCATTTATTCCTG 58.863 38.462 0.00 0.00 0.00 3.86
2190 2275 5.511234 ACTGATCTTGCATTTATTCCTGC 57.489 39.130 0.00 0.00 38.87 4.85
2191 2276 5.198965 ACTGATCTTGCATTTATTCCTGCT 58.801 37.500 0.00 0.00 39.16 4.24
2192 2277 5.298777 ACTGATCTTGCATTTATTCCTGCTC 59.701 40.000 0.00 0.00 39.16 4.26
2302 2389 5.242171 TGCTGATGTGACTTGAATCATGTTT 59.758 36.000 3.26 0.00 30.31 2.83
2307 2394 9.234827 TGATGTGACTTGAATCATGTTTAGATT 57.765 29.630 3.26 0.00 38.35 2.40
2370 2457 9.508567 GACCAGCAAGAAATTATCAAGTAAATC 57.491 33.333 0.00 0.00 0.00 2.17
2389 2490 3.469008 TCCATTACCCTATTCACTGCG 57.531 47.619 0.00 0.00 0.00 5.18
2414 2515 7.463383 CGATGTATAGTTTTCTGTTGCTGACTC 60.463 40.741 0.00 0.00 0.00 3.36
2419 2520 4.156008 AGTTTTCTGTTGCTGACTCGTTTT 59.844 37.500 0.00 0.00 0.00 2.43
2562 2663 0.399075 ATGATGATGCCGATGCTGGA 59.601 50.000 0.00 0.00 38.71 3.86
2631 2732 2.279517 GAGGCGAACGGCGATGAT 60.280 61.111 16.62 0.00 44.92 2.45
2637 2738 3.173390 GAACGGCGATGATGCTGGC 62.173 63.158 16.62 0.00 45.70 4.85
2664 2768 2.735663 GAGCGATGATGATGATGGTGAC 59.264 50.000 0.00 0.00 0.00 3.67
2688 2792 2.791560 CGACGATGATGATGGTGAAGAC 59.208 50.000 0.00 0.00 0.00 3.01
2718 2822 2.887152 TGACGATGATGATGACGAGGAT 59.113 45.455 0.00 0.00 0.00 3.24
2754 2858 0.252881 AGGAAGATGAGGACCAGCCA 60.253 55.000 0.00 0.00 40.02 4.75
2830 2934 7.197017 CGTTAGTTTATCTGCTGTCTAGATGT 58.803 38.462 0.00 0.00 36.38 3.06
2877 2981 3.378742 CGACCTATGTAGCTTCTGTGTCT 59.621 47.826 0.00 0.00 0.00 3.41
2961 3065 5.407387 TGCAAGTAGTCTTAACATTTCGGTC 59.593 40.000 0.00 0.00 32.07 4.79
2967 3071 8.746530 AGTAGTCTTAACATTTCGGTCTTGATA 58.253 33.333 0.00 0.00 0.00 2.15
3051 3155 4.751767 TGTTCTTTGAATGGCTTTTGGT 57.248 36.364 0.00 0.00 0.00 3.67
3054 3158 5.942826 TGTTCTTTGAATGGCTTTTGGTTTT 59.057 32.000 0.00 0.00 0.00 2.43
3056 3160 7.065204 TGTTCTTTGAATGGCTTTTGGTTTTAC 59.935 33.333 0.00 0.00 0.00 2.01
3099 3228 6.588719 TTTATGCTTTTGGTGACTGCTATT 57.411 33.333 0.00 0.00 0.00 1.73
3108 3237 7.517614 TTTGGTGACTGCTATTTGAATGTTA 57.482 32.000 0.00 0.00 0.00 2.41
3186 3340 3.274288 AGCATTCGAGAAACCCATCTTC 58.726 45.455 0.00 0.00 0.00 2.87
3190 3344 0.721718 CGAGAAACCCATCTTCGCAC 59.278 55.000 0.00 0.00 0.00 5.34
3200 3354 1.731709 CATCTTCGCACGGATGTTGAA 59.268 47.619 0.00 0.00 35.82 2.69
3201 3355 2.093306 TCTTCGCACGGATGTTGAAT 57.907 45.000 0.00 0.00 0.00 2.57
3202 3356 1.731709 TCTTCGCACGGATGTTGAATG 59.268 47.619 0.00 0.00 0.00 2.67
3203 3357 1.731709 CTTCGCACGGATGTTGAATGA 59.268 47.619 0.00 0.00 0.00 2.57
3204 3358 2.022764 TCGCACGGATGTTGAATGAT 57.977 45.000 0.00 0.00 0.00 2.45
3205 3359 3.172229 TCGCACGGATGTTGAATGATA 57.828 42.857 0.00 0.00 0.00 2.15
3206 3360 3.526534 TCGCACGGATGTTGAATGATAA 58.473 40.909 0.00 0.00 0.00 1.75
3292 3446 4.626042 TCCAAAATTGTGCCACAACATAC 58.374 39.130 13.33 0.00 41.40 2.39
3293 3447 4.343526 TCCAAAATTGTGCCACAACATACT 59.656 37.500 13.33 0.00 41.40 2.12
3294 3448 4.685628 CCAAAATTGTGCCACAACATACTC 59.314 41.667 13.33 0.00 41.40 2.59
3295 3449 4.519540 AAATTGTGCCACAACATACTCC 57.480 40.909 13.33 0.00 41.40 3.85
3299 3453 2.158682 TGTGCCACAACATACTCCACTT 60.159 45.455 0.00 0.00 0.00 3.16
3309 3463 8.604035 CACAACATACTCCACTTAACATACATC 58.396 37.037 0.00 0.00 0.00 3.06
3313 3467 7.125811 ACATACTCCACTTAACATACATCCACT 59.874 37.037 0.00 0.00 0.00 4.00
3321 3475 6.886459 ACTTAACATACATCCACTGCAGAAAT 59.114 34.615 23.35 7.57 0.00 2.17
3333 3487 4.581824 CACTGCAGAAATGGCCTATACAAT 59.418 41.667 23.35 0.00 0.00 2.71
3334 3488 5.764686 CACTGCAGAAATGGCCTATACAATA 59.235 40.000 23.35 0.00 0.00 1.90
3335 3489 6.432162 CACTGCAGAAATGGCCTATACAATAT 59.568 38.462 23.35 0.00 0.00 1.28
3336 3490 7.607607 CACTGCAGAAATGGCCTATACAATATA 59.392 37.037 23.35 0.00 0.00 0.86
3337 3491 8.163408 ACTGCAGAAATGGCCTATACAATATAA 58.837 33.333 23.35 0.00 0.00 0.98
3338 3492 8.335532 TGCAGAAATGGCCTATACAATATAAC 57.664 34.615 3.32 0.00 0.00 1.89
3339 3493 7.941790 TGCAGAAATGGCCTATACAATATAACA 59.058 33.333 3.32 0.00 0.00 2.41
3340 3494 8.792633 GCAGAAATGGCCTATACAATATAACAA 58.207 33.333 3.32 0.00 0.00 2.83
3368 3522 6.964464 ACAGAGATCTCTACCGTATATGGAT 58.036 40.000 24.69 4.82 37.98 3.41
3513 3672 6.039616 CCTTTGACTACTGATTACTCTCTGC 58.960 44.000 0.00 0.00 0.00 4.26
3523 3682 4.335874 TGATTACTCTCTGCTAACGACTCC 59.664 45.833 0.00 0.00 0.00 3.85
3552 3711 2.250924 CTTGTTGAAATCCTGGGGCTT 58.749 47.619 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.181967 CAAGAAGACGCCTCGCCG 61.182 66.667 0.00 0.00 0.00 6.46
7 8 2.815647 CCAAGAAGACGCCTCGCC 60.816 66.667 0.00 0.00 0.00 5.54
8 9 2.048127 ACCAAGAAGACGCCTCGC 60.048 61.111 0.00 0.00 0.00 5.03
9 10 1.801913 CGACCAAGAAGACGCCTCG 60.802 63.158 0.00 0.00 0.00 4.63
10 11 2.095252 GCGACCAAGAAGACGCCTC 61.095 63.158 0.00 0.00 44.27 4.70
11 12 2.048127 GCGACCAAGAAGACGCCT 60.048 61.111 0.00 0.00 44.27 5.52
12 13 3.479269 CGCGACCAAGAAGACGCC 61.479 66.667 0.00 0.00 46.69 5.68
13 14 3.479269 CCGCGACCAAGAAGACGC 61.479 66.667 8.23 0.00 46.08 5.19
14 15 2.809601 CCCGCGACCAAGAAGACG 60.810 66.667 8.23 0.00 0.00 4.18
15 16 3.119096 GCCCGCGACCAAGAAGAC 61.119 66.667 8.23 0.00 0.00 3.01
16 17 4.735132 CGCCCGCGACCAAGAAGA 62.735 66.667 8.23 0.00 42.83 2.87
33 34 4.966787 TTCCCCAACCGCACAGCC 62.967 66.667 0.00 0.00 0.00 4.85
34 35 3.365265 CTTCCCCAACCGCACAGC 61.365 66.667 0.00 0.00 0.00 4.40
35 36 3.365265 GCTTCCCCAACCGCACAG 61.365 66.667 0.00 0.00 0.00 3.66
52 53 3.945304 AAACTAGTTCCCGCCGCCG 62.945 63.158 8.95 0.00 0.00 6.46
53 54 2.046604 AAACTAGTTCCCGCCGCC 60.047 61.111 8.95 0.00 0.00 6.13
54 55 3.035576 GCAAACTAGTTCCCGCCGC 62.036 63.158 8.95 1.89 0.00 6.53
55 56 1.359459 GAGCAAACTAGTTCCCGCCG 61.359 60.000 8.95 0.00 0.00 6.46
56 57 1.025113 GGAGCAAACTAGTTCCCGCC 61.025 60.000 8.95 10.11 33.25 6.13
57 58 1.025113 GGGAGCAAACTAGTTCCCGC 61.025 60.000 13.46 13.67 46.96 6.13
58 59 3.154589 GGGAGCAAACTAGTTCCCG 57.845 57.895 13.46 5.20 46.96 5.14
60 61 0.392595 CCGGGGAGCAAACTAGTTCC 60.393 60.000 8.95 5.65 38.09 3.62
61 62 1.025113 GCCGGGGAGCAAACTAGTTC 61.025 60.000 8.95 0.00 0.00 3.01
62 63 1.002502 GCCGGGGAGCAAACTAGTT 60.003 57.895 2.18 1.12 0.00 2.24
63 64 2.669240 GCCGGGGAGCAAACTAGT 59.331 61.111 2.18 0.00 0.00 2.57
64 65 2.511600 CGCCGGGGAGCAAACTAG 60.512 66.667 14.46 0.00 0.00 2.57
65 66 4.090588 CCGCCGGGGAGCAAACTA 62.091 66.667 21.95 0.00 38.47 2.24
109 110 3.803082 CACATCCGCCCAGCAACG 61.803 66.667 0.00 0.00 0.00 4.10
110 111 3.443045 CCACATCCGCCCAGCAAC 61.443 66.667 0.00 0.00 0.00 4.17
111 112 3.626996 CTCCACATCCGCCCAGCAA 62.627 63.158 0.00 0.00 0.00 3.91
112 113 4.100084 CTCCACATCCGCCCAGCA 62.100 66.667 0.00 0.00 0.00 4.41
113 114 4.864334 CCTCCACATCCGCCCAGC 62.864 72.222 0.00 0.00 0.00 4.85
114 115 4.864334 GCCTCCACATCCGCCCAG 62.864 72.222 0.00 0.00 0.00 4.45
121 122 4.451150 TGTCGCCGCCTCCACATC 62.451 66.667 0.00 0.00 0.00 3.06
122 123 4.457496 CTGTCGCCGCCTCCACAT 62.457 66.667 0.00 0.00 0.00 3.21
130 131 4.742201 TCTTCCAGCTGTCGCCGC 62.742 66.667 13.81 0.00 36.60 6.53
131 132 2.507992 CTCTTCCAGCTGTCGCCG 60.508 66.667 13.81 0.00 36.60 6.46
132 133 1.446966 GACTCTTCCAGCTGTCGCC 60.447 63.158 13.81 0.00 36.60 5.54
133 134 1.803519 CGACTCTTCCAGCTGTCGC 60.804 63.158 13.81 0.00 44.00 5.19
134 135 4.467232 CGACTCTTCCAGCTGTCG 57.533 61.111 13.81 10.33 44.41 4.35
135 136 1.446966 GGCGACTCTTCCAGCTGTC 60.447 63.158 13.81 1.01 0.00 3.51
136 137 2.659610 GGCGACTCTTCCAGCTGT 59.340 61.111 13.81 0.00 0.00 4.40
137 138 2.507992 CGGCGACTCTTCCAGCTG 60.508 66.667 6.78 6.78 0.00 4.24
138 139 4.443266 GCGGCGACTCTTCCAGCT 62.443 66.667 12.98 0.00 0.00 4.24
139 140 4.742201 TGCGGCGACTCTTCCAGC 62.742 66.667 12.98 0.00 0.00 4.85
140 141 1.227999 TTTTGCGGCGACTCTTCCAG 61.228 55.000 12.98 0.00 0.00 3.86
141 142 0.816018 TTTTTGCGGCGACTCTTCCA 60.816 50.000 12.98 0.00 0.00 3.53
142 143 0.521735 ATTTTTGCGGCGACTCTTCC 59.478 50.000 12.98 0.00 0.00 3.46
143 144 1.606606 CATTTTTGCGGCGACTCTTC 58.393 50.000 12.98 0.00 0.00 2.87
144 145 0.240945 CCATTTTTGCGGCGACTCTT 59.759 50.000 12.98 0.00 0.00 2.85
145 146 1.586154 CCCATTTTTGCGGCGACTCT 61.586 55.000 12.98 0.00 0.00 3.24
146 147 1.154035 CCCATTTTTGCGGCGACTC 60.154 57.895 12.98 0.00 0.00 3.36
147 148 2.961768 CCCATTTTTGCGGCGACT 59.038 55.556 12.98 0.00 0.00 4.18
148 149 2.809174 GCCCATTTTTGCGGCGAC 60.809 61.111 12.98 2.02 31.92 5.19
190 191 4.035102 AAGCAACCCTCGCCTCCC 62.035 66.667 0.00 0.00 0.00 4.30
191 192 2.747855 CAAGCAACCCTCGCCTCC 60.748 66.667 0.00 0.00 0.00 4.30
192 193 1.600916 AACAAGCAACCCTCGCCTC 60.601 57.895 0.00 0.00 0.00 4.70
193 194 1.898574 CAACAAGCAACCCTCGCCT 60.899 57.895 0.00 0.00 0.00 5.52
194 195 2.644992 CAACAAGCAACCCTCGCC 59.355 61.111 0.00 0.00 0.00 5.54
195 196 2.644992 CCAACAAGCAACCCTCGC 59.355 61.111 0.00 0.00 0.00 5.03
196 197 2.644992 GCCAACAAGCAACCCTCG 59.355 61.111 0.00 0.00 0.00 4.63
197 198 2.919494 CGGCCAACAAGCAACCCTC 61.919 63.158 2.24 0.00 0.00 4.30
198 199 2.912025 CGGCCAACAAGCAACCCT 60.912 61.111 2.24 0.00 0.00 4.34
199 200 3.989787 CCGGCCAACAAGCAACCC 61.990 66.667 2.24 0.00 0.00 4.11
200 201 3.989787 CCCGGCCAACAAGCAACC 61.990 66.667 2.24 0.00 0.00 3.77
201 202 3.989787 CCCCGGCCAACAAGCAAC 61.990 66.667 2.24 0.00 0.00 4.17
205 206 4.740822 CCTCCCCCGGCCAACAAG 62.741 72.222 2.24 0.00 0.00 3.16
213 214 3.794149 ATTAGCCTCCCTCCCCCGG 62.794 68.421 0.00 0.00 0.00 5.73
214 215 2.122369 ATTAGCCTCCCTCCCCCG 60.122 66.667 0.00 0.00 0.00 5.73
215 216 1.386057 ACATTAGCCTCCCTCCCCC 60.386 63.158 0.00 0.00 0.00 5.40
216 217 1.839894 CACATTAGCCTCCCTCCCC 59.160 63.158 0.00 0.00 0.00 4.81
217 218 1.149401 GCACATTAGCCTCCCTCCC 59.851 63.158 0.00 0.00 0.00 4.30
218 219 4.887615 GCACATTAGCCTCCCTCC 57.112 61.111 0.00 0.00 0.00 4.30
226 227 1.089920 CTGGTCTGTGGCACATTAGC 58.910 55.000 22.35 20.62 44.52 3.09
227 228 1.089920 GCTGGTCTGTGGCACATTAG 58.910 55.000 22.35 16.54 44.52 1.73
228 229 0.673333 CGCTGGTCTGTGGCACATTA 60.673 55.000 22.35 9.82 44.52 1.90
229 230 1.968017 CGCTGGTCTGTGGCACATT 60.968 57.895 22.35 0.00 44.52 2.71
230 231 2.359107 CGCTGGTCTGTGGCACAT 60.359 61.111 22.35 0.00 44.52 3.21
231 232 4.624364 CCGCTGGTCTGTGGCACA 62.624 66.667 20.76 20.76 0.00 4.57
248 249 4.791069 TACTCCTGTCCCCGGGCC 62.791 72.222 17.73 8.41 37.01 5.80
249 250 3.155167 CTACTCCTGTCCCCGGGC 61.155 72.222 17.73 2.17 37.01 6.13
250 251 2.444140 CCTACTCCTGTCCCCGGG 60.444 72.222 15.80 15.80 38.61 5.73
251 252 3.155167 GCCTACTCCTGTCCCCGG 61.155 72.222 0.00 0.00 0.00 5.73
252 253 3.528370 CGCCTACTCCTGTCCCCG 61.528 72.222 0.00 0.00 0.00 5.73
253 254 2.043248 TCGCCTACTCCTGTCCCC 60.043 66.667 0.00 0.00 0.00 4.81
254 255 2.424733 GGTCGCCTACTCCTGTCCC 61.425 68.421 0.00 0.00 0.00 4.46
255 256 2.772691 CGGTCGCCTACTCCTGTCC 61.773 68.421 0.00 0.00 0.00 4.02
256 257 2.799371 CGGTCGCCTACTCCTGTC 59.201 66.667 0.00 0.00 0.00 3.51
257 258 3.450115 GCGGTCGCCTACTCCTGT 61.450 66.667 3.73 0.00 34.56 4.00
258 259 4.554363 CGCGGTCGCCTACTCCTG 62.554 72.222 9.85 0.00 37.98 3.86
297 298 4.520846 GCCTGATTTGCGTCGGCG 62.521 66.667 4.29 4.29 44.10 6.46
298 299 1.366111 TTAGCCTGATTTGCGTCGGC 61.366 55.000 0.00 0.00 37.76 5.54
299 300 1.083489 TTTAGCCTGATTTGCGTCGG 58.917 50.000 0.00 0.00 0.00 4.79
300 301 2.892373 TTTTAGCCTGATTTGCGTCG 57.108 45.000 0.00 0.00 0.00 5.12
317 318 3.758554 CGACCCATTCCTGACTCATTTTT 59.241 43.478 0.00 0.00 0.00 1.94
318 319 3.347216 CGACCCATTCCTGACTCATTTT 58.653 45.455 0.00 0.00 0.00 1.82
319 320 2.941415 GCGACCCATTCCTGACTCATTT 60.941 50.000 0.00 0.00 0.00 2.32
320 321 1.407437 GCGACCCATTCCTGACTCATT 60.407 52.381 0.00 0.00 0.00 2.57
321 322 0.179000 GCGACCCATTCCTGACTCAT 59.821 55.000 0.00 0.00 0.00 2.90
322 323 1.596934 GCGACCCATTCCTGACTCA 59.403 57.895 0.00 0.00 0.00 3.41
323 324 1.153349 GGCGACCCATTCCTGACTC 60.153 63.158 0.00 0.00 0.00 3.36
324 325 2.990479 GGCGACCCATTCCTGACT 59.010 61.111 0.00 0.00 0.00 3.41
336 337 2.246042 TTTTTCGTCCGTGGGCGAC 61.246 57.895 16.17 0.00 41.33 5.19
337 338 2.108566 TTTTTCGTCCGTGGGCGA 59.891 55.556 12.21 12.21 41.33 5.54
338 339 2.250190 GTTTTTCGTCCGTGGGCG 59.750 61.111 6.55 6.55 37.95 6.13
339 340 2.250190 CGTTTTTCGTCCGTGGGC 59.750 61.111 0.00 0.00 34.52 5.36
340 341 1.594836 TCCGTTTTTCGTCCGTGGG 60.595 57.895 0.00 0.00 37.94 4.61
341 342 1.566077 GTCCGTTTTTCGTCCGTGG 59.434 57.895 0.00 0.00 37.94 4.94
342 343 1.199859 CGTCCGTTTTTCGTCCGTG 59.800 57.895 0.00 0.00 37.94 4.94
343 344 2.588585 GCGTCCGTTTTTCGTCCGT 61.589 57.895 0.00 0.00 37.94 4.69
344 345 2.169327 GCGTCCGTTTTTCGTCCG 59.831 61.111 0.00 0.00 37.94 4.79
345 346 2.169327 CGCGTCCGTTTTTCGTCC 59.831 61.111 0.00 0.00 37.94 4.79
346 347 2.496171 GCGCGTCCGTTTTTCGTC 60.496 61.111 8.43 0.00 37.94 4.20
347 348 4.344109 CGCGCGTCCGTTTTTCGT 62.344 61.111 24.19 0.00 37.94 3.85
348 349 4.344109 ACGCGCGTCCGTTTTTCG 62.344 61.111 32.73 0.00 38.47 3.46
349 350 2.496171 GACGCGCGTCCGTTTTTC 60.496 61.111 44.30 23.38 42.24 2.29
368 369 4.676586 CAACGCGCCGACCCAAAC 62.677 66.667 5.73 0.00 0.00 2.93
381 382 2.983592 AGAAAAGGCGGCCCAACG 60.984 61.111 17.02 0.00 0.00 4.10
382 383 2.142357 GACAGAAAAGGCGGCCCAAC 62.142 60.000 17.02 5.20 0.00 3.77
383 384 1.901464 GACAGAAAAGGCGGCCCAA 60.901 57.895 17.02 0.00 0.00 4.12
384 385 2.282180 GACAGAAAAGGCGGCCCA 60.282 61.111 17.02 0.00 0.00 5.36
385 386 3.062466 GGACAGAAAAGGCGGCCC 61.062 66.667 17.02 0.00 0.00 5.80
386 387 2.282180 TGGACAGAAAAGGCGGCC 60.282 61.111 12.11 12.11 0.00 6.13
387 388 2.954611 GTGGACAGAAAAGGCGGC 59.045 61.111 0.00 0.00 0.00 6.53
388 389 2.966309 GCGTGGACAGAAAAGGCGG 61.966 63.158 0.00 0.00 0.00 6.13
389 390 2.556287 GCGTGGACAGAAAAGGCG 59.444 61.111 0.00 0.00 0.00 5.52
390 391 2.954611 GGCGTGGACAGAAAAGGC 59.045 61.111 0.00 0.00 0.00 4.35
391 392 1.301401 TCGGCGTGGACAGAAAAGG 60.301 57.895 6.85 0.00 0.00 3.11
392 393 1.566018 GGTCGGCGTGGACAGAAAAG 61.566 60.000 6.85 0.00 38.70 2.27
393 394 1.595929 GGTCGGCGTGGACAGAAAA 60.596 57.895 6.85 0.00 38.70 2.29
394 395 2.029964 GGTCGGCGTGGACAGAAA 59.970 61.111 6.85 0.00 38.70 2.52
395 396 3.998672 GGGTCGGCGTGGACAGAA 61.999 66.667 6.85 0.00 38.70 3.02
397 398 3.818121 TTTGGGTCGGCGTGGACAG 62.818 63.158 6.85 0.00 38.70 3.51
398 399 3.862991 TTTGGGTCGGCGTGGACA 61.863 61.111 6.85 0.00 38.70 4.02
399 400 3.351416 GTTTGGGTCGGCGTGGAC 61.351 66.667 6.85 0.00 36.18 4.02
400 401 4.973055 CGTTTGGGTCGGCGTGGA 62.973 66.667 6.85 0.00 0.00 4.02
420 421 3.952675 CCATTTCATCCGCGGCCG 61.953 66.667 24.05 24.05 0.00 6.13
421 422 3.595758 CCCATTTCATCCGCGGCC 61.596 66.667 23.51 0.00 0.00 6.13
422 423 2.828549 ACCCATTTCATCCGCGGC 60.829 61.111 23.51 0.00 0.00 6.53
423 424 2.534019 CGACCCATTTCATCCGCGG 61.534 63.158 22.12 22.12 0.00 6.46
424 425 3.014036 CGACCCATTTCATCCGCG 58.986 61.111 0.00 0.00 0.00 6.46
425 426 2.715624 GCGACCCATTTCATCCGC 59.284 61.111 0.00 0.00 35.91 5.54
426 427 3.420943 GGCGACCCATTTCATCCG 58.579 61.111 0.00 0.00 0.00 4.18
438 439 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
441 442 2.180159 TAGAGCAACTCCAACGGGGC 62.180 60.000 0.00 0.00 36.21 5.80
442 443 0.323629 TTAGAGCAACTCCAACGGGG 59.676 55.000 0.00 0.00 38.37 5.73
443 444 1.270625 TGTTAGAGCAACTCCAACGGG 60.271 52.381 2.34 0.00 35.48 5.28
444 445 2.163818 TGTTAGAGCAACTCCAACGG 57.836 50.000 2.34 0.00 35.48 4.44
445 446 3.303495 CGTATGTTAGAGCAACTCCAACG 59.697 47.826 2.34 0.00 35.48 4.10
446 447 3.617263 CCGTATGTTAGAGCAACTCCAAC 59.383 47.826 0.00 0.00 38.05 3.77
447 448 3.512329 TCCGTATGTTAGAGCAACTCCAA 59.488 43.478 0.00 0.00 38.05 3.53
448 449 3.093814 TCCGTATGTTAGAGCAACTCCA 58.906 45.455 0.00 0.00 38.05 3.86
449 450 3.119245 TGTCCGTATGTTAGAGCAACTCC 60.119 47.826 0.00 0.00 38.05 3.85
450 451 3.858238 GTGTCCGTATGTTAGAGCAACTC 59.142 47.826 0.00 0.00 38.05 3.01
451 452 3.672511 CGTGTCCGTATGTTAGAGCAACT 60.673 47.826 0.00 0.00 38.05 3.16
452 453 2.597305 CGTGTCCGTATGTTAGAGCAAC 59.403 50.000 0.00 0.00 37.67 4.17
453 454 2.416296 CCGTGTCCGTATGTTAGAGCAA 60.416 50.000 0.00 0.00 0.00 3.91
454 455 1.133598 CCGTGTCCGTATGTTAGAGCA 59.866 52.381 0.00 0.00 0.00 4.26
455 456 1.836383 CCGTGTCCGTATGTTAGAGC 58.164 55.000 0.00 0.00 0.00 4.09
456 457 1.133598 TGCCGTGTCCGTATGTTAGAG 59.866 52.381 0.00 0.00 0.00 2.43
457 458 1.175654 TGCCGTGTCCGTATGTTAGA 58.824 50.000 0.00 0.00 0.00 2.10
458 459 1.657094 GTTGCCGTGTCCGTATGTTAG 59.343 52.381 0.00 0.00 0.00 2.34
459 460 1.712401 GTTGCCGTGTCCGTATGTTA 58.288 50.000 0.00 0.00 0.00 2.41
460 461 1.286354 CGTTGCCGTGTCCGTATGTT 61.286 55.000 0.00 0.00 0.00 2.71
461 462 1.735198 CGTTGCCGTGTCCGTATGT 60.735 57.895 0.00 0.00 0.00 2.29
462 463 3.077705 CGTTGCCGTGTCCGTATG 58.922 61.111 0.00 0.00 0.00 2.39
463 464 2.812178 GCGTTGCCGTGTCCGTAT 60.812 61.111 0.00 0.00 36.15 3.06
464 465 4.281947 TGCGTTGCCGTGTCCGTA 62.282 61.111 0.00 0.00 36.15 4.02
468 469 4.349871 GACGTGCGTTGCCGTGTC 62.350 66.667 0.00 0.90 36.12 3.67
470 471 3.629491 GATGACGTGCGTTGCCGTG 62.629 63.158 0.00 0.00 36.12 4.94
471 472 3.411351 GATGACGTGCGTTGCCGT 61.411 61.111 0.00 5.28 37.92 5.68
472 473 4.483683 CGATGACGTGCGTTGCCG 62.484 66.667 0.00 0.00 34.56 5.69
473 474 4.147322 CCGATGACGTGCGTTGCC 62.147 66.667 0.00 0.00 37.88 4.52
474 475 3.411351 ACCGATGACGTGCGTTGC 61.411 61.111 0.00 0.00 37.88 4.17
475 476 1.351430 ATCACCGATGACGTGCGTTG 61.351 55.000 0.00 0.00 37.79 4.10
476 477 1.076533 GATCACCGATGACGTGCGTT 61.077 55.000 0.00 0.00 37.79 4.84
477 478 1.516386 GATCACCGATGACGTGCGT 60.516 57.895 0.00 0.00 37.79 5.24
478 479 0.028902 TAGATCACCGATGACGTGCG 59.971 55.000 0.00 0.00 37.79 5.34
479 480 1.065701 ACTAGATCACCGATGACGTGC 59.934 52.381 0.00 0.00 37.79 5.34
480 481 3.560481 ACTACTAGATCACCGATGACGTG 59.440 47.826 0.00 0.00 37.79 4.49
481 482 3.560481 CACTACTAGATCACCGATGACGT 59.440 47.826 0.00 0.00 37.79 4.34
482 483 3.560481 ACACTACTAGATCACCGATGACG 59.440 47.826 0.00 0.00 37.79 4.35
483 484 6.804770 ATACACTACTAGATCACCGATGAC 57.195 41.667 0.00 0.00 37.79 3.06
484 485 8.947115 CAATATACACTACTAGATCACCGATGA 58.053 37.037 0.00 0.00 39.83 2.92
485 486 8.731605 ACAATATACACTACTAGATCACCGATG 58.268 37.037 0.00 0.00 0.00 3.84
486 487 8.865420 ACAATATACACTACTAGATCACCGAT 57.135 34.615 0.00 0.00 0.00 4.18
487 488 8.687292 AACAATATACACTACTAGATCACCGA 57.313 34.615 0.00 0.00 0.00 4.69
490 491 9.843334 GCCTAACAATATACACTACTAGATCAC 57.157 37.037 0.00 0.00 0.00 3.06
491 492 9.809395 AGCCTAACAATATACACTACTAGATCA 57.191 33.333 0.00 0.00 0.00 2.92
493 494 9.026121 CCAGCCTAACAATATACACTACTAGAT 57.974 37.037 0.00 0.00 0.00 1.98
494 495 8.222637 TCCAGCCTAACAATATACACTACTAGA 58.777 37.037 0.00 0.00 0.00 2.43
495 496 8.405418 TCCAGCCTAACAATATACACTACTAG 57.595 38.462 0.00 0.00 0.00 2.57
496 497 8.222637 TCTCCAGCCTAACAATATACACTACTA 58.777 37.037 0.00 0.00 0.00 1.82
497 498 7.067421 TCTCCAGCCTAACAATATACACTACT 58.933 38.462 0.00 0.00 0.00 2.57
498 499 7.286215 TCTCCAGCCTAACAATATACACTAC 57.714 40.000 0.00 0.00 0.00 2.73
499 500 6.015350 GCTCTCCAGCCTAACAATATACACTA 60.015 42.308 0.00 0.00 40.14 2.74
500 501 5.221541 GCTCTCCAGCCTAACAATATACACT 60.222 44.000 0.00 0.00 40.14 3.55
501 502 4.991687 GCTCTCCAGCCTAACAATATACAC 59.008 45.833 0.00 0.00 40.14 2.90
502 503 4.653801 TGCTCTCCAGCCTAACAATATACA 59.346 41.667 0.00 0.00 46.26 2.29
503 504 5.215252 TGCTCTCCAGCCTAACAATATAC 57.785 43.478 0.00 0.00 46.26 1.47
504 505 5.543790 TCATGCTCTCCAGCCTAACAATATA 59.456 40.000 0.00 0.00 46.26 0.86
505 506 4.349048 TCATGCTCTCCAGCCTAACAATAT 59.651 41.667 0.00 0.00 46.26 1.28
506 507 3.711190 TCATGCTCTCCAGCCTAACAATA 59.289 43.478 0.00 0.00 46.26 1.90
507 508 2.507058 TCATGCTCTCCAGCCTAACAAT 59.493 45.455 0.00 0.00 46.26 2.71
508 509 1.908619 TCATGCTCTCCAGCCTAACAA 59.091 47.619 0.00 0.00 46.26 2.83
509 510 1.571955 TCATGCTCTCCAGCCTAACA 58.428 50.000 0.00 0.00 46.26 2.41
510 511 2.926778 ATCATGCTCTCCAGCCTAAC 57.073 50.000 0.00 0.00 46.26 2.34
511 512 3.576118 GAGTATCATGCTCTCCAGCCTAA 59.424 47.826 0.00 0.00 39.23 2.69
512 513 3.161067 GAGTATCATGCTCTCCAGCCTA 58.839 50.000 0.00 0.00 39.23 3.93
513 514 1.969923 GAGTATCATGCTCTCCAGCCT 59.030 52.381 0.00 0.00 39.23 4.58
514 515 1.001860 GGAGTATCATGCTCTCCAGCC 59.998 57.143 18.80 0.00 44.85 4.85
515 516 1.001860 GGGAGTATCATGCTCTCCAGC 59.998 57.143 22.45 10.04 46.61 4.85
516 517 2.299582 CAGGGAGTATCATGCTCTCCAG 59.700 54.545 22.45 14.83 46.61 3.86
517 518 2.323599 CAGGGAGTATCATGCTCTCCA 58.676 52.381 22.45 0.00 46.61 3.86
518 519 1.622811 CCAGGGAGTATCATGCTCTCC 59.377 57.143 16.77 16.77 44.78 3.71
519 520 1.001860 GCCAGGGAGTATCATGCTCTC 59.998 57.143 2.46 0.00 36.25 3.20
520 521 1.055040 GCCAGGGAGTATCATGCTCT 58.945 55.000 2.46 0.00 36.25 4.09
521 522 0.761187 TGCCAGGGAGTATCATGCTC 59.239 55.000 0.00 0.00 36.25 4.26
522 523 1.216064 TTGCCAGGGAGTATCATGCT 58.784 50.000 0.00 0.00 36.25 3.79
523 524 2.057137 TTTGCCAGGGAGTATCATGC 57.943 50.000 0.00 0.00 36.25 4.06
524 525 2.889045 CCATTTGCCAGGGAGTATCATG 59.111 50.000 0.00 0.00 36.25 3.07
525 526 3.234234 CCATTTGCCAGGGAGTATCAT 57.766 47.619 0.00 0.00 36.25 2.45
526 527 2.734755 CCATTTGCCAGGGAGTATCA 57.265 50.000 0.00 0.00 36.25 2.15
602 606 1.385347 TGAGGTGGGTGGTTCCTGT 60.385 57.895 0.00 0.00 36.25 4.00
620 624 4.186136 TTCCAGACGGAAGACGGT 57.814 55.556 0.00 0.00 46.79 4.83
630 634 4.754667 GCCGGGTCCGTTCCAGAC 62.755 72.222 2.18 0.00 37.81 3.51
655 659 4.662961 GGTTTTGGTGCGGCTGCC 62.663 66.667 16.57 9.11 41.78 4.85
656 660 4.662961 GGGTTTTGGTGCGGCTGC 62.663 66.667 11.65 11.65 43.20 5.25
657 661 1.586154 CTAGGGTTTTGGTGCGGCTG 61.586 60.000 0.00 0.00 0.00 4.85
658 662 1.303317 CTAGGGTTTTGGTGCGGCT 60.303 57.895 0.00 0.00 0.00 5.52
659 663 2.340328 CCTAGGGTTTTGGTGCGGC 61.340 63.158 0.00 0.00 0.00 6.53
734 761 0.408309 GGGTTAGGGTTTTGGGCTCT 59.592 55.000 0.00 0.00 0.00 4.09
1145 1196 2.291475 TGGAATAACAAGGGATGCAGCA 60.291 45.455 3.51 0.00 0.00 4.41
1151 1206 6.933514 ACAACAAATGGAATAACAAGGGAT 57.066 33.333 0.00 0.00 0.00 3.85
1166 1221 2.462889 CAGCAACTCGCAACAACAAAT 58.537 42.857 0.00 0.00 46.13 2.32
1176 1231 1.136147 CAATCTGGCAGCAACTCGC 59.864 57.895 10.34 0.00 42.91 5.03
1186 1241 0.521735 GGTCAACGAACCAATCTGGC 59.478 55.000 0.00 0.00 42.67 4.85
1213 1268 3.343941 AAATTGAACCTACCAGCGCTA 57.656 42.857 10.99 0.00 0.00 4.26
1223 1278 5.592104 AACGAACAAGGAAAATTGAACCT 57.408 34.783 0.00 0.00 34.20 3.50
1228 1284 4.234574 GGCCTAACGAACAAGGAAAATTG 58.765 43.478 0.00 0.00 34.58 2.32
1250 1306 0.600782 GCAAACCACACCATGCCTTG 60.601 55.000 0.00 0.00 32.73 3.61
1314 1370 2.027751 GCGTACGCCTCCAGATCC 59.972 66.667 29.51 0.00 34.56 3.36
1344 1402 3.492337 ACCGAGGTCAAAATTGCCTAAA 58.508 40.909 8.47 0.00 35.71 1.85
1363 1421 6.548030 AACAAGCACTGTTTAGCAGGATACC 61.548 44.000 0.52 0.00 46.49 2.73
1366 1424 3.490348 AACAAGCACTGTTTAGCAGGAT 58.510 40.909 0.52 0.00 46.49 3.24
1393 1451 2.325082 CGCAGAAACCAACCGAGGG 61.325 63.158 0.00 0.00 0.00 4.30
1396 1454 1.756408 TACCCGCAGAAACCAACCGA 61.756 55.000 0.00 0.00 0.00 4.69
1461 1529 1.196104 TACCGGCCTAGGTTTGCACT 61.196 55.000 11.31 0.00 43.00 4.40
1564 1633 6.201997 GCAAAACCCGACAATAACAATTTTCT 59.798 34.615 0.00 0.00 0.00 2.52
1568 1642 4.202264 TGGCAAAACCCGACAATAACAATT 60.202 37.500 0.00 0.00 37.83 2.32
1697 1774 1.225908 CGCGATAACAAACCCACGC 60.226 57.895 0.00 0.00 42.07 5.34
1711 1788 1.669760 CTAACCAAACAGGGCGCGA 60.670 57.895 12.10 0.00 43.89 5.87
1714 1791 0.605319 TGCTCTAACCAAACAGGGCG 60.605 55.000 0.00 0.00 41.40 6.13
1741 1818 2.863704 GCCTAAACCTTGTTTGCAGCAG 60.864 50.000 0.00 0.00 0.00 4.24
1747 1824 2.955660 TCACCTGCCTAAACCTTGTTTG 59.044 45.455 2.60 0.00 0.00 2.93
1748 1825 3.306472 TCACCTGCCTAAACCTTGTTT 57.694 42.857 0.00 0.00 0.00 2.83
1751 1828 2.493278 CCATTCACCTGCCTAAACCTTG 59.507 50.000 0.00 0.00 0.00 3.61
1762 1839 2.332063 AGCCGTTATCCATTCACCTG 57.668 50.000 0.00 0.00 0.00 4.00
1763 1840 2.104281 GGTAGCCGTTATCCATTCACCT 59.896 50.000 0.00 0.00 0.00 4.00
1831 1908 9.125906 CCTAACGATTTTCTTATATAGTGGACG 57.874 37.037 0.00 0.00 0.00 4.79
1850 1932 8.723311 CCAAAAACATAACTGATAACCTAACGA 58.277 33.333 0.00 0.00 0.00 3.85
1891 1974 9.388506 ACACAATCACAACAATTTTATTGGAAA 57.611 25.926 4.61 0.00 0.00 3.13
1914 1997 5.412904 AGAGCTAATTCCTAACAGCAAACAC 59.587 40.000 0.00 0.00 36.47 3.32
1915 1998 5.560724 AGAGCTAATTCCTAACAGCAAACA 58.439 37.500 0.00 0.00 36.47 2.83
1926 2009 3.181464 GGCTTCCGTAAGAGCTAATTCCT 60.181 47.826 0.00 0.00 43.02 3.36
1987 2070 3.787826 CAAGAACAACACTCATTCGACG 58.212 45.455 0.00 0.00 0.00 5.12
2001 2084 1.610624 CCTAGGCTTTCCGCAAGAACA 60.611 52.381 0.00 0.00 41.67 3.18
2004 2087 1.078426 GCCTAGGCTTTCCGCAAGA 60.078 57.895 27.17 0.00 41.67 3.02
2005 2088 1.372087 CTGCCTAGGCTTTCCGCAAG 61.372 60.000 33.07 16.40 41.67 4.01
2043 2126 0.340208 AACCAGTTTGGGGGTTTCCA 59.660 50.000 0.00 0.00 44.78 3.53
2050 2133 6.429692 GGATTTTCAATAAAACCAGTTTGGGG 59.570 38.462 0.00 0.00 43.37 4.96
2079 2162 5.863965 TGACATTCAATTCCAGTCACAGTA 58.136 37.500 0.00 0.00 34.59 2.74
2175 2260 4.025360 ACCATGAGCAGGAATAAATGCAA 58.975 39.130 0.00 0.00 45.01 4.08
2176 2261 3.634504 ACCATGAGCAGGAATAAATGCA 58.365 40.909 0.00 0.00 45.01 3.96
2177 2262 4.098349 TCAACCATGAGCAGGAATAAATGC 59.902 41.667 0.00 0.00 42.87 3.56
2178 2263 5.840243 TCAACCATGAGCAGGAATAAATG 57.160 39.130 0.00 0.00 0.00 2.32
2179 2264 8.537728 TTATTCAACCATGAGCAGGAATAAAT 57.462 30.769 0.00 0.00 35.48 1.40
2180 2265 7.416664 GCTTATTCAACCATGAGCAGGAATAAA 60.417 37.037 0.00 0.00 37.01 1.40
2181 2266 6.039717 GCTTATTCAACCATGAGCAGGAATAA 59.960 38.462 0.00 6.15 36.13 1.40
2182 2267 5.532406 GCTTATTCAACCATGAGCAGGAATA 59.468 40.000 0.00 0.00 36.13 1.75
2183 2268 4.340381 GCTTATTCAACCATGAGCAGGAAT 59.660 41.667 0.00 0.00 36.13 3.01
2184 2269 3.696051 GCTTATTCAACCATGAGCAGGAA 59.304 43.478 0.00 0.00 36.13 3.36
2185 2270 3.054139 AGCTTATTCAACCATGAGCAGGA 60.054 43.478 0.00 0.00 38.06 3.86
2186 2271 3.285484 AGCTTATTCAACCATGAGCAGG 58.715 45.455 0.00 0.00 38.06 4.85
2187 2272 4.978083 AAGCTTATTCAACCATGAGCAG 57.022 40.909 0.00 0.00 38.06 4.24
2188 2273 4.523943 ACAAAGCTTATTCAACCATGAGCA 59.476 37.500 0.00 0.00 38.06 4.26
2189 2274 5.064441 ACAAAGCTTATTCAACCATGAGC 57.936 39.130 0.00 0.00 36.78 4.26
2190 2275 9.888878 CATATACAAAGCTTATTCAACCATGAG 57.111 33.333 0.00 0.00 36.78 2.90
2191 2276 8.352201 GCATATACAAAGCTTATTCAACCATGA 58.648 33.333 0.00 0.00 0.00 3.07
2192 2277 8.136800 TGCATATACAAAGCTTATTCAACCATG 58.863 33.333 0.00 0.00 0.00 3.66
2302 2389 6.094048 GCTCCATTGTTTACAGCTTCAATCTA 59.906 38.462 0.00 0.00 0.00 1.98
2307 2394 3.485394 TGCTCCATTGTTTACAGCTTCA 58.515 40.909 0.00 0.00 0.00 3.02
2370 2457 3.469008 TCGCAGTGAATAGGGTAATGG 57.531 47.619 0.00 0.00 0.00 3.16
2389 2490 7.463383 CGAGTCAGCAACAGAAAACTATACATC 60.463 40.741 0.00 0.00 0.00 3.06
2414 2515 1.192980 GCCTTCAGCATTGCAAAAACG 59.807 47.619 11.91 0.00 42.97 3.60
2562 2663 1.075698 TCTTCACCCGAGAAGTCCTCT 59.924 52.381 10.55 0.00 44.18 3.69
2649 2750 1.748493 TCGTCGTCACCATCATCATCA 59.252 47.619 0.00 0.00 0.00 3.07
2664 2768 1.123655 CACCATCATCATCGTCGTCG 58.876 55.000 0.00 0.00 38.55 5.12
2688 2792 1.005804 CATCATCGTCATCCTCGCCG 61.006 60.000 0.00 0.00 0.00 6.46
2718 2822 0.106469 CCTCGTCCTCCTCATCCTCA 60.106 60.000 0.00 0.00 0.00 3.86
2754 2858 2.162681 CATTTCTTCTTCTTGGCCGGT 58.837 47.619 1.90 0.00 0.00 5.28
2830 2934 1.066430 GTACCAGACCCGCTCAATCAA 60.066 52.381 0.00 0.00 0.00 2.57
2877 2981 2.746279 ATGAGACACCAAACCACCAA 57.254 45.000 0.00 0.00 0.00 3.67
2961 3065 6.039047 AGCTCCAATAAACACAGCATATCAAG 59.961 38.462 0.00 0.00 32.17 3.02
2967 3071 3.192001 CACAGCTCCAATAAACACAGCAT 59.808 43.478 0.00 0.00 32.17 3.79
3033 3137 6.760770 CAGTAAAACCAAAAGCCATTCAAAGA 59.239 34.615 0.00 0.00 0.00 2.52
3071 3177 7.614494 AGCAGTCACCAAAAGCATAAAATAAT 58.386 30.769 0.00 0.00 0.00 1.28
3074 3180 5.473066 AGCAGTCACCAAAAGCATAAAAT 57.527 34.783 0.00 0.00 0.00 1.82
3078 3184 5.709631 TCAAATAGCAGTCACCAAAAGCATA 59.290 36.000 0.00 0.00 0.00 3.14
3079 3185 4.523943 TCAAATAGCAGTCACCAAAAGCAT 59.476 37.500 0.00 0.00 0.00 3.79
3080 3186 3.888323 TCAAATAGCAGTCACCAAAAGCA 59.112 39.130 0.00 0.00 0.00 3.91
3081 3187 4.503741 TCAAATAGCAGTCACCAAAAGC 57.496 40.909 0.00 0.00 0.00 3.51
3082 3188 6.449698 ACATTCAAATAGCAGTCACCAAAAG 58.550 36.000 0.00 0.00 0.00 2.27
3084 3190 6.403866 AACATTCAAATAGCAGTCACCAAA 57.596 33.333 0.00 0.00 0.00 3.28
3088 3194 6.985188 TCCTAACATTCAAATAGCAGTCAC 57.015 37.500 0.00 0.00 0.00 3.67
3099 3228 8.748412 CCAGGTTATTCAAATCCTAACATTCAA 58.252 33.333 0.00 0.00 0.00 2.69
3108 3237 5.796502 TCCTTCCAGGTTATTCAAATCCT 57.203 39.130 0.00 0.00 36.53 3.24
3139 3268 9.938280 TTCTTCGGTTCTTCTATTAGATTTGAA 57.062 29.630 0.00 0.00 0.00 2.69
3142 3271 8.041323 TGCTTCTTCGGTTCTTCTATTAGATTT 58.959 33.333 0.00 0.00 0.00 2.17
3171 3300 0.721718 GTGCGAAGATGGGTTTCTCG 59.278 55.000 0.00 0.00 0.00 4.04
3180 3334 1.358877 TCAACATCCGTGCGAAGATG 58.641 50.000 7.81 7.81 44.44 2.90
3186 3340 3.942539 TTATCATTCAACATCCGTGCG 57.057 42.857 0.00 0.00 0.00 5.34
3190 3344 6.609237 ACACTGATTATCATTCAACATCCG 57.391 37.500 0.00 0.00 0.00 4.18
3200 3354 6.066690 CCCATCCTGAAACACTGATTATCAT 58.933 40.000 0.00 0.00 0.00 2.45
3201 3355 5.191522 TCCCATCCTGAAACACTGATTATCA 59.808 40.000 0.00 0.00 0.00 2.15
3202 3356 5.529060 GTCCCATCCTGAAACACTGATTATC 59.471 44.000 0.00 0.00 0.00 1.75
3203 3357 5.044919 TGTCCCATCCTGAAACACTGATTAT 60.045 40.000 0.00 0.00 0.00 1.28
3204 3358 4.288366 TGTCCCATCCTGAAACACTGATTA 59.712 41.667 0.00 0.00 0.00 1.75
3205 3359 3.074390 TGTCCCATCCTGAAACACTGATT 59.926 43.478 0.00 0.00 0.00 2.57
3206 3360 2.644299 TGTCCCATCCTGAAACACTGAT 59.356 45.455 0.00 0.00 0.00 2.90
3292 3446 4.572389 GCAGTGGATGTATGTTAAGTGGAG 59.428 45.833 0.00 0.00 0.00 3.86
3293 3447 4.019771 TGCAGTGGATGTATGTTAAGTGGA 60.020 41.667 0.00 0.00 0.00 4.02
3294 3448 4.260985 TGCAGTGGATGTATGTTAAGTGG 58.739 43.478 0.00 0.00 0.00 4.00
3295 3449 5.178061 TCTGCAGTGGATGTATGTTAAGTG 58.822 41.667 14.67 0.00 0.00 3.16
3299 3453 5.589855 CCATTTCTGCAGTGGATGTATGTTA 59.410 40.000 15.13 0.00 34.94 2.41
3309 3463 2.062971 ATAGGCCATTTCTGCAGTGG 57.937 50.000 14.67 15.30 36.09 4.00
3313 3467 7.941790 TGTTATATTGTATAGGCCATTTCTGCA 59.058 33.333 5.01 0.00 0.00 4.41
3334 3488 9.742144 ACGGTAGAGATCTCTGTATATTGTTAT 57.258 33.333 31.46 6.51 40.71 1.89
3336 3490 9.742144 ATACGGTAGAGATCTCTGTATATTGTT 57.258 33.333 31.46 9.27 40.71 2.83
3513 3672 1.135083 AGTTGGCATCGGAGTCGTTAG 60.135 52.381 0.00 0.00 37.69 2.34
3523 3682 3.057315 AGGATTTCAACAAGTTGGCATCG 60.057 43.478 12.54 0.00 40.78 3.84
3586 3745 7.628794 GCTCCTTCGATCTTCTTCTACTTAACA 60.629 40.741 0.00 0.00 0.00 2.41
3658 3817 8.926710 CCTGTATTTTCTATCACGTATCATTCC 58.073 37.037 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.