Multiple sequence alignment - TraesCS5A01G357100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G357100 chr5A 100.000 5138 0 0 1 5138 559096683 559091546 0.000000e+00 9489.0
1 TraesCS5A01G357100 chr5A 74.674 1611 294 69 804 2358 89382642 89384194 1.220000e-170 610.0
2 TraesCS5A01G357100 chr5A 95.588 136 6 0 4564 4699 225610777 225610642 8.660000e-53 219.0
3 TraesCS5A01G357100 chr5A 86.364 132 16 2 2445 2575 89384860 89384990 5.360000e-30 143.0
4 TraesCS5A01G357100 chr5A 90.741 54 1 3 3801 3850 309680265 309680212 9.230000e-08 69.4
5 TraesCS5A01G357100 chr5A 88.136 59 1 5 3797 3850 316517711 316517654 1.190000e-06 65.8
6 TraesCS5A01G357100 chr5D 95.721 3879 112 13 4 3850 443070553 443066697 0.000000e+00 6194.0
7 TraesCS5A01G357100 chr5D 93.711 477 30 0 3961 4437 443066701 443066225 0.000000e+00 715.0
8 TraesCS5A01G357100 chr5D 74.502 1655 311 69 802 2400 95049651 95051250 2.630000e-172 616.0
9 TraesCS5A01G357100 chr5D 90.681 279 15 4 4718 4992 443066048 443065777 1.360000e-95 361.0
10 TraesCS5A01G357100 chr5D 96.241 133 4 1 4566 4698 361648073 361647942 3.120000e-52 217.0
11 TraesCS5A01G357100 chr5D 87.121 132 15 2 2445 2575 95051877 95052007 1.150000e-31 148.0
12 TraesCS5A01G357100 chr5D 86.000 100 3 5 4893 4992 390571893 390571805 4.230000e-16 97.1
13 TraesCS5A01G357100 chr5D 100.000 41 0 0 4479 4519 443066091 443066051 5.520000e-10 76.8
14 TraesCS5A01G357100 chr5D 90.196 51 1 3 3804 3850 492288318 492288268 4.290000e-06 63.9
15 TraesCS5A01G357100 chr5B 94.617 3474 114 21 397 3842 539313002 539309574 0.000000e+00 5312.0
16 TraesCS5A01G357100 chr5B 96.491 399 13 1 4 402 539314047 539313650 0.000000e+00 658.0
17 TraesCS5A01G357100 chr5B 89.038 520 27 10 3961 4478 539309581 539309090 7.310000e-173 617.0
18 TraesCS5A01G357100 chr5B 78.373 934 171 21 2652 3574 78135160 78136073 1.240000e-160 577.0
19 TraesCS5A01G357100 chr5B 79.579 617 109 10 2959 3574 102064860 102065460 4.760000e-115 425.0
20 TraesCS5A01G357100 chr5B 90.909 297 15 7 4698 4992 539308926 539308640 6.240000e-104 388.0
21 TraesCS5A01G357100 chr5B 97.826 92 2 0 4479 4570 539309020 539308929 5.320000e-35 159.0
22 TraesCS5A01G357100 chr7A 97.656 128 3 0 4572 4699 442265755 442265882 2.410000e-53 220.0
23 TraesCS5A01G357100 chr7A 86.400 125 10 5 5014 5137 671464520 671464402 4.180000e-26 130.0
24 TraesCS5A01G357100 chr6A 96.970 132 3 1 4572 4703 32749188 32749058 2.410000e-53 220.0
25 TraesCS5A01G357100 chr6A 89.655 58 2 1 3797 3850 604890757 604890700 2.570000e-08 71.3
26 TraesCS5A01G357100 chr3D 96.899 129 4 0 4571 4699 496172883 496172755 3.120000e-52 217.0
27 TraesCS5A01G357100 chr3D 94.444 126 7 0 3845 3970 549062458 549062333 1.460000e-45 195.0
28 TraesCS5A01G357100 chr3D 95.833 120 5 0 3847 3966 614915026 614914907 1.460000e-45 195.0
29 TraesCS5A01G357100 chr3D 87.143 140 12 4 5000 5138 8560690 8560556 2.480000e-33 154.0
30 TraesCS5A01G357100 chr3D 90.000 50 1 1 3805 3850 267028100 267028051 1.540000e-05 62.1
31 TraesCS5A01G357100 chr2D 95.556 135 6 0 4565 4699 308991236 308991370 3.120000e-52 217.0
32 TraesCS5A01G357100 chr2D 95.522 134 6 0 4565 4698 561025615 561025748 1.120000e-51 215.0
33 TraesCS5A01G357100 chr2D 96.581 117 4 0 3847 3963 629474433 629474317 1.460000e-45 195.0
34 TraesCS5A01G357100 chr2D 92.126 127 10 0 3846 3972 233429767 233429641 4.090000e-41 180.0
35 TraesCS5A01G357100 chr2D 90.196 51 1 1 3804 3850 61023709 61023759 4.290000e-06 63.9
36 TraesCS5A01G357100 chr3A 95.522 134 5 1 4570 4703 507306853 507306985 4.030000e-51 213.0
37 TraesCS5A01G357100 chr7B 96.032 126 4 1 3846 3971 453316645 453316521 2.430000e-48 204.0
38 TraesCS5A01G357100 chr7B 91.837 147 10 2 4552 4698 710100069 710100213 2.430000e-48 204.0
39 TraesCS5A01G357100 chr7B 96.581 117 4 0 3847 3963 42026824 42026940 1.460000e-45 195.0
40 TraesCS5A01G357100 chr7D 95.041 121 6 0 3846 3966 565705247 565705127 1.890000e-44 191.0
41 TraesCS5A01G357100 chr7D 87.500 56 3 3 3799 3850 498284614 498284559 1.540000e-05 62.1
42 TraesCS5A01G357100 chr4D 95.000 120 6 0 3844 3963 392514705 392514824 6.790000e-44 189.0
43 TraesCS5A01G357100 chr4D 85.714 147 19 2 4992 5138 214750287 214750431 2.480000e-33 154.0
44 TraesCS5A01G357100 chr4D 82.313 147 17 4 4992 5138 64359545 64359682 9.040000e-23 119.0
45 TraesCS5A01G357100 chr4D 90.196 51 1 3 3804 3850 379169417 379169367 4.290000e-06 63.9
46 TraesCS5A01G357100 chr4D 100.000 32 0 0 3819 3850 356565220 356565189 5.560000e-05 60.2
47 TraesCS5A01G357100 chr4D 88.889 45 5 0 3803 3847 87716435 87716479 7.190000e-04 56.5
48 TraesCS5A01G357100 chr1B 94.958 119 6 0 3845 3963 10185774 10185892 2.440000e-43 187.0
49 TraesCS5A01G357100 chr1B 90.741 54 1 3 3801 3850 608052477 608052530 9.230000e-08 69.4
50 TraesCS5A01G357100 chr1B 90.566 53 1 3 3802 3850 133188854 133188906 3.320000e-07 67.6
51 TraesCS5A01G357100 chr1B 90.385 52 1 3 3803 3850 88754781 88754730 1.190000e-06 65.8
52 TraesCS5A01G357100 chr4A 82.877 146 23 2 4993 5138 384394649 384394506 4.180000e-26 130.0
53 TraesCS5A01G357100 chr6D 79.861 144 25 4 4993 5135 104835290 104835430 9.100000e-18 102.0
54 TraesCS5A01G357100 chr6D 90.196 51 1 3 3804 3850 458390135 458390185 4.290000e-06 63.9
55 TraesCS5A01G357100 chr6D 90.000 50 1 1 3805 3850 168686084 168686133 1.540000e-05 62.1
56 TraesCS5A01G357100 chr6D 85.455 55 6 2 3797 3850 319255304 319255357 7.190000e-04 56.5
57 TraesCS5A01G357100 chr6D 96.875 32 1 0 3819 3850 263940912 263940943 3.000000e-03 54.7
58 TraesCS5A01G357100 chr3B 95.652 46 2 0 3822 3867 71403771 71403726 1.980000e-09 75.0
59 TraesCS5A01G357100 chr3B 87.037 54 7 0 5085 5138 503028166 503028113 1.540000e-05 62.1
60 TraesCS5A01G357100 chr1D 88.889 63 3 1 3804 3862 240127277 240127339 1.980000e-09 75.0
61 TraesCS5A01G357100 chr1D 90.196 51 1 3 3804 3850 141215335 141215285 4.290000e-06 63.9
62 TraesCS5A01G357100 chr1D 89.362 47 1 1 3804 3846 59951847 59951893 7.190000e-04 56.5
63 TraesCS5A01G357100 chr4B 90.566 53 1 3 3802 3850 142914485 142914433 3.320000e-07 67.6
64 TraesCS5A01G357100 chr4B 90.196 51 1 1 3804 3850 492223542 492223492 4.290000e-06 63.9
65 TraesCS5A01G357100 chr6B 87.931 58 2 2 3797 3850 203685514 203685570 4.290000e-06 63.9
66 TraesCS5A01G357100 chrUn 100.000 32 0 0 3819 3850 105368174 105368205 5.560000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G357100 chr5A 559091546 559096683 5137 True 9489.0 9489 100.00000 1 5138 1 chr5A.!!$R4 5137
1 TraesCS5A01G357100 chr5A 89382642 89384990 2348 False 376.5 610 80.51900 804 2575 2 chr5A.!!$F1 1771
2 TraesCS5A01G357100 chr5D 443065777 443070553 4776 True 1836.7 6194 95.02825 4 4992 4 chr5D.!!$R4 4988
3 TraesCS5A01G357100 chr5D 95049651 95052007 2356 False 382.0 616 80.81150 802 2575 2 chr5D.!!$F1 1773
4 TraesCS5A01G357100 chr5B 539308640 539314047 5407 True 1426.8 5312 93.77620 4 4992 5 chr5B.!!$R1 4988
5 TraesCS5A01G357100 chr5B 78135160 78136073 913 False 577.0 577 78.37300 2652 3574 1 chr5B.!!$F1 922
6 TraesCS5A01G357100 chr5B 102064860 102065460 600 False 425.0 425 79.57900 2959 3574 1 chr5B.!!$F2 615


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 1130 0.850784 CCACCCGGGGGAGAAAATAT 59.149 55.000 29.25 0.0 38.96 1.28 F
920 1588 1.896465 CGGGGAGATCACCTCTATTCC 59.104 57.143 7.52 0.0 41.66 3.01 F
1703 2416 1.613836 ACTCGGTACTCGGACACTTT 58.386 50.000 0.00 0.0 39.77 2.66 F
3109 4431 0.473755 TGGGACAGAAAGAAGCTGCA 59.526 50.000 1.02 0.0 36.86 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 2126 1.993956 ACACAGTGGCAATTAAGGCA 58.006 45.0 5.31 0.0 42.25 4.75 R
2393 3499 2.476854 GCGTTCAATGCTAAGCTTCAGG 60.477 50.0 0.00 0.0 0.00 3.86 R
3606 4928 0.409876 TAGACCACTGTGCTCTCCCT 59.590 55.0 8.81 0.0 0.00 4.20 R
4681 6108 0.115745 AGGTACTCCTTCCGTCCCAA 59.884 55.0 0.00 0.0 42.12 4.12 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 9.438163 AGAAATGTCACCCAATTTTATATGGAT 57.562 29.630 0.00 0.00 39.12 3.41
180 182 5.417266 TCATAAAGGCATCCGAAAATCACAA 59.583 36.000 0.00 0.00 0.00 3.33
313 315 5.772672 AGCAAATTCACCAAAGTACACCATA 59.227 36.000 0.00 0.00 0.00 2.74
475 1130 0.850784 CCACCCGGGGGAGAAAATAT 59.149 55.000 29.25 0.00 38.96 1.28
651 1307 6.178507 GTCGAGTTGTCATTGAATCGTAATG 58.821 40.000 9.97 0.00 36.98 1.90
819 1487 3.674753 GCGCTGTTATGCTTGATTTTGTT 59.325 39.130 0.00 0.00 0.00 2.83
824 1492 6.018832 GCTGTTATGCTTGATTTTGTTTGTGT 60.019 34.615 0.00 0.00 0.00 3.72
920 1588 1.896465 CGGGGAGATCACCTCTATTCC 59.104 57.143 7.52 0.00 41.66 3.01
991 1659 9.326413 CCTACTTCTTTTAGTTTCTCTTCAACA 57.674 33.333 0.00 0.00 0.00 3.33
1000 1672 4.105486 GTTTCTCTTCAACAGTTTGTGGC 58.895 43.478 0.00 0.00 34.02 5.01
1053 1726 9.736023 AAAGTTCTGTTTTCTACACATTTCATC 57.264 29.630 0.00 0.00 32.10 2.92
1183 1859 5.721000 TCCATAAATGCCAAATTTGAGGTCT 59.279 36.000 19.86 3.85 0.00 3.85
1184 1860 6.044682 CCATAAATGCCAAATTTGAGGTCTC 58.955 40.000 19.86 2.42 0.00 3.36
1185 1861 6.127253 CCATAAATGCCAAATTTGAGGTCTCT 60.127 38.462 19.86 0.85 0.00 3.10
1449 2126 5.253096 AGTCATACTTGGTTGGGTTCCTAAT 59.747 40.000 0.00 0.00 0.00 1.73
1666 2376 3.951680 GGACCAGGAACAAAAGTTGAAGA 59.048 43.478 0.00 0.00 0.00 2.87
1697 2410 2.019249 CCACAATACTCGGTACTCGGA 58.981 52.381 0.00 0.00 39.77 4.55
1703 2416 1.613836 ACTCGGTACTCGGACACTTT 58.386 50.000 0.00 0.00 39.77 2.66
1894 2607 7.500992 TCCAGAAACAGGTAGATTATGACATC 58.499 38.462 0.00 0.00 0.00 3.06
1895 2608 6.422100 CCAGAAACAGGTAGATTATGACATCG 59.578 42.308 0.00 0.00 0.00 3.84
1918 2631 5.123227 GCCCATACTATGTGCTTTCAGTAA 58.877 41.667 0.00 0.00 30.62 2.24
2169 2894 1.614711 CAGCAAATGGGGCCTCCTA 59.385 57.895 0.00 0.00 36.20 2.94
2345 3451 3.181329 TGTGGTGACAGTATGGGAGAAT 58.819 45.455 0.00 0.00 44.46 2.40
2920 4236 1.281867 TCAGAATGGCCGACTTCCAAT 59.718 47.619 0.00 0.00 37.13 3.16
2921 4237 1.402968 CAGAATGGCCGACTTCCAATG 59.597 52.381 0.00 0.00 37.13 2.82
3007 4329 4.545678 TCCCCATTTTATGATTGTCCCAG 58.454 43.478 0.00 0.00 0.00 4.45
3109 4431 0.473755 TGGGACAGAAAGAAGCTGCA 59.526 50.000 1.02 0.00 36.86 4.41
3157 4479 3.131396 AGAAATCACAAGTGTCACCGAC 58.869 45.455 0.00 0.00 0.00 4.79
3202 4524 2.342650 CGCCTGGTTCCATGGGTTG 61.343 63.158 13.02 0.00 0.00 3.77
3447 4769 2.891941 GATGGATGCCCGCCAGTCAA 62.892 60.000 0.00 0.00 39.11 3.18
3494 4816 3.670105 TGGTCCTTCCAATGAAGCC 57.330 52.632 0.00 0.00 45.53 4.35
3501 4823 3.075283 TCCTTCCAATGAAGCCCTTGTTA 59.925 43.478 0.00 0.00 45.53 2.41
3503 4825 5.044476 TCCTTCCAATGAAGCCCTTGTTATA 60.044 40.000 0.00 0.00 45.53 0.98
3606 4928 2.334946 GCTGGCCTCGCAACATCAA 61.335 57.895 3.32 0.00 0.00 2.57
3644 4966 8.870879 GTGGTCTATAGTAGTGAAATGAACAAC 58.129 37.037 0.00 0.00 0.00 3.32
3645 4967 8.590204 TGGTCTATAGTAGTGAAATGAACAACA 58.410 33.333 0.00 0.00 0.00 3.33
3670 4992 2.890808 ACGACTCTGAAGCTTTGACA 57.109 45.000 0.00 0.00 0.00 3.58
3683 5005 2.159393 GCTTTGACACTGCAACTGTTCA 60.159 45.455 0.00 0.00 0.00 3.18
3698 5020 5.722021 ACTGTTCAAAACCAAAGACTGTT 57.278 34.783 0.00 0.00 0.00 3.16
3703 5028 5.730296 TCAAAACCAAAGACTGTTTCCAA 57.270 34.783 0.00 0.00 33.76 3.53
3722 5047 6.052405 TCCAAAAAGCCAATTCAAGCATAT 57.948 33.333 0.00 0.00 0.00 1.78
3727 5052 2.545526 AGCCAATTCAAGCATATCGACG 59.454 45.455 0.00 0.00 0.00 5.12
3845 5170 6.223138 TGTCGCTGATTTAGTACAAAGTTG 57.777 37.500 0.00 0.00 0.00 3.16
3846 5171 5.756347 TGTCGCTGATTTAGTACAAAGTTGT 59.244 36.000 1.75 1.75 44.86 3.32
3847 5172 6.924612 TGTCGCTGATTTAGTACAAAGTTGTA 59.075 34.615 0.00 0.00 42.35 2.41
3856 5181 2.833631 ACAAAGTTGTACTCCCTCCG 57.166 50.000 0.00 0.00 40.16 4.63
3857 5182 2.044758 ACAAAGTTGTACTCCCTCCGT 58.955 47.619 0.00 0.00 40.16 4.69
3858 5183 2.436911 ACAAAGTTGTACTCCCTCCGTT 59.563 45.455 0.00 0.00 40.16 4.44
3859 5184 3.064931 CAAAGTTGTACTCCCTCCGTTC 58.935 50.000 0.00 0.00 0.00 3.95
3860 5185 1.264295 AGTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
3861 5186 0.971386 GTTGTACTCCCTCCGTTCCA 59.029 55.000 0.00 0.00 0.00 3.53
3862 5187 1.345415 GTTGTACTCCCTCCGTTCCAA 59.655 52.381 0.00 0.00 0.00 3.53
3863 5188 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3864 5189 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
3865 5190 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
3866 5191 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
3867 5192 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3868 5193 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3869 5194 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
3870 5195 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
3871 5196 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
3872 5197 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
3873 5198 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
3874 5199 4.392138 CCTCCGTTCCAAATTACTTGTCTC 59.608 45.833 0.00 0.00 32.65 3.36
3875 5200 4.963373 TCCGTTCCAAATTACTTGTCTCA 58.037 39.130 0.00 0.00 32.65 3.27
3876 5201 5.369833 TCCGTTCCAAATTACTTGTCTCAA 58.630 37.500 0.00 0.00 32.65 3.02
3877 5202 5.823570 TCCGTTCCAAATTACTTGTCTCAAA 59.176 36.000 0.00 0.00 32.65 2.69
3878 5203 6.319152 TCCGTTCCAAATTACTTGTCTCAAAA 59.681 34.615 0.00 0.00 32.65 2.44
3879 5204 6.636850 CCGTTCCAAATTACTTGTCTCAAAAG 59.363 38.462 0.00 0.00 32.65 2.27
3880 5205 7.193595 CGTTCCAAATTACTTGTCTCAAAAGT 58.806 34.615 0.00 0.00 40.82 2.66
3881 5206 7.165812 CGTTCCAAATTACTTGTCTCAAAAGTG 59.834 37.037 0.00 0.00 38.32 3.16
3882 5207 7.038154 TCCAAATTACTTGTCTCAAAAGTGG 57.962 36.000 0.00 0.00 38.32 4.00
3883 5208 6.831353 TCCAAATTACTTGTCTCAAAAGTGGA 59.169 34.615 0.00 0.00 38.32 4.02
3884 5209 7.505585 TCCAAATTACTTGTCTCAAAAGTGGAT 59.494 33.333 0.00 0.00 38.32 3.41
3885 5210 8.792633 CCAAATTACTTGTCTCAAAAGTGGATA 58.207 33.333 0.00 0.00 38.32 2.59
3892 5217 8.143835 ACTTGTCTCAAAAGTGGATAAAAATGG 58.856 33.333 0.00 0.00 36.52 3.16
3893 5218 7.831691 TGTCTCAAAAGTGGATAAAAATGGA 57.168 32.000 0.00 0.00 0.00 3.41
3894 5219 8.421249 TGTCTCAAAAGTGGATAAAAATGGAT 57.579 30.769 0.00 0.00 0.00 3.41
3895 5220 8.306038 TGTCTCAAAAGTGGATAAAAATGGATG 58.694 33.333 0.00 0.00 0.00 3.51
3896 5221 8.306761 GTCTCAAAAGTGGATAAAAATGGATGT 58.693 33.333 0.00 0.00 0.00 3.06
3897 5222 9.527157 TCTCAAAAGTGGATAAAAATGGATGTA 57.473 29.630 0.00 0.00 0.00 2.29
3927 5252 9.962783 ACAACTAAAATACGTCTAGATACATCC 57.037 33.333 0.00 0.00 0.00 3.51
3928 5253 9.961265 CAACTAAAATACGTCTAGATACATCCA 57.039 33.333 0.00 0.00 0.00 3.41
3934 5259 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
3935 5260 6.716934 ACGTCTAGATACATCCATTTCTGT 57.283 37.500 0.00 0.00 0.00 3.41
3936 5261 6.507900 ACGTCTAGATACATCCATTTCTGTG 58.492 40.000 0.00 0.00 0.00 3.66
3937 5262 6.321435 ACGTCTAGATACATCCATTTCTGTGA 59.679 38.462 0.00 0.00 0.00 3.58
3938 5263 6.638873 CGTCTAGATACATCCATTTCTGTGAC 59.361 42.308 0.00 0.00 0.00 3.67
3939 5264 7.492524 GTCTAGATACATCCATTTCTGTGACA 58.507 38.462 0.00 0.00 0.00 3.58
3940 5265 7.981789 GTCTAGATACATCCATTTCTGTGACAA 59.018 37.037 0.00 0.00 0.00 3.18
3941 5266 8.708378 TCTAGATACATCCATTTCTGTGACAAT 58.292 33.333 0.00 0.00 0.00 2.71
3942 5267 9.334947 CTAGATACATCCATTTCTGTGACAATT 57.665 33.333 0.00 0.00 0.00 2.32
3944 5269 9.685276 AGATACATCCATTTCTGTGACAATTAA 57.315 29.630 0.00 0.00 0.00 1.40
3948 5273 8.253113 ACATCCATTTCTGTGACAATTAATTCC 58.747 33.333 0.00 0.00 0.00 3.01
3949 5274 7.169158 TCCATTTCTGTGACAATTAATTCCC 57.831 36.000 0.00 0.00 0.00 3.97
3950 5275 6.723515 TCCATTTCTGTGACAATTAATTCCCA 59.276 34.615 0.00 0.00 0.00 4.37
3951 5276 7.234371 TCCATTTCTGTGACAATTAATTCCCAA 59.766 33.333 0.00 0.00 0.00 4.12
3952 5277 7.331687 CCATTTCTGTGACAATTAATTCCCAAC 59.668 37.037 0.00 0.00 0.00 3.77
3953 5278 5.621197 TCTGTGACAATTAATTCCCAACG 57.379 39.130 0.00 0.00 0.00 4.10
3954 5279 4.457603 TCTGTGACAATTAATTCCCAACGG 59.542 41.667 0.00 0.84 0.00 4.44
3955 5280 4.399219 TGTGACAATTAATTCCCAACGGA 58.601 39.130 0.00 0.00 35.88 4.69
3956 5281 4.457603 TGTGACAATTAATTCCCAACGGAG 59.542 41.667 0.00 0.00 40.10 4.63
3957 5282 4.013728 TGACAATTAATTCCCAACGGAGG 58.986 43.478 0.00 0.00 40.10 4.30
3987 5313 8.154649 ACTAAATCAGCGACAATTAATAAGGG 57.845 34.615 0.00 0.00 0.00 3.95
3988 5314 5.438761 AATCAGCGACAATTAATAAGGGC 57.561 39.130 0.00 0.00 0.00 5.19
4053 5379 3.963428 AGTTCTCAACTCTATTGCGGT 57.037 42.857 0.00 0.00 37.02 5.68
4068 5394 0.992802 GCGGTCTCTAGAAACGCAAG 59.007 55.000 23.44 4.53 45.67 4.01
4161 5487 6.207810 TGTTTTAATATCACCGCCTTTGAGTT 59.792 34.615 0.00 0.00 0.00 3.01
4165 5491 0.034896 TCACCGCCTTTGAGTTCTCC 59.965 55.000 0.00 0.00 0.00 3.71
4180 5506 3.265995 AGTTCTCCGGTGGTTCCATTTAT 59.734 43.478 0.00 0.00 35.57 1.40
4206 5532 4.777781 CATGCTGGCATGTTGACG 57.222 55.556 22.78 1.45 46.20 4.35
4219 5545 0.796312 GTTGACGGCGTGATGTGATT 59.204 50.000 21.19 0.00 0.00 2.57
4363 5689 7.332557 AGGTGATTGAACCATACAACGTATTA 58.667 34.615 0.00 0.00 43.20 0.98
4437 5794 9.928236 GCAATTTTGAGATAGAAGAAGTATGTC 57.072 33.333 0.00 0.00 0.00 3.06
4570 5997 2.372074 GGTCCGGCCCTATCCAACA 61.372 63.158 0.00 0.00 0.00 3.33
4571 5998 1.705997 GGTCCGGCCCTATCCAACAT 61.706 60.000 0.00 0.00 0.00 2.71
4572 5999 1.053424 GTCCGGCCCTATCCAACATA 58.947 55.000 0.00 0.00 0.00 2.29
4573 6000 1.053424 TCCGGCCCTATCCAACATAC 58.947 55.000 0.00 0.00 0.00 2.39
4574 6001 1.056660 CCGGCCCTATCCAACATACT 58.943 55.000 0.00 0.00 0.00 2.12
4575 6002 1.002087 CCGGCCCTATCCAACATACTC 59.998 57.143 0.00 0.00 0.00 2.59
4576 6003 1.002087 CGGCCCTATCCAACATACTCC 59.998 57.143 0.00 0.00 0.00 3.85
4577 6004 1.351350 GGCCCTATCCAACATACTCCC 59.649 57.143 0.00 0.00 0.00 4.30
4578 6005 2.339769 GCCCTATCCAACATACTCCCT 58.660 52.381 0.00 0.00 0.00 4.20
4579 6006 2.711547 GCCCTATCCAACATACTCCCTT 59.288 50.000 0.00 0.00 0.00 3.95
4580 6007 3.244596 GCCCTATCCAACATACTCCCTTC 60.245 52.174 0.00 0.00 0.00 3.46
4581 6008 3.006967 CCCTATCCAACATACTCCCTTCG 59.993 52.174 0.00 0.00 0.00 3.79
4582 6009 3.641906 CCTATCCAACATACTCCCTTCGT 59.358 47.826 0.00 0.00 0.00 3.85
4583 6010 3.821421 ATCCAACATACTCCCTTCGTC 57.179 47.619 0.00 0.00 0.00 4.20
4584 6011 1.829222 TCCAACATACTCCCTTCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
4585 6012 1.134491 CCAACATACTCCCTTCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
4586 6013 1.553248 CAACATACTCCCTTCGTCCCA 59.447 52.381 0.00 0.00 0.00 4.37
4587 6014 1.946984 ACATACTCCCTTCGTCCCAA 58.053 50.000 0.00 0.00 0.00 4.12
4588 6015 2.262637 ACATACTCCCTTCGTCCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
4589 6016 2.640826 ACATACTCCCTTCGTCCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
4590 6017 3.265995 ACATACTCCCTTCGTCCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
4591 6018 2.971901 ACTCCCTTCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4592 6019 2.791655 ACTCCCTTCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
4593 6020 2.375509 ACTCCCTTCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
4594 6021 3.181433 ACTCCCTTCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
4595 6022 3.153919 TCCCTTCGTCCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
4596 6023 2.890945 CCCTTCGTCCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
4597 6024 3.057526 CCCTTCGTCCCAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
4598 6025 3.821033 CCTTCGTCCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
4599 6026 4.278419 CCTTCGTCCCAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
4600 6027 5.472137 CCTTCGTCCCAAAATTCTTGTCTTA 59.528 40.000 0.00 0.00 0.00 2.10
4601 6028 6.348540 CCTTCGTCCCAAAATTCTTGTCTTAG 60.349 42.308 0.00 0.00 0.00 2.18
4602 6029 5.860611 TCGTCCCAAAATTCTTGTCTTAGA 58.139 37.500 0.00 0.00 0.00 2.10
4603 6030 6.472887 TCGTCCCAAAATTCTTGTCTTAGAT 58.527 36.000 0.00 0.00 0.00 1.98
4604 6031 6.940298 TCGTCCCAAAATTCTTGTCTTAGATT 59.060 34.615 0.00 0.00 0.00 2.40
4605 6032 7.447238 TCGTCCCAAAATTCTTGTCTTAGATTT 59.553 33.333 0.00 0.00 0.00 2.17
4606 6033 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4607 6034 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4608 6035 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4609 6036 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4617 6044 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
4618 6045 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
4620 6047 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
4621 6048 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
4628 6055 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
4629 6056 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
4630 6057 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
4631 6058 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
4632 6059 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
4633 6060 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
4634 6061 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
4635 6062 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
4636 6063 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
4637 6064 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
4638 6065 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
4639 6066 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
4640 6067 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
4641 6068 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
4642 6069 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
4652 6079 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
4653 6080 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
4654 6081 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
4655 6082 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
4673 6100 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
4674 6101 9.529325 CATCCGTATCTAGACAAATTTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
4676 6103 9.932207 TCCGTATCTAGACAAATTTAAGACAAA 57.068 29.630 0.00 0.00 0.00 2.83
4688 6115 9.432077 CAAATTTAAGACAAAAATTTTGGGACG 57.568 29.630 20.79 0.00 41.45 4.79
4689 6116 7.722795 ATTTAAGACAAAAATTTTGGGACGG 57.277 32.000 20.79 0.00 0.00 4.79
4690 6117 6.466885 TTAAGACAAAAATTTTGGGACGGA 57.533 33.333 20.79 1.94 0.00 4.69
4691 6118 5.346181 AAGACAAAAATTTTGGGACGGAA 57.654 34.783 20.79 0.00 0.00 4.30
4692 6119 4.944048 AGACAAAAATTTTGGGACGGAAG 58.056 39.130 20.79 0.00 0.00 3.46
4693 6120 4.055360 GACAAAAATTTTGGGACGGAAGG 58.945 43.478 20.79 0.00 0.00 3.46
4694 6121 3.707102 ACAAAAATTTTGGGACGGAAGGA 59.293 39.130 20.79 0.00 0.00 3.36
4695 6122 4.202212 ACAAAAATTTTGGGACGGAAGGAG 60.202 41.667 20.79 0.00 0.00 3.69
4696 6123 2.971901 AATTTTGGGACGGAAGGAGT 57.028 45.000 0.00 0.00 0.00 3.85
4716 6143 8.946797 AGGAGTACCTTACAAACTAGACTAAA 57.053 34.615 0.00 0.00 45.36 1.85
4728 6155 6.686130 AACTAGACTAAACGAAACACGATG 57.314 37.500 0.00 0.00 45.77 3.84
4801 6230 1.815003 CCATCAGAGTTTTGGTGAGCC 59.185 52.381 0.00 0.00 30.58 4.70
4806 6235 3.381272 TCAGAGTTTTGGTGAGCCTTTTG 59.619 43.478 0.00 0.00 35.27 2.44
4813 6242 0.108945 GGTGAGCCTTTTGCATCTGC 60.109 55.000 0.00 0.00 44.83 4.26
4824 6253 5.484173 TTTTGCATCTGCCTAGAATTACG 57.516 39.130 0.00 0.00 41.18 3.18
4878 6307 6.238211 GGATGACCAAGTTAACAGATTCATCG 60.238 42.308 21.56 0.00 39.24 3.84
4921 6350 4.515191 GCTTCAACTGTTCATGGTTAGACA 59.485 41.667 0.00 0.00 0.00 3.41
4922 6351 5.182001 GCTTCAACTGTTCATGGTTAGACAT 59.818 40.000 0.00 0.00 0.00 3.06
4923 6352 6.294176 GCTTCAACTGTTCATGGTTAGACATT 60.294 38.462 0.00 0.00 0.00 2.71
4924 6353 7.094805 GCTTCAACTGTTCATGGTTAGACATTA 60.095 37.037 0.00 0.00 0.00 1.90
4925 6354 7.905604 TCAACTGTTCATGGTTAGACATTAG 57.094 36.000 0.00 0.00 0.00 1.73
4926 6355 7.676004 TCAACTGTTCATGGTTAGACATTAGA 58.324 34.615 0.00 0.00 0.00 2.10
4927 6356 7.602644 TCAACTGTTCATGGTTAGACATTAGAC 59.397 37.037 0.00 0.00 0.00 2.59
4945 6374 1.154016 CTTGTGCTCTGCATGCAGC 60.154 57.895 37.48 29.32 41.91 5.25
4992 6426 9.996554 TCAACTCTAATGACATGACTCTTAAAA 57.003 29.630 0.00 0.00 0.00 1.52
4995 6429 9.442047 ACTCTAATGACATGACTCTTAAAAAGG 57.558 33.333 0.00 0.00 0.00 3.11
4996 6430 9.658799 CTCTAATGACATGACTCTTAAAAAGGA 57.341 33.333 0.00 0.00 0.00 3.36
4997 6431 9.658799 TCTAATGACATGACTCTTAAAAAGGAG 57.341 33.333 0.00 0.00 35.86 3.69
4998 6432 6.749923 ATGACATGACTCTTAAAAAGGAGC 57.250 37.500 0.00 0.00 33.29 4.70
4999 6433 5.869579 TGACATGACTCTTAAAAAGGAGCT 58.130 37.500 0.00 0.00 33.29 4.09
5000 6434 5.934625 TGACATGACTCTTAAAAAGGAGCTC 59.065 40.000 4.71 4.71 33.29 4.09
5001 6435 4.932200 ACATGACTCTTAAAAAGGAGCTCG 59.068 41.667 7.83 0.00 33.29 5.03
5002 6436 3.926616 TGACTCTTAAAAAGGAGCTCGG 58.073 45.455 7.83 0.00 33.29 4.63
5003 6437 3.263261 GACTCTTAAAAAGGAGCTCGGG 58.737 50.000 7.83 0.00 33.29 5.14
5004 6438 2.010497 CTCTTAAAAAGGAGCTCGGGC 58.990 52.381 7.83 0.00 39.06 6.13
5005 6439 1.095600 CTTAAAAAGGAGCTCGGGCC 58.904 55.000 2.00 0.00 39.73 5.80
5006 6440 0.402504 TTAAAAAGGAGCTCGGGCCA 59.597 50.000 2.00 0.00 39.73 5.36
5007 6441 0.322187 TAAAAAGGAGCTCGGGCCAC 60.322 55.000 2.00 0.00 39.73 5.01
5008 6442 2.351924 AAAAAGGAGCTCGGGCCACA 62.352 55.000 2.00 0.00 39.73 4.17
5009 6443 3.553095 AAAGGAGCTCGGGCCACAC 62.553 63.158 2.00 0.00 39.73 3.82
5012 6446 4.008933 GAGCTCGGGCCACACACT 62.009 66.667 2.00 0.00 39.73 3.55
5013 6447 3.941657 GAGCTCGGGCCACACACTC 62.942 68.421 2.00 0.07 39.73 3.51
5014 6448 4.008933 GCTCGGGCCACACACTCT 62.009 66.667 4.39 0.00 0.00 3.24
5015 6449 2.743718 CTCGGGCCACACACTCTT 59.256 61.111 4.39 0.00 0.00 2.85
5016 6450 1.374758 CTCGGGCCACACACTCTTC 60.375 63.158 4.39 0.00 0.00 2.87
5017 6451 1.821061 CTCGGGCCACACACTCTTCT 61.821 60.000 4.39 0.00 0.00 2.85
5018 6452 0.541063 TCGGGCCACACACTCTTCTA 60.541 55.000 4.39 0.00 0.00 2.10
5019 6453 0.320374 CGGGCCACACACTCTTCTAA 59.680 55.000 4.39 0.00 0.00 2.10
5020 6454 1.809684 GGGCCACACACTCTTCTAAC 58.190 55.000 4.39 0.00 0.00 2.34
5021 6455 1.610886 GGGCCACACACTCTTCTAACC 60.611 57.143 4.39 0.00 0.00 2.85
5022 6456 1.071699 GGCCACACACTCTTCTAACCA 59.928 52.381 0.00 0.00 0.00 3.67
5023 6457 2.290323 GGCCACACACTCTTCTAACCAT 60.290 50.000 0.00 0.00 0.00 3.55
5024 6458 3.003480 GCCACACACTCTTCTAACCATC 58.997 50.000 0.00 0.00 0.00 3.51
5025 6459 3.600388 CCACACACTCTTCTAACCATCC 58.400 50.000 0.00 0.00 0.00 3.51
5026 6460 3.007940 CCACACACTCTTCTAACCATCCA 59.992 47.826 0.00 0.00 0.00 3.41
5027 6461 4.323792 CCACACACTCTTCTAACCATCCAT 60.324 45.833 0.00 0.00 0.00 3.41
5028 6462 5.248640 CACACACTCTTCTAACCATCCATT 58.751 41.667 0.00 0.00 0.00 3.16
5029 6463 6.406370 CACACACTCTTCTAACCATCCATTA 58.594 40.000 0.00 0.00 0.00 1.90
5030 6464 7.050377 CACACACTCTTCTAACCATCCATTAT 58.950 38.462 0.00 0.00 0.00 1.28
5031 6465 7.011763 CACACACTCTTCTAACCATCCATTATG 59.988 40.741 0.00 0.00 35.15 1.90
5032 6466 7.092891 ACACACTCTTCTAACCATCCATTATGA 60.093 37.037 0.00 0.00 37.86 2.15
5033 6467 7.225538 CACACTCTTCTAACCATCCATTATGAC 59.774 40.741 0.00 0.00 37.86 3.06
5034 6468 7.092891 ACACTCTTCTAACCATCCATTATGACA 60.093 37.037 0.00 0.00 37.86 3.58
5035 6469 7.225538 CACTCTTCTAACCATCCATTATGACAC 59.774 40.741 0.00 0.00 37.86 3.67
5036 6470 6.280643 TCTTCTAACCATCCATTATGACACG 58.719 40.000 0.00 0.00 37.86 4.49
5037 6471 5.607939 TCTAACCATCCATTATGACACGT 57.392 39.130 0.00 0.00 37.86 4.49
5038 6472 5.597806 TCTAACCATCCATTATGACACGTC 58.402 41.667 0.00 0.00 37.86 4.34
5039 6473 3.904800 ACCATCCATTATGACACGTCA 57.095 42.857 1.71 1.71 44.59 4.35
5040 6474 4.214986 ACCATCCATTATGACACGTCAA 57.785 40.909 3.61 0.00 43.58 3.18
5041 6475 4.584874 ACCATCCATTATGACACGTCAAA 58.415 39.130 3.61 1.28 43.58 2.69
5042 6476 4.394920 ACCATCCATTATGACACGTCAAAC 59.605 41.667 3.61 0.00 43.58 2.93
5043 6477 4.635765 CCATCCATTATGACACGTCAAACT 59.364 41.667 3.61 0.00 43.58 2.66
5044 6478 5.123820 CCATCCATTATGACACGTCAAACTT 59.876 40.000 3.61 0.00 43.58 2.66
5045 6479 6.349280 CCATCCATTATGACACGTCAAACTTT 60.349 38.462 3.61 0.00 43.58 2.66
5046 6480 6.627395 TCCATTATGACACGTCAAACTTTT 57.373 33.333 3.61 0.00 43.58 2.27
5047 6481 7.033530 TCCATTATGACACGTCAAACTTTTT 57.966 32.000 3.61 0.00 43.58 1.94
5048 6482 8.155821 TCCATTATGACACGTCAAACTTTTTA 57.844 30.769 3.61 0.00 43.58 1.52
5049 6483 8.622157 TCCATTATGACACGTCAAACTTTTTAA 58.378 29.630 3.61 0.00 43.58 1.52
5050 6484 9.405587 CCATTATGACACGTCAAACTTTTTAAT 57.594 29.630 3.61 0.00 43.58 1.40
5077 6511 5.833406 TTCACACATGCATGTAAATAGGG 57.167 39.130 30.92 19.55 39.39 3.53
5078 6512 5.109500 TCACACATGCATGTAAATAGGGA 57.891 39.130 30.92 21.48 39.39 4.20
5079 6513 4.881273 TCACACATGCATGTAAATAGGGAC 59.119 41.667 30.92 0.00 39.39 4.46
5080 6514 3.876914 ACACATGCATGTAAATAGGGACG 59.123 43.478 30.92 16.89 39.39 4.79
5081 6515 4.126437 CACATGCATGTAAATAGGGACGA 58.874 43.478 30.92 0.00 39.39 4.20
5082 6516 4.574421 CACATGCATGTAAATAGGGACGAA 59.426 41.667 30.92 0.00 39.39 3.85
5083 6517 5.065859 CACATGCATGTAAATAGGGACGAAA 59.934 40.000 30.92 0.00 39.39 3.46
5084 6518 5.650266 ACATGCATGTAAATAGGGACGAAAA 59.350 36.000 30.50 0.00 39.68 2.29
5085 6519 6.151985 ACATGCATGTAAATAGGGACGAAAAA 59.848 34.615 30.50 0.00 39.68 1.94
5086 6520 5.945155 TGCATGTAAATAGGGACGAAAAAC 58.055 37.500 0.00 0.00 0.00 2.43
5087 6521 5.473846 TGCATGTAAATAGGGACGAAAAACA 59.526 36.000 0.00 0.00 0.00 2.83
5088 6522 6.027749 GCATGTAAATAGGGACGAAAAACAG 58.972 40.000 0.00 0.00 0.00 3.16
5089 6523 6.128117 GCATGTAAATAGGGACGAAAAACAGA 60.128 38.462 0.00 0.00 0.00 3.41
5090 6524 7.415206 GCATGTAAATAGGGACGAAAAACAGAT 60.415 37.037 0.00 0.00 0.00 2.90
5091 6525 7.372451 TGTAAATAGGGACGAAAAACAGATG 57.628 36.000 0.00 0.00 0.00 2.90
5092 6526 7.162761 TGTAAATAGGGACGAAAAACAGATGA 58.837 34.615 0.00 0.00 0.00 2.92
5093 6527 7.827236 TGTAAATAGGGACGAAAAACAGATGAT 59.173 33.333 0.00 0.00 0.00 2.45
5094 6528 6.683974 AATAGGGACGAAAAACAGATGATG 57.316 37.500 0.00 0.00 0.00 3.07
5095 6529 4.021102 AGGGACGAAAAACAGATGATGT 57.979 40.909 0.00 0.00 46.97 3.06
5096 6530 4.003648 AGGGACGAAAAACAGATGATGTC 58.996 43.478 0.00 0.00 43.00 3.06
5097 6531 3.751175 GGGACGAAAAACAGATGATGTCA 59.249 43.478 0.00 0.00 43.00 3.58
5098 6532 4.142816 GGGACGAAAAACAGATGATGTCAG 60.143 45.833 0.00 0.00 43.00 3.51
5099 6533 4.398247 GACGAAAAACAGATGATGTCAGC 58.602 43.478 0.00 0.00 43.00 4.26
5100 6534 3.120546 ACGAAAAACAGATGATGTCAGCG 60.121 43.478 0.00 0.00 43.00 5.18
5101 6535 3.725895 CGAAAAACAGATGATGTCAGCGG 60.726 47.826 0.00 0.00 43.00 5.52
5102 6536 2.768253 AAACAGATGATGTCAGCGGA 57.232 45.000 5.47 0.00 43.00 5.54
5103 6537 2.768253 AACAGATGATGTCAGCGGAA 57.232 45.000 5.47 0.00 43.00 4.30
5104 6538 2.768253 ACAGATGATGTCAGCGGAAA 57.232 45.000 5.47 0.00 37.75 3.13
5105 6539 3.272574 ACAGATGATGTCAGCGGAAAT 57.727 42.857 5.47 0.00 37.75 2.17
5106 6540 3.201290 ACAGATGATGTCAGCGGAAATC 58.799 45.455 9.86 9.86 37.75 2.17
5107 6541 3.118482 ACAGATGATGTCAGCGGAAATCT 60.118 43.478 16.64 7.45 37.75 2.40
5108 6542 3.875727 CAGATGATGTCAGCGGAAATCTT 59.124 43.478 16.64 11.11 38.41 2.40
5109 6543 4.334759 CAGATGATGTCAGCGGAAATCTTT 59.665 41.667 16.64 5.82 38.41 2.52
5110 6544 4.946157 AGATGATGTCAGCGGAAATCTTTT 59.054 37.500 16.64 4.69 38.41 2.27
5111 6545 4.424061 TGATGTCAGCGGAAATCTTTTG 57.576 40.909 16.64 0.00 38.41 2.44
5112 6546 3.191162 TGATGTCAGCGGAAATCTTTTGG 59.809 43.478 16.64 0.00 38.41 3.28
5113 6547 1.885887 TGTCAGCGGAAATCTTTTGGG 59.114 47.619 0.00 0.00 0.00 4.12
5114 6548 1.886542 GTCAGCGGAAATCTTTTGGGT 59.113 47.619 0.00 0.00 0.00 4.51
5115 6549 2.296190 GTCAGCGGAAATCTTTTGGGTT 59.704 45.455 0.00 0.00 0.00 4.11
5116 6550 2.962421 TCAGCGGAAATCTTTTGGGTTT 59.038 40.909 0.00 0.00 0.00 3.27
5117 6551 3.386402 TCAGCGGAAATCTTTTGGGTTTT 59.614 39.130 0.00 0.00 0.00 2.43
5118 6552 3.740832 CAGCGGAAATCTTTTGGGTTTTC 59.259 43.478 0.00 0.00 0.00 2.29
5119 6553 3.386402 AGCGGAAATCTTTTGGGTTTTCA 59.614 39.130 0.00 0.00 31.29 2.69
5120 6554 4.123506 GCGGAAATCTTTTGGGTTTTCAA 58.876 39.130 0.00 0.00 31.29 2.69
5121 6555 4.572795 GCGGAAATCTTTTGGGTTTTCAAA 59.427 37.500 0.00 0.00 35.15 2.69
5122 6556 5.503357 GCGGAAATCTTTTGGGTTTTCAAAC 60.503 40.000 0.00 0.00 36.49 2.93
5123 6557 5.815222 CGGAAATCTTTTGGGTTTTCAAACT 59.185 36.000 2.55 0.00 38.89 2.66
5124 6558 6.315144 CGGAAATCTTTTGGGTTTTCAAACTT 59.685 34.615 2.55 0.00 38.89 2.66
5125 6559 7.148323 CGGAAATCTTTTGGGTTTTCAAACTTT 60.148 33.333 2.55 0.00 38.89 2.66
5126 6560 9.168451 GGAAATCTTTTGGGTTTTCAAACTTTA 57.832 29.630 2.55 0.00 38.89 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 5.359576 GGGGAGATTGTATTAACATGTTGCA 59.640 40.000 21.42 11.28 34.97 4.08
180 182 9.146586 AGCATGATCTCTCTAAAAGAAGATACT 57.853 33.333 0.00 0.00 32.23 2.12
313 315 9.807649 GTGATTCCAGCTGTATTCAATTTTTAT 57.192 29.630 13.81 0.00 0.00 1.40
329 331 1.514678 TTGTGTGCCGTGATTCCAGC 61.515 55.000 0.00 0.00 0.00 4.85
792 1460 0.376152 CAAGCATAACAGCGCAGAGG 59.624 55.000 11.47 0.00 40.15 3.69
819 1487 3.569701 GGGAAAGAGCAGATTTCACACAA 59.430 43.478 9.57 0.00 39.40 3.33
824 1492 4.581309 AGATGGGAAAGAGCAGATTTCA 57.419 40.909 9.57 0.00 38.21 2.69
909 1577 3.054802 ACAAGCAAGGAGGAATAGAGGTG 60.055 47.826 0.00 0.00 0.00 4.00
920 1588 1.471684 GCAGGATCAACAAGCAAGGAG 59.528 52.381 0.00 0.00 0.00 3.69
991 1659 0.395173 AACCTTCACCGCCACAAACT 60.395 50.000 0.00 0.00 0.00 2.66
1000 1672 1.196808 CAATTCCACGAACCTTCACCG 59.803 52.381 0.00 0.00 0.00 4.94
1042 1715 6.923199 AAGGATTCCAAAGATGAAATGTGT 57.077 33.333 5.29 0.00 0.00 3.72
1053 1726 4.584325 TGTGACAGGAAAAGGATTCCAAAG 59.416 41.667 5.29 2.30 41.00 2.77
1204 1880 0.386478 CTGAAGCAGACAAAAGCGGC 60.386 55.000 0.00 0.00 32.44 6.53
1449 2126 1.993956 ACACAGTGGCAATTAAGGCA 58.006 45.000 5.31 0.00 42.25 4.75
1508 2211 6.291377 TGATTTGGTATATTCAGTCAGAGCC 58.709 40.000 0.00 0.00 0.00 4.70
1611 2321 9.911788 ATATCCACAGATAAATGATGGGTTATC 57.088 33.333 0.00 0.00 38.47 1.75
1666 2376 5.178797 CCGAGTATTGTGGAAGATTCTTGT 58.821 41.667 3.03 0.00 0.00 3.16
1680 2393 2.681848 AGTGTCCGAGTACCGAGTATTG 59.318 50.000 5.46 0.00 41.76 1.90
1697 2410 9.046296 CAAGTTTACTCTACAATCTGAAAGTGT 57.954 33.333 0.00 0.00 33.76 3.55
1703 2416 7.095774 GCGTTTCAAGTTTACTCTACAATCTGA 60.096 37.037 0.00 0.00 0.00 3.27
1727 2440 5.034152 GTGTTATGATAACCACCAATTGCG 58.966 41.667 12.39 0.00 0.00 4.85
1845 2558 5.614324 TGTAGCTTCCTGTGCAAGTATAT 57.386 39.130 0.00 0.00 0.00 0.86
1872 2585 5.986135 GCGATGTCATAATCTACCTGTTTCT 59.014 40.000 0.00 0.00 0.00 2.52
1918 2631 6.332735 TGCGTATGTAAGCAATCTCTAGAT 57.667 37.500 0.00 0.00 40.78 1.98
2169 2894 3.560025 GGTTTCCTCACATCATGTCCTGT 60.560 47.826 0.00 0.00 0.00 4.00
2181 2906 5.301805 TGAATTTTCCAGAAGGTTTCCTCAC 59.698 40.000 0.00 0.00 35.89 3.51
2393 3499 2.476854 GCGTTCAATGCTAAGCTTCAGG 60.477 50.000 0.00 0.00 0.00 3.86
2920 4236 3.950397 AGGCGGTGATATCTTTGAAACA 58.050 40.909 3.98 0.00 0.00 2.83
2921 4237 4.394920 TGAAGGCGGTGATATCTTTGAAAC 59.605 41.667 3.98 0.00 0.00 2.78
3007 4329 4.019174 ACCATTGTTCAGATTCACATCCC 58.981 43.478 0.00 0.00 0.00 3.85
3109 4431 6.202516 TGGTGATTTTCTTCGTCAAGTTTT 57.797 33.333 0.00 0.00 0.00 2.43
3157 4479 1.303309 GGAATGCCCATTCTCACGAG 58.697 55.000 17.63 0.00 44.90 4.18
3202 4524 3.402628 TTCTTGTGCTACCTCCTGAAC 57.597 47.619 0.00 0.00 0.00 3.18
3447 4769 0.468226 TGAGGAACAGTGTCGCCTTT 59.532 50.000 16.28 0.00 0.00 3.11
3494 4816 3.411415 GCTGCAGCAGTTATAACAAGG 57.589 47.619 33.36 7.79 41.59 3.61
3606 4928 0.409876 TAGACCACTGTGCTCTCCCT 59.590 55.000 8.81 0.00 0.00 4.20
3644 4966 5.578336 TCAAAGCTTCAGAGTCGTATCAATG 59.422 40.000 0.00 0.00 0.00 2.82
3645 4967 5.578727 GTCAAAGCTTCAGAGTCGTATCAAT 59.421 40.000 0.00 0.00 0.00 2.57
3670 4992 3.951775 TTGGTTTTGAACAGTTGCAGT 57.048 38.095 0.00 0.00 0.00 4.40
3683 5005 6.072728 GCTTTTTGGAAACAGTCTTTGGTTTT 60.073 34.615 0.00 0.00 44.54 2.43
3698 5020 4.148128 TGCTTGAATTGGCTTTTTGGAA 57.852 36.364 0.00 0.00 0.00 3.53
3703 5028 5.343249 GTCGATATGCTTGAATTGGCTTTT 58.657 37.500 0.00 0.00 0.00 2.27
3722 5047 0.888619 ATGTCTTCTTGAGGCGTCGA 59.111 50.000 0.00 0.00 30.55 4.20
3727 5052 3.269178 CTTCTGGATGTCTTCTTGAGGC 58.731 50.000 0.00 0.00 0.00 4.70
3786 5111 5.216614 GGAGTAGTAGATTCCCATCAACC 57.783 47.826 0.00 0.00 0.00 3.77
3845 5170 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
3846 5171 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
3847 5172 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3848 5173 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
3849 5174 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
3850 5175 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
3851 5176 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
3852 5177 4.994852 TGAGACAAGTAATTTGGAACGGAG 59.005 41.667 0.00 0.00 41.25 4.63
3853 5178 4.963373 TGAGACAAGTAATTTGGAACGGA 58.037 39.130 0.00 0.00 41.25 4.69
3854 5179 5.682943 TTGAGACAAGTAATTTGGAACGG 57.317 39.130 0.00 0.00 41.25 4.44
3855 5180 7.165812 CACTTTTGAGACAAGTAATTTGGAACG 59.834 37.037 0.00 0.00 41.25 3.95
3856 5181 7.435192 CCACTTTTGAGACAAGTAATTTGGAAC 59.565 37.037 0.00 0.00 41.25 3.62
3857 5182 7.340743 TCCACTTTTGAGACAAGTAATTTGGAA 59.659 33.333 0.00 0.00 41.25 3.53
3858 5183 6.831353 TCCACTTTTGAGACAAGTAATTTGGA 59.169 34.615 0.00 0.00 41.25 3.53
3859 5184 7.038154 TCCACTTTTGAGACAAGTAATTTGG 57.962 36.000 0.00 0.00 41.25 3.28
3866 5191 8.143835 CCATTTTTATCCACTTTTGAGACAAGT 58.856 33.333 0.00 0.00 34.67 3.16
3867 5192 8.359642 TCCATTTTTATCCACTTTTGAGACAAG 58.640 33.333 0.00 0.00 0.00 3.16
3868 5193 8.243961 TCCATTTTTATCCACTTTTGAGACAA 57.756 30.769 0.00 0.00 0.00 3.18
3869 5194 7.831691 TCCATTTTTATCCACTTTTGAGACA 57.168 32.000 0.00 0.00 0.00 3.41
3870 5195 8.306761 ACATCCATTTTTATCCACTTTTGAGAC 58.693 33.333 0.00 0.00 0.00 3.36
3871 5196 8.421249 ACATCCATTTTTATCCACTTTTGAGA 57.579 30.769 0.00 0.00 0.00 3.27
3901 5226 9.962783 GGATGTATCTAGACGTATTTTAGTTGT 57.037 33.333 0.00 0.00 0.00 3.32
3902 5227 9.961265 TGGATGTATCTAGACGTATTTTAGTTG 57.039 33.333 0.00 0.00 0.00 3.16
3908 5233 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
3909 5234 8.861086 ACAGAAATGGATGTATCTAGACGTATT 58.139 33.333 0.00 0.00 0.00 1.89
3910 5235 8.300286 CACAGAAATGGATGTATCTAGACGTAT 58.700 37.037 0.00 0.00 0.00 3.06
3911 5236 7.501225 TCACAGAAATGGATGTATCTAGACGTA 59.499 37.037 0.00 0.00 0.00 3.57
3912 5237 6.321435 TCACAGAAATGGATGTATCTAGACGT 59.679 38.462 0.00 0.00 0.00 4.34
3913 5238 6.638873 GTCACAGAAATGGATGTATCTAGACG 59.361 42.308 0.00 0.00 0.00 4.18
3914 5239 7.492524 TGTCACAGAAATGGATGTATCTAGAC 58.507 38.462 0.00 0.00 31.82 2.59
3915 5240 7.660030 TGTCACAGAAATGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
3916 5241 8.899427 ATTGTCACAGAAATGGATGTATCTAG 57.101 34.615 0.00 0.00 0.00 2.43
3918 5243 9.685276 TTAATTGTCACAGAAATGGATGTATCT 57.315 29.630 0.00 0.00 0.00 1.98
3922 5247 8.253113 GGAATTAATTGTCACAGAAATGGATGT 58.747 33.333 5.17 0.00 0.00 3.06
3923 5248 7.707893 GGGAATTAATTGTCACAGAAATGGATG 59.292 37.037 5.17 0.00 0.00 3.51
3924 5249 7.399765 TGGGAATTAATTGTCACAGAAATGGAT 59.600 33.333 5.17 0.00 0.00 3.41
3925 5250 6.723515 TGGGAATTAATTGTCACAGAAATGGA 59.276 34.615 5.17 0.00 0.00 3.41
3926 5251 6.934056 TGGGAATTAATTGTCACAGAAATGG 58.066 36.000 5.17 0.00 0.00 3.16
3927 5252 7.062138 CGTTGGGAATTAATTGTCACAGAAATG 59.938 37.037 5.17 0.00 0.00 2.32
3928 5253 7.090173 CGTTGGGAATTAATTGTCACAGAAAT 58.910 34.615 5.17 0.00 0.00 2.17
3929 5254 6.442952 CGTTGGGAATTAATTGTCACAGAAA 58.557 36.000 5.17 0.00 0.00 2.52
3930 5255 5.048364 CCGTTGGGAATTAATTGTCACAGAA 60.048 40.000 5.17 0.00 34.06 3.02
3931 5256 4.457603 CCGTTGGGAATTAATTGTCACAGA 59.542 41.667 5.17 0.00 34.06 3.41
3932 5257 4.457603 TCCGTTGGGAATTAATTGTCACAG 59.542 41.667 5.17 1.15 40.15 3.66
3933 5258 4.399219 TCCGTTGGGAATTAATTGTCACA 58.601 39.130 5.17 0.00 40.15 3.58
3934 5259 4.142469 CCTCCGTTGGGAATTAATTGTCAC 60.142 45.833 5.17 0.00 43.27 3.67
3935 5260 4.013728 CCTCCGTTGGGAATTAATTGTCA 58.986 43.478 5.17 0.86 43.27 3.58
3936 5261 4.632538 CCTCCGTTGGGAATTAATTGTC 57.367 45.455 5.17 0.00 43.27 3.18
3948 5273 3.449737 TGATTTAGTACTCCCTCCGTTGG 59.550 47.826 0.00 0.00 0.00 3.77
3949 5274 4.683832 CTGATTTAGTACTCCCTCCGTTG 58.316 47.826 0.00 0.00 0.00 4.10
3950 5275 3.132467 GCTGATTTAGTACTCCCTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
3951 5276 2.694109 GCTGATTTAGTACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
3952 5277 2.287668 CGCTGATTTAGTACTCCCTCCG 60.288 54.545 0.00 0.00 0.00 4.63
3953 5278 2.957006 TCGCTGATTTAGTACTCCCTCC 59.043 50.000 0.00 0.00 0.00 4.30
3954 5279 3.380637 TGTCGCTGATTTAGTACTCCCTC 59.619 47.826 0.00 0.00 0.00 4.30
3955 5280 3.362706 TGTCGCTGATTTAGTACTCCCT 58.637 45.455 0.00 0.00 0.00 4.20
3956 5281 3.795623 TGTCGCTGATTTAGTACTCCC 57.204 47.619 0.00 0.00 0.00 4.30
3957 5282 7.766219 TTAATTGTCGCTGATTTAGTACTCC 57.234 36.000 0.00 0.00 0.00 3.85
4038 5364 4.524053 TCTAGAGACCGCAATAGAGTTGA 58.476 43.478 0.00 0.00 0.00 3.18
4053 5379 2.094700 ACGATGCTTGCGTTTCTAGAGA 60.095 45.455 0.00 0.00 39.18 3.10
4068 5394 4.483476 ACAAAGGTAACAAGAACGATGC 57.517 40.909 0.00 0.00 41.41 3.91
4161 5487 3.112263 AGATAAATGGAACCACCGGAGA 58.888 45.455 9.46 0.00 42.61 3.71
4165 5491 3.206150 CAGGAGATAAATGGAACCACCG 58.794 50.000 0.00 0.00 42.61 4.94
4206 5532 5.861251 TCAAAACATAAAATCACATCACGCC 59.139 36.000 0.00 0.00 0.00 5.68
4219 5545 6.096141 TGTTCTCCAGCAACTCAAAACATAAA 59.904 34.615 0.00 0.00 0.00 1.40
4363 5689 2.371658 AAACAGAAAGCCTTGGCTCT 57.628 45.000 15.10 0.00 0.00 4.09
4403 5729 2.995466 TCTCAAAATTGCTCAAGCGG 57.005 45.000 0.00 0.00 45.83 5.52
4405 5731 7.081526 TCTTCTATCTCAAAATTGCTCAAGC 57.918 36.000 0.00 0.00 42.50 4.01
4437 5794 4.436050 CCTGCTTGAAATACTGCACTTACG 60.436 45.833 0.00 0.00 0.00 3.18
4570 5997 4.227527 AGAATTTTGGGACGAAGGGAGTAT 59.772 41.667 0.00 0.00 0.00 2.12
4571 5998 3.585732 AGAATTTTGGGACGAAGGGAGTA 59.414 43.478 0.00 0.00 0.00 2.59
4572 5999 2.375509 AGAATTTTGGGACGAAGGGAGT 59.624 45.455 0.00 0.00 0.00 3.85
4573 6000 3.073274 AGAATTTTGGGACGAAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
4574 6001 3.153919 CAAGAATTTTGGGACGAAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
4575 6002 2.890945 ACAAGAATTTTGGGACGAAGGG 59.109 45.455 0.00 0.00 0.00 3.95
4576 6003 3.821033 AGACAAGAATTTTGGGACGAAGG 59.179 43.478 0.00 0.00 0.00 3.46
4577 6004 5.438761 AAGACAAGAATTTTGGGACGAAG 57.561 39.130 0.00 0.00 0.00 3.79
4578 6005 6.292923 TCTAAGACAAGAATTTTGGGACGAA 58.707 36.000 0.00 0.00 0.00 3.85
4579 6006 5.860611 TCTAAGACAAGAATTTTGGGACGA 58.139 37.500 0.00 0.00 0.00 4.20
4580 6007 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4581 6008 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4582 6009 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4583 6010 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
4591 6018 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
4592 6019 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
4594 6021 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
4595 6022 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
4602 6029 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
4603 6030 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
4604 6031 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
4605 6032 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
4606 6033 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
4607 6034 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
4608 6035 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
4609 6036 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
4610 6037 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
4611 6038 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
4612 6039 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
4613 6040 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
4614 6041 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
4615 6042 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
4616 6043 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
4626 6053 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
4627 6054 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
4628 6055 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
4629 6056 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
4647 6074 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
4648 6075 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
4650 6077 9.932207 TTTGTCTTAAATTTGTCTAGATACGGA 57.068 29.630 0.00 0.00 0.00 4.69
4662 6089 9.432077 CGTCCCAAAATTTTTGTCTTAAATTTG 57.568 29.630 18.05 2.04 41.71 2.32
4663 6090 8.616942 CCGTCCCAAAATTTTTGTCTTAAATTT 58.383 29.630 18.05 0.00 43.39 1.82
4664 6091 7.988028 TCCGTCCCAAAATTTTTGTCTTAAATT 59.012 29.630 18.05 0.00 36.91 1.82
4665 6092 7.501844 TCCGTCCCAAAATTTTTGTCTTAAAT 58.498 30.769 18.05 0.00 0.00 1.40
4666 6093 6.875076 TCCGTCCCAAAATTTTTGTCTTAAA 58.125 32.000 18.05 0.69 0.00 1.52
4667 6094 6.466885 TCCGTCCCAAAATTTTTGTCTTAA 57.533 33.333 18.05 0.26 0.00 1.85
4668 6095 6.461788 CCTTCCGTCCCAAAATTTTTGTCTTA 60.462 38.462 18.05 1.26 0.00 2.10
4669 6096 5.346181 TTCCGTCCCAAAATTTTTGTCTT 57.654 34.783 18.05 0.00 0.00 3.01
4670 6097 4.202212 CCTTCCGTCCCAAAATTTTTGTCT 60.202 41.667 18.05 0.00 0.00 3.41
4671 6098 4.055360 CCTTCCGTCCCAAAATTTTTGTC 58.945 43.478 18.05 9.04 0.00 3.18
4672 6099 3.707102 TCCTTCCGTCCCAAAATTTTTGT 59.293 39.130 18.05 0.00 0.00 2.83
4673 6100 4.202212 ACTCCTTCCGTCCCAAAATTTTTG 60.202 41.667 13.76 13.76 0.00 2.44
4674 6101 3.964688 ACTCCTTCCGTCCCAAAATTTTT 59.035 39.130 0.00 0.00 0.00 1.94
4675 6102 3.572642 ACTCCTTCCGTCCCAAAATTTT 58.427 40.909 0.00 0.00 0.00 1.82
4676 6103 3.238788 ACTCCTTCCGTCCCAAAATTT 57.761 42.857 0.00 0.00 0.00 1.82
4677 6104 2.971901 ACTCCTTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4678 6105 2.026542 GGTACTCCTTCCGTCCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
4679 6106 1.348696 GGTACTCCTTCCGTCCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
4680 6107 0.978907 GGTACTCCTTCCGTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
4681 6108 0.115745 AGGTACTCCTTCCGTCCCAA 59.884 55.000 0.00 0.00 42.12 4.12
4682 6109 1.778981 AGGTACTCCTTCCGTCCCA 59.221 57.895 0.00 0.00 42.12 4.37
4683 6110 4.781264 AGGTACTCCTTCCGTCCC 57.219 61.111 0.00 0.00 42.12 4.46
4692 6119 7.752686 CGTTTAGTCTAGTTTGTAAGGTACTCC 59.247 40.741 0.00 0.00 38.49 3.85
4693 6120 8.507249 TCGTTTAGTCTAGTTTGTAAGGTACTC 58.493 37.037 0.00 0.00 38.49 2.59
4695 6122 9.463443 TTTCGTTTAGTCTAGTTTGTAAGGTAC 57.537 33.333 0.00 0.00 0.00 3.34
4696 6123 9.463443 GTTTCGTTTAGTCTAGTTTGTAAGGTA 57.537 33.333 0.00 0.00 0.00 3.08
4728 6155 4.393990 ACCTTAACCGGTGATTTTCGAATC 59.606 41.667 8.52 0.00 35.52 2.52
4801 6230 5.065218 ACGTAATTCTAGGCAGATGCAAAAG 59.935 40.000 7.19 0.96 44.36 2.27
4806 6235 3.983741 AGACGTAATTCTAGGCAGATGC 58.016 45.455 0.00 0.00 41.14 3.91
4813 6242 4.571372 GTCCTGGAGACGTAATTCTAGG 57.429 50.000 15.98 15.98 41.84 3.02
4824 6253 6.935208 GGTTTTGTATATATGGTCCTGGAGAC 59.065 42.308 0.00 0.00 45.51 3.36
4878 6307 2.674747 GCATCTAGATCTAGCAGCAGCC 60.675 54.545 27.37 10.78 43.56 4.85
4921 6350 2.681848 GCATGCAGAGCACAAGTCTAAT 59.318 45.455 14.21 0.00 43.04 1.73
4922 6351 2.079158 GCATGCAGAGCACAAGTCTAA 58.921 47.619 14.21 0.00 43.04 2.10
4923 6352 1.002315 TGCATGCAGAGCACAAGTCTA 59.998 47.619 18.46 0.00 43.04 2.59
4924 6353 0.250597 TGCATGCAGAGCACAAGTCT 60.251 50.000 18.46 0.00 43.04 3.24
4925 6354 0.168348 CTGCATGCAGAGCACAAGTC 59.832 55.000 38.90 0.00 46.30 3.01
4926 6355 1.863662 GCTGCATGCAGAGCACAAGT 61.864 55.000 44.02 0.00 46.30 3.16
4927 6356 1.154016 GCTGCATGCAGAGCACAAG 60.154 57.895 44.02 21.49 46.30 3.16
4959 6393 7.172190 AGTCATGTCATTAGAGTTGAACACTTG 59.828 37.037 0.00 0.00 35.01 3.16
4992 6426 4.021925 GTGTGGCCCGAGCTCCTT 62.022 66.667 8.47 0.00 39.73 3.36
4995 6429 3.941657 GAGTGTGTGGCCCGAGCTC 62.942 68.421 2.73 2.73 39.73 4.09
4996 6430 4.008933 GAGTGTGTGGCCCGAGCT 62.009 66.667 0.00 0.00 39.73 4.09
4997 6431 3.537206 AAGAGTGTGTGGCCCGAGC 62.537 63.158 0.00 0.00 38.76 5.03
4998 6432 1.374758 GAAGAGTGTGTGGCCCGAG 60.375 63.158 0.00 0.00 0.00 4.63
4999 6433 0.541063 TAGAAGAGTGTGTGGCCCGA 60.541 55.000 0.00 0.00 0.00 5.14
5000 6434 0.320374 TTAGAAGAGTGTGTGGCCCG 59.680 55.000 0.00 0.00 0.00 6.13
5001 6435 1.610886 GGTTAGAAGAGTGTGTGGCCC 60.611 57.143 0.00 0.00 0.00 5.80
5002 6436 1.071699 TGGTTAGAAGAGTGTGTGGCC 59.928 52.381 0.00 0.00 0.00 5.36
5003 6437 2.543777 TGGTTAGAAGAGTGTGTGGC 57.456 50.000 0.00 0.00 0.00 5.01
5004 6438 3.007940 TGGATGGTTAGAAGAGTGTGTGG 59.992 47.826 0.00 0.00 0.00 4.17
5005 6439 4.271696 TGGATGGTTAGAAGAGTGTGTG 57.728 45.455 0.00 0.00 0.00 3.82
5006 6440 5.505181 AATGGATGGTTAGAAGAGTGTGT 57.495 39.130 0.00 0.00 0.00 3.72
5007 6441 7.225538 GTCATAATGGATGGTTAGAAGAGTGTG 59.774 40.741 0.00 0.00 36.08 3.82
5008 6442 7.092891 TGTCATAATGGATGGTTAGAAGAGTGT 60.093 37.037 0.00 0.00 36.08 3.55
5009 6443 7.225538 GTGTCATAATGGATGGTTAGAAGAGTG 59.774 40.741 0.00 0.00 36.08 3.51
5010 6444 7.275920 GTGTCATAATGGATGGTTAGAAGAGT 58.724 38.462 0.00 0.00 36.08 3.24
5011 6445 6.422100 CGTGTCATAATGGATGGTTAGAAGAG 59.578 42.308 0.00 0.00 36.08 2.85
5012 6446 6.127168 ACGTGTCATAATGGATGGTTAGAAGA 60.127 38.462 0.00 0.00 36.08 2.87
5013 6447 6.049149 ACGTGTCATAATGGATGGTTAGAAG 58.951 40.000 0.00 0.00 36.08 2.85
5014 6448 5.984725 ACGTGTCATAATGGATGGTTAGAA 58.015 37.500 0.00 0.00 36.08 2.10
5015 6449 5.128008 TGACGTGTCATAATGGATGGTTAGA 59.872 40.000 0.00 0.00 36.08 2.10
5016 6450 5.356426 TGACGTGTCATAATGGATGGTTAG 58.644 41.667 0.00 0.00 36.08 2.34
5017 6451 5.346181 TGACGTGTCATAATGGATGGTTA 57.654 39.130 0.00 0.00 36.08 2.85
5018 6452 4.214986 TGACGTGTCATAATGGATGGTT 57.785 40.909 0.00 0.00 36.08 3.67
5019 6453 3.904800 TGACGTGTCATAATGGATGGT 57.095 42.857 0.00 0.00 36.08 3.55
5020 6454 4.635765 AGTTTGACGTGTCATAATGGATGG 59.364 41.667 3.14 0.00 39.64 3.51
5021 6455 5.801350 AGTTTGACGTGTCATAATGGATG 57.199 39.130 3.14 0.00 39.64 3.51
5022 6456 6.817765 AAAGTTTGACGTGTCATAATGGAT 57.182 33.333 3.14 0.00 39.64 3.41
5023 6457 6.627395 AAAAGTTTGACGTGTCATAATGGA 57.373 33.333 3.14 0.00 39.64 3.41
5024 6458 8.789881 TTAAAAAGTTTGACGTGTCATAATGG 57.210 30.769 3.14 0.00 39.64 3.16
5052 6486 7.039434 TCCCTATTTACATGCATGTGTGAAAAA 60.039 33.333 36.72 28.19 41.89 1.94
5053 6487 6.435591 TCCCTATTTACATGCATGTGTGAAAA 59.564 34.615 36.72 28.51 41.89 2.29
5054 6488 5.948758 TCCCTATTTACATGCATGTGTGAAA 59.051 36.000 36.72 28.82 41.89 2.69
5055 6489 5.356751 GTCCCTATTTACATGCATGTGTGAA 59.643 40.000 36.72 27.39 41.89 3.18
5056 6490 4.881273 GTCCCTATTTACATGCATGTGTGA 59.119 41.667 36.72 23.65 41.89 3.58
5057 6491 4.260743 CGTCCCTATTTACATGCATGTGTG 60.261 45.833 36.72 21.83 41.89 3.82
5058 6492 3.876914 CGTCCCTATTTACATGCATGTGT 59.123 43.478 36.72 25.04 41.89 3.72
5059 6493 4.126437 TCGTCCCTATTTACATGCATGTG 58.874 43.478 36.72 21.86 41.89 3.21
5060 6494 4.415881 TCGTCCCTATTTACATGCATGT 57.584 40.909 33.20 33.20 44.48 3.21
5061 6495 5.749596 TTTCGTCCCTATTTACATGCATG 57.250 39.130 25.09 25.09 0.00 4.06
5062 6496 6.151985 TGTTTTTCGTCCCTATTTACATGCAT 59.848 34.615 0.00 0.00 0.00 3.96
5063 6497 5.473846 TGTTTTTCGTCCCTATTTACATGCA 59.526 36.000 0.00 0.00 0.00 3.96
5064 6498 5.945155 TGTTTTTCGTCCCTATTTACATGC 58.055 37.500 0.00 0.00 0.00 4.06
5065 6499 7.372451 TCTGTTTTTCGTCCCTATTTACATG 57.628 36.000 0.00 0.00 0.00 3.21
5066 6500 7.827236 TCATCTGTTTTTCGTCCCTATTTACAT 59.173 33.333 0.00 0.00 0.00 2.29
5067 6501 7.162761 TCATCTGTTTTTCGTCCCTATTTACA 58.837 34.615 0.00 0.00 0.00 2.41
5068 6502 7.605410 TCATCTGTTTTTCGTCCCTATTTAC 57.395 36.000 0.00 0.00 0.00 2.01
5069 6503 7.827236 ACATCATCTGTTTTTCGTCCCTATTTA 59.173 33.333 0.00 0.00 32.90 1.40
5070 6504 6.659242 ACATCATCTGTTTTTCGTCCCTATTT 59.341 34.615 0.00 0.00 32.90 1.40
5071 6505 6.180472 ACATCATCTGTTTTTCGTCCCTATT 58.820 36.000 0.00 0.00 32.90 1.73
5072 6506 5.745227 ACATCATCTGTTTTTCGTCCCTAT 58.255 37.500 0.00 0.00 32.90 2.57
5073 6507 5.160607 ACATCATCTGTTTTTCGTCCCTA 57.839 39.130 0.00 0.00 32.90 3.53
5074 6508 4.003648 GACATCATCTGTTTTTCGTCCCT 58.996 43.478 0.00 0.00 38.54 4.20
5075 6509 3.751175 TGACATCATCTGTTTTTCGTCCC 59.249 43.478 0.00 0.00 38.54 4.46
5076 6510 4.670221 GCTGACATCATCTGTTTTTCGTCC 60.670 45.833 0.00 0.00 38.54 4.79
5077 6511 4.398247 GCTGACATCATCTGTTTTTCGTC 58.602 43.478 0.00 0.00 38.54 4.20
5078 6512 3.120546 CGCTGACATCATCTGTTTTTCGT 60.121 43.478 0.00 0.00 38.54 3.85
5079 6513 3.410850 CGCTGACATCATCTGTTTTTCG 58.589 45.455 0.00 0.00 38.54 3.46
5080 6514 3.436704 TCCGCTGACATCATCTGTTTTTC 59.563 43.478 0.00 0.00 38.54 2.29
5081 6515 3.411446 TCCGCTGACATCATCTGTTTTT 58.589 40.909 0.00 0.00 38.54 1.94
5082 6516 3.057969 TCCGCTGACATCATCTGTTTT 57.942 42.857 0.00 0.00 38.54 2.43
5083 6517 2.768253 TCCGCTGACATCATCTGTTT 57.232 45.000 0.00 0.00 38.54 2.83
5084 6518 2.768253 TTCCGCTGACATCATCTGTT 57.232 45.000 0.00 0.00 38.54 3.16
5085 6519 2.768253 TTTCCGCTGACATCATCTGT 57.232 45.000 0.00 0.00 42.15 3.41
5086 6520 3.464907 AGATTTCCGCTGACATCATCTG 58.535 45.455 6.98 0.00 31.38 2.90
5087 6521 3.834489 AGATTTCCGCTGACATCATCT 57.166 42.857 6.98 0.00 31.38 2.90
5088 6522 4.889832 AAAGATTTCCGCTGACATCATC 57.110 40.909 6.98 0.00 31.38 2.92
5089 6523 4.142315 CCAAAAGATTTCCGCTGACATCAT 60.142 41.667 6.98 0.00 31.38 2.45
5090 6524 3.191162 CCAAAAGATTTCCGCTGACATCA 59.809 43.478 6.98 0.00 31.38 3.07
5091 6525 3.428045 CCCAAAAGATTTCCGCTGACATC 60.428 47.826 0.00 0.00 0.00 3.06
5092 6526 2.493278 CCCAAAAGATTTCCGCTGACAT 59.507 45.455 0.00 0.00 0.00 3.06
5093 6527 1.885887 CCCAAAAGATTTCCGCTGACA 59.114 47.619 0.00 0.00 0.00 3.58
5094 6528 1.886542 ACCCAAAAGATTTCCGCTGAC 59.113 47.619 0.00 0.00 0.00 3.51
5095 6529 2.286365 ACCCAAAAGATTTCCGCTGA 57.714 45.000 0.00 0.00 0.00 4.26
5096 6530 3.385193 AAACCCAAAAGATTTCCGCTG 57.615 42.857 0.00 0.00 0.00 5.18
5097 6531 3.386402 TGAAAACCCAAAAGATTTCCGCT 59.614 39.130 0.00 0.00 32.21 5.52
5098 6532 3.723260 TGAAAACCCAAAAGATTTCCGC 58.277 40.909 0.00 0.00 32.21 5.54
5099 6533 5.815222 AGTTTGAAAACCCAAAAGATTTCCG 59.185 36.000 2.34 0.00 39.71 4.30
5100 6534 7.624360 AAGTTTGAAAACCCAAAAGATTTCC 57.376 32.000 2.34 0.00 39.71 3.13



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.