Multiple sequence alignment - TraesCS5A01G355600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G355600 chr5A 100.000 3743 0 0 1 3743 558177752 558174010 0.000000e+00 6913.0
1 TraesCS5A01G355600 chr5D 91.422 2553 128 34 626 3109 441406440 441403910 0.000000e+00 3417.0
2 TraesCS5A01G355600 chr5D 90.000 510 42 6 1 507 441407389 441406886 0.000000e+00 651.0
3 TraesCS5A01G355600 chr5D 91.611 298 19 4 3430 3726 441403912 441403620 1.250000e-109 407.0
4 TraesCS5A01G355600 chr5B 93.327 2218 103 18 796 2986 537785512 537783313 0.000000e+00 3234.0
5 TraesCS5A01G355600 chr5B 95.758 330 14 0 3104 3433 44770998 44771327 1.980000e-147 532.0
6 TraesCS5A01G355600 chr5B 95.092 326 16 0 3105 3430 478698819 478699144 7.170000e-142 514.0
7 TraesCS5A01G355600 chr5B 89.389 311 28 4 95 404 537812380 537812074 1.630000e-103 387.0
8 TraesCS5A01G355600 chr5B 87.584 298 26 6 3430 3726 537783221 537782934 5.990000e-88 335.0
9 TraesCS5A01G355600 chr5B 88.722 133 12 2 405 536 537811106 537810976 3.870000e-35 159.0
10 TraesCS5A01G355600 chr5B 86.395 147 3 7 642 776 537785717 537785576 1.080000e-30 145.0
11 TraesCS5A01G355600 chr1D 87.616 1405 113 23 1518 2918 239622540 239621193 0.000000e+00 1574.0
12 TraesCS5A01G355600 chr1D 86.015 665 58 14 2257 2918 212525835 212526467 0.000000e+00 680.0
13 TraesCS5A01G355600 chr1D 82.653 98 17 0 1359 1456 416627316 416627219 1.850000e-13 87.9
14 TraesCS5A01G355600 chr4B 87.661 1394 116 23 1529 2918 339264339 339262998 0.000000e+00 1570.0
15 TraesCS5A01G355600 chr4B 94.801 327 17 0 3106 3432 396519930 396519604 9.270000e-141 510.0
16 TraesCS5A01G355600 chr2D 87.260 1405 113 21 1518 2918 118533046 118534388 0.000000e+00 1543.0
17 TraesCS5A01G355600 chr4D 87.117 1405 121 22 1518 2918 93450126 93448778 0.000000e+00 1537.0
18 TraesCS5A01G355600 chr3B 88.437 1081 89 15 1518 2595 809806222 809807269 0.000000e+00 1271.0
19 TraesCS5A01G355600 chr3B 98.494 332 4 1 3106 3436 369098420 369098089 5.390000e-163 584.0
20 TraesCS5A01G355600 chr3B 95.427 328 15 0 3109 3436 344956721 344956394 1.190000e-144 523.0
21 TraesCS5A01G355600 chr3A 88.197 1076 95 10 1591 2666 431134968 431136011 0.000000e+00 1254.0
22 TraesCS5A01G355600 chr3A 82.063 223 18 10 2700 2919 431136012 431136215 1.790000e-38 171.0
23 TraesCS5A01G355600 chr7B 95.988 324 11 2 3106 3428 118639763 118640085 3.310000e-145 525.0
24 TraesCS5A01G355600 chr7B 95.137 329 15 1 3102 3430 116522766 116523093 5.540000e-143 518.0
25 TraesCS5A01G355600 chr2B 94.910 334 15 2 3106 3438 789530264 789529932 4.280000e-144 521.0
26 TraesCS5A01G355600 chr6A 94.260 331 19 0 3100 3430 474328736 474329066 1.200000e-139 507.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G355600 chr5A 558174010 558177752 3742 True 6913.000000 6913 100.0000 1 3743 1 chr5A.!!$R1 3742
1 TraesCS5A01G355600 chr5D 441403620 441407389 3769 True 1491.666667 3417 91.0110 1 3726 3 chr5D.!!$R1 3725
2 TraesCS5A01G355600 chr5B 537782934 537785717 2783 True 1238.000000 3234 89.1020 642 3726 3 chr5B.!!$R1 3084
3 TraesCS5A01G355600 chr5B 537810976 537812380 1404 True 273.000000 387 89.0555 95 536 2 chr5B.!!$R2 441
4 TraesCS5A01G355600 chr1D 239621193 239622540 1347 True 1574.000000 1574 87.6160 1518 2918 1 chr1D.!!$R1 1400
5 TraesCS5A01G355600 chr1D 212525835 212526467 632 False 680.000000 680 86.0150 2257 2918 1 chr1D.!!$F1 661
6 TraesCS5A01G355600 chr4B 339262998 339264339 1341 True 1570.000000 1570 87.6610 1529 2918 1 chr4B.!!$R1 1389
7 TraesCS5A01G355600 chr2D 118533046 118534388 1342 False 1543.000000 1543 87.2600 1518 2918 1 chr2D.!!$F1 1400
8 TraesCS5A01G355600 chr4D 93448778 93450126 1348 True 1537.000000 1537 87.1170 1518 2918 1 chr4D.!!$R1 1400
9 TraesCS5A01G355600 chr3B 809806222 809807269 1047 False 1271.000000 1271 88.4370 1518 2595 1 chr3B.!!$F1 1077
10 TraesCS5A01G355600 chr3A 431134968 431136215 1247 False 712.500000 1254 85.1300 1591 2919 2 chr3A.!!$F1 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.391130 TCTTCGAAGTTGGATGGCGG 60.391 55.0 23.85 0.0 0.0 6.13 F
1687 2129 0.392595 CCCGCTCAAAGGTAGGTTCC 60.393 60.0 0.00 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2468 0.389948 AATCGGTGTCCTCGTTCAGC 60.390 55.0 0.0 0.0 0.00 4.26 R
3145 3880 0.035317 TCCGATCCTACATGGCATGC 59.965 55.0 26.7 9.9 35.26 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.973843 TGACAATGAGAAGTGAAAAATGAGG 58.026 36.000 0.00 0.00 0.00 3.86
26 27 6.974965 ACAATGAGAAGTGAAAAATGAGGAC 58.025 36.000 0.00 0.00 0.00 3.85
27 28 6.015940 ACAATGAGAAGTGAAAAATGAGGACC 60.016 38.462 0.00 0.00 0.00 4.46
78 79 2.238395 AGGCCATGGAACTCTTCTCTTC 59.762 50.000 18.40 0.00 0.00 2.87
93 94 0.391130 TCTTCGAAGTTGGATGGCGG 60.391 55.000 23.85 0.00 0.00 6.13
109 110 1.508088 CGGCAAGGAAGTTGATGGC 59.492 57.895 0.00 0.00 38.60 4.40
134 135 2.043801 GGAGAGGATAGGAGGCCTACAT 59.956 54.545 19.90 8.80 39.10 2.29
147 148 3.177228 GGCCTACATATCCCACTCTGAT 58.823 50.000 0.00 0.00 0.00 2.90
164 165 1.033574 GATGTCTAGAGTGGGACGGG 58.966 60.000 0.00 0.00 35.45 5.28
166 167 1.380112 GTCTAGAGTGGGACGGGCT 60.380 63.158 0.00 0.00 0.00 5.19
197 198 4.568760 GGGTCGAAGAAGATGATCAGAAAC 59.431 45.833 0.09 0.00 39.69 2.78
299 301 8.546597 TCATGAAAAGTTGAAGACATATCGAA 57.453 30.769 0.00 0.00 0.00 3.71
304 306 4.688021 AGTTGAAGACATATCGAAGAGGC 58.312 43.478 0.00 0.00 43.63 4.70
318 320 6.716934 TCGAAGAGGCTACAATAGAAGAAT 57.283 37.500 0.00 0.00 0.00 2.40
319 321 6.507900 TCGAAGAGGCTACAATAGAAGAATG 58.492 40.000 0.00 0.00 0.00 2.67
385 387 6.097439 AGAGATGGAGGTGCATATATCCTA 57.903 41.667 9.83 0.12 32.79 2.94
411 415 1.211703 TGAAGAGACTTGGTTGGTGCA 59.788 47.619 0.00 0.00 0.00 4.57
546 800 9.981114 AGAAACAAGTTTAAAATCCCATTACTG 57.019 29.630 0.00 0.00 32.11 2.74
547 801 9.974980 GAAACAAGTTTAAAATCCCATTACTGA 57.025 29.630 0.00 0.00 32.11 3.41
558 813 6.633325 ATCCCATTACTGATTATCCTGGAG 57.367 41.667 1.52 0.00 0.00 3.86
563 818 7.229506 CCCATTACTGATTATCCTGGAGAAAAC 59.770 40.741 7.97 6.30 0.00 2.43
572 827 8.655935 ATTATCCTGGAGAAAACATCAAAAGT 57.344 30.769 7.97 0.00 0.00 2.66
573 828 5.772825 TCCTGGAGAAAACATCAAAAGTG 57.227 39.130 0.00 0.00 0.00 3.16
575 830 5.656416 TCCTGGAGAAAACATCAAAAGTGTT 59.344 36.000 0.00 0.00 41.28 3.32
583 874 9.305925 AGAAAACATCAAAAGTGTTGAAAGATC 57.694 29.630 0.00 0.00 39.57 2.75
591 882 6.391227 AAAGTGTTGAAAGATCGGTTGATT 57.609 33.333 0.00 0.00 34.09 2.57
592 883 5.362556 AGTGTTGAAAGATCGGTTGATTG 57.637 39.130 0.00 0.00 34.09 2.67
593 884 3.914364 GTGTTGAAAGATCGGTTGATTGC 59.086 43.478 0.00 0.00 34.09 3.56
606 897 6.432107 TCGGTTGATTGCAAGTAAAAAGTAC 58.568 36.000 4.94 0.00 34.01 2.73
621 923 4.789012 AAAGTACTCCATGCATGTTTGG 57.211 40.909 24.58 11.84 0.00 3.28
648 982 4.799473 CGCTGCAATCCACGCACG 62.799 66.667 0.00 0.00 35.08 5.34
650 984 3.725459 CTGCAATCCACGCACGCA 61.725 61.111 0.00 0.00 35.08 5.24
651 985 3.656243 CTGCAATCCACGCACGCAG 62.656 63.158 0.00 0.00 43.55 5.18
747 1099 4.174129 CGCGCGTTTCCATTCCCC 62.174 66.667 24.19 0.00 0.00 4.81
748 1100 3.822192 GCGCGTTTCCATTCCCCC 61.822 66.667 8.43 0.00 0.00 5.40
749 1101 2.360600 CGCGTTTCCATTCCCCCA 60.361 61.111 0.00 0.00 0.00 4.96
844 1242 3.388552 AATCCTCCAATCCAAGAACCC 57.611 47.619 0.00 0.00 0.00 4.11
850 1248 1.288932 CCAATCCAAGAACCCATCCCT 59.711 52.381 0.00 0.00 0.00 4.20
855 1253 1.340405 CCAAGAACCCATCCCTGACTG 60.340 57.143 0.00 0.00 0.00 3.51
975 1389 2.266055 CCACCACCGCCTCTTCTC 59.734 66.667 0.00 0.00 0.00 2.87
986 1400 1.127343 CCTCTTCTCCTGATCCACCC 58.873 60.000 0.00 0.00 0.00 4.61
990 1404 0.914417 TTCTCCTGATCCACCCACCC 60.914 60.000 0.00 0.00 0.00 4.61
1437 1863 2.202987 GAGATGGTGCTGAGCCGG 60.203 66.667 0.23 0.00 0.00 6.13
1440 1866 4.479993 ATGGTGCTGAGCCGGCTC 62.480 66.667 43.07 43.07 43.01 4.70
1581 2008 4.452733 CTGTTCGGGGTCGAGGCC 62.453 72.222 0.00 0.00 46.75 5.19
1687 2129 0.392595 CCCGCTCAAAGGTAGGTTCC 60.393 60.000 0.00 0.00 0.00 3.62
1770 2213 4.373116 GCCGGCTCCGTCAAGACA 62.373 66.667 22.15 0.00 37.81 3.41
1776 2219 1.540363 GGCTCCGTCAAGACAAAGACA 60.540 52.381 0.72 0.00 34.48 3.41
2025 2468 1.142748 GCTCCGTCTCAGGGATGTG 59.857 63.158 0.00 0.00 30.94 3.21
2090 2533 3.060615 GGCTGCCAGGCAACAGAG 61.061 66.667 17.03 4.20 40.97 3.35
2484 2961 1.216710 CGAGCTGAACCTCACCTCC 59.783 63.158 0.00 0.00 27.76 4.30
2721 3342 2.922503 TCCTGCCGGCTGAAGTCA 60.923 61.111 32.43 7.61 0.00 3.41
2861 3595 1.740297 TTCCATTGCATTGCATTGCC 58.260 45.000 26.06 12.05 42.06 4.52
2979 3713 4.532126 TGATACCAACCACAATCAGACTCT 59.468 41.667 0.00 0.00 0.00 3.24
2983 3717 3.750130 CCAACCACAATCAGACTCTCTTG 59.250 47.826 0.00 0.00 0.00 3.02
2984 3718 4.384056 CAACCACAATCAGACTCTCTTGT 58.616 43.478 0.00 0.00 32.27 3.16
2985 3719 5.511373 CCAACCACAATCAGACTCTCTTGTA 60.511 44.000 4.07 0.00 31.01 2.41
2987 3721 6.174720 ACCACAATCAGACTCTCTTGTAAA 57.825 37.500 4.07 0.00 31.01 2.01
2989 3723 7.227156 ACCACAATCAGACTCTCTTGTAAATT 58.773 34.615 4.07 0.00 31.01 1.82
2993 3727 9.646427 ACAATCAGACTCTCTTGTAAATTAGTC 57.354 33.333 0.00 0.00 32.26 2.59
2995 3729 7.683437 TCAGACTCTCTTGTAAATTAGTCGA 57.317 36.000 0.00 0.00 35.29 4.20
2996 3730 7.753659 TCAGACTCTCTTGTAAATTAGTCGAG 58.246 38.462 0.00 0.00 35.29 4.04
2997 3731 7.606839 TCAGACTCTCTTGTAAATTAGTCGAGA 59.393 37.037 0.00 0.00 35.29 4.04
2998 3732 8.402472 CAGACTCTCTTGTAAATTAGTCGAGAT 58.598 37.037 0.00 0.00 35.29 2.75
2999 3733 8.962679 AGACTCTCTTGTAAATTAGTCGAGATT 58.037 33.333 0.00 0.00 35.29 2.40
3004 3738 9.176181 CTCTTGTAAATTAGTCGAGATTAGAGC 57.824 37.037 0.00 0.00 0.00 4.09
3005 3739 8.683615 TCTTGTAAATTAGTCGAGATTAGAGCA 58.316 33.333 0.00 0.00 0.00 4.26
3006 3740 9.302345 CTTGTAAATTAGTCGAGATTAGAGCAA 57.698 33.333 0.00 0.00 0.00 3.91
3007 3741 8.630278 TGTAAATTAGTCGAGATTAGAGCAAC 57.370 34.615 0.00 0.00 0.00 4.17
3009 3743 7.527084 AAATTAGTCGAGATTAGAGCAACAC 57.473 36.000 0.00 0.00 0.00 3.32
3012 3746 4.489810 AGTCGAGATTAGAGCAACACTTG 58.510 43.478 0.00 0.00 0.00 3.16
3013 3747 4.021894 AGTCGAGATTAGAGCAACACTTGT 60.022 41.667 0.00 0.00 0.00 3.16
3014 3748 4.090642 GTCGAGATTAGAGCAACACTTGTG 59.909 45.833 0.00 0.00 0.00 3.33
3015 3749 3.369147 CGAGATTAGAGCAACACTTGTGG 59.631 47.826 5.72 0.00 0.00 4.17
3025 3760 2.332063 ACACTTGTGGACTTGGTCAG 57.668 50.000 5.72 0.00 33.68 3.51
3044 3779 5.877012 GGTCAGTCTACACATGATTGTTCAT 59.123 40.000 0.00 0.00 43.51 2.57
3047 3782 6.751888 TCAGTCTACACATGATTGTTCATACG 59.248 38.462 0.00 0.00 40.70 3.06
3051 3786 3.374988 ACACATGATTGTTCATACGGCAG 59.625 43.478 0.00 0.00 40.70 4.85
3052 3787 2.355756 ACATGATTGTTCATACGGCAGC 59.644 45.455 0.00 0.00 40.70 5.25
3053 3788 2.106477 TGATTGTTCATACGGCAGCA 57.894 45.000 0.00 0.00 0.00 4.41
3054 3789 2.431454 TGATTGTTCATACGGCAGCAA 58.569 42.857 0.00 0.00 0.00 3.91
3055 3790 2.816672 TGATTGTTCATACGGCAGCAAA 59.183 40.909 0.00 0.00 0.00 3.68
3056 3791 2.987413 TTGTTCATACGGCAGCAAAG 57.013 45.000 0.00 0.00 0.00 2.77
3057 3792 2.177394 TGTTCATACGGCAGCAAAGA 57.823 45.000 0.00 0.00 0.00 2.52
3058 3793 2.076100 TGTTCATACGGCAGCAAAGAG 58.924 47.619 0.00 0.00 0.00 2.85
3096 3831 2.350804 GACTGTGCATGCATACACTCTG 59.649 50.000 26.33 18.96 37.68 3.35
3105 3840 3.475575 TGCATACACTCTGCACTTTTCA 58.524 40.909 0.00 0.00 44.30 2.69
3106 3841 4.074259 TGCATACACTCTGCACTTTTCAT 58.926 39.130 0.00 0.00 44.30 2.57
3108 3843 5.704978 TGCATACACTCTGCACTTTTCATAA 59.295 36.000 0.00 0.00 44.30 1.90
3110 3845 6.676456 GCATACACTCTGCACTTTTCATAAGG 60.676 42.308 0.00 0.00 39.46 2.69
3111 3846 4.074970 ACACTCTGCACTTTTCATAAGGG 58.925 43.478 0.00 0.00 0.00 3.95
3116 3851 3.874392 GCACTTTTCATAAGGGCATGT 57.126 42.857 6.87 0.00 45.61 3.21
3117 3852 4.981806 GCACTTTTCATAAGGGCATGTA 57.018 40.909 6.87 0.00 45.61 2.29
3118 3853 4.672409 GCACTTTTCATAAGGGCATGTAC 58.328 43.478 6.87 0.00 45.61 2.90
3119 3854 4.157656 GCACTTTTCATAAGGGCATGTACA 59.842 41.667 6.87 0.00 45.61 2.90
3120 3855 5.336372 GCACTTTTCATAAGGGCATGTACAA 60.336 40.000 0.00 0.00 45.61 2.41
3121 3856 6.627953 GCACTTTTCATAAGGGCATGTACAAT 60.628 38.462 0.00 0.00 45.61 2.71
3122 3857 6.753279 CACTTTTCATAAGGGCATGTACAATG 59.247 38.462 0.00 0.00 0.00 2.82
3123 3858 4.916983 TTCATAAGGGCATGTACAATGC 57.083 40.909 17.01 17.01 43.85 3.56
3124 3859 3.895998 TCATAAGGGCATGTACAATGCA 58.104 40.909 22.92 0.00 46.21 3.96
3125 3860 4.472496 TCATAAGGGCATGTACAATGCAT 58.528 39.130 22.92 14.73 46.21 3.96
3126 3861 5.629125 TCATAAGGGCATGTACAATGCATA 58.371 37.500 22.92 15.84 46.21 3.14
3127 3862 5.706833 TCATAAGGGCATGTACAATGCATAG 59.293 40.000 22.92 11.76 46.21 2.23
3128 3863 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
3129 3864 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
3130 3865 2.233271 GGCATGTACAATGCATAGCCT 58.767 47.619 22.92 0.00 46.21 4.58
3131 3866 2.227388 GGCATGTACAATGCATAGCCTC 59.773 50.000 22.92 7.94 46.21 4.70
3132 3867 2.880268 GCATGTACAATGCATAGCCTCA 59.120 45.455 19.12 0.00 44.00 3.86
3133 3868 3.316029 GCATGTACAATGCATAGCCTCAA 59.684 43.478 19.12 0.00 44.00 3.02
3134 3869 4.556104 GCATGTACAATGCATAGCCTCAAG 60.556 45.833 19.12 0.00 44.00 3.02
3135 3870 3.544684 TGTACAATGCATAGCCTCAAGG 58.455 45.455 0.00 0.00 38.53 3.61
3136 3871 2.814805 ACAATGCATAGCCTCAAGGT 57.185 45.000 0.00 0.00 37.57 3.50
3137 3872 2.372264 ACAATGCATAGCCTCAAGGTG 58.628 47.619 0.00 0.00 37.57 4.00
3138 3873 2.025981 ACAATGCATAGCCTCAAGGTGA 60.026 45.455 0.00 0.00 37.57 4.02
3139 3874 3.220110 CAATGCATAGCCTCAAGGTGAT 58.780 45.455 0.00 0.00 37.57 3.06
3140 3875 2.336945 TGCATAGCCTCAAGGTGATG 57.663 50.000 0.00 3.41 37.57 3.07
3141 3876 0.950116 GCATAGCCTCAAGGTGATGC 59.050 55.000 16.47 16.47 43.18 3.91
3142 3877 1.602311 CATAGCCTCAAGGTGATGCC 58.398 55.000 0.00 0.00 38.54 4.40
3156 3891 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
3157 3892 1.524393 TGCCTCGCATGCCATGTAG 60.524 57.895 13.15 4.55 31.71 2.74
3158 3893 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
3159 3894 1.447217 CCTCGCATGCCATGTAGGA 59.553 57.895 18.19 8.22 41.22 2.94
3160 3895 0.035881 CCTCGCATGCCATGTAGGAT 59.964 55.000 18.19 0.00 41.22 3.24
3161 3896 1.436600 CTCGCATGCCATGTAGGATC 58.563 55.000 13.15 0.00 41.22 3.36
3162 3897 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
3163 3898 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
3164 3899 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55
3165 3900 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
3166 3901 2.093500 GCATGCCATGTAGGATCGGATA 60.093 50.000 6.36 0.00 41.22 2.59
3167 3902 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
3168 3903 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
3169 3904 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
3170 3905 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
3171 3906 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
3172 3907 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
3173 3908 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
3174 3909 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
3175 3910 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
3176 3911 6.250344 TGTAGGATCGGATATGACGTAAAG 57.750 41.667 0.00 0.00 0.00 1.85
3177 3912 5.766670 TGTAGGATCGGATATGACGTAAAGT 59.233 40.000 0.00 0.00 0.00 2.66
3178 3913 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
3179 3914 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
3180 3915 5.415077 AGGATCGGATATGACGTAAAGTAGG 59.585 44.000 0.00 0.00 0.00 3.18
3181 3916 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
3182 3917 6.294397 GGATCGGATATGACGTAAAGTAGGTT 60.294 42.308 0.00 0.00 0.00 3.50
3183 3918 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
3184 3919 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
3185 3920 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
3186 3921 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
3187 3922 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
3188 3923 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
3189 3924 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
3190 3925 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
3191 3926 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
3192 3927 3.885297 CGTAAAGTAGGTTCGGATAGGGA 59.115 47.826 0.00 0.00 0.00 4.20
3193 3928 4.339247 CGTAAAGTAGGTTCGGATAGGGAA 59.661 45.833 0.00 0.00 0.00 3.97
3194 3929 5.506982 CGTAAAGTAGGTTCGGATAGGGAAG 60.507 48.000 0.00 0.00 0.00 3.46
3195 3930 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
3196 3931 2.037144 GTAGGTTCGGATAGGGAAGCA 58.963 52.381 6.51 0.00 42.68 3.91
3197 3932 1.123928 AGGTTCGGATAGGGAAGCAG 58.876 55.000 6.51 0.00 42.68 4.24
3198 3933 0.106894 GGTTCGGATAGGGAAGCAGG 59.893 60.000 0.00 0.00 40.59 4.85
3199 3934 1.120530 GTTCGGATAGGGAAGCAGGA 58.879 55.000 0.00 0.00 0.00 3.86
3200 3935 1.694696 GTTCGGATAGGGAAGCAGGAT 59.305 52.381 0.00 0.00 0.00 3.24
3201 3936 1.633774 TCGGATAGGGAAGCAGGATC 58.366 55.000 0.00 0.00 0.00 3.36
3202 3937 0.610687 CGGATAGGGAAGCAGGATCC 59.389 60.000 2.48 2.48 36.16 3.36
3203 3938 1.829261 CGGATAGGGAAGCAGGATCCT 60.829 57.143 9.02 9.02 37.14 3.24
3204 3939 1.905894 GGATAGGGAAGCAGGATCCTC 59.094 57.143 12.69 7.20 37.14 3.71
3205 3940 2.494439 GGATAGGGAAGCAGGATCCTCT 60.494 54.545 12.69 9.57 37.14 3.69
3206 3941 2.390225 TAGGGAAGCAGGATCCTCTC 57.610 55.000 12.69 8.84 37.14 3.20
3207 3942 0.399806 AGGGAAGCAGGATCCTCTCC 60.400 60.000 12.69 17.26 45.33 3.71
3219 3954 3.465403 CTCTCCAGGAGGCGGGTG 61.465 72.222 17.10 0.00 38.35 4.61
3223 3958 3.399181 CCAGGAGGCGGGTGCTTA 61.399 66.667 0.00 0.00 42.25 3.09
3224 3959 2.668632 CAGGAGGCGGGTGCTTAA 59.331 61.111 0.00 0.00 42.25 1.85
3225 3960 1.002624 CAGGAGGCGGGTGCTTAAA 60.003 57.895 0.00 0.00 42.25 1.52
3226 3961 1.026718 CAGGAGGCGGGTGCTTAAAG 61.027 60.000 0.00 0.00 42.25 1.85
3227 3962 1.198759 AGGAGGCGGGTGCTTAAAGA 61.199 55.000 0.00 0.00 42.25 2.52
3228 3963 0.744771 GGAGGCGGGTGCTTAAAGAG 60.745 60.000 0.00 0.00 42.25 2.85
3229 3964 0.249398 GAGGCGGGTGCTTAAAGAGA 59.751 55.000 0.00 0.00 42.25 3.10
3230 3965 0.690762 AGGCGGGTGCTTAAAGAGAA 59.309 50.000 0.00 0.00 42.25 2.87
3231 3966 1.073284 AGGCGGGTGCTTAAAGAGAAA 59.927 47.619 0.00 0.00 42.25 2.52
3232 3967 1.883926 GGCGGGTGCTTAAAGAGAAAA 59.116 47.619 0.00 0.00 42.25 2.29
3233 3968 2.295070 GGCGGGTGCTTAAAGAGAAAAA 59.705 45.455 0.00 0.00 42.25 1.94
3234 3969 3.565516 GCGGGTGCTTAAAGAGAAAAAG 58.434 45.455 0.00 0.00 38.39 2.27
3235 3970 3.565516 CGGGTGCTTAAAGAGAAAAAGC 58.434 45.455 0.00 0.00 44.63 3.51
3236 3971 3.565516 GGGTGCTTAAAGAGAAAAAGCG 58.434 45.455 0.00 0.00 46.78 4.68
3237 3972 3.004419 GGGTGCTTAAAGAGAAAAAGCGT 59.996 43.478 0.00 0.00 46.78 5.07
3238 3973 3.975035 GGTGCTTAAAGAGAAAAAGCGTG 59.025 43.478 0.00 0.00 46.78 5.34
3239 3974 3.975035 GTGCTTAAAGAGAAAAAGCGTGG 59.025 43.478 0.00 0.00 46.78 4.94
3240 3975 3.630312 TGCTTAAAGAGAAAAAGCGTGGT 59.370 39.130 0.00 0.00 46.78 4.16
3241 3976 4.219802 GCTTAAAGAGAAAAAGCGTGGTC 58.780 43.478 0.00 0.00 36.59 4.02
3242 3977 4.784329 CTTAAAGAGAAAAAGCGTGGTCC 58.216 43.478 0.00 0.00 0.00 4.46
3243 3978 1.226746 AAGAGAAAAAGCGTGGTCCG 58.773 50.000 0.00 0.00 40.40 4.79
3244 3979 0.391597 AGAGAAAAAGCGTGGTCCGA 59.608 50.000 0.00 0.00 39.56 4.55
3245 3980 1.002087 AGAGAAAAAGCGTGGTCCGAT 59.998 47.619 0.00 0.00 39.56 4.18
3246 3981 1.128692 GAGAAAAAGCGTGGTCCGATG 59.871 52.381 0.00 0.00 39.56 3.84
3247 3982 1.153353 GAAAAAGCGTGGTCCGATGA 58.847 50.000 0.00 0.00 39.56 2.92
3248 3983 0.872388 AAAAAGCGTGGTCCGATGAC 59.128 50.000 0.00 0.00 40.98 3.06
3249 3984 0.250124 AAAAGCGTGGTCCGATGACA 60.250 50.000 0.00 0.00 43.65 3.58
3250 3985 0.250124 AAAGCGTGGTCCGATGACAA 60.250 50.000 0.00 0.00 43.65 3.18
3251 3986 0.250124 AAGCGTGGTCCGATGACAAA 60.250 50.000 0.00 0.00 43.65 2.83
3252 3987 0.250124 AGCGTGGTCCGATGACAAAA 60.250 50.000 0.00 0.00 43.65 2.44
3253 3988 0.165944 GCGTGGTCCGATGACAAAAG 59.834 55.000 0.00 0.00 43.65 2.27
3254 3989 0.165944 CGTGGTCCGATGACAAAAGC 59.834 55.000 0.00 0.00 43.65 3.51
3255 3990 1.523758 GTGGTCCGATGACAAAAGCT 58.476 50.000 0.00 0.00 43.65 3.74
3256 3991 1.197721 GTGGTCCGATGACAAAAGCTG 59.802 52.381 0.00 0.00 43.65 4.24
3257 3992 1.071542 TGGTCCGATGACAAAAGCTGA 59.928 47.619 0.00 0.00 43.65 4.26
3258 3993 2.151202 GGTCCGATGACAAAAGCTGAA 58.849 47.619 0.00 0.00 43.65 3.02
3259 3994 2.552315 GGTCCGATGACAAAAGCTGAAA 59.448 45.455 0.00 0.00 43.65 2.69
3260 3995 3.004315 GGTCCGATGACAAAAGCTGAAAA 59.996 43.478 0.00 0.00 43.65 2.29
3261 3996 4.222114 GTCCGATGACAAAAGCTGAAAAG 58.778 43.478 0.00 0.00 41.37 2.27
3262 3997 3.253188 TCCGATGACAAAAGCTGAAAAGG 59.747 43.478 0.00 0.00 0.00 3.11
3263 3998 3.004734 CCGATGACAAAAGCTGAAAAGGT 59.995 43.478 0.00 0.00 0.00 3.50
3264 3999 4.499696 CCGATGACAAAAGCTGAAAAGGTT 60.500 41.667 0.00 0.00 0.00 3.50
3265 4000 4.442073 CGATGACAAAAGCTGAAAAGGTTG 59.558 41.667 0.00 0.00 0.00 3.77
3266 4001 4.122143 TGACAAAAGCTGAAAAGGTTGG 57.878 40.909 0.00 0.00 0.00 3.77
3267 4002 3.766591 TGACAAAAGCTGAAAAGGTTGGA 59.233 39.130 0.00 0.00 0.00 3.53
3268 4003 4.142182 TGACAAAAGCTGAAAAGGTTGGAG 60.142 41.667 0.00 0.00 0.00 3.86
3269 4004 3.769300 ACAAAAGCTGAAAAGGTTGGAGT 59.231 39.130 0.00 0.00 0.00 3.85
3270 4005 4.114794 CAAAAGCTGAAAAGGTTGGAGTG 58.885 43.478 0.00 0.00 0.00 3.51
3271 4006 3.297134 AAGCTGAAAAGGTTGGAGTGA 57.703 42.857 0.00 0.00 0.00 3.41
3272 4007 3.297134 AGCTGAAAAGGTTGGAGTGAA 57.703 42.857 0.00 0.00 0.00 3.18
3273 4008 3.631250 AGCTGAAAAGGTTGGAGTGAAA 58.369 40.909 0.00 0.00 0.00 2.69
3274 4009 4.023291 AGCTGAAAAGGTTGGAGTGAAAA 58.977 39.130 0.00 0.00 0.00 2.29
3275 4010 4.098501 AGCTGAAAAGGTTGGAGTGAAAAG 59.901 41.667 0.00 0.00 0.00 2.27
3276 4011 4.142160 GCTGAAAAGGTTGGAGTGAAAAGT 60.142 41.667 0.00 0.00 0.00 2.66
3277 4012 5.067283 GCTGAAAAGGTTGGAGTGAAAAGTA 59.933 40.000 0.00 0.00 0.00 2.24
3278 4013 6.693315 TGAAAAGGTTGGAGTGAAAAGTAG 57.307 37.500 0.00 0.00 0.00 2.57
3279 4014 6.419791 TGAAAAGGTTGGAGTGAAAAGTAGA 58.580 36.000 0.00 0.00 0.00 2.59
3280 4015 6.542370 TGAAAAGGTTGGAGTGAAAAGTAGAG 59.458 38.462 0.00 0.00 0.00 2.43
3281 4016 5.888982 AAGGTTGGAGTGAAAAGTAGAGA 57.111 39.130 0.00 0.00 0.00 3.10
3282 4017 6.441088 AAGGTTGGAGTGAAAAGTAGAGAT 57.559 37.500 0.00 0.00 0.00 2.75
3283 4018 5.799213 AGGTTGGAGTGAAAAGTAGAGATG 58.201 41.667 0.00 0.00 0.00 2.90
3284 4019 4.393371 GGTTGGAGTGAAAAGTAGAGATGC 59.607 45.833 0.00 0.00 0.00 3.91
3285 4020 4.890158 TGGAGTGAAAAGTAGAGATGCA 57.110 40.909 0.00 0.00 0.00 3.96
3286 4021 5.426689 TGGAGTGAAAAGTAGAGATGCAT 57.573 39.130 0.00 0.00 0.00 3.96
3287 4022 5.181009 TGGAGTGAAAAGTAGAGATGCATG 58.819 41.667 2.46 0.00 0.00 4.06
3288 4023 5.181748 GGAGTGAAAAGTAGAGATGCATGT 58.818 41.667 2.46 0.00 0.00 3.21
3289 4024 5.064452 GGAGTGAAAAGTAGAGATGCATGTG 59.936 44.000 2.46 0.00 0.00 3.21
3290 4025 5.555017 AGTGAAAAGTAGAGATGCATGTGT 58.445 37.500 2.46 0.00 0.00 3.72
3291 4026 6.701340 AGTGAAAAGTAGAGATGCATGTGTA 58.299 36.000 2.46 0.00 0.00 2.90
3292 4027 6.591834 AGTGAAAAGTAGAGATGCATGTGTAC 59.408 38.462 19.88 19.88 0.00 2.90
3293 4028 6.591834 GTGAAAAGTAGAGATGCATGTGTACT 59.408 38.462 23.22 23.22 32.62 2.73
3294 4029 6.591448 TGAAAAGTAGAGATGCATGTGTACTG 59.409 38.462 27.57 0.00 31.84 2.74
3295 4030 5.921962 AAGTAGAGATGCATGTGTACTGA 57.078 39.130 27.57 0.00 31.84 3.41
3296 4031 5.921962 AGTAGAGATGCATGTGTACTGAA 57.078 39.130 26.67 0.00 30.57 3.02
3297 4032 5.900425 AGTAGAGATGCATGTGTACTGAAG 58.100 41.667 26.67 0.00 30.57 3.02
3298 4033 4.815533 AGAGATGCATGTGTACTGAAGT 57.184 40.909 2.46 0.00 0.00 3.01
3299 4034 4.753233 AGAGATGCATGTGTACTGAAGTC 58.247 43.478 2.46 0.00 0.00 3.01
3300 4035 4.465660 AGAGATGCATGTGTACTGAAGTCT 59.534 41.667 2.46 0.00 0.00 3.24
3301 4036 5.046735 AGAGATGCATGTGTACTGAAGTCTT 60.047 40.000 2.46 0.00 0.00 3.01
3302 4037 5.555017 AGATGCATGTGTACTGAAGTCTTT 58.445 37.500 2.46 0.00 0.00 2.52
3303 4038 6.701340 AGATGCATGTGTACTGAAGTCTTTA 58.299 36.000 2.46 0.00 0.00 1.85
3304 4039 7.334090 AGATGCATGTGTACTGAAGTCTTTAT 58.666 34.615 2.46 0.00 0.00 1.40
3305 4040 7.826252 AGATGCATGTGTACTGAAGTCTTTATT 59.174 33.333 2.46 0.00 0.00 1.40
3306 4041 7.744087 TGCATGTGTACTGAAGTCTTTATTT 57.256 32.000 0.00 0.00 0.00 1.40
3307 4042 8.165239 TGCATGTGTACTGAAGTCTTTATTTT 57.835 30.769 0.00 0.00 0.00 1.82
3308 4043 8.629158 TGCATGTGTACTGAAGTCTTTATTTTT 58.371 29.630 0.00 0.00 0.00 1.94
3338 4073 7.887381 TCTTAATAAGGCTCACTAGTGATAGC 58.113 38.462 25.35 23.79 39.13 2.97
3339 4074 7.726291 TCTTAATAAGGCTCACTAGTGATAGCT 59.274 37.037 26.92 16.19 39.13 3.32
3340 4075 6.739331 AATAAGGCTCACTAGTGATAGCTT 57.261 37.500 26.92 20.88 39.13 3.74
3341 4076 4.399004 AAGGCTCACTAGTGATAGCTTG 57.601 45.455 26.92 16.61 39.13 4.01
3342 4077 2.102252 AGGCTCACTAGTGATAGCTTGC 59.898 50.000 26.92 23.17 39.13 4.01
3343 4078 2.159043 GGCTCACTAGTGATAGCTTGCA 60.159 50.000 26.92 6.12 39.13 4.08
3344 4079 3.494048 GGCTCACTAGTGATAGCTTGCAT 60.494 47.826 26.92 0.00 39.13 3.96
3345 4080 4.125703 GCTCACTAGTGATAGCTTGCATT 58.874 43.478 25.35 0.00 39.13 3.56
3346 4081 4.025061 GCTCACTAGTGATAGCTTGCATTG 60.025 45.833 25.35 10.49 39.13 2.82
3347 4082 4.445453 TCACTAGTGATAGCTTGCATTGG 58.555 43.478 21.74 0.00 34.14 3.16
3348 4083 4.162131 TCACTAGTGATAGCTTGCATTGGA 59.838 41.667 21.74 0.00 34.14 3.53
3349 4084 4.877823 CACTAGTGATAGCTTGCATTGGAA 59.122 41.667 18.45 0.00 0.00 3.53
3350 4085 5.355071 CACTAGTGATAGCTTGCATTGGAAA 59.645 40.000 18.45 0.00 0.00 3.13
3351 4086 4.978083 AGTGATAGCTTGCATTGGAAAG 57.022 40.909 0.00 0.00 32.28 2.62
3352 4087 4.592942 AGTGATAGCTTGCATTGGAAAGA 58.407 39.130 0.00 0.00 30.42 2.52
3353 4088 5.012239 AGTGATAGCTTGCATTGGAAAGAA 58.988 37.500 0.00 0.00 30.42 2.52
3354 4089 5.477984 AGTGATAGCTTGCATTGGAAAGAAA 59.522 36.000 0.00 0.00 30.42 2.52
3355 4090 6.015180 AGTGATAGCTTGCATTGGAAAGAAAA 60.015 34.615 0.00 0.00 30.42 2.29
3356 4091 6.646240 GTGATAGCTTGCATTGGAAAGAAAAA 59.354 34.615 0.00 0.00 30.42 1.94
3391 4126 9.199982 AGATGCTTCAAATTACTTTTTGTCATG 57.800 29.630 2.07 0.00 37.73 3.07
3392 4127 7.712264 TGCTTCAAATTACTTTTTGTCATGG 57.288 32.000 0.00 0.00 37.73 3.66
3393 4128 6.705381 TGCTTCAAATTACTTTTTGTCATGGG 59.295 34.615 0.00 0.00 37.73 4.00
3394 4129 6.147656 GCTTCAAATTACTTTTTGTCATGGGG 59.852 38.462 0.00 0.00 37.73 4.96
3395 4130 5.546526 TCAAATTACTTTTTGTCATGGGGC 58.453 37.500 0.00 0.00 37.73 5.80
3396 4131 5.070981 TCAAATTACTTTTTGTCATGGGGCA 59.929 36.000 0.00 0.00 37.73 5.36
3397 4132 5.760484 AATTACTTTTTGTCATGGGGCAT 57.240 34.783 0.00 0.00 0.00 4.40
3398 4133 6.865834 AATTACTTTTTGTCATGGGGCATA 57.134 33.333 0.00 0.00 0.00 3.14
3399 4134 7.436320 AATTACTTTTTGTCATGGGGCATAT 57.564 32.000 0.00 0.00 0.00 1.78
3400 4135 4.741321 ACTTTTTGTCATGGGGCATATG 57.259 40.909 0.00 0.00 0.00 1.78
3401 4136 4.095946 ACTTTTTGTCATGGGGCATATGT 58.904 39.130 4.29 0.00 0.00 2.29
3402 4137 5.268387 ACTTTTTGTCATGGGGCATATGTA 58.732 37.500 4.29 0.00 0.00 2.29
3403 4138 5.898972 ACTTTTTGTCATGGGGCATATGTAT 59.101 36.000 4.29 0.00 0.00 2.29
3404 4139 6.040842 ACTTTTTGTCATGGGGCATATGTATC 59.959 38.462 4.29 0.00 0.00 2.24
3405 4140 3.719268 TGTCATGGGGCATATGTATCC 57.281 47.619 4.29 4.59 0.00 2.59
3406 4141 2.985311 TGTCATGGGGCATATGTATCCA 59.015 45.455 13.42 13.42 0.00 3.41
3407 4142 3.592877 TGTCATGGGGCATATGTATCCAT 59.407 43.478 15.86 15.86 38.61 3.41
3408 4143 4.787534 TGTCATGGGGCATATGTATCCATA 59.212 41.667 19.04 7.91 36.55 2.74
3409 4144 5.432720 TGTCATGGGGCATATGTATCCATAT 59.567 40.000 19.04 9.16 43.54 1.78
3420 4155 4.451891 TGTATCCATATGCCACCATTGT 57.548 40.909 0.00 0.00 32.85 2.71
3421 4156 5.574970 TGTATCCATATGCCACCATTGTA 57.425 39.130 0.00 0.00 32.85 2.41
3422 4157 5.312895 TGTATCCATATGCCACCATTGTAC 58.687 41.667 0.00 0.00 32.85 2.90
3423 4158 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
3424 4159 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
3425 4160 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
3426 4161 3.305539 CCATATGCCACCATTGTACATGC 60.306 47.826 0.00 0.00 32.85 4.06
3427 4162 1.113788 ATGCCACCATTGTACATGCC 58.886 50.000 0.00 0.00 0.00 4.40
3428 4163 0.969917 TGCCACCATTGTACATGCCC 60.970 55.000 0.00 0.00 0.00 5.36
3450 4191 6.405397 GCCCTAATGTAATACAGGTTTGTTGG 60.405 42.308 0.00 0.00 38.76 3.77
3458 4199 3.457610 ACAGGTTTGTTGGCAAATCAG 57.542 42.857 0.00 1.12 45.55 2.90
3465 4206 1.601903 TGTTGGCAAATCAGTGTCGAC 59.398 47.619 9.11 9.11 37.91 4.20
3485 4226 1.134401 CGGCAGTGGGACTATCACAAT 60.134 52.381 0.00 0.00 37.58 2.71
3518 4259 7.128331 CGTGGATGATTAAGATTTGTCATCAC 58.872 38.462 13.67 9.86 45.42 3.06
3519 4260 7.011763 CGTGGATGATTAAGATTTGTCATCACT 59.988 37.037 13.67 0.00 45.42 3.41
3520 4261 8.127327 GTGGATGATTAAGATTTGTCATCACTG 58.873 37.037 13.67 0.00 45.42 3.66
3521 4262 7.283807 TGGATGATTAAGATTTGTCATCACTGG 59.716 37.037 13.67 0.00 45.42 4.00
3533 4274 8.771920 TTTGTCATCACTGGTAGTATTAGTTG 57.228 34.615 0.00 0.00 0.00 3.16
3598 4339 4.023963 GTGGGTCTCTTTTAAACTGTGCTC 60.024 45.833 0.00 0.00 0.00 4.26
3642 4384 8.696410 CCAAAATTTGGCATTTAAGTATACGT 57.304 30.769 12.23 0.00 45.17 3.57
3643 4385 9.790389 CCAAAATTTGGCATTTAAGTATACGTA 57.210 29.630 12.23 0.00 45.17 3.57
3710 4452 4.000988 ACCCGTGCAAAATTGTACTCTAG 58.999 43.478 11.63 0.00 40.91 2.43
3711 4453 4.000988 CCCGTGCAAAATTGTACTCTAGT 58.999 43.478 11.63 0.00 40.91 2.57
3726 4468 3.203263 ACTCTAGTACAGATCTGGCCAGA 59.797 47.826 36.73 36.73 42.37 3.86
3727 4469 3.820467 CTCTAGTACAGATCTGGCCAGAG 59.180 52.174 37.03 26.66 41.33 3.35
3728 4470 2.541233 AGTACAGATCTGGCCAGAGT 57.459 50.000 37.03 30.30 41.33 3.24
3729 4471 3.671740 AGTACAGATCTGGCCAGAGTA 57.328 47.619 37.03 29.31 41.33 2.59
3730 4472 4.191804 AGTACAGATCTGGCCAGAGTAT 57.808 45.455 37.03 23.39 41.33 2.12
3731 4473 4.551671 AGTACAGATCTGGCCAGAGTATT 58.448 43.478 37.03 26.26 41.33 1.89
3732 4474 4.965532 AGTACAGATCTGGCCAGAGTATTT 59.034 41.667 37.03 22.62 41.33 1.40
3733 4475 4.851639 ACAGATCTGGCCAGAGTATTTT 57.148 40.909 37.03 21.86 41.33 1.82
3734 4476 5.957771 ACAGATCTGGCCAGAGTATTTTA 57.042 39.130 37.03 15.08 41.33 1.52
3735 4477 5.923204 ACAGATCTGGCCAGAGTATTTTAG 58.077 41.667 37.03 22.27 41.33 1.85
3736 4478 4.754114 CAGATCTGGCCAGAGTATTTTAGC 59.246 45.833 37.03 16.95 41.33 3.09
3737 4479 4.410228 AGATCTGGCCAGAGTATTTTAGCA 59.590 41.667 37.03 13.01 41.33 3.49
3738 4480 3.873910 TCTGGCCAGAGTATTTTAGCAC 58.126 45.455 32.00 0.00 32.82 4.40
3739 4481 3.519510 TCTGGCCAGAGTATTTTAGCACT 59.480 43.478 32.00 0.00 32.82 4.40
3740 4482 4.019321 TCTGGCCAGAGTATTTTAGCACTT 60.019 41.667 32.00 0.00 32.82 3.16
3741 4483 4.662278 TGGCCAGAGTATTTTAGCACTTT 58.338 39.130 0.00 0.00 0.00 2.66
3742 4484 4.700213 TGGCCAGAGTATTTTAGCACTTTC 59.300 41.667 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.340114 GCCTCCTCGGTCCTCATTTTT 60.340 52.381 0.00 0.00 34.25 1.94
20 21 2.043852 GAGCCTCCTCGGTCCTCA 60.044 66.667 0.00 0.00 34.25 3.86
78 79 2.257286 CTTGCCGCCATCCAACTTCG 62.257 60.000 0.00 0.00 0.00 3.79
93 94 1.098050 ATCGCCATCAACTTCCTTGC 58.902 50.000 0.00 0.00 0.00 4.01
109 110 1.181786 GCCTCCTATCCTCTCCATCG 58.818 60.000 0.00 0.00 0.00 3.84
147 148 1.681327 GCCCGTCCCACTCTAGACA 60.681 63.158 0.00 0.00 33.08 3.41
197 198 4.336713 TCTCACGTCTCACATATCTCCTTG 59.663 45.833 0.00 0.00 0.00 3.61
249 251 3.903714 TCTCTTCTCCACCAACATCTTCA 59.096 43.478 0.00 0.00 0.00 3.02
255 257 4.705110 TGATTTCTCTTCTCCACCAACA 57.295 40.909 0.00 0.00 0.00 3.33
261 263 7.720957 TCAACTTTTCATGATTTCTCTTCTCCA 59.279 33.333 0.00 0.00 0.00 3.86
299 301 4.342378 TCGCATTCTTCTATTGTAGCCTCT 59.658 41.667 0.00 0.00 0.00 3.69
304 306 5.636965 CCCATCTCGCATTCTTCTATTGTAG 59.363 44.000 0.00 0.00 0.00 2.74
318 320 1.065926 GCATATCATCCCCATCTCGCA 60.066 52.381 0.00 0.00 0.00 5.10
319 321 1.065926 TGCATATCATCCCCATCTCGC 60.066 52.381 0.00 0.00 0.00 5.03
385 387 5.765182 CACCAACCAAGTCTCTTCAAGTTAT 59.235 40.000 0.00 0.00 0.00 1.89
411 415 3.181461 CCCTTCATACGGCATCTTCTCTT 60.181 47.826 0.00 0.00 0.00 2.85
473 477 9.528018 AAAATTCAGACGATTTTGTTTATGTGT 57.472 25.926 0.00 0.00 0.00 3.72
474 478 9.782028 CAAAATTCAGACGATTTTGTTTATGTG 57.218 29.630 10.43 0.00 39.25 3.21
536 790 5.726560 TCTCCAGGATAATCAGTAATGGGA 58.273 41.667 0.00 0.00 0.00 4.37
537 791 6.439636 TTCTCCAGGATAATCAGTAATGGG 57.560 41.667 0.00 0.00 0.00 4.00
538 792 7.775093 TGTTTTCTCCAGGATAATCAGTAATGG 59.225 37.037 0.00 0.00 0.00 3.16
541 795 8.548025 TGATGTTTTCTCCAGGATAATCAGTAA 58.452 33.333 0.00 0.00 0.00 2.24
543 797 6.962182 TGATGTTTTCTCCAGGATAATCAGT 58.038 36.000 0.00 0.00 0.00 3.41
544 798 7.870509 TTGATGTTTTCTCCAGGATAATCAG 57.129 36.000 0.00 0.00 0.00 2.90
545 799 8.648698 TTTTGATGTTTTCTCCAGGATAATCA 57.351 30.769 0.00 0.00 0.00 2.57
546 800 8.743714 ACTTTTGATGTTTTCTCCAGGATAATC 58.256 33.333 0.00 0.00 0.00 1.75
547 801 8.526147 CACTTTTGATGTTTTCTCCAGGATAAT 58.474 33.333 0.00 0.00 0.00 1.28
553 808 6.563422 TCAACACTTTTGATGTTTTCTCCAG 58.437 36.000 0.00 0.00 38.22 3.86
555 810 7.759433 TCTTTCAACACTTTTGATGTTTTCTCC 59.241 33.333 0.00 0.00 38.22 3.71
558 813 8.261908 CGATCTTTCAACACTTTTGATGTTTTC 58.738 33.333 0.00 0.00 38.22 2.29
563 818 5.762045 ACCGATCTTTCAACACTTTTGATG 58.238 37.500 0.00 0.00 0.00 3.07
572 827 3.567585 TGCAATCAACCGATCTTTCAACA 59.432 39.130 0.00 0.00 0.00 3.33
573 828 4.159377 TGCAATCAACCGATCTTTCAAC 57.841 40.909 0.00 0.00 0.00 3.18
575 830 3.820467 ACTTGCAATCAACCGATCTTTCA 59.180 39.130 0.00 0.00 0.00 2.69
583 874 6.435428 AGTACTTTTTACTTGCAATCAACCG 58.565 36.000 0.00 0.00 0.00 4.44
591 882 4.824537 TGCATGGAGTACTTTTTACTTGCA 59.175 37.500 15.27 15.27 36.83 4.08
592 883 5.371115 TGCATGGAGTACTTTTTACTTGC 57.629 39.130 0.00 6.61 32.44 4.01
593 884 6.913170 ACATGCATGGAGTACTTTTTACTTG 58.087 36.000 29.41 0.52 0.00 3.16
606 897 0.458669 GAGCCCAAACATGCATGGAG 59.541 55.000 29.41 17.87 39.12 3.86
694 1034 3.997400 GGGCCTTTTCCGGGCTCTC 62.997 68.421 0.84 0.00 46.15 3.20
844 1242 0.036010 GGTGTGGTCAGTCAGGGATG 60.036 60.000 0.00 0.00 0.00 3.51
850 1248 3.936203 GCCCGGTGTGGTCAGTCA 61.936 66.667 0.00 0.00 35.15 3.41
924 1338 2.760385 GGAGGTGGAGGAGGACGG 60.760 72.222 0.00 0.00 0.00 4.79
975 1389 2.677228 GTGGGTGGGTGGATCAGG 59.323 66.667 0.00 0.00 0.00 3.86
986 1400 1.076777 GACATGGGATGGGTGGGTG 60.077 63.158 0.00 0.00 33.60 4.61
990 1404 4.993307 CCAGACATGGGATGGGTG 57.007 61.111 0.00 0.00 43.54 4.61
1120 1534 3.160748 GCAGCTCCTCCTCCCTCC 61.161 72.222 0.00 0.00 0.00 4.30
1560 1986 1.215647 CTCGACCCCGAACAGGAAG 59.784 63.158 0.00 0.00 45.04 3.46
1770 2213 3.480470 CATGACTCCCTTGTGTGTCTTT 58.520 45.455 0.00 0.00 0.00 2.52
1776 2219 1.140312 ACACCATGACTCCCTTGTGT 58.860 50.000 0.00 0.00 0.00 3.72
2025 2468 0.389948 AATCGGTGTCCTCGTTCAGC 60.390 55.000 0.00 0.00 0.00 4.26
2170 2613 3.761481 CGGTCACCGGATCGTATAC 57.239 57.895 8.94 0.00 42.66 1.47
2295 2739 2.109181 GCGTCCAGATGGTAGGCC 59.891 66.667 0.00 0.00 36.34 5.19
2352 2796 2.799371 GTGTAGTCTCGGAGCCGG 59.201 66.667 9.29 0.00 40.25 6.13
2479 2956 4.008933 GAGCAGCGGTGTGGAGGT 62.009 66.667 17.07 0.00 0.00 3.85
2480 2957 4.767255 GGAGCAGCGGTGTGGAGG 62.767 72.222 17.07 0.00 0.00 4.30
2721 3342 1.455217 GAGGAGCAGCATGGCCATT 60.455 57.895 17.92 0.00 35.86 3.16
2979 3713 8.683615 TGCTCTAATCTCGACTAATTTACAAGA 58.316 33.333 0.00 0.00 0.00 3.02
2983 3717 8.533153 GTGTTGCTCTAATCTCGACTAATTTAC 58.467 37.037 0.00 0.00 0.00 2.01
2984 3718 8.467598 AGTGTTGCTCTAATCTCGACTAATTTA 58.532 33.333 0.00 0.00 0.00 1.40
2985 3719 7.324178 AGTGTTGCTCTAATCTCGACTAATTT 58.676 34.615 0.00 0.00 0.00 1.82
2987 3721 6.458232 AGTGTTGCTCTAATCTCGACTAAT 57.542 37.500 0.00 0.00 0.00 1.73
2989 3723 5.183331 ACAAGTGTTGCTCTAATCTCGACTA 59.817 40.000 0.00 0.00 0.00 2.59
2993 3727 3.369147 CCACAAGTGTTGCTCTAATCTCG 59.631 47.826 0.00 0.00 0.00 4.04
2995 3729 4.040952 AGTCCACAAGTGTTGCTCTAATCT 59.959 41.667 0.00 0.00 0.00 2.40
2996 3730 4.319177 AGTCCACAAGTGTTGCTCTAATC 58.681 43.478 0.00 0.00 0.00 1.75
2997 3731 4.357918 AGTCCACAAGTGTTGCTCTAAT 57.642 40.909 0.00 0.00 0.00 1.73
2998 3732 3.838244 AGTCCACAAGTGTTGCTCTAA 57.162 42.857 0.00 0.00 0.00 2.10
2999 3733 3.466836 CAAGTCCACAAGTGTTGCTCTA 58.533 45.455 0.00 0.00 0.00 2.43
3002 3736 1.340991 ACCAAGTCCACAAGTGTTGCT 60.341 47.619 0.00 0.00 0.00 3.91
3003 3737 1.065551 GACCAAGTCCACAAGTGTTGC 59.934 52.381 0.00 0.00 0.00 4.17
3004 3738 2.355756 CTGACCAAGTCCACAAGTGTTG 59.644 50.000 0.00 0.00 0.00 3.33
3005 3739 2.026262 ACTGACCAAGTCCACAAGTGTT 60.026 45.455 0.00 0.00 31.64 3.32
3006 3740 1.559682 ACTGACCAAGTCCACAAGTGT 59.440 47.619 0.00 0.00 31.64 3.55
3007 3741 2.332063 ACTGACCAAGTCCACAAGTG 57.668 50.000 0.00 0.00 31.64 3.16
3014 3748 9.832533 ACAATCATGTGTAGACTGACCAAGTCC 62.833 44.444 1.95 0.00 46.64 3.85
3015 3749 7.016277 ACAATCATGTGTAGACTGACCAAGTC 61.016 42.308 0.00 0.00 46.21 3.01
3025 3760 5.276868 GCCGTATGAACAATCATGTGTAGAC 60.277 44.000 1.69 0.00 45.82 2.59
3032 3767 2.355444 TGCTGCCGTATGAACAATCATG 59.645 45.455 0.00 0.00 45.82 3.07
3044 3779 1.893137 TCTCTTCTCTTTGCTGCCGTA 59.107 47.619 0.00 0.00 0.00 4.02
3047 3782 2.487372 CCTTTCTCTTCTCTTTGCTGCC 59.513 50.000 0.00 0.00 0.00 4.85
3051 3786 2.508526 TGCCCTTTCTCTTCTCTTTGC 58.491 47.619 0.00 0.00 0.00 3.68
3052 3787 4.077822 ACATGCCCTTTCTCTTCTCTTTG 58.922 43.478 0.00 0.00 0.00 2.77
3053 3788 4.077822 CACATGCCCTTTCTCTTCTCTTT 58.922 43.478 0.00 0.00 0.00 2.52
3054 3789 3.328931 TCACATGCCCTTTCTCTTCTCTT 59.671 43.478 0.00 0.00 0.00 2.85
3055 3790 2.909006 TCACATGCCCTTTCTCTTCTCT 59.091 45.455 0.00 0.00 0.00 3.10
3056 3791 3.006247 GTCACATGCCCTTTCTCTTCTC 58.994 50.000 0.00 0.00 0.00 2.87
3057 3792 2.641815 AGTCACATGCCCTTTCTCTTCT 59.358 45.455 0.00 0.00 0.00 2.85
3058 3793 2.746362 CAGTCACATGCCCTTTCTCTTC 59.254 50.000 0.00 0.00 0.00 2.87
3096 3831 3.874392 ACATGCCCTTATGAAAAGTGC 57.126 42.857 0.00 0.00 0.00 4.40
3105 3840 4.460382 GCTATGCATTGTACATGCCCTTAT 59.540 41.667 20.37 13.01 43.94 1.73
3106 3841 3.820467 GCTATGCATTGTACATGCCCTTA 59.180 43.478 20.37 12.26 43.94 2.69
3108 3843 2.233271 GCTATGCATTGTACATGCCCT 58.767 47.619 20.37 13.49 43.94 5.19
3110 3845 2.227388 GAGGCTATGCATTGTACATGCC 59.773 50.000 20.37 7.92 43.94 4.40
3111 3846 2.880268 TGAGGCTATGCATTGTACATGC 59.120 45.455 3.54 17.91 44.76 4.06
3113 3848 4.139786 CCTTGAGGCTATGCATTGTACAT 58.860 43.478 3.54 0.00 0.00 2.29
3114 3849 3.054434 ACCTTGAGGCTATGCATTGTACA 60.054 43.478 3.54 2.41 39.32 2.90
3115 3850 3.313526 CACCTTGAGGCTATGCATTGTAC 59.686 47.826 3.54 0.42 39.32 2.90
3116 3851 3.199727 TCACCTTGAGGCTATGCATTGTA 59.800 43.478 3.54 0.00 39.32 2.41
3117 3852 2.025981 TCACCTTGAGGCTATGCATTGT 60.026 45.455 3.54 0.00 39.32 2.71
3118 3853 2.646930 TCACCTTGAGGCTATGCATTG 58.353 47.619 3.54 3.55 39.32 2.82
3119 3854 3.220110 CATCACCTTGAGGCTATGCATT 58.780 45.455 3.54 0.00 39.32 3.56
3120 3855 2.860009 CATCACCTTGAGGCTATGCAT 58.140 47.619 3.79 3.79 39.32 3.96
3121 3856 2.336945 CATCACCTTGAGGCTATGCA 57.663 50.000 0.00 0.00 39.32 3.96
3140 3875 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
3141 3876 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63
3142 3877 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
3143 3878 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
3144 3879 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
3145 3880 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
3146 3881 2.775911 ATCCGATCCTACATGGCATG 57.224 50.000 25.31 25.31 35.26 4.06
3147 3882 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
3148 3883 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
3149 3884 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
3150 3885 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
3151 3886 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
3152 3887 6.433404 ACTTTACGTCATATCCGATCCTACAT 59.567 38.462 0.00 0.00 0.00 2.29
3153 3888 5.766670 ACTTTACGTCATATCCGATCCTACA 59.233 40.000 0.00 0.00 0.00 2.74
3154 3889 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
3155 3890 6.596888 CCTACTTTACGTCATATCCGATCCTA 59.403 42.308 0.00 0.00 0.00 2.94
3156 3891 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
3157 3892 5.182760 ACCTACTTTACGTCATATCCGATCC 59.817 44.000 0.00 0.00 0.00 3.36
3158 3893 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
3159 3894 6.567321 CGAACCTACTTTACGTCATATCCGAT 60.567 42.308 0.00 0.00 0.00 4.18
3160 3895 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
3161 3896 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
3162 3897 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
3163 3898 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
3164 3899 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
3165 3900 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
3166 3901 4.996788 ATCCGAACCTACTTTACGTCAT 57.003 40.909 0.00 0.00 0.00 3.06
3167 3902 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
3168 3903 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
3169 3904 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
3170 3905 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
3171 3906 5.738495 GCTTCCCTATCCGAACCTACTTTAC 60.738 48.000 0.00 0.00 0.00 2.01
3172 3907 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
3173 3908 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
3174 3909 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
3175 3910 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
3176 3911 2.036089 CTGCTTCCCTATCCGAACCTAC 59.964 54.545 0.00 0.00 0.00 3.18
3177 3912 2.317040 CTGCTTCCCTATCCGAACCTA 58.683 52.381 0.00 0.00 0.00 3.08
3178 3913 1.123928 CTGCTTCCCTATCCGAACCT 58.876 55.000 0.00 0.00 0.00 3.50
3179 3914 0.106894 CCTGCTTCCCTATCCGAACC 59.893 60.000 0.00 0.00 0.00 3.62
3180 3915 1.120530 TCCTGCTTCCCTATCCGAAC 58.879 55.000 0.00 0.00 0.00 3.95
3181 3916 1.971357 GATCCTGCTTCCCTATCCGAA 59.029 52.381 0.00 0.00 0.00 4.30
3182 3917 1.633774 GATCCTGCTTCCCTATCCGA 58.366 55.000 0.00 0.00 0.00 4.55
3183 3918 0.610687 GGATCCTGCTTCCCTATCCG 59.389 60.000 3.84 0.00 0.00 4.18
3184 3919 1.905894 GAGGATCCTGCTTCCCTATCC 59.094 57.143 22.02 0.00 37.05 2.59
3185 3920 2.831526 GAGAGGATCCTGCTTCCCTATC 59.168 54.545 22.02 0.00 33.66 2.08
3186 3921 2.494439 GGAGAGGATCCTGCTTCCCTAT 60.494 54.545 22.02 0.00 45.64 2.57
3187 3922 1.133009 GGAGAGGATCCTGCTTCCCTA 60.133 57.143 22.02 0.00 45.64 3.53
3188 3923 0.399806 GGAGAGGATCCTGCTTCCCT 60.400 60.000 22.02 8.76 45.64 4.20
3189 3924 2.141312 GGAGAGGATCCTGCTTCCC 58.859 63.158 22.02 10.49 45.64 3.97
3202 3937 3.465403 CACCCGCCTCCTGGAGAG 61.465 72.222 25.18 17.02 42.83 3.20
3205 3940 3.916438 TAAGCACCCGCCTCCTGGA 62.916 63.158 0.00 0.00 39.83 3.86
3206 3941 2.478335 TTTAAGCACCCGCCTCCTGG 62.478 60.000 0.00 0.00 39.83 4.45
3207 3942 1.002624 TTTAAGCACCCGCCTCCTG 60.003 57.895 0.00 0.00 39.83 3.86
3208 3943 1.198759 TCTTTAAGCACCCGCCTCCT 61.199 55.000 0.00 0.00 39.83 3.69
3209 3944 0.744771 CTCTTTAAGCACCCGCCTCC 60.745 60.000 0.00 0.00 39.83 4.30
3210 3945 0.249398 TCTCTTTAAGCACCCGCCTC 59.751 55.000 0.00 0.00 39.83 4.70
3211 3946 0.690762 TTCTCTTTAAGCACCCGCCT 59.309 50.000 0.00 0.00 39.83 5.52
3212 3947 1.530323 TTTCTCTTTAAGCACCCGCC 58.470 50.000 0.00 0.00 39.83 6.13
3213 3948 3.565516 CTTTTTCTCTTTAAGCACCCGC 58.434 45.455 0.00 0.00 38.99 6.13
3214 3949 3.565516 GCTTTTTCTCTTTAAGCACCCG 58.434 45.455 0.00 0.00 42.84 5.28
3215 3950 3.004419 ACGCTTTTTCTCTTTAAGCACCC 59.996 43.478 0.00 0.00 43.34 4.61
3216 3951 3.975035 CACGCTTTTTCTCTTTAAGCACC 59.025 43.478 0.00 0.00 43.34 5.01
3217 3952 3.975035 CCACGCTTTTTCTCTTTAAGCAC 59.025 43.478 0.00 0.00 43.34 4.40
3218 3953 3.630312 ACCACGCTTTTTCTCTTTAAGCA 59.370 39.130 0.00 0.00 43.34 3.91
3219 3954 4.219802 GACCACGCTTTTTCTCTTTAAGC 58.780 43.478 0.00 0.00 40.58 3.09
3220 3955 4.610680 CGGACCACGCTTTTTCTCTTTAAG 60.611 45.833 0.00 0.00 34.82 1.85
3221 3956 3.249080 CGGACCACGCTTTTTCTCTTTAA 59.751 43.478 0.00 0.00 34.82 1.52
3222 3957 2.803956 CGGACCACGCTTTTTCTCTTTA 59.196 45.455 0.00 0.00 34.82 1.85
3223 3958 1.602377 CGGACCACGCTTTTTCTCTTT 59.398 47.619 0.00 0.00 34.82 2.52
3224 3959 1.202604 TCGGACCACGCTTTTTCTCTT 60.203 47.619 0.00 0.00 43.86 2.85
3225 3960 0.391597 TCGGACCACGCTTTTTCTCT 59.608 50.000 0.00 0.00 43.86 3.10
3226 3961 1.128692 CATCGGACCACGCTTTTTCTC 59.871 52.381 0.00 0.00 43.86 2.87
3227 3962 1.156736 CATCGGACCACGCTTTTTCT 58.843 50.000 0.00 0.00 43.86 2.52
3228 3963 1.136057 GTCATCGGACCACGCTTTTTC 60.136 52.381 0.00 0.00 43.86 2.29
3229 3964 0.872388 GTCATCGGACCACGCTTTTT 59.128 50.000 0.00 0.00 43.86 1.94
3230 3965 0.250124 TGTCATCGGACCACGCTTTT 60.250 50.000 0.00 0.00 43.65 2.27
3231 3966 0.250124 TTGTCATCGGACCACGCTTT 60.250 50.000 0.00 0.00 43.65 3.51
3232 3967 0.250124 TTTGTCATCGGACCACGCTT 60.250 50.000 0.00 0.00 43.65 4.68
3233 3968 0.250124 TTTTGTCATCGGACCACGCT 60.250 50.000 0.00 0.00 43.65 5.07
3234 3969 0.165944 CTTTTGTCATCGGACCACGC 59.834 55.000 0.00 0.00 43.65 5.34
3235 3970 0.165944 GCTTTTGTCATCGGACCACG 59.834 55.000 0.00 0.00 43.65 4.94
3236 3971 1.197721 CAGCTTTTGTCATCGGACCAC 59.802 52.381 0.00 0.00 43.65 4.16
3237 3972 1.071542 TCAGCTTTTGTCATCGGACCA 59.928 47.619 0.00 0.00 43.65 4.02
3238 3973 1.808411 TCAGCTTTTGTCATCGGACC 58.192 50.000 0.00 0.00 43.65 4.46
3239 3974 3.896648 TTTCAGCTTTTGTCATCGGAC 57.103 42.857 0.00 0.00 44.57 4.79
3240 3975 3.253188 CCTTTTCAGCTTTTGTCATCGGA 59.747 43.478 0.00 0.00 0.00 4.55
3241 3976 3.004734 ACCTTTTCAGCTTTTGTCATCGG 59.995 43.478 0.00 0.00 0.00 4.18
3242 3977 4.228912 ACCTTTTCAGCTTTTGTCATCG 57.771 40.909 0.00 0.00 0.00 3.84
3243 3978 4.746611 CCAACCTTTTCAGCTTTTGTCATC 59.253 41.667 0.00 0.00 0.00 2.92
3244 3979 4.405358 TCCAACCTTTTCAGCTTTTGTCAT 59.595 37.500 0.00 0.00 0.00 3.06
3245 3980 3.766591 TCCAACCTTTTCAGCTTTTGTCA 59.233 39.130 0.00 0.00 0.00 3.58
3246 3981 4.142160 ACTCCAACCTTTTCAGCTTTTGTC 60.142 41.667 0.00 0.00 0.00 3.18
3247 3982 3.769300 ACTCCAACCTTTTCAGCTTTTGT 59.231 39.130 0.00 0.00 0.00 2.83
3248 3983 4.114794 CACTCCAACCTTTTCAGCTTTTG 58.885 43.478 0.00 0.00 0.00 2.44
3249 3984 4.023291 TCACTCCAACCTTTTCAGCTTTT 58.977 39.130 0.00 0.00 0.00 2.27
3250 3985 3.631250 TCACTCCAACCTTTTCAGCTTT 58.369 40.909 0.00 0.00 0.00 3.51
3251 3986 3.297134 TCACTCCAACCTTTTCAGCTT 57.703 42.857 0.00 0.00 0.00 3.74
3252 3987 3.297134 TTCACTCCAACCTTTTCAGCT 57.703 42.857 0.00 0.00 0.00 4.24
3253 3988 4.142160 ACTTTTCACTCCAACCTTTTCAGC 60.142 41.667 0.00 0.00 0.00 4.26
3254 3989 5.582689 ACTTTTCACTCCAACCTTTTCAG 57.417 39.130 0.00 0.00 0.00 3.02
3255 3990 6.419791 TCTACTTTTCACTCCAACCTTTTCA 58.580 36.000 0.00 0.00 0.00 2.69
3256 3991 6.766467 TCTCTACTTTTCACTCCAACCTTTTC 59.234 38.462 0.00 0.00 0.00 2.29
3257 3992 6.659824 TCTCTACTTTTCACTCCAACCTTTT 58.340 36.000 0.00 0.00 0.00 2.27
3258 3993 6.248569 TCTCTACTTTTCACTCCAACCTTT 57.751 37.500 0.00 0.00 0.00 3.11
3259 3994 5.888982 TCTCTACTTTTCACTCCAACCTT 57.111 39.130 0.00 0.00 0.00 3.50
3260 3995 5.799213 CATCTCTACTTTTCACTCCAACCT 58.201 41.667 0.00 0.00 0.00 3.50
3261 3996 4.393371 GCATCTCTACTTTTCACTCCAACC 59.607 45.833 0.00 0.00 0.00 3.77
3262 3997 4.997395 TGCATCTCTACTTTTCACTCCAAC 59.003 41.667 0.00 0.00 0.00 3.77
3263 3998 5.227569 TGCATCTCTACTTTTCACTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
3264 3999 4.890158 TGCATCTCTACTTTTCACTCCA 57.110 40.909 0.00 0.00 0.00 3.86
3265 4000 5.064452 CACATGCATCTCTACTTTTCACTCC 59.936 44.000 0.00 0.00 0.00 3.85
3266 4001 5.641209 ACACATGCATCTCTACTTTTCACTC 59.359 40.000 0.00 0.00 0.00 3.51
3267 4002 5.555017 ACACATGCATCTCTACTTTTCACT 58.445 37.500 0.00 0.00 0.00 3.41
3268 4003 5.869753 ACACATGCATCTCTACTTTTCAC 57.130 39.130 0.00 0.00 0.00 3.18
3269 4004 6.591448 CAGTACACATGCATCTCTACTTTTCA 59.409 38.462 0.00 0.00 0.00 2.69
3270 4005 6.813649 TCAGTACACATGCATCTCTACTTTTC 59.186 38.462 0.00 0.00 0.00 2.29
3271 4006 6.701340 TCAGTACACATGCATCTCTACTTTT 58.299 36.000 0.00 0.00 0.00 2.27
3272 4007 6.286240 TCAGTACACATGCATCTCTACTTT 57.714 37.500 0.00 0.00 0.00 2.66
3273 4008 5.921962 TCAGTACACATGCATCTCTACTT 57.078 39.130 0.00 0.00 0.00 2.24
3274 4009 5.420421 ACTTCAGTACACATGCATCTCTACT 59.580 40.000 0.00 0.00 0.00 2.57
3275 4010 5.655488 ACTTCAGTACACATGCATCTCTAC 58.345 41.667 0.00 0.00 0.00 2.59
3276 4011 5.654209 AGACTTCAGTACACATGCATCTCTA 59.346 40.000 0.00 0.00 0.00 2.43
3277 4012 4.465660 AGACTTCAGTACACATGCATCTCT 59.534 41.667 0.00 0.00 0.00 3.10
3278 4013 4.753233 AGACTTCAGTACACATGCATCTC 58.247 43.478 0.00 0.00 0.00 2.75
3279 4014 4.815533 AGACTTCAGTACACATGCATCT 57.184 40.909 0.00 0.00 0.00 2.90
3280 4015 5.869753 AAAGACTTCAGTACACATGCATC 57.130 39.130 0.00 0.00 0.00 3.91
3281 4016 7.928307 AATAAAGACTTCAGTACACATGCAT 57.072 32.000 0.00 0.00 0.00 3.96
3282 4017 7.744087 AAATAAAGACTTCAGTACACATGCA 57.256 32.000 0.00 0.00 0.00 3.96
3312 4047 8.361139 GCTATCACTAGTGAGCCTTATTAAGAA 58.639 37.037 28.29 2.82 43.61 2.52
3313 4048 7.726291 AGCTATCACTAGTGAGCCTTATTAAGA 59.274 37.037 28.29 3.26 43.61 2.10
3314 4049 7.891561 AGCTATCACTAGTGAGCCTTATTAAG 58.108 38.462 28.29 14.84 43.61 1.85
3315 4050 7.841282 AGCTATCACTAGTGAGCCTTATTAA 57.159 36.000 28.29 3.98 43.61 1.40
3316 4051 7.661968 CAAGCTATCACTAGTGAGCCTTATTA 58.338 38.462 28.29 14.21 43.61 0.98
3317 4052 6.520272 CAAGCTATCACTAGTGAGCCTTATT 58.480 40.000 28.29 15.05 43.61 1.40
3318 4053 5.510520 GCAAGCTATCACTAGTGAGCCTTAT 60.511 44.000 28.29 14.52 43.61 1.73
3319 4054 4.202161 GCAAGCTATCACTAGTGAGCCTTA 60.202 45.833 28.29 15.83 43.61 2.69
3320 4055 3.431486 GCAAGCTATCACTAGTGAGCCTT 60.431 47.826 28.29 23.92 43.61 4.35
3321 4056 2.102252 GCAAGCTATCACTAGTGAGCCT 59.898 50.000 28.29 20.29 43.61 4.58
3322 4057 2.159043 TGCAAGCTATCACTAGTGAGCC 60.159 50.000 28.29 18.62 43.61 4.70
3323 4058 3.170791 TGCAAGCTATCACTAGTGAGC 57.829 47.619 28.29 25.44 43.61 4.26
3324 4059 4.510711 CCAATGCAAGCTATCACTAGTGAG 59.489 45.833 28.29 17.81 43.61 3.51
3325 4060 4.162131 TCCAATGCAAGCTATCACTAGTGA 59.838 41.667 27.07 27.07 44.59 3.41
3326 4061 4.445453 TCCAATGCAAGCTATCACTAGTG 58.555 43.478 17.17 17.17 0.00 2.74
3327 4062 4.760530 TCCAATGCAAGCTATCACTAGT 57.239 40.909 0.00 0.00 0.00 2.57
3328 4063 5.819379 TCTTTCCAATGCAAGCTATCACTAG 59.181 40.000 0.00 0.00 0.00 2.57
3329 4064 5.744171 TCTTTCCAATGCAAGCTATCACTA 58.256 37.500 0.00 0.00 0.00 2.74
3330 4065 4.592942 TCTTTCCAATGCAAGCTATCACT 58.407 39.130 0.00 0.00 0.00 3.41
3331 4066 4.970662 TCTTTCCAATGCAAGCTATCAC 57.029 40.909 0.00 0.00 0.00 3.06
3332 4067 5.981088 TTTCTTTCCAATGCAAGCTATCA 57.019 34.783 0.00 0.00 0.00 2.15
3365 4100 9.199982 CATGACAAAAAGTAATTTGAAGCATCT 57.800 29.630 6.76 0.00 41.73 2.90
3366 4101 8.437742 CCATGACAAAAAGTAATTTGAAGCATC 58.562 33.333 6.76 0.00 41.73 3.91
3367 4102 7.388500 CCCATGACAAAAAGTAATTTGAAGCAT 59.612 33.333 6.76 4.86 41.73 3.79
3368 4103 6.705381 CCCATGACAAAAAGTAATTTGAAGCA 59.295 34.615 6.76 3.04 41.73 3.91
3369 4104 6.147656 CCCCATGACAAAAAGTAATTTGAAGC 59.852 38.462 6.76 0.00 41.73 3.86
3370 4105 6.147656 GCCCCATGACAAAAAGTAATTTGAAG 59.852 38.462 6.76 0.00 41.73 3.02
3371 4106 5.994668 GCCCCATGACAAAAAGTAATTTGAA 59.005 36.000 6.76 0.00 41.73 2.69
3372 4107 5.070981 TGCCCCATGACAAAAAGTAATTTGA 59.929 36.000 6.76 0.00 41.73 2.69
3373 4108 5.303971 TGCCCCATGACAAAAAGTAATTTG 58.696 37.500 0.00 0.00 44.11 2.32
3374 4109 5.559148 TGCCCCATGACAAAAAGTAATTT 57.441 34.783 0.00 0.00 0.00 1.82
3375 4110 5.760484 ATGCCCCATGACAAAAAGTAATT 57.240 34.783 0.00 0.00 0.00 1.40
3376 4111 6.383726 ACATATGCCCCATGACAAAAAGTAAT 59.616 34.615 1.58 0.00 0.00 1.89
3377 4112 5.719085 ACATATGCCCCATGACAAAAAGTAA 59.281 36.000 1.58 0.00 0.00 2.24
3378 4113 5.268387 ACATATGCCCCATGACAAAAAGTA 58.732 37.500 1.58 0.00 0.00 2.24
3379 4114 4.095946 ACATATGCCCCATGACAAAAAGT 58.904 39.130 1.58 0.00 0.00 2.66
3380 4115 4.741321 ACATATGCCCCATGACAAAAAG 57.259 40.909 1.58 0.00 0.00 2.27
3381 4116 5.304101 GGATACATATGCCCCATGACAAAAA 59.696 40.000 1.58 0.00 0.00 1.94
3382 4117 4.832266 GGATACATATGCCCCATGACAAAA 59.168 41.667 1.58 0.00 0.00 2.44
3383 4118 4.141065 TGGATACATATGCCCCATGACAAA 60.141 41.667 1.58 0.00 46.17 2.83
3384 4119 3.397282 TGGATACATATGCCCCATGACAA 59.603 43.478 1.58 0.00 46.17 3.18
3385 4120 2.985311 TGGATACATATGCCCCATGACA 59.015 45.455 1.58 0.00 46.17 3.58
3386 4121 3.719268 TGGATACATATGCCCCATGAC 57.281 47.619 1.58 0.00 46.17 3.06
3400 4135 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
3401 4136 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
3402 4137 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
3403 4138 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
3404 4139 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
3405 4140 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
3406 4141 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
3407 4142 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
3408 4143 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
3409 4144 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
3410 4145 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
3411 4146 2.727123 TAGGGCATGTACAATGGTGG 57.273 50.000 0.00 0.00 0.00 4.61
3412 4147 3.953612 ACATTAGGGCATGTACAATGGTG 59.046 43.478 0.00 0.00 35.51 4.17
3413 4148 4.249638 ACATTAGGGCATGTACAATGGT 57.750 40.909 0.00 0.00 35.51 3.55
3414 4149 6.899393 ATTACATTAGGGCATGTACAATGG 57.101 37.500 0.00 0.00 38.99 3.16
3415 4150 8.389779 TGTATTACATTAGGGCATGTACAATG 57.610 34.615 0.00 0.00 38.99 2.82
3416 4151 7.665559 CCTGTATTACATTAGGGCATGTACAAT 59.334 37.037 0.00 0.00 38.99 2.71
3417 4152 6.995686 CCTGTATTACATTAGGGCATGTACAA 59.004 38.462 0.00 0.00 38.99 2.41
3418 4153 6.100569 ACCTGTATTACATTAGGGCATGTACA 59.899 38.462 0.00 0.00 38.99 2.90
3419 4154 6.531021 ACCTGTATTACATTAGGGCATGTAC 58.469 40.000 0.00 0.00 38.99 2.90
3420 4155 6.757173 ACCTGTATTACATTAGGGCATGTA 57.243 37.500 0.00 0.00 38.40 2.29
3421 4156 5.646692 ACCTGTATTACATTAGGGCATGT 57.353 39.130 0.00 0.00 40.61 3.21
3422 4157 6.321181 ACAAACCTGTATTACATTAGGGCATG 59.679 38.462 0.00 0.00 32.54 4.06
3423 4158 6.431722 ACAAACCTGTATTACATTAGGGCAT 58.568 36.000 0.00 0.00 32.54 4.40
3424 4159 5.822204 ACAAACCTGTATTACATTAGGGCA 58.178 37.500 0.00 0.00 32.54 5.36
3425 4160 6.405397 CCAACAAACCTGTATTACATTAGGGC 60.405 42.308 0.00 0.00 33.45 5.19
3426 4161 6.405397 GCCAACAAACCTGTATTACATTAGGG 60.405 42.308 0.00 0.00 33.45 3.53
3427 4162 6.151985 TGCCAACAAACCTGTATTACATTAGG 59.848 38.462 0.00 0.00 33.45 2.69
3428 4163 7.151999 TGCCAACAAACCTGTATTACATTAG 57.848 36.000 0.00 0.00 33.45 1.73
3450 4191 1.132640 GCCGTCGACACTGATTTGC 59.867 57.895 17.16 0.86 0.00 3.68
3458 4199 3.986006 TCCCACTGCCGTCGACAC 61.986 66.667 17.16 7.53 0.00 3.67
3465 4206 0.249120 TTGTGATAGTCCCACTGCCG 59.751 55.000 0.00 0.00 35.66 5.69
3518 4259 5.070446 TGGAGCCATCAACTAATACTACCAG 59.930 44.000 0.00 0.00 0.00 4.00
3519 4260 4.966168 TGGAGCCATCAACTAATACTACCA 59.034 41.667 0.00 0.00 0.00 3.25
3520 4261 5.546621 TGGAGCCATCAACTAATACTACC 57.453 43.478 0.00 0.00 0.00 3.18
3521 4262 5.409826 GCATGGAGCCATCAACTAATACTAC 59.590 44.000 0.00 0.00 37.23 2.73
3533 4274 2.484062 CCAACCGCATGGAGCCATC 61.484 63.158 0.00 0.00 43.54 3.51
3598 4339 1.202371 GGATCATGGCACTTGCACATG 60.202 52.381 18.91 18.91 44.05 3.21
3654 4396 3.134442 CCTCATCTCTCTCCCTTTCCTTG 59.866 52.174 0.00 0.00 0.00 3.61
3710 4452 4.946478 AATACTCTGGCCAGATCTGTAC 57.054 45.455 35.11 13.48 36.76 2.90
3711 4453 5.957771 AAAATACTCTGGCCAGATCTGTA 57.042 39.130 35.11 30.19 36.76 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.